Query 016458
Match_columns 389
No_of_seqs 905 out of 2227
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 13:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_a 40S ribosomal protein R 100.0 5.9E-63 2E-67 429.0 36.7 373 4-380 3-377 (380)
2 1got_B GT-beta; complex (GTP-b 100.0 2.8E-57 9.6E-62 387.5 49.1 338 11-375 3-340 (340)
3 2pbi_B Guanine nucleotide-bind 100.0 4.3E-56 1.5E-60 381.8 48.6 345 8-375 9-354 (354)
4 1vyh_C Platelet-activating fac 100.0 9.6E-56 3.3E-60 387.3 40.1 300 49-377 91-410 (410)
5 3ow8_A WD repeat-containing pr 100.0 2.5E-52 8.7E-57 353.3 41.3 293 57-377 22-320 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 8.3E-52 2.8E-56 348.1 41.3 295 57-378 3-302 (304)
7 3frx_A Guanine nucleotide-bind 100.0 1.3E-50 4.4E-55 343.1 41.6 300 54-379 4-318 (319)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-50 6.9E-55 345.7 38.2 311 56-382 4-339 (345)
9 4ery_A WD repeat-containing pr 100.0 2.3E-49 8E-54 334.9 44.1 297 56-377 12-311 (312)
10 4gqb_B Methylosome protein 50; 100.0 4.2E-50 1.4E-54 342.0 37.5 297 64-386 27-339 (344)
11 2xzm_R RACK1; ribosome, transl 100.0 2.3E-49 7.7E-54 339.1 40.6 301 56-380 10-342 (343)
12 2hes_X YDR267CP; beta-propelle 100.0 3.7E-49 1.3E-53 335.7 39.3 303 56-379 3-329 (330)
13 4g56_B MGC81050 protein; prote 100.0 1.5E-49 5.3E-54 341.3 36.9 292 63-379 38-344 (357)
14 4aow_A Guanine nucleotide-bind 100.0 6.7E-48 2.3E-52 330.1 43.7 305 52-380 23-339 (340)
15 1erj_A Transcriptional repress 100.0 1.7E-48 5.8E-53 339.7 40.5 287 65-380 62-391 (393)
16 1nr0_A Actin interacting prote 100.0 1.1E-47 3.8E-52 353.0 41.4 307 48-382 40-359 (611)
17 1nr0_A Actin interacting prote 100.0 5.1E-48 1.7E-52 355.3 38.6 321 42-377 165-610 (611)
18 3zwl_B Eukaryotic translation 100.0 1.6E-46 5.5E-51 325.1 41.2 302 56-381 21-349 (369)
19 3dm0_A Maltose-binding peripla 100.0 3.8E-46 1.3E-50 348.3 43.9 299 57-377 372-692 (694)
20 1sq9_A Antiviral protein SKI8; 100.0 6.2E-47 2.1E-51 331.2 36.2 312 57-380 6-397 (397)
21 2ymu_A WD-40 repeat protein; u 100.0 6.4E-46 2.2E-50 340.4 42.0 295 46-375 283-577 (577)
22 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-45 6.3E-50 311.3 41.3 294 56-383 7-301 (313)
23 1vyh_C Platelet-activating fac 100.0 9.4E-47 3.2E-51 330.3 34.0 264 45-327 128-410 (410)
24 1r5m_A SIR4-interacting protei 100.0 3.8E-45 1.3E-49 322.6 41.3 301 52-377 30-424 (425)
25 3ei3_B DNA damage-binding prot 100.0 1.5E-45 5E-50 320.8 37.6 302 55-378 61-382 (383)
26 1gxr_A ESG1, transducin-like e 100.0 1.3E-44 4.3E-49 309.4 42.3 293 55-377 39-336 (337)
27 2ynn_A Coatomer subunit beta'; 100.0 2.6E-45 9E-50 308.4 37.3 257 100-382 4-263 (304)
28 2pm9_A Protein WEB1, protein t 100.0 1.5E-46 5.1E-51 330.8 30.3 326 44-379 42-415 (416)
29 2ymu_A WD-40 repeat protein; u 100.0 1.2E-44 4E-49 332.0 43.2 301 45-380 241-541 (577)
30 3ow8_A WD repeat-containing pr 100.0 3.2E-45 1.1E-49 309.8 36.4 266 42-327 53-320 (321)
31 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-45 6E-50 319.1 33.5 298 63-381 4-364 (372)
32 4e54_B DNA damage-binding prot 100.0 6.9E-46 2.4E-50 327.8 30.8 305 58-382 110-434 (435)
33 4a11_B DNA excision repair pro 100.0 1.5E-44 5.2E-49 317.0 37.8 311 52-383 28-370 (408)
34 4gqb_B Methylosome protein 50; 100.0 1.3E-44 4.3E-49 308.3 35.1 249 65-331 80-334 (344)
35 1got_B GT-beta; complex (GTP-b 100.0 7.3E-44 2.5E-48 304.5 39.9 302 3-325 2-340 (340)
36 3k26_A Polycomb protein EED; W 100.0 7.8E-45 2.7E-49 314.3 34.2 297 56-378 6-366 (366)
37 3i2n_A WD repeat-containing pr 100.0 8.2E-45 2.8E-49 313.1 34.0 305 58-381 9-356 (357)
38 4aez_A CDC20, WD repeat-contai 100.0 1.3E-43 4.4E-48 310.2 38.2 295 58-383 82-385 (401)
39 3gre_A Serine/threonine-protei 100.0 3.3E-44 1.1E-48 317.8 32.0 306 51-375 47-437 (437)
40 2pm9_A Protein WEB1, protein t 100.0 9.8E-45 3.4E-49 319.2 27.1 297 67-382 12-341 (416)
41 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-43 1.2E-47 334.9 39.7 296 57-379 3-303 (814)
42 3vl1_A 26S proteasome regulato 100.0 1E-43 3.5E-48 313.1 32.1 311 47-378 78-419 (420)
43 2pbi_B Guanine nucleotide-bind 100.0 8E-43 2.7E-47 299.4 36.5 262 45-325 84-354 (354)
44 3v7d_B Cell division control p 100.0 2.4E-42 8.1E-47 308.3 40.1 296 57-383 111-426 (464)
45 1gxr_A ESG1, transducin-like e 100.0 7.2E-43 2.4E-47 298.5 35.2 289 66-382 8-300 (337)
46 3dwl_C Actin-related protein 2 100.0 3.9E-45 1.3E-49 317.5 21.4 293 62-376 6-377 (377)
47 2pm7_B Protein transport prote 100.0 1.3E-42 4.5E-47 291.0 34.4 257 61-327 3-284 (297)
48 3frx_A Guanine nucleotide-bind 100.0 1.7E-42 5.8E-47 293.2 35.3 271 42-329 35-318 (319)
49 4gga_A P55CDC, cell division c 100.0 9.6E-42 3.3E-46 300.0 40.8 279 69-379 107-396 (420)
50 4g56_B MGC81050 protein; prote 100.0 2.6E-43 8.9E-48 302.6 29.8 253 61-331 88-346 (357)
51 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-42 5.9E-47 343.9 39.4 321 45-383 635-1039(1249)
52 1yfq_A Cell cycle arrest prote 100.0 2E-42 7E-47 296.4 34.4 286 59-369 3-319 (342)
53 3iz6_a 40S ribosomal protein R 100.0 5.3E-43 1.8E-47 303.7 30.2 272 44-330 85-377 (380)
54 4h5i_A Guanine nucleotide-exch 100.0 1.8E-43 6.1E-48 304.4 26.8 290 68-379 15-344 (365)
55 2j04_B YDR362CP, TAU91; beta p 100.0 3.5E-43 1.2E-47 313.7 29.3 295 66-378 132-517 (524)
56 3v7d_B Cell division control p 100.0 2.5E-41 8.6E-46 301.6 41.3 302 44-369 139-458 (464)
57 3vl1_A 26S proteasome regulato 100.0 2E-43 6.7E-48 311.3 26.5 283 69-379 58-366 (420)
58 3mmy_A MRNA export factor; mRN 100.0 1.5E-41 5.1E-46 293.8 37.4 297 51-369 23-341 (368)
59 4ggc_A P55CDC, cell division c 100.0 1.5E-40 5.1E-45 281.8 41.9 279 70-380 28-317 (318)
60 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-41 7.4E-46 299.2 37.9 281 60-382 126-418 (435)
61 3dw8_B Serine/threonine-protei 100.0 7.7E-42 2.6E-46 303.6 35.3 300 65-369 26-441 (447)
62 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-41 5.7E-46 336.9 40.8 294 59-379 607-914 (1249)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-41 5.4E-46 290.5 34.8 282 43-335 34-342 (345)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.9E-41 3E-45 296.3 40.5 304 43-379 135-443 (445)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4E-41 1.4E-45 298.6 38.2 289 55-382 106-395 (445)
66 2xzm_R RACK1; ribosome, transl 100.0 2.6E-41 9E-46 289.1 35.7 275 42-330 44-342 (343)
67 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-42 1.3E-46 295.3 30.1 309 60-382 4-341 (351)
68 1pgu_A Actin interacting prote 100.0 2.9E-41 1E-45 311.8 37.8 306 43-379 179-615 (615)
69 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-41 1.3E-45 320.4 39.0 192 43-239 35-243 (902)
70 4ery_A WD repeat-containing pr 100.0 9.1E-41 3.1E-45 282.3 36.1 256 100-382 14-272 (312)
71 1pgu_A Actin interacting prote 100.0 6E-41 2E-45 309.8 37.2 297 47-369 39-361 (615)
72 2pm7_B Protein transport prote 100.0 9.1E-41 3.1E-45 279.8 34.4 254 103-377 3-284 (297)
73 3bg1_A Protein SEC13 homolog; 100.0 1.3E-41 4.3E-46 287.5 28.8 255 61-327 7-292 (316)
74 1erj_A Transcriptional repress 100.0 2.5E-40 8.7E-45 288.2 36.6 266 50-329 88-390 (393)
75 3jrp_A Fusion protein of prote 100.0 1.6E-40 5.6E-45 288.5 31.7 260 58-328 2-287 (379)
76 2hes_X YDR267CP; beta-propelle 100.0 9.7E-40 3.3E-44 277.7 35.6 256 98-380 3-282 (330)
77 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-40 8.1E-45 314.9 34.7 212 63-287 13-248 (902)
78 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-39 3.6E-44 310.9 37.6 313 45-379 33-387 (814)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-40 7.1E-45 290.1 29.8 299 69-383 36-347 (402)
80 4aez_A CDC20, WD repeat-contai 100.0 2.7E-39 9.3E-44 282.7 34.5 269 48-335 114-387 (401)
81 3bg1_A Protein SEC13 homolog; 100.0 2.1E-40 7.3E-45 280.0 22.3 251 104-377 8-292 (316)
82 3dm0_A Maltose-binding peripla 100.0 4.3E-39 1.5E-43 300.7 33.3 272 43-327 401-692 (694)
83 1sq9_A Antiviral protein SKI8; 100.0 1.7E-39 5.8E-44 284.0 28.3 277 43-330 32-397 (397)
84 3jrp_A Fusion protein of prote 100.0 1.2E-38 4.2E-43 276.7 32.2 262 99-379 1-288 (379)
85 3jro_A Fusion protein of prote 100.0 1E-39 3.4E-44 306.6 26.8 258 60-328 2-285 (753)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-38 1.4E-42 279.4 35.8 286 67-378 4-391 (450)
87 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-38 9.7E-43 271.2 33.2 292 56-380 8-338 (355)
88 3k26_A Polycomb protein EED; W 100.0 1.6E-39 5.3E-44 281.0 24.9 266 48-327 45-365 (366)
89 2xyi_A Probable histone-bindin 100.0 4.7E-38 1.6E-42 277.2 33.7 261 103-381 122-413 (430)
90 4aow_A Guanine nucleotide-bind 100.0 2.5E-37 8.6E-42 264.5 37.2 274 42-330 56-339 (340)
91 4gga_A P55CDC, cell division c 100.0 1E-37 3.4E-42 274.4 35.3 265 50-335 128-402 (420)
92 3zwl_B Eukaryotic translation 100.0 2.1E-37 7.2E-42 267.9 36.7 275 43-332 50-350 (369)
93 2xyi_A Probable histone-bindin 100.0 1.8E-38 6.1E-43 279.9 29.9 260 60-329 121-411 (430)
94 1k8k_C P40, ARP2/3 complex 41 100.0 6.3E-38 2.1E-42 271.6 30.3 275 45-331 28-364 (372)
95 3gre_A Serine/threonine-protei 100.0 4.8E-39 1.7E-43 284.7 22.9 288 74-382 34-363 (437)
96 3odt_A Protein DOA1; ubiquitin 100.0 8.1E-37 2.8E-41 258.2 34.5 267 42-335 34-303 (313)
97 3dwl_C Actin-related protein 2 100.0 5.7E-39 2E-43 278.7 21.6 251 104-377 6-280 (377)
98 3i2n_A WD repeat-containing pr 100.0 1.4E-37 4.7E-42 267.9 28.9 267 46-331 43-356 (357)
99 2j04_A TAU60, YPL007P, hypothe 100.0 3.7E-38 1.3E-42 274.7 25.3 264 65-377 13-296 (588)
100 1r5m_A SIR4-interacting protei 100.0 1.5E-37 5E-42 274.1 29.1 262 45-327 128-424 (425)
101 3ei3_B DNA damage-binding prot 100.0 3.8E-37 1.3E-41 267.8 30.8 267 93-382 57-343 (383)
102 3lrv_A PRE-mRNA-splicing facto 100.0 5.2E-38 1.8E-42 268.8 24.3 274 74-369 43-328 (343)
103 3bws_A Protein LP49; two-domai 100.0 4.7E-36 1.6E-40 265.2 37.1 289 58-378 114-432 (433)
104 4e54_B DNA damage-binding prot 100.0 4.6E-37 1.6E-41 271.4 29.3 266 100-382 110-391 (435)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 9.9E-37 3.4E-41 266.7 30.5 269 45-331 55-345 (402)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-36 4.1E-41 268.9 31.2 275 44-352 150-433 (435)
107 3dw8_B Serine/threonine-protei 100.0 1.6E-37 5.4E-42 275.8 25.5 265 108-383 27-378 (447)
108 2j04_B YDR362CP, TAU91; beta p 100.0 8.1E-38 2.8E-42 279.2 23.1 251 108-379 132-429 (524)
109 3jro_A Fusion protein of prote 100.0 1.2E-36 4.2E-41 285.7 28.4 260 103-379 3-286 (753)
110 4ggc_A P55CDC, cell division c 100.0 5.3E-35 1.8E-39 247.6 35.0 268 46-330 44-317 (318)
111 1l0q_A Surface layer protein; 100.0 1.5E-34 5.1E-39 252.1 37.6 270 80-382 3-279 (391)
112 1yfq_A Cell cycle arrest prote 100.0 3.5E-36 1.2E-40 257.6 26.3 249 106-382 8-286 (342)
113 4gq1_A NUP37; propeller, trans 100.0 1.4E-36 4.8E-41 264.3 23.6 239 118-368 98-384 (393)
114 4a11_B DNA excision repair pro 100.0 3E-35 1E-39 257.9 31.8 287 65-377 97-404 (408)
115 4h5i_A Guanine nucleotide-exch 100.0 4.8E-36 1.6E-40 258.1 26.0 248 61-328 67-343 (365)
116 2w18_A PALB2, fancn, partner a 100.0 1.4E-34 4.9E-39 237.1 33.1 304 51-376 19-355 (356)
117 1l0q_A Surface layer protein; 100.0 7.7E-34 2.6E-38 247.6 38.1 307 44-382 9-346 (391)
118 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-36 5.7E-41 264.4 19.9 254 65-363 83-350 (588)
119 3vu4_A KMHSV2; beta-propeller 100.0 7E-34 2.4E-38 243.9 30.8 252 93-381 3-274 (355)
120 3mmy_A MRNA export factor; mRN 100.0 1.1E-33 3.9E-38 244.4 30.6 261 94-382 24-308 (368)
121 4gq1_A NUP37; propeller, trans 100.0 1.3E-34 4.5E-39 251.9 21.7 248 66-327 88-388 (393)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.8E-33 3E-37 245.1 33.3 249 62-327 97-390 (450)
123 3f3f_A Nucleoporin SEH1; struc 100.0 8.3E-33 2.8E-37 237.1 26.4 279 44-335 30-344 (351)
124 3bws_A Protein LP49; two-domai 100.0 2.4E-31 8.3E-36 235.0 35.1 285 66-382 59-394 (433)
125 3lrv_A PRE-mRNA-splicing facto 100.0 2.8E-32 9.7E-37 233.2 24.0 255 43-327 54-332 (343)
126 1nir_A Nitrite reductase; hemo 100.0 9.2E-31 3.1E-35 235.6 34.4 310 49-383 161-519 (543)
127 2w18_A PALB2, fancn, partner a 100.0 4.1E-30 1.4E-34 210.8 29.1 259 48-326 64-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.5E-31 3.2E-35 228.9 25.7 283 67-383 62-392 (415)
129 1nir_A Nitrite reductase; hemo 100.0 2.1E-29 7.1E-34 226.8 34.2 289 74-382 144-462 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.7E-30 2.6E-34 223.1 28.5 279 48-356 94-410 (415)
131 3u4y_A Uncharacterized protein 100.0 6.2E-28 2.1E-32 205.4 35.3 283 74-381 4-307 (331)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1.5E-28 5.3E-33 231.6 30.8 286 67-378 36-413 (741)
133 3vgz_A Uncharacterized protein 100.0 3.7E-27 1.3E-31 202.4 36.3 274 66-366 39-336 (353)
134 1ri6_A Putative isomerase YBHE 100.0 1.9E-27 6.6E-32 203.3 32.0 282 81-382 7-314 (343)
135 2ojh_A Uncharacterized protein 100.0 6E-28 2.1E-32 201.9 22.9 257 84-365 17-293 (297)
136 1pby_B Quinohemoprotein amine 100.0 1.1E-26 3.8E-31 198.1 28.8 269 80-382 2-314 (337)
137 2ecf_A Dipeptidyl peptidase IV 100.0 4.3E-27 1.5E-31 221.7 28.6 302 48-380 65-461 (741)
138 2z3z_A Dipeptidyl aminopeptida 100.0 1E-26 3.6E-31 217.9 30.8 298 51-380 47-437 (706)
139 1xfd_A DIP, dipeptidyl aminope 100.0 7.6E-28 2.6E-32 226.3 23.0 287 69-378 18-393 (723)
140 3u4y_A Uncharacterized protein 100.0 1.9E-25 6.5E-30 190.0 33.3 275 45-332 18-308 (331)
141 1k32_A Tricorn protease; prote 100.0 3E-26 1E-30 223.1 30.0 309 51-382 37-465 (1045)
142 3o4h_A Acylamino-acid-releasin 100.0 1.7E-26 5.8E-31 211.5 26.3 271 67-378 21-315 (582)
143 1k32_A Tricorn protease; prote 100.0 5.3E-26 1.8E-30 221.3 29.7 284 59-379 195-503 (1045)
144 2z3z_A Dipeptidyl aminopeptida 100.0 3E-26 1E-30 214.8 25.7 281 70-381 28-394 (706)
145 2ojh_A Uncharacterized protein 99.9 6.9E-26 2.4E-30 189.4 24.3 255 46-319 21-293 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-25 3.9E-30 211.5 28.3 300 46-363 36-429 (723)
147 3hfq_A Uncharacterized protein 99.9 1.9E-24 6.4E-29 185.1 32.1 280 88-383 15-324 (347)
148 1ri6_A Putative isomerase YBHE 99.9 1.1E-24 3.7E-29 186.2 29.5 274 64-356 34-335 (343)
149 3scy_A Hypothetical bacterial 99.9 4.2E-24 1.4E-28 183.9 33.1 289 80-383 14-344 (361)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 2.5E-24 8.6E-29 188.7 27.4 299 67-378 36-405 (434)
151 1pby_B Quinohemoprotein amine 99.9 2.3E-24 7.9E-29 183.7 26.5 265 46-336 10-318 (337)
152 1jmx_B Amine dehydrogenase; ox 99.9 3.4E-24 1.1E-28 183.6 27.2 277 72-382 4-329 (349)
153 3vgz_A Uncharacterized protein 99.9 1.6E-23 5.4E-28 179.8 29.9 252 110-382 41-307 (353)
154 3hfq_A Uncharacterized protein 99.9 1.7E-23 5.8E-28 179.2 29.9 256 63-332 35-323 (347)
155 3pe7_A Oligogalacturonate lyas 99.9 2E-24 6.8E-29 187.9 23.3 300 52-377 15-381 (388)
156 3scy_A Hypothetical bacterial 99.9 1.4E-22 4.9E-27 174.4 32.7 271 66-352 48-360 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 5.1E-24 1.7E-28 186.8 22.3 225 89-329 23-279 (434)
158 1z68_A Fibroblast activation p 99.9 1.4E-23 4.6E-28 197.2 20.2 320 46-381 35-446 (719)
159 1z68_A Fibroblast activation p 99.9 9.9E-24 3.4E-28 198.1 19.0 276 72-378 20-391 (719)
160 3o4h_A Acylamino-acid-releasin 99.9 3.3E-23 1.1E-27 189.7 21.8 236 109-382 21-278 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.5E-22 2.6E-26 169.9 28.1 285 81-381 4-344 (365)
162 1jmx_B Amine dehydrogenase; ox 99.9 9.4E-22 3.2E-26 168.4 25.8 275 45-336 19-333 (349)
163 3c5m_A Oligogalacturonate lyas 99.9 2.2E-22 7.6E-27 175.4 21.5 288 53-369 16-377 (396)
164 2oiz_A Aromatic amine dehydrog 99.9 1.5E-20 5.2E-25 160.9 32.4 284 48-356 32-360 (361)
165 2oiz_A Aromatic amine dehydrog 99.9 6.1E-21 2.1E-25 163.4 26.3 267 87-382 29-340 (361)
166 3azo_A Aminopeptidase; POP fam 99.9 4.4E-21 1.5E-25 178.5 27.2 299 60-382 16-373 (662)
167 1jof_A Carboxy-CIS,CIS-muconat 99.9 8.9E-21 3E-25 163.2 27.1 250 66-329 38-342 (365)
168 4a5s_A Dipeptidyl peptidase 4 99.9 1.2E-20 4.1E-25 177.3 26.2 271 69-362 18-381 (740)
169 2dg1_A DRP35, lactonase; beta 99.9 1E-19 3.5E-24 154.7 28.5 279 68-365 6-301 (333)
170 3fvz_A Peptidyl-glycine alpha- 99.9 2.9E-19 9.7E-24 151.4 30.0 252 67-328 23-322 (329)
171 2gop_A Trilobed protease; beta 99.9 6.3E-19 2.2E-23 150.7 30.3 260 69-381 16-333 (347)
172 1q7f_A NHL, brain tumor CG1071 99.9 1.5E-18 5.2E-23 144.1 31.6 243 65-329 27-281 (286)
173 2z2n_A Virginiamycin B lyase; 99.9 3.8E-17 1.3E-21 136.5 38.8 287 62-381 9-298 (299)
174 3fvz_A Peptidyl-glycine alpha- 99.9 1.5E-18 5E-23 147.0 30.4 250 110-378 24-322 (329)
175 1q7f_A NHL, brain tumor CG1071 99.9 4E-18 1.4E-22 141.6 32.1 241 110-379 30-281 (286)
176 3pe7_A Oligogalacturonate lyas 99.9 6.2E-20 2.1E-24 159.5 22.0 266 92-383 13-334 (388)
177 4a5s_A Dipeptidyl peptidase 4 99.9 5.4E-19 1.8E-23 166.1 29.5 321 46-381 35-452 (740)
178 1qks_A Cytochrome CD1 nitrite 99.9 3.1E-17 1.1E-21 147.3 38.3 305 52-383 182-543 (567)
179 3e5z_A Putative gluconolactona 99.8 1.5E-17 5.1E-22 138.8 29.6 252 99-383 17-291 (296)
180 1qks_A Cytochrome CD1 nitrite 99.8 1E-16 3.5E-21 144.0 36.7 284 77-379 165-478 (567)
181 2dg1_A DRP35, lactonase; beta 99.8 1E-16 3.4E-21 136.2 33.8 246 58-319 35-301 (333)
182 3dsm_A Uncharacterized protein 99.8 2.7E-17 9.3E-22 139.0 29.8 269 87-382 15-305 (328)
183 2xdw_A Prolyl endopeptidase; a 99.8 1.7E-17 5.9E-22 155.2 31.4 246 110-380 125-416 (710)
184 3azo_A Aminopeptidase; POP fam 99.8 2.5E-18 8.4E-23 160.0 22.3 256 60-333 60-374 (662)
185 1rwi_B Serine/threonine-protei 99.8 4.1E-17 1.4E-21 134.2 26.5 242 111-381 25-267 (270)
186 3e5z_A Putative gluconolactona 99.8 1.6E-16 5.5E-21 132.6 30.2 243 61-331 21-289 (296)
187 2xdw_A Prolyl endopeptidase; a 99.8 3.2E-17 1.1E-21 153.4 28.6 248 66-330 123-416 (710)
188 3no2_A Uncharacterized protein 99.8 2E-16 6.9E-21 129.7 29.8 255 78-350 4-272 (276)
189 1rwi_B Serine/threonine-protei 99.8 2.4E-17 8.3E-22 135.6 24.4 241 69-330 25-266 (270)
190 2mad_H Methylamine dehydrogena 99.8 1.2E-15 4.1E-20 130.6 35.6 278 75-383 28-355 (373)
191 2qc5_A Streptogramin B lactona 99.8 2.8E-15 9.5E-20 125.2 37.3 277 63-369 15-295 (300)
192 3c5m_A Oligogalacturonate lyas 99.8 1.1E-18 3.9E-23 151.9 16.9 261 92-383 13-334 (396)
193 3sjl_D Methylamine dehydrogena 99.8 1.8E-16 6.2E-21 133.8 29.6 279 50-354 62-384 (386)
194 2mad_H Methylamine dehydrogena 99.8 5.1E-15 1.8E-19 126.7 36.4 264 50-335 50-357 (373)
195 2bkl_A Prolyl endopeptidase; m 99.8 1.9E-16 6.4E-21 147.8 27.5 281 77-383 77-402 (695)
196 3dsm_A Uncharacterized protein 99.8 1.1E-15 3.7E-20 129.2 29.5 263 48-335 18-308 (328)
197 3sjl_D Methylamine dehydrogena 99.8 8.6E-16 3E-20 129.6 28.0 280 75-383 40-368 (386)
198 2bkl_A Prolyl endopeptidase; m 99.8 4.1E-17 1.4E-21 152.3 21.3 250 65-331 118-400 (695)
199 2gop_A Trilobed protease; beta 99.8 2.4E-16 8.2E-21 134.7 24.3 223 68-330 59-332 (347)
200 3no2_A Uncharacterized protein 99.8 9.3E-16 3.2E-20 125.8 26.6 218 120-362 4-231 (276)
201 2z2n_A Virginiamycin B lyase; 99.7 2.8E-14 9.5E-19 119.0 33.0 246 108-384 13-260 (299)
202 1yr2_A Prolyl oligopeptidase; 99.7 1.3E-15 4.4E-20 143.2 27.2 280 77-383 116-446 (741)
203 3c75_H MADH, methylamine dehyd 99.7 6.5E-15 2.2E-19 126.6 28.5 264 51-335 103-409 (426)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.2E-14 7.6E-19 120.6 31.5 248 108-380 16-301 (314)
205 3c75_H MADH, methylamine dehyd 99.7 2.4E-15 8.2E-20 129.3 24.8 278 77-383 82-407 (426)
206 3hrp_A Uncharacterized protein 99.7 3.4E-14 1.2E-18 123.4 32.0 248 68-326 131-408 (409)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 9.3E-15 3.2E-19 122.9 27.8 240 66-328 16-299 (314)
208 1yr2_A Prolyl oligopeptidase; 99.7 4.1E-15 1.4E-19 139.8 24.7 248 66-331 161-444 (741)
209 3g4e_A Regucalcin; six bladed 99.7 4.8E-13 1.6E-17 111.4 32.3 235 108-363 11-261 (297)
210 2qc5_A Streptogramin B lactona 99.7 7.6E-13 2.6E-17 110.3 32.7 244 109-383 19-264 (300)
211 2qe8_A Uncharacterized protein 99.7 3.3E-14 1.1E-18 121.0 23.1 275 57-369 9-316 (343)
212 3iuj_A Prolyl endopeptidase; h 99.7 2.5E-14 8.4E-19 133.3 24.0 249 65-331 126-408 (693)
213 3g4e_A Regucalcin; six bladed 99.7 3.2E-13 1.1E-17 112.4 28.5 233 63-318 8-262 (297)
214 3dr2_A Exported gluconolactona 99.7 2.7E-13 9.3E-18 113.4 27.4 244 100-369 35-302 (305)
215 1mda_H Methylamine dehydrogena 99.6 3.3E-14 1.1E-18 120.3 20.6 269 51-353 50-366 (368)
216 3hrp_A Uncharacterized protein 99.6 2.5E-12 8.4E-17 111.7 30.6 244 110-369 131-405 (409)
217 1xip_A Nucleoporin NUP159; bet 99.6 5.4E-14 1.8E-18 119.3 19.1 180 160-360 39-230 (388)
218 2ghs_A AGR_C_1268P; regucalcin 99.6 9.3E-12 3.2E-16 104.9 32.2 228 112-364 51-292 (326)
219 1xip_A Nucleoporin NUP159; bet 99.6 2.1E-14 7.2E-19 121.7 15.5 183 110-314 38-230 (388)
220 1mda_H Methylamine dehydrogena 99.6 1.6E-13 5.4E-18 116.2 19.8 258 90-383 47-351 (368)
221 3dr2_A Exported gluconolactona 99.6 3E-12 1E-16 107.0 27.0 236 61-325 38-303 (305)
222 3iuj_A Prolyl endopeptidase; h 99.6 1.2E-12 4.2E-17 121.9 25.5 243 110-382 129-409 (693)
223 1kb0_A Quinohemoprotein alcoho 99.6 1.3E-12 4.3E-17 120.8 24.9 283 79-383 77-512 (677)
224 2ghs_A AGR_C_1268P; regucalcin 99.6 9.9E-12 3.4E-16 104.8 28.0 226 69-319 50-293 (326)
225 2hz6_A Endoplasmic reticulum t 99.5 4.1E-16 1.4E-20 133.7 0.2 258 78-377 8-278 (369)
226 1yiq_A Quinohemoprotein alcoho 99.5 2.2E-12 7.5E-17 119.4 24.7 282 79-382 70-509 (689)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.6E-11 8.8E-16 104.6 28.9 272 78-382 52-341 (376)
228 2ece_A 462AA long hypothetical 99.5 1.5E-10 5E-15 98.6 32.0 233 119-362 93-399 (462)
229 3hxj_A Pyrrolo-quinoline quino 99.5 3E-12 1E-16 108.4 21.3 278 49-369 42-319 (330)
230 1kb0_A Quinohemoprotein alcoho 99.5 1.3E-11 4.4E-16 114.1 26.3 262 79-360 128-536 (677)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.9E-10 6.6E-15 99.1 31.0 260 78-369 102-373 (376)
232 1yiq_A Quinohemoprotein alcoho 99.5 2.2E-11 7.4E-16 112.8 26.4 262 79-360 121-534 (689)
233 1npe_A Nidogen, entactin; glyc 99.5 6.2E-10 2.1E-14 91.0 32.4 251 80-356 2-263 (267)
234 2hz6_A Endoplasmic reticulum t 99.5 1.4E-14 4.7E-19 124.3 2.9 224 120-380 8-238 (369)
235 2qe8_A Uncharacterized protein 99.4 1.1E-11 3.6E-16 105.4 19.5 243 110-381 17-281 (343)
236 3hxj_A Pyrrolo-quinoline quino 99.4 3.9E-12 1.3E-16 107.6 16.8 263 72-381 24-286 (330)
237 1fwx_A Nitrous oxide reductase 99.4 2.1E-10 7.1E-15 101.2 22.6 275 82-382 18-435 (595)
238 1npe_A Nidogen, entactin; glyc 99.3 1.1E-08 3.8E-13 83.5 30.6 237 122-382 2-242 (267)
239 3nol_A Glutamine cyclotransfer 99.3 1.1E-09 3.9E-14 86.4 22.1 191 160-363 44-244 (262)
240 2iwa_A Glutamine cyclotransfer 99.3 1.9E-09 6.3E-14 86.3 23.5 205 160-379 22-238 (266)
241 1kv9_A Type II quinohemoprotei 99.3 1.5E-09 5E-14 100.3 25.9 282 79-382 66-492 (668)
242 2ece_A 462AA long hypothetical 99.3 9.9E-09 3.4E-13 87.5 27.9 227 77-316 93-399 (462)
243 2ad6_A Methanol dehydrogenase 99.3 5.7E-09 2E-13 94.4 26.4 284 79-383 62-499 (571)
244 4a2l_A BT_4663, two-component 99.3 1.3E-07 4.6E-12 89.7 36.7 292 70-384 175-486 (795)
245 1w6s_A Methanol dehydrogenase 99.3 9E-09 3.1E-13 93.1 27.3 286 79-383 62-508 (599)
246 3nok_A Glutaminyl cyclase; bet 99.2 5.9E-09 2E-13 82.3 22.2 189 161-363 57-254 (268)
247 1fwx_A Nitrous oxide reductase 99.2 5.7E-10 2E-14 98.4 17.5 238 77-330 99-433 (595)
248 4a2l_A BT_4663, two-component 99.2 1.3E-07 4.5E-12 89.7 35.0 290 67-381 214-529 (795)
249 2iwa_A Glutamine cyclotransfer 99.2 4.3E-08 1.5E-12 78.5 26.6 210 101-329 11-238 (266)
250 1kv9_A Type II quinohemoprotei 99.2 8.4E-09 2.9E-13 95.3 25.7 243 79-337 117-497 (668)
251 2p4o_A Hypothetical protein; p 99.2 3.9E-07 1.3E-11 75.9 33.4 247 56-319 21-279 (306)
252 3mbr_X Glutamine cyclotransfer 99.2 2.2E-08 7.6E-13 78.4 23.3 192 159-363 21-223 (243)
253 2fp8_A Strictosidine synthase; 99.2 8.9E-08 3E-12 80.4 28.8 242 68-328 19-313 (322)
254 1flg_A Protein (quinoprotein e 99.2 5.5E-08 1.9E-12 88.1 29.0 285 80-383 69-521 (582)
255 2p4o_A Hypothetical protein; p 99.2 9.7E-08 3.3E-12 79.5 27.4 227 110-364 32-278 (306)
256 2ad6_A Methanol dehydrogenase 99.1 3.1E-08 1E-12 89.7 25.5 261 79-359 115-522 (571)
257 3v9f_A Two-component system se 99.1 5.9E-07 2E-11 85.0 35.3 294 67-384 257-574 (781)
258 3v64_C Agrin; beta propeller, 99.1 4.4E-07 1.5E-11 76.9 30.7 246 67-335 33-282 (349)
259 2fp8_A Strictosidine synthase; 99.1 1.5E-07 5E-12 79.1 27.5 248 110-379 19-314 (322)
260 3nol_A Glutamine cyclotransfer 99.1 6.3E-08 2.2E-12 76.5 22.8 198 56-271 30-245 (262)
261 1k3i_A Galactose oxidase precu 99.1 3.9E-08 1.3E-12 91.0 25.3 275 72-363 190-530 (656)
262 3v65_B Low-density lipoprotein 99.1 5.2E-07 1.8E-11 77.6 30.2 245 69-335 78-325 (386)
263 1w6s_A Methanol dehydrogenase 99.1 8.2E-08 2.8E-12 86.9 24.7 255 82-357 124-529 (599)
264 3v64_C Agrin; beta propeller, 99.1 1.9E-06 6.3E-11 73.1 31.6 238 113-380 37-277 (349)
265 3nok_A Glutaminyl cyclase; bet 99.1 1.8E-07 6.2E-12 73.9 23.2 186 111-317 56-254 (268)
266 3v9f_A Two-component system se 99.1 2.3E-06 7.7E-11 81.1 35.1 292 67-384 312-617 (781)
267 1ijq_A LDL receptor, low-densi 99.0 5.4E-06 1.8E-10 69.2 32.5 239 81-335 3-245 (316)
268 1ijq_A LDL receptor, low-densi 99.0 4.5E-06 1.5E-10 69.7 31.7 224 131-380 10-240 (316)
269 1flg_A Protein (quinoprotein e 99.0 8.7E-07 3E-11 80.3 28.4 261 79-358 117-543 (582)
270 3mbr_X Glutamine cyclotransfer 99.0 2.2E-06 7.4E-11 67.2 26.6 189 110-318 21-224 (243)
271 3v65_B Low-density lipoprotein 99.0 3.1E-06 1E-10 72.8 30.2 237 114-380 81-320 (386)
272 3qqz_A Putative uncharacterize 99.0 5.3E-06 1.8E-10 66.0 29.6 211 61-279 20-251 (255)
273 3qqz_A Putative uncharacterize 99.0 1.9E-06 6.5E-11 68.6 26.1 208 153-369 21-248 (255)
274 3p5b_L Low density lipoprotein 99.0 1.3E-05 4.4E-10 69.2 34.8 240 81-335 85-327 (400)
275 3tc9_A Hypothetical hydrolase; 98.9 1.1E-06 3.7E-11 76.7 25.8 245 69-327 138-429 (430)
276 3p5b_L Low density lipoprotein 98.9 1.3E-05 4.6E-10 69.1 31.3 232 123-381 85-323 (400)
277 3sov_A LRP-6, low-density lipo 98.9 1E-05 3.5E-10 67.4 28.5 235 81-335 6-245 (318)
278 4hw6_A Hypothetical protein, I 98.9 3.8E-06 1.3E-10 73.2 26.9 245 69-327 140-432 (433)
279 2xe4_A Oligopeptidase B; hydro 98.9 2.5E-06 8.4E-11 80.2 27.5 196 69-279 175-398 (751)
280 3sov_A LRP-6, low-density lipo 98.8 2E-05 6.8E-10 65.6 27.9 226 130-381 12-241 (318)
281 3tc9_A Hypothetical hydrolase; 98.8 2.5E-06 8.6E-11 74.4 23.3 243 111-369 138-425 (430)
282 1k3i_A Galactose oxidase precu 98.8 1E-06 3.5E-11 81.6 21.5 248 114-380 190-499 (656)
283 3m0c_C LDL receptor, low-densi 98.8 4.7E-05 1.6E-09 71.3 31.5 248 71-335 388-639 (791)
284 2xbg_A YCF48-like protein; pho 98.8 5.6E-05 1.9E-09 63.4 34.5 277 67-369 35-317 (327)
285 3ei3_A DNA damage-binding prot 98.7 0.00013 4.5E-09 71.3 34.8 287 67-380 553-915 (1158)
286 2xzh_A Clathrin heavy chain 1; 98.7 5.5E-05 1.9E-09 61.4 28.9 269 88-384 48-338 (365)
287 3s94_A LRP-6, low-density lipo 98.7 0.00015 5E-09 66.3 34.4 203 67-283 39-245 (619)
288 3kya_A Putative phosphatase; s 98.7 5.7E-05 2E-09 66.1 28.3 254 69-333 140-480 (496)
289 4hw6_A Hypothetical protein, I 98.7 2.1E-05 7E-10 68.6 25.6 246 111-377 140-432 (433)
290 4a0p_A LRP6, LRP-6, low-densit 98.7 0.00018 6.3E-09 65.7 32.9 228 81-331 8-240 (628)
291 1n7d_A LDL receptor, low-densi 98.7 6.6E-07 2.3E-11 83.0 16.1 233 88-335 385-621 (699)
292 2xe4_A Oligopeptidase B; hydro 98.6 5.5E-05 1.9E-09 71.1 28.4 197 111-326 175-398 (751)
293 3m0c_C LDL receptor, low-densi 98.6 0.00019 6.4E-09 67.3 30.6 224 130-379 403-633 (791)
294 1bpo_A Protein (clathrin); cla 98.6 0.0002 6.9E-09 60.5 30.7 270 87-384 46-337 (494)
295 3amr_A 3-phytase; beta-propell 98.6 6.1E-05 2.1E-09 62.3 23.6 186 172-377 41-262 (355)
296 2p9w_A MAL S 1 allergenic prot 98.5 0.00012 3.9E-09 60.1 23.3 170 156-328 10-215 (334)
297 3s94_A LRP-6, low-density lipo 98.5 0.00031 1E-08 64.2 28.5 235 81-334 11-249 (619)
298 1n7d_A LDL receptor, low-densi 98.5 1.9E-06 6.4E-11 80.0 13.8 225 130-381 385-617 (699)
299 2ism_A Putative oxidoreductase 98.4 0.00023 8E-09 60.2 24.7 233 67-316 30-333 (352)
300 3kya_A Putative phosphatase; s 98.4 0.00032 1.1E-08 61.4 25.9 250 112-379 141-476 (496)
301 3amr_A 3-phytase; beta-propell 98.4 0.00029 1E-08 58.3 23.1 195 79-289 40-272 (355)
302 3sre_A PON1, serum paraoxonase 98.4 0.00015 5.3E-09 60.7 21.7 220 129-358 81-328 (355)
303 2p9w_A MAL S 1 allergenic prot 98.3 0.00077 2.6E-08 55.3 27.1 208 68-283 13-267 (334)
304 3a9g_A Putative uncharacterize 98.3 0.001 3.5E-08 56.3 26.1 234 109-362 28-330 (354)
305 2ism_A Putative oxidoreductase 98.3 0.00092 3.1E-08 56.5 24.6 231 109-362 30-333 (352)
306 2vpj_A Kelch-like protein 12; 98.2 0.00034 1.2E-08 57.8 20.9 232 78-330 14-280 (301)
307 3ott_A Two-component system se 98.2 0.0035 1.2E-07 59.1 34.7 292 69-383 192-507 (758)
308 3a9g_A Putative uncharacterize 98.2 0.0017 5.7E-08 54.9 25.2 236 67-316 28-330 (354)
309 2vpj_A Kelch-like protein 12; 98.2 0.00064 2.2E-08 56.1 21.9 188 171-380 63-280 (301)
310 2xn4_A Kelch-like protein 2; s 98.2 0.00057 2E-08 56.5 20.7 228 80-331 17-279 (302)
311 3sre_A PON1, serum paraoxonase 98.2 0.0011 3.8E-08 55.6 21.8 190 160-364 51-287 (355)
312 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0059 2E-07 55.9 40.0 158 207-380 389-551 (628)
313 2xn4_A Kelch-like protein 2; s 98.1 0.0015 5E-08 54.0 21.6 188 171-380 62-278 (302)
314 3ii7_A Kelch-like protein 7; p 98.1 0.002 6.7E-08 53.3 22.2 226 81-330 14-274 (306)
315 2g8s_A Glucose/sorbosone dehyd 98.0 0.0024 8.3E-08 54.0 22.3 238 67-315 17-340 (353)
316 2xbg_A YCF48-like protein; pho 98.0 0.004 1.4E-07 52.0 31.1 236 110-368 36-273 (327)
317 3ii7_A Kelch-like protein 7; p 98.0 0.0032 1.1E-07 52.0 22.5 230 121-380 12-274 (306)
318 2xzh_A Clathrin heavy chain 1; 98.0 0.004 1.4E-07 50.7 29.9 235 73-328 72-332 (365)
319 1bpo_A Protein (clathrin); cla 97.9 0.0094 3.2E-07 50.7 28.8 236 73-329 71-332 (494)
320 1zgk_A Kelch-like ECH-associat 97.9 0.0019 6.6E-08 53.5 18.3 229 78-331 24-290 (308)
321 4asc_A Kelch repeat and BTB do 97.8 0.0099 3.4E-07 49.3 23.7 227 81-332 7-281 (315)
322 1xi4_A Clathrin heavy chain; a 97.8 0.0035 1.2E-07 61.3 20.4 268 88-384 47-337 (1630)
323 2g8s_A Glucose/sorbosone dehyd 97.8 0.013 4.4E-07 49.5 28.3 253 110-366 18-346 (353)
324 1zgk_A Kelch-like ECH-associat 97.8 0.0065 2.2E-07 50.2 19.8 187 171-380 71-289 (308)
325 3ott_A Two-component system se 97.7 0.031 1.1E-06 52.7 34.5 276 68-368 63-347 (758)
326 4asc_A Kelch repeat and BTB do 97.7 0.0089 3E-07 49.6 20.1 215 123-364 7-253 (315)
327 3pbp_A Nucleoporin NUP82; beta 97.6 0.013 4.4E-07 49.8 19.3 148 218-369 31-207 (452)
328 3ei3_A DNA damage-binding prot 97.6 0.065 2.2E-06 52.7 35.6 177 182-378 808-999 (1158)
329 3pbp_A Nucleoporin NUP82; beta 97.6 0.017 5.7E-07 49.1 19.3 142 180-324 40-208 (452)
330 2uvk_A YJHT; unknown function, 97.5 0.025 8.5E-07 47.8 20.1 145 181-335 168-349 (357)
331 2woz_A Kelch repeat and BTB do 97.5 0.03 1E-06 46.4 20.2 177 171-365 57-264 (318)
332 3das_A Putative oxidoreductase 97.5 0.034 1.1E-06 46.5 27.8 245 59-315 23-325 (347)
333 2woz_A Kelch repeat and BTB do 97.4 0.045 1.5E-06 45.3 24.7 229 81-334 18-293 (318)
334 2be1_A Serine/threonine-protei 97.4 0.00086 2.9E-08 55.7 8.9 199 172-382 11-235 (339)
335 1xi4_A Clathrin heavy chain; a 97.3 0.024 8.2E-07 55.8 19.1 237 75-332 73-335 (1630)
336 2be1_A Serine/threonine-protei 97.3 0.015 5.3E-07 48.3 15.7 198 80-286 11-236 (339)
337 3das_A Putative oxidoreductase 97.3 0.06 2E-06 45.0 29.1 241 108-362 30-326 (347)
338 1tl2_A L10, protein (tachylect 97.2 0.014 4.8E-07 44.7 13.4 149 159-321 41-203 (236)
339 2uvk_A YJHT; unknown function, 97.2 0.056 1.9E-06 45.6 18.4 198 78-290 65-351 (357)
340 1tl2_A L10, protein (tachylect 97.1 0.032 1.1E-06 42.8 14.3 180 172-368 5-204 (236)
341 2zwa_A Leucine carboxyl methyl 97.0 0.13 4.6E-06 47.7 20.9 202 77-285 396-639 (695)
342 3s25_A Hypothetical 7-bladed b 96.8 0.15 5E-06 41.8 21.2 140 165-330 59-218 (302)
343 2zwa_A Leucine carboxyl methyl 96.8 0.25 8.5E-06 46.0 20.7 198 119-332 396-639 (695)
344 1cru_A Protein (soluble quinop 96.7 0.094 3.2E-06 45.9 16.4 110 251-363 27-163 (454)
345 1cru_A Protein (soluble quinop 96.5 0.39 1.3E-05 42.0 30.8 112 109-226 26-162 (454)
346 3b7f_A Glycosyl hydrolase, BNR 96.3 0.47 1.6E-05 40.6 25.4 270 68-352 55-391 (394)
347 2wg3_C Hedgehog-interacting pr 96.0 0.69 2.3E-05 40.5 26.6 114 110-227 14-158 (463)
348 3qhy_B Beta-lactamase inhibito 95.9 0.51 1.7E-05 38.2 18.2 223 69-329 25-247 (282)
349 3sbq_A Nitrous-oxide reductase 95.5 0.37 1.2E-05 42.7 13.3 126 230-362 299-453 (638)
350 3qhy_B Beta-lactamase inhibito 95.5 0.81 2.8E-05 37.0 18.7 222 111-378 25-246 (282)
351 3s25_A Hypothetical 7-bladed b 95.4 0.87 3E-05 37.3 23.5 177 73-282 58-256 (302)
352 3b7f_A Glycosyl hydrolase, BNR 95.2 1.3 4.3E-05 37.9 28.3 280 80-368 23-366 (394)
353 3sbq_A Nitrous-oxide reductase 94.3 0.066 2.2E-06 47.2 5.6 110 207-316 323-453 (638)
354 1bb1_B Designed, thermostable 91.9 0.51 1.7E-05 22.3 4.4 29 3-31 2-30 (36)
355 2wg3_C Hedgehog-interacting pr 91.9 6 0.00021 34.6 28.6 53 68-120 14-79 (463)
356 1sqj_A OXG-RCBH, oligoxylogluc 91.9 8.6 0.00029 36.4 23.6 157 67-228 14-190 (789)
357 3q6k_A 43.2 kDa salivary prote 91.9 5.2 0.00018 33.8 22.2 175 181-362 123-342 (381)
358 4gq2_M Nucleoporin NUP120; bet 90.3 14 0.00047 35.9 22.9 39 252-290 237-275 (950)
359 1zi0_A DNA gyrase subunit A; b 90.0 7 0.00024 32.0 24.8 242 77-328 1-277 (307)
360 3uc1_A DNA gyrase subunit A; D 89.9 7.4 0.00025 32.1 22.9 242 80-328 4-279 (327)
361 1sqj_A OXG-RCBH, oligoxylogluc 89.6 14 0.00048 34.9 21.7 159 158-318 14-190 (789)
362 3ra3_B P2F; coiled coil domain 89.1 0.83 2.8E-05 20.3 3.3 25 5-29 2-26 (28)
363 3c3f_A Alpha/beta peptide with 89.1 1.2 4E-05 21.8 4.7 31 3-33 1-31 (34)
364 1kd8_B GABH BLL, GCN4 acid bas 89.0 1.2 3.9E-05 22.2 4.1 31 3-33 1-31 (36)
365 3m48_A General control protein 88.9 1.2 4.1E-05 21.7 4.1 29 4-32 1-29 (33)
366 2yy0_A C-MYC-binding protein; 88.8 1 3.4E-05 25.4 4.5 32 3-34 19-50 (53)
367 2oxj_A Hybrid alpha/beta pepti 88.7 1.3 4.4E-05 21.7 4.8 31 3-33 1-31 (34)
368 4dzn_A Coiled-coil peptide CC- 88.4 1.1 3.8E-05 20.7 4.4 28 4-31 3-30 (33)
369 4gq2_M Nucleoporin NUP120; bet 88.3 14 0.00049 35.8 14.9 38 160-198 237-274 (950)
370 2wq1_A General control protein 87.3 1.6 5.4E-05 21.2 4.8 30 4-33 1-30 (33)
371 2cn3_A Xyloglucanase, beta-1,4 87.1 20 0.00067 33.6 21.2 110 160-270 24-152 (737)
372 1fmh_A General control protein 87.1 1.4 4.8E-05 20.4 4.6 28 4-31 2-29 (33)
373 2pnv_A Small conductance calci 86.7 0.41 1.4E-05 25.5 1.9 28 6-33 12-39 (43)
374 3ljm_A Coil Ser L9C; de novo d 86.3 1.5 5.1E-05 20.0 4.3 26 5-30 3-28 (31)
375 1dip_A Delta-sleep-inducing pe 86.3 3.2 0.00011 24.7 5.7 40 2-41 14-53 (78)
376 1kd8_A GABH AIV, GCN4 acid bas 86.2 1.6 5.6E-05 21.6 3.7 30 4-33 2-31 (36)
377 3ra3_A P1C; coiled coil domain 84.8 1.7 5.9E-05 19.3 3.3 24 6-29 3-26 (28)
378 2bni_A General control protein 84.5 2.4 8.4E-05 20.8 4.2 31 3-33 1-31 (34)
379 1uo4_A General control protein 84.2 2.5 8.7E-05 20.7 4.4 30 4-33 2-31 (34)
380 3no0_A DNA gyrase subunit A; D 84.2 15 0.0005 29.5 21.0 202 69-280 25-245 (276)
381 2pnv_A Small conductance calci 83.9 3.4 0.00012 22.0 4.8 27 2-28 15-41 (43)
382 3c3g_A Alpha/beta peptide with 83.8 2.6 8.9E-05 20.5 4.7 30 4-33 1-30 (33)
383 3azd_A Short alpha-tropomyosin 83.7 0.75 2.6E-05 23.6 2.0 32 2-33 3-34 (37)
384 3efg_A Protein SLYX homolog; x 83.6 2.1 7.2E-05 26.5 4.4 34 4-37 29-62 (78)
385 3zwu_A Alkaline phosphatase PH 80.9 5.9 0.0002 35.8 8.0 60 299-361 477-548 (592)
386 1wp5_A Topoisomerase IV; broke 80.9 22 0.00076 29.2 23.5 244 77-328 3-277 (323)
387 1suu_A DNA gyrase subunit A; t 80.7 22 0.00075 29.1 23.5 194 172-378 9-231 (312)
388 1hjb_A Ccaat/enhancer binding 80.1 1.8 6E-05 27.4 3.2 33 3-35 43-75 (87)
389 4a9v_A PHOX; hydrolase, beta-p 79.6 11 0.00038 33.7 9.1 62 298-362 476-549 (592)
390 1zvu_A Topoisomerase IV subuni 78.5 41 0.0014 31.0 13.3 152 77-238 470-633 (716)
391 1a93_B MAX protein, coiled coi 77.8 2.6 8.8E-05 20.9 2.6 26 2-27 6-31 (34)
392 4hvt_A Ritya.17583.B, post-pro 77.3 47 0.0016 30.9 23.0 241 117-377 137-429 (711)
393 4hvt_A Ritya.17583.B, post-pro 76.8 48 0.0017 30.8 24.8 240 69-327 130-429 (711)
394 3twe_A Alpha4H; unknown functi 76.7 3.8 0.00013 18.1 3.8 15 17-31 8-22 (27)
395 3zwu_A Alkaline phosphatase PH 76.5 13 0.00043 33.7 8.8 59 253-315 478-548 (592)
396 1t2k_D Cyclic-AMP-dependent tr 76.5 2.9 0.0001 24.4 3.3 28 4-31 30-57 (61)
397 1gu4_A CAAT/enhancer binding p 76.5 2.5 8.7E-05 26.1 3.1 31 3-33 43-73 (78)
398 2hy6_A General control protein 75.8 5.5 0.00019 19.5 4.2 29 4-32 2-30 (34)
399 1ci6_A Transcription factor AT 75.7 2.6 8.7E-05 24.8 2.8 29 4-32 31-59 (63)
400 3he5_B Synzip2; heterodimeric 74.8 4.5 0.00015 20.9 3.2 32 2-33 9-40 (52)
401 3mq7_A Bone marrow stromal ant 74.5 4.1 0.00014 26.9 3.7 31 4-34 72-102 (121)
402 2r2v_A GCN4 leucine zipper; co 73.2 6.7 0.00023 19.3 4.6 30 4-33 2-31 (34)
403 3no0_A DNA gyrase subunit A; D 72.5 35 0.0012 27.3 19.0 198 110-328 24-246 (276)
404 2wg5_A General control protein 72.2 4.7 0.00016 26.9 3.8 28 4-31 8-35 (109)
405 4a9v_A PHOX; hydrolase, beta-p 72.1 31 0.0011 30.9 9.9 60 68-127 476-548 (592)
406 4fhn_B Nucleoporin NUP120; pro 71.7 15 0.0005 36.6 8.8 37 300-336 240-276 (1139)
407 2wt7_A Proto-oncogene protein 71.3 4.4 0.00015 23.8 3.2 26 5-30 32-57 (63)
408 1dh3_A Transcription factor CR 70.8 11 0.00037 21.4 4.6 29 5-33 24-52 (55)
409 3kci_A Probable E3 ubiquitin-p 70.7 47 0.0016 28.0 27.5 249 69-327 54-344 (389)
410 3vmx_A Voltage-gated hydrogen 70.4 9.9 0.00034 20.6 4.0 23 4-26 19-41 (48)
411 1g6u_A Domain swapped dimer; d 69.8 9.1 0.00031 19.4 3.7 24 10-33 20-43 (48)
412 3f7f_A Nucleoporin NUP120; nuc 68.4 9.4 0.00032 35.2 6.1 38 68-107 222-259 (729)
413 3uc1_A DNA gyrase subunit A; D 67.9 50 0.0017 27.2 23.2 239 122-369 4-274 (327)
414 2dgc_A Protein (GCN4); basic d 67.9 7.3 0.00025 22.8 3.6 30 4-33 31-60 (63)
415 1go4_E MAD1 (mitotic arrest de 67.7 7 0.00024 25.4 3.7 34 3-36 12-45 (100)
416 4fhn_B Nucleoporin NUP120; pro 67.5 4.7 0.00016 40.0 4.3 39 69-107 239-277 (1139)
417 2l5g_A GPS2 protein, G protein 67.2 10 0.00036 19.1 4.4 25 4-28 9-33 (38)
418 3nmd_A CGMP dependent protein 66.1 11 0.00037 22.7 4.0 23 11-33 41-63 (72)
419 1jnm_A Proto-oncogene C-JUN; B 65.7 2.8 9.7E-05 24.5 1.5 28 5-32 24-51 (62)
420 2cn3_A Xyloglucanase, beta-1,4 65.6 89 0.003 29.2 25.4 112 111-227 24-152 (737)
421 3q6k_A 43.2 kDa salivary prote 65.4 62 0.0021 27.3 22.7 153 158-315 151-341 (381)
422 3viq_B Mating-type switching p 64.7 16 0.00055 22.8 4.7 30 5-34 3-32 (85)
423 1uuj_A Platelet-activating fac 64.1 3.4 0.00012 26.1 1.7 25 4-28 59-83 (88)
424 2yy0_A C-MYC-binding protein; 63.4 4.5 0.00015 22.8 2.0 21 5-25 28-48 (53)
425 1zxa_A CGMP-dependent protein 63.3 11 0.00037 22.4 3.6 24 11-34 26-49 (67)
426 3f7f_A Nucleoporin NUP120; nuc 62.5 1E+02 0.0034 28.7 13.6 36 300-337 224-259 (729)
427 3m91_A Proteasome-associated A 61.8 8.6 0.00029 21.4 2.8 22 7-28 13-34 (51)
428 3nmd_A CGMP dependent protein 61.4 13 0.00046 22.3 3.8 28 4-31 20-47 (72)
429 2akf_A Coronin-1A; coiled coil 61.2 12 0.0004 17.5 3.6 24 7-30 3-26 (32)
430 1nkp_B MAX protein, MYC proto- 60.7 17 0.00058 22.7 4.6 30 5-34 49-78 (83)
431 1zvu_A Topoisomerase IV subuni 59.9 1.1E+02 0.0037 28.3 17.1 81 109-190 553-633 (716)
432 3mq7_A Bone marrow stromal ant 59.7 9.5 0.00033 25.2 3.2 29 4-32 79-107 (121)
433 2wuj_A Septum site-determining 59.1 12 0.00041 21.4 3.3 26 7-32 24-49 (57)
434 4g1a_A AQ-C16C19 peptide; heli 58.8 6.6 0.00022 18.0 1.7 26 5-30 2-27 (32)
435 1dip_A Delta-sleep-inducing pe 58.5 6.1 0.00021 23.5 2.0 24 2-25 21-44 (78)
436 1nlw_A MAD protein, MAX dimeri 58.4 20 0.00069 22.2 4.5 29 5-33 49-77 (80)
437 2k48_A Nucleoprotein; viral pr 58.0 17 0.00059 23.5 4.1 30 3-32 35-64 (107)
438 1zxa_A CGMP-dependent protein 57.7 10 0.00036 22.4 2.9 29 4-32 26-54 (67)
439 3a2a_A Voltage-gated hydrogen 57.1 23 0.00079 19.7 4.0 15 8-22 30-44 (58)
440 2l5g_B Putative uncharacterize 57.1 19 0.00066 18.8 4.5 28 4-31 10-37 (42)
441 1t6f_A Geminin; coiled-coil, c 56.7 17 0.00059 18.1 4.2 23 7-29 11-33 (37)
442 3cvf_A Homer-3, homer protein 56.2 24 0.00084 21.7 4.4 28 3-30 13-40 (79)
443 2z5i_A TM, general control pro 55.6 25 0.00085 19.6 4.5 29 4-32 13-41 (52)
444 1jcd_A Major outer membrane li 55.5 15 0.00052 20.5 3.1 28 4-31 5-32 (52)
445 1zme_C Proline utilization tra 55.1 7.9 0.00027 23.1 2.3 20 5-24 46-65 (70)
446 1k1f_A Breakpoint cluster regi 54.8 29 0.001 20.2 4.8 31 3-33 26-56 (72)
447 2oqq_A Transcription factor HY 54.3 22 0.00074 18.5 4.6 26 5-30 5-30 (42)
448 2ic6_A Nucleocapsid protein; h 53.7 30 0.001 21.2 4.5 30 3-32 5-34 (78)
449 1wt6_A Myotonin-protein kinase 53.5 24 0.00082 21.7 4.0 25 5-29 47-71 (81)
450 1deb_A APC protein, adenomatou 53.2 26 0.00088 19.0 4.4 31 3-33 3-33 (54)
451 3al9_A Plexin-A2; beta-propell 52.9 41 0.0014 30.0 7.3 68 300-369 402-476 (539)
452 1suu_A DNA gyrase subunit A; t 52.5 93 0.0032 25.3 28.8 203 119-328 6-231 (312)
453 1ci6_A Transcription factor AT 52.3 22 0.00075 20.8 3.7 30 4-33 24-53 (63)
454 3cve_A Homer protein homolog 1 51.1 17 0.00059 21.9 3.1 27 4-30 8-34 (72)
455 2jo8_A Serine/threonine-protei 49.9 31 0.0011 19.1 4.6 25 4-28 11-35 (51)
456 2lw1_A ABC transporter ATP-bin 49.6 32 0.0011 21.8 4.5 31 7-37 19-49 (89)
457 3viq_B Mating-type switching p 49.3 6 0.00021 24.7 1.0 24 2-25 7-30 (85)
458 1am9_A Srebp-1A, protein (ster 49.1 34 0.0012 21.2 4.5 25 5-29 52-76 (82)
459 1t2k_D Cyclic-AMP-dependent tr 48.9 37 0.0013 19.6 4.6 30 4-33 23-52 (61)
460 2ic9_A Nucleocapsid protein; h 48.8 42 0.0014 21.4 4.7 29 3-31 5-33 (96)
461 1q47_A Semaphorin 3A; beta pro 48.1 64 0.0022 28.4 7.7 68 300-369 406-487 (495)
462 3al9_A Plexin-A2; beta-propell 47.1 61 0.0021 29.0 7.4 69 252-323 401-476 (539)
463 1zi0_A DNA gyrase subunit A; b 46.9 1.1E+02 0.0039 24.7 27.4 242 119-369 1-272 (307)
464 2xdj_A Uncharacterized protein 46.3 21 0.00072 22.3 3.1 25 5-29 29-53 (83)
465 2jee_A YIIU; FTSZ, septum, coi 45.7 23 0.00078 21.9 3.1 9 6-14 30-38 (81)
466 4gz8_A Semaphorin-3A; multi-do 45.6 75 0.0026 29.3 7.9 57 311-369 431-495 (667)
467 3l6v_A GYRA, DNA gyrase subuni 45.6 1.4E+02 0.0046 25.1 28.0 157 75-237 3-179 (370)
468 3zwh_Q Myosin-9; Ca-binding pr 45.4 21 0.00072 19.2 2.6 22 4-25 7-28 (45)
469 1jnm_A Proto-oncogene C-JUN; B 45.2 44 0.0015 19.4 4.6 30 3-32 29-58 (62)
470 3m9b_A Proteasome-associated A 45.1 23 0.0008 27.5 3.9 17 16-32 74-90 (251)
471 2oa5_A Hypothetical protein BQ 45.1 16 0.00054 24.0 2.5 26 3-28 8-33 (110)
472 1nlw_A MAD protein, MAX dimeri 45.1 12 0.0004 23.3 1.9 20 7-26 58-77 (80)
473 1nkp_B MAX protein, MYC proto- 44.8 13 0.00045 23.2 2.1 23 5-27 56-78 (83)
474 1hjb_A Ccaat/enhancer binding 44.3 32 0.0011 21.7 3.7 31 4-34 37-67 (87)
475 2aze_B Transcription factor E2 44.2 66 0.0023 21.2 6.5 31 3-33 6-36 (106)
476 1gd2_E Transcription factor PA 44.1 15 0.00051 22.1 2.1 11 6-16 32-42 (70)
477 3efg_A Protein SLYX homolog; x 44.1 24 0.00083 21.7 3.2 24 3-26 14-37 (78)
478 3tq2_A KE1; parallel three hel 44.1 24 0.00081 16.7 2.3 22 5-26 3-24 (36)
479 1olz_A Semaphorin 4D; developm 43.6 83 0.0028 29.0 7.9 57 311-369 417-477 (663)
480 3pp5_A BRK1, protein brick1; t 43.0 19 0.00066 21.7 2.5 24 3-26 45-68 (73)
481 2zvf_A Alanyl-tRNA synthetase; 42.6 25 0.00087 25.5 3.8 25 4-28 33-57 (171)
482 2wt7_A Proto-oncogene protein 42.3 50 0.0017 19.2 4.6 30 4-33 24-53 (63)
483 3nvq_A Semaphorin-7A; beta-pro 41.8 82 0.0028 28.4 7.4 58 310-369 381-444 (590)
484 1p9i_A Cortexillin I/GCN4 hybr 40.7 28 0.00095 15.9 3.7 24 6-29 2-25 (31)
485 1go4_E MAD1 (mitotic arrest de 40.6 22 0.00075 23.1 2.6 26 3-28 19-44 (100)
486 1gu4_A CAAT/enhancer binding p 40.4 41 0.0014 20.7 3.7 31 4-34 37-67 (78)
487 3a0f_A Xyloglucanase; beta-pro 40.4 2.4E+02 0.0081 26.5 27.1 160 65-229 18-203 (763)
488 1q47_A Semaphorin 3A; beta pro 39.2 98 0.0033 27.3 7.4 68 253-323 406-487 (495)
489 3cve_A Homer protein homolog 1 39.0 35 0.0012 20.6 3.2 17 5-21 23-39 (72)
490 1gmj_A ATPase inhibitor; coile 38.1 71 0.0024 19.9 4.5 20 12-31 53-72 (84)
491 3cvf_A Homer-3, homer protein 37.9 36 0.0012 21.0 3.2 19 5-23 29-47 (79)
492 4etp_A Kinesin-like protein KA 37.8 17 0.00057 31.0 2.4 37 1-37 8-44 (403)
493 2d8d_A Aroag, phospho-2-dehydr 37.4 64 0.0022 20.3 4.6 30 1-30 1-30 (90)
494 4gkw_A Spindle assembly abnorm 36.9 31 0.001 23.3 2.9 28 3-30 46-73 (167)
495 2js5_A Uncharacterized protein 36.9 68 0.0023 19.2 4.9 31 1-31 1-31 (71)
496 3ol2_B Plexin-B1; beta-propell 36.7 45 0.0015 29.6 4.9 67 300-369 389-461 (528)
497 3ol2_B Plexin-B1; beta-propell 36.7 1.2E+02 0.0042 26.9 7.6 67 253-323 389-461 (528)
498 3u06_A Protein claret segregat 36.6 22 0.00074 30.5 2.8 35 1-35 8-42 (412)
499 2eqb_B RAB guanine nucleotide 36.2 85 0.0029 20.2 4.8 33 1-33 3-35 (97)
500 1l8d_A DNA double-strand break 36.1 55 0.0019 21.7 4.3 33 1-33 1-33 (112)
No 1
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.9e-63 Score=429.02 Aligned_cols=373 Identities=77% Similarity=1.314 Sum_probs=334.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEE
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIV 83 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~ 83 (389)
+++|+++++..++.+++++++++++.++.+.+.+...+.......+..|.|.++.+.++|.+|.++|++++|+|++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~ 82 (380)
T 3iz6_a 3 SVAELKEKHAAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV 82 (380)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCCSCHHHHGGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHhhhcccccccccccceeEEeecccccccEEEEEEEcCCCCEEE
Confidence 45678888888888899999999988888877777777777777788899999999999999999999999999999999
Q ss_pred EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (389)
Q Consensus 84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (389)
+|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.|++|++..........+....+.+|.+.|.+
T Consensus 83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~ 162 (380)
T 3iz6_a 83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS 162 (380)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999998765555556667788999999999
Q ss_pred EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce
Q 016458 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (389)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 243 (389)
+.|.|+++..|++|+.|++|++||+.++..+..+......+|...|.++++++.++++|++|+.|+.|++||++.....+
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 99999876789999999999999999999988876555568899999999998788999999999999999998665788
Q ss_pred eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (389)
..+.+|...|.+++|+|++++|++++.||.|++||++++..+..+..... ......+++++|+|+|++|++|+.||.|
T Consensus 243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 89999999999999999999999999999999999999988877654332 1223358999999999999999999999
Q ss_pred EEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
++||+..++....+.....+|.+.|++++|+|+|.+|++|+.||.|++ |++..++
T Consensus 323 ~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i----W~~~~~~ 377 (380)
T 3iz6_a 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI----WAFSGHR 377 (380)
T ss_dssp EEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE----EECCSSS
T ss_pred EEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE----EecCCCc
Confidence 999999998888776555789999999999999999999999999999 9998764
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.8e-57 Score=387.52 Aligned_cols=338 Identities=47% Similarity=0.943 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCc
Q 016458 11 RHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGR 90 (389)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~ 90 (389)
+..++++|+++|++++++.++++.............. ......+..++|.+|.++|++++|+|++++|++|+.||+
T Consensus 3 e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~ 78 (340)
T 1got_B 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDP----VGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCC----CCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCc----cccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 4445666666666666666665554333222211111 122356778899999999999999999999999999999
Q ss_pred EEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC
Q 016458 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170 (389)
Q Consensus 91 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (389)
|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.... ........+.+|.+.|.++.|++++
T Consensus 79 v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (340)
T 1got_B 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN 155 (340)
T ss_dssp EEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999998743 2233566788999999999999975
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
.+++++.|+.|++||+.++.....+ ..|...|.+++|+| ++.++++|+.|+.|++||+++. .....+.+|.
T Consensus 156 --~l~s~s~d~~i~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~ 226 (340)
T 1got_B 156 --QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG-MCRQTFTGHE 226 (340)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-SEEEEECCCS
T ss_pred --cEEEEECCCcEEEEECCCCcEEEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCc
Confidence 5999999999999999999999888 78999999999999 8889999999999999999987 7788899999
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
..|.+++|+|++++|++++.||.|++||+++++.+..+.. ......|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 9999999999999999999999999999998877766543 2223359999999999999999999999999999999
Q ss_pred EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
....+ .+|.+.|.+++|+|+|.+|++|+.||.|+| ||
T Consensus 304 ~~~~~----~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i----Wd 340 (340)
T 1got_B 304 RAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKI----WN 340 (340)
T ss_dssp EEEEE----ECCSSCEEEEEECTTSSCEEEEETTSCEEE----EC
T ss_pred EeeEe----ecCCCcEEEEEEcCCCCEEEEEcCCccEEe----cC
Confidence 98888 789999999999999999999999999999 96
No 3
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.3e-56 Score=381.84 Aligned_cols=345 Identities=41% Similarity=0.833 Sum_probs=301.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec
Q 016458 8 LKERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ 87 (389)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~ 87 (389)
.++++..++.|.+.|+.++++.+....+..+.......... ........++|.+|.++|++++|+|++++|++|+.
T Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~ 84 (354)
T 2pbi_B 9 ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEAL----GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ 84 (354)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTTTSCCC----CCCCCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhccCCccc----cccccEEEEEecCCCCeEEEEEECCCCCEEEEEeC
Confidence 45677888899999999998888777776655544333222 23445778899999999999999999999999999
Q ss_pred CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (389)
||+|++||..+++....+..|...|.+++|+|++.++++|+.|+.+++|++...... ........+..|...|.++.|+
T Consensus 85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-CSGGGCEEEEECSSCEEEEEEC
T ss_pred CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-cccccceeeeccCCcEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999764321 1223456677899999999999
Q ss_pred eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEE
Q 016458 168 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (389)
Q Consensus 168 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 246 (389)
|++ ..+++++.|++|++||+++++.+..+ .+|...|.+++++|. ++++|++|+.||.|++||++++ ..+..+
T Consensus 164 ~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~ 236 (354)
T 2pbi_B 164 NSD-MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF 236 (354)
T ss_dssp SSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence 997 68999999999999999999999888 789999999999884 4589999999999999999987 788889
Q ss_pred eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
.+|...|.+++|+|++.+|++++.|+.|++||++.+.....+... .....+.+++|+|+|++|++|+.|+.|++||+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---SIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---TCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---CcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 999999999999999999999999999999999988766555432 22335899999999999999999999999999
Q ss_pred ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
.+++.+..+ .+|.+.|++++|+|+|++|++|+.||.|+| |+
T Consensus 314 ~~~~~~~~l----~~h~~~v~~l~~spdg~~l~sgs~D~~v~v----W~ 354 (354)
T 2pbi_B 314 LKGSRVSIL----FGHENRVSTLRVSPDGTAFCSGSWDHTLRV----WA 354 (354)
T ss_dssp TTCSEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSEEEE----EC
T ss_pred CCCceEEEE----ECCCCcEEEEEECCCCCEEEEEcCCCCEEe----cC
Confidence 999988888 799999999999999999999999999999 96
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.6e-56 Score=387.28 Aligned_cols=300 Identities=25% Similarity=0.411 Sum_probs=273.3
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
+..|.|.. .....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+
T Consensus 91 ~~~~~~~~-~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 91 PKEWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169 (410)
T ss_dssp -CCCCCCS-SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccCC-CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence 44455433 33557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
.|+.|++||+.+.. ....+.+|...|.+++|+|++ .++++|+.|+.|++||+.++..+..+ .+|...
T Consensus 170 ~D~~i~iwd~~~~~-------~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~-----~~h~~~ 236 (410)
T 1vyh_C 170 ADMTIKLWDFQGFE-------CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREW 236 (410)
T ss_dssp TTSCCCEEETTSSC-------EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSC
T ss_pred CCCeEEEEeCCCCc-------eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----eCCCcc
Confidence 99999999998644 667788999999999999997 78999999999999999999998888 689999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecC--------------------CCEEEEE
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--------------------GNRFGTG 268 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~ 268 (389)
|.++.++| ++.++++|+.|+.|++||+++. .....+.+|...|.+++|+|+ +.+|++|
T Consensus 237 v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 99999999 8899999999999999999987 778888999999999999996 6789999
Q ss_pred ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 269 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
+.||.|++||++++..+..+..+. ..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|...|++
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~----~~h~~~v~~ 385 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHD-----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTS 385 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCS-----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEE
T ss_pred eCCCeEEEEECCCCceEEEEECCC-----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----cCCCCcEEE
Confidence 999999999999998888776543 35999999999999999999999999999999988888 789999999
Q ss_pred EEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 349 LGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
++|+|++.+|++|+.||.|++ |++.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~v----W~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKV----WECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEE----EC--
T ss_pred EEEcCCCCEEEEEeCCCcEEE----EeCC
Confidence 999999999999999999999 9863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-52 Score=353.31 Aligned_cols=293 Identities=18% Similarity=0.305 Sum_probs=265.1
Q ss_pred ceeeeecccccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCe--eEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
....+.+++|.++|++++|+|+ +.+|++|+.|++|++|++.+++. ...+.+|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 4556788999999999999985 56899999999999999987654 34578899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
+.|++||+.++. ....+..|...+.+++|+|++ .+|++++.||.|++||+.++.....+ ..+...+.
T Consensus 102 ~~i~lWd~~~~~-------~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~~v~ 168 (321)
T 3ow8_A 102 AHIRLWDLENGK-------QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSL-----DTRGKFIL 168 (321)
T ss_dssp SEEEEEETTTTE-------EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEE-----ECSSSCEE
T ss_pred CcEEEEECCCCC-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEe-----cCCCceEE
Confidence 999999998754 566777888899999999998 78999999999999999999888877 67888999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+++|+| ++++|++++.||.|++||++++ +.+..+.+|..+|.+++|+|++++|++++.||.|++||++++.....+..
T Consensus 169 ~~~~sp-dg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 169 SIAYSP-DGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 999999 8899999999999999999987 78888999999999999999999999999999999999999888777654
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEe
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVN 370 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 370 (389)
+. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++
T Consensus 247 h~-----~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v- 316 (321)
T 3ow8_A 247 HA-----SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHI- 316 (321)
T ss_dssp CS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTCCEEE-
T ss_pred CC-----CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECCCCCEEEEEeCCCeEEE-
Confidence 33 35999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred ecceecc
Q 016458 371 LGFWRVQ 377 (389)
Q Consensus 371 ~~~W~~~ 377 (389)
||..
T Consensus 317 ---wd~p 320 (321)
T 3ow8_A 317 ---YDCP 320 (321)
T ss_dssp ---EECC
T ss_pred ---EeCC
Confidence 9964
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.3e-52 Score=348.05 Aligned_cols=295 Identities=22% Similarity=0.350 Sum_probs=261.1
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
+...++|.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
|+.++. ....+.+|...|.+++|+|++ .+|++|+.|+.|++||++++ .....+ .+|...|.+++|+
T Consensus 83 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~-----~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN 149 (304)
T ss_dssp ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEE-----CCCCSCEEEEEEC
T ss_pred ECCCCc-------EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhh-----cccCCcEEEEEEC
Confidence 998755 677888999999999999997 78999999999999999887 444555 6899999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
|.++.+|++|+.|+.|++||++...........|...+..++|+| ++.+|++++.|+.|++||+++++.+..+..+..
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 977889999999999999999877444444456778899999987 778999999999999999999988888765443
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC--eEEeeeCCCeeEEee
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKVNL 371 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~~ 371 (389)
.|.+++|+|++++|++|+.||.|++||+.+++....+ ..|...+.+++|+|++. ++++|+.|| +.+
T Consensus 230 -----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~-- 297 (304)
T 2ynn_A 230 -----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNG-FTV-- 297 (304)
T ss_dssp -----CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEEECTTCGGGCEEEEETTE-EEE--
T ss_pred -----CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEEECCCCCceEEEEecCCc-eEE--
Confidence 4999999999999999999999999999999999998 78889999999999875 467766555 555
Q ss_pred cceeccc
Q 016458 372 GFWRVQE 378 (389)
Q Consensus 372 ~~W~~~~ 378 (389)
|++.+
T Consensus 298 --~~~~~ 302 (304)
T 2ynn_A 298 --LSLGN 302 (304)
T ss_dssp --EECC-
T ss_pred --EEecc
Confidence 77654
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-50 Score=343.06 Aligned_cols=300 Identities=25% Similarity=0.359 Sum_probs=261.3
Q ss_pred CCcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCC-----CCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458 54 PTDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-----SQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 54 ~~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (389)
+..+.+..+|.+|.++|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34567888999999999999999965 7999999999999999864 23466788999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
+.|+.|++||+.++. ....+.+|...|.+++|+|++ .++++|+.|+.|++||+.. .....+ .+|..
T Consensus 84 s~D~~v~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-~~~~~~-----~~h~~ 149 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-------TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-QCLATL-----LGHND 149 (319)
T ss_dssp ETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-CEEEEE-----CCCSS
T ss_pred eCCCEEEEEECCCCC-------eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeEEEE-----eccCC
Confidence 999999999998755 567888999999999999987 7899999999999999975 455555 68999
Q ss_pred CeeEEEeeCC-----CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 208 DVLSVSISGS-----NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 208 ~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
.|.++.+.|. ++..+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999983 2348999999999999999987 677788899999999999999999999999999999999999
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc----CCCCCCCeeEEEECCCCCeE
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----QNSHEGRITCLGLSADGSAL 358 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l 358 (389)
+.+..+.... .+.+++|+|++.+|++++.+ .+++|++........+... ...|...+.+++|+|||++|
T Consensus 229 ~~~~~~~~~~------~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 229 KAMYTLSAQD------EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp EEEEEEECCS------CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred cEEEEecCCC------cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 8887775432 49999999999999988765 5999999988777665321 12456789999999999999
Q ss_pred EeeeCCCeeEEeecceecccC
Q 016458 359 CTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 359 ~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++|+.||.|+| |++.++
T Consensus 302 ~sg~~Dg~i~v----Wd~~t~ 318 (319)
T 3frx_A 302 FAGYTDNVIRV----WQVMTA 318 (319)
T ss_dssp EEEETTSCEEE----EEEEEC
T ss_pred EEeecCceEEE----EEEeec
Confidence 99999999999 999875
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-50 Score=345.65 Aligned_cols=311 Identities=22% Similarity=0.325 Sum_probs=253.0
Q ss_pred cceeeeecccccC-cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE---EeeCCCcEEEEEECCCCcEEEEecCCC
Q 016458 56 DLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---IKLPCAWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 56 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg 131 (389)
...++.++.+|.+ .|.+++|+|++++||+|+.|++|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4577889999998 999999999999999999999999999988764322 256889999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTAD 208 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~ 208 (389)
.|++|++.... ......+.+|...|.+++|+|++ ++|++++.|+.|++||+.++.. ...+ ..|...
T Consensus 84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL-----NSHTQD 152 (345)
T ss_dssp CEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE-----CCCCSC
T ss_pred cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe-----cCcCCC
Confidence 99999987632 23567788999999999999997 7999999999999999987643 3444 688999
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeE
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 287 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 287 (389)
|.+++|+| ++.+|++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+.|++||.........
T Consensus 153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 99999999 88899999999999999988652 24567889999999999999999999999999999999643221100
Q ss_pred -----------eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE----EEee-cCcCCCCCCCeeEEEE
Q 016458 288 -----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV----VLNL-GSLQNSHEGRITCLGL 351 (389)
Q Consensus 288 -----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~~~~~~~~v~~~~~ 351 (389)
........+...|.+++|+|++..|++++.|+.|++|+...... ...+ .....+|...|++++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 00001112344699999999999999999999999999865421 1100 0111589999999999
Q ss_pred CCCC-CeEEeeeCCCeeEEeecceecccCccc
Q 016458 352 SADG-SALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 352 ~~~~-~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+|++ .+|++|+.||.|++ |++.+++..
T Consensus 312 ~p~~~~~laS~s~Dg~v~~----W~~~~~~~~ 339 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGEVAF----WKYQRPEGL 339 (345)
T ss_dssp CSSSTTEEEEEETTSCEEE----EEECC----
T ss_pred eCCCceEEEEcCCCCcEEE----EEecCCCCc
Confidence 9987 49999999999999 999987643
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-49 Score=334.94 Aligned_cols=297 Identities=23% Similarity=0.426 Sum_probs=264.6
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
......++.+|.++|++++|+|++++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
||+.++. ....+.+|...|.++.|+|++ .++++++.|+.|++||+++++....+ ..|...|.+++|+
T Consensus 92 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~ 158 (312)
T 4ery_A 92 WDVSSGK-------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTL-----PAHSDPVSAVHFN 158 (312)
T ss_dssp EETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEC
T ss_pred EECCCCc-------EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcEEEEEEc
Confidence 9998754 667788999999999999997 78999999999999999999988888 6888999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (389)
| ++.+|++++.||.|++||+++. +.+..+ ..+..++..++|+|++++|++++.||.|++||+++++.+..+..+...
T Consensus 159 ~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 159 R-DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred C-CCCEEEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence 9 8889999999999999999987 444444 446678999999999999999999999999999999887777554322
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee--CCCeeEEeec
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS--WDTNLKVNLG 372 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~~~ 372 (389)
...+......+++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++ .|+.|++
T Consensus 237 --~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~--- 307 (312)
T 4ery_A 237 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKL--- 307 (312)
T ss_dssp --SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEE---
T ss_pred --eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecCcCCceEEEEccCCccEEE---
Confidence 112333334467889999999999999999999999988 79999999999999999999987 6999999
Q ss_pred ceecc
Q 016458 373 FWRVQ 377 (389)
Q Consensus 373 ~W~~~ 377 (389)
|+.+
T Consensus 308 -W~~d 311 (312)
T 4ery_A 308 -WKSD 311 (312)
T ss_dssp -EECC
T ss_pred -ecCC
Confidence 9864
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-50 Score=342.03 Aligned_cols=297 Identities=19% Similarity=0.210 Sum_probs=238.3
Q ss_pred ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC-----------CCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-----------TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
..|...|.+++|+|||++|++++ |+++++||.. ..........+...|.+++|+|++ .|++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999998887 6778888631 111122223355679999999985 6789999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|+|||+.+++. .........+|.+.|.+++|+|++ ++|++|+.|+.|++||+.+++.+..+ .+|...|.++
T Consensus 105 v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~~ 175 (344)
T 4gqb_B 105 VELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCV 175 (344)
T ss_dssp EEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred EEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCcCCceEEE
Confidence 99999987541 112233456899999999999998 78999999999999999999999998 7899999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE--eeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
+|+|.+..+|++++.|+.|++||+++. +....+ ..|...+.+++|+| ++++|++|+.||.|++||+++++.+..+.
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred EecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence 999966679999999999999999987 555554 34556799999999 56788999999999999999999888876
Q ss_pred ccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeeeCCCee
Q 016458 290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNL 367 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 367 (389)
.+.. .|++++|+|++ ++|++|+.|+.|+|||+.+++... + .+|.+.|++++|+|+++ +|++++.||+|
T Consensus 255 ~h~~-----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 255 VHSQ-----CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCC-----CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 5443 59999999998 589999999999999999887654 4 68999999999999986 56789999999
Q ss_pred EEeecceecccCcccCccc
Q 016458 368 KVNLGFWRVQEGALSPWGV 386 (389)
Q Consensus 368 ~i~~~~W~~~~~~~~~~~~ 386 (389)
++ |++.+..+..-++
T Consensus 325 ~~----w~v~~~~~~~p~p 339 (344)
T 4gqb_B 325 VH----HVVPTEPLPAPGP 339 (344)
T ss_dssp EE----EECCC--------
T ss_pred EE----EECCCCCCCCCCC
Confidence 99 9999876654333
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-49 Score=339.15 Aligned_cols=301 Identities=20% Similarity=0.312 Sum_probs=250.1
Q ss_pred cceeeeecccccCcEEEEEE-----cC-CCCeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcEEEEEECCCCc
Q 016458 56 DLVCCRTLQGHAGKVYSLDW-----TS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
...+...|.+|.+.|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45677899999999999999 76 8999999999999999998754 34567788999999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 202 (389)
++++|+.|+.|++||+.++. ....+.+|...|.+++|+|++ .+|++++.|+.|++||+...... ... ..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~ 158 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-SSA--EK 158 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-------EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-ECC--TT
T ss_pred EEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-eee--cc
Confidence 99999999999999998754 567788999999999999997 78999999999999999854332 221 11
Q ss_pred CCCCCCeeEEEeeCCC---------CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCe
Q 016458 203 SGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
..|...|.+++|+|.. ..+|++++.||.|++||.+ ......+.+|...|.+++|+|++++|++|+.||.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 3688899999999843 2689999999999999954 3566788899999999999999999999999999
Q ss_pred EEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE--eecC-------cCCCCC
Q 016458 274 CRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-------LQNSHE 343 (389)
Q Consensus 274 i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-------~~~~~~ 343 (389)
|++||+.... ....+.. . ..|.+++|+|++.+++++ .|+.|++||+.+++... .+.. ...+|.
T Consensus 237 v~iwd~~~~~~~~~~~~~-~-----~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDA-G-----STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp EEEEESSCCSSCSEEEEC-S-----SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred EEEEECCCCcccceeecC-C-----CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 9999995443 3333322 1 249999999999988765 57789999998765433 3311 012688
Q ss_pred CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 344 GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 344 ~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
..|.+++|+|+|++|++|+.||.|++ |++++|+
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~----w~~~~g~ 342 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRT----FSFETSA 342 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEE----EEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEE----EEEEccC
Confidence 89999999999999999999999999 9998764
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-49 Score=335.69 Aligned_cols=303 Identities=21% Similarity=0.325 Sum_probs=239.4
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEE-ee-CCCcEEEEEECCCCcEEEEecCCC
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAI-KL-PCAWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg 131 (389)
.+.+.++|.+|.++|.+++|+|+ +|++|+.|++|++||+.++. ....+ .. |...|.+++|+|++++|++|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 34677899999999999999998 99999999999999998753 34444 33 888999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHTA 207 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~ 207 (389)
.|++|++...............+.+|...|.+++|+|++ .+|++|+.|+.|++||+... +....+ ..|..
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~h~~ 154 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QEHSQ 154 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CCCSS
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----ccCCC
Confidence 999999965322112234566788999999999999997 79999999999999999532 445555 68999
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCc-
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH- 283 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~- 283 (389)
.|.+++|+| ++.+|++++.|+.|++||.+... .++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.+.
T Consensus 155 ~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 155 DVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred ceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 999999999 88899999999999999987542 467788899999999999998 7789999999999999987542
Q ss_pred -------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce--EEEeecCcCCCCCC-CeeEEEECC
Q 016458 284 -------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEG-RITCLGLSA 353 (389)
Q Consensus 284 -------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~-~v~~~~~~~ 353 (389)
....+. ..+...|.+++|++++ +|++++.||.|++||..+++ ...... ..|.. .|.+++|+|
T Consensus 234 ~~~~~~~~~~~~~----~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 234 DDQQEWVCEAILP----DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA---LCHGVYEINVVKWLE 305 (330)
T ss_dssp TSCEEEEEEEECC----SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES---CTTTTSCEEEEEEC-
T ss_pred cccceeEEeeecc----cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc---cccccceEEEEEEec
Confidence 112111 1244569999999765 88999999999999998774 232221 56776 899999999
Q ss_pred --CCCeEEeeeCCCeeEEeecceecccC
Q 016458 354 --DGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 354 --~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++++|++|+.||.|++ |++++.
T Consensus 306 ~~~~~~las~s~Dg~v~~----W~~~~~ 329 (330)
T 2hes_X 306 LNGKTILATGGDDGIVNF----WSLEKA 329 (330)
T ss_dssp ----CCEEEEETTSEEEE----EEC---
T ss_pred CCCceEEEEecCCCcEEE----EEeccC
Confidence 7899999999999999 998754
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-49 Score=341.34 Aligned_cols=292 Identities=18% Similarity=0.269 Sum_probs=240.6
Q ss_pred cccccCcEEEEEEcCCCCeEEEEec------CCcEEEEeCCCCCe----eEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQ------DGRLIVWNALTSQK----THAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
..+|.+.|++++|+|||++||+|+. |+.|++|+..++.. ......|...|.+++|+|++.++ +++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCE
Confidence 3579999999999999999999997 78899999877654 33445678889999999998655 5678999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|++||+.+++. .........+|...|.+++|+|++ ++|++|+.|+.|++||+.+++....+ ..|...|.++
T Consensus 117 v~lWd~~~~~~---~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~v 187 (357)
T 4g56_B 117 VELWEILEKES---LLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCV 187 (357)
T ss_dssp EEEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEE
T ss_pred EEEeeccccce---eEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----cCCCCCEEEE
Confidence 99999987542 112233456899999999999997 78999999999999999999999988 7899999999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE--EeeeccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
+|+|.+..++++++.||.|++||++++ ++... ...|...+.+++|+|+ +.+|++|+.|+.|++||+++++....+.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred EEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 999966678999999999999999987 44333 3456778999999996 5688999999999999999998888775
Q ss_pred ccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeCCCee
Q 016458 290 QQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNL 367 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 367 (389)
.+.. .|++++|+|++ ++|++|+.||.|+|||+.+++.+..+ +|.+.|++++|+| ++.+|++++.||.|
T Consensus 267 ~~~~-----~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 267 VHSQ-----NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp CCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred ccce-----eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 5443 59999999987 58999999999999999999887654 7999999999998 89999999999999
Q ss_pred EEeecceecccC
Q 016458 368 KVNLGFWRVQEG 379 (389)
Q Consensus 368 ~i~~~~W~~~~~ 379 (389)
++ |++.+.
T Consensus 337 ~i----W~~~~~ 344 (357)
T 4g56_B 337 LH----HHLPSE 344 (357)
T ss_dssp EE----EECC--
T ss_pred EE----EECCCC
Confidence 99 999753
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.7e-48 Score=330.15 Aligned_cols=305 Identities=26% Similarity=0.408 Sum_probs=258.7
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCC-----eeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ-----KTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
..+.++.+..+|+||.+.|++|+|+|+ +++|+||+.||+|+|||+.+.+ +...+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp ---CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 345677888899999999999999997 5799999999999999987654 3566778999999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+++.|+.|++|+..... .......+...+..+.+.+++ .++++++.|+.+++||+.......... ..|
T Consensus 103 s~~~d~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~----~~~ 170 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD----ESH 170 (340)
T ss_dssp EEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS----SSC
T ss_pred EEcccccceEEeecccc-------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe----ccc
Confidence 99999999999998744 455666777888899999987 689999999999999998766554432 578
Q ss_pred CCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 206 TADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 206 ~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
...+..+++++.. ..++++++.|+.|++||+++. +....+.+|..+|.+++|+|++++|++++.||.|++||+++.+.
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 8899999998743 457789999999999999987 78888899999999999999999999999999999999999888
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC-----cCCCCCCCeeEEEECCCCCeEE
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
+..+.... .+.+++|+|++.++ +++.|+.|++||+.++..+..+.. ....|...|++++|+|+|++|+
T Consensus 250 ~~~~~~~~------~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 250 LYTLDGGD------IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp EEEEECSS------CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred eeeecCCc------eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 87765432 48999999988665 455789999999998887766542 1246889999999999999999
Q ss_pred eeeCCCeeEEeecceecccCc
Q 016458 360 TGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 360 ~~~~dg~i~i~~~~W~~~~~~ 380 (389)
+|+.||.|+| |++.+|+
T Consensus 323 sgs~Dg~v~i----W~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRV----WQVTIGT 339 (340)
T ss_dssp EEETTSCEEE----EEEEC--
T ss_pred EEeCCCEEEE----EeCCCcC
Confidence 9999999999 9999986
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-48 Score=339.74 Aligned_cols=287 Identities=22% Similarity=0.444 Sum_probs=248.3
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC------------------CcEEEEEECCCCcEEEE
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------------AWVMTCAFSPTGQSVAC 126 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~ 126 (389)
+|.+.|++++|+|+|++||+|+ ++++++|++.+++.+..+..+. ..|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 6799999999999887776543 24899999999999999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 206 (389)
|+.|+.|++||+.++. ....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+ .+.
T Consensus 141 ~~~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~ 206 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-------IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL------SIE 206 (393)
T ss_dssp EETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE------ECS
T ss_pred EcCCCeEEEEECCCCc-------EEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE------EcC
Confidence 9999999999998754 567788999999999999997 68999999999999999999887776 356
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-------eeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (389)
..+.+++++|.++.+|++|+.||.|++||+++. ..+..+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 679999999978899999999999999999876 555554 578899999999999999999999999999999
Q ss_pred CCCce------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 280 RTGHQ------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 280 ~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
++... ...+. .+...|.+++|+|++.+|++|+.||.|++||+.+++.+..+ .+|...|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l----~~h~~~v~ 356 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYI-----GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVI 356 (393)
T ss_dssp ---------------CEEEEEE-----CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEE
T ss_pred CCCCCcccccCCCCCcceEEEe-----cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----CCCCCCEE
Confidence 86432 22222 23346999999999999999999999999999999999888 78999999
Q ss_pred EEEECC------CCCeEEeeeCCCeeEEeecceecccCc
Q 016458 348 CLGLSA------DGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 348 ~~~~~~------~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
+++|++ ++.+|++|+.||.|+| |++...+
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~i----W~~~~~~ 391 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARI----WKYKKIA 391 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEE----EEEEEC-
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEE----CcccccC
Confidence 999886 6889999999999999 9987643
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-47 Score=353.03 Aligned_cols=307 Identities=18% Similarity=0.247 Sum_probs=266.7
Q ss_pred CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
....|+..+......|.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+..|.++|.+++|+|++++|+
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~ 119 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA 119 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEE
Confidence 44567777777888999999999999999999999999999999999987544 4456788999999999999999999
Q ss_pred EecCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 126 CGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 126 ~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
+++.+ +.|++||... ....+.+|...|.+++|+|+++..|++++.|++|++||..+++....+
T Consensus 120 ~~~~~~~~~~~v~~wd~~~---------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l---- 186 (611)
T 1nr0_A 120 AVGEGRERFGHVFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---- 186 (611)
T ss_dssp EEECCSSCSEEEEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE----
T ss_pred EEECCCCceeEEEEeeCCC---------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee----
Confidence 98765 4788887543 345678999999999999998667999999999999999998888888
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-------eeccceEEEEEecCCCEEEEEecCCeE
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (389)
.+|...|.+++|+| ++++|++++.|+.|++||+.++ .....+. +|...|.+++|+|++++|++++.|++|
T Consensus 187 -~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 187 -GEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp -CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -ccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 78999999999999 8899999999999999999877 5565663 799999999999999999999999999
Q ss_pred EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
++||+.+++....+..... .......+.| +++.+++++.||.+++||...++....+ .+|...|++++|+|+
T Consensus 264 ~lWd~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTR--IEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVR----YGHNKAITALSSSAD 335 (611)
T ss_dssp EEEETTTTEEEEEEECCSS--GGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEE----CCCSSCEEEEEECTT
T ss_pred EEEeCCCCceeeeecCCCC--ccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEE----cCCCCCEEEEEEeCC
Confidence 9999999988877654321 1223556666 6789999999999999999998887777 799999999999999
Q ss_pred CCeEEeeeCCCeeEEeecceecccCccc
Q 016458 355 GSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 355 ~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
|++|++++.|+.|++ ||+.+++..
T Consensus 336 g~~l~s~s~D~~v~~----Wd~~~~~~~ 359 (611)
T 1nr0_A 336 GKTLFSADAEGHINS----WDISTGISN 359 (611)
T ss_dssp SSEEEEEETTSCEEE----EETTTCCEE
T ss_pred CCEEEEEeCCCcEEE----EECCCCcee
Confidence 999999999999999 999987653
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-48 Score=355.30 Aligned_cols=321 Identities=18% Similarity=0.273 Sum_probs=261.0
Q ss_pred cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe-------eCCCcEEE
Q 016458 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-------LPCAWVMT 114 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------~~~~~v~~ 114 (389)
..+.+.....|+....++..++.+|.+.|.+++|+|++++|++|+.|++|++||..+++....+. .|.+.|.+
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE
Confidence 34455667788888888899999999999999999999999999999999999999999888874 68899999
Q ss_pred EEECCCCcEEEEecCCCcEEEEeCCCCCCCCC------------------------------------CCcceeeecccc
Q 016458 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG------------------------------------NLPVSRMLSGHK 158 (389)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~------------------------------------~~~~~~~~~~~~ 158 (389)
++|+|++++|++++.|++|++||+.++..... .......+.+|.
T Consensus 245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~ 324 (611)
T 1nr0_A 245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence 99999999999999999999999986431100 001234556899
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-------------------------------------
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF------------------------------------- 201 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------- 201 (389)
..|.+++|+|++ .+|++++.|+.|++||+.++.....+....
T Consensus 325 ~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 325 KAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence 999999999998 789999999999999998765433220000
Q ss_pred ----------------------------------------cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc
Q 016458 202 ----------------------------------------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (389)
Q Consensus 202 ----------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 241 (389)
...+...+.+++|+| ++++|++|+.|+.|++||+.....
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence 001234577899999 889999999999999999976521
Q ss_pred -ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 242 -AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 242 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
.... .+|...|.+++|+|++++|++++.|+.|++||+.+ ++...... ...|...|.+++|+|+|++|++|+.|+
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEECCC
Confidence 1233 67999999999999999999999999999999987 44332201 112445699999999999999999999
Q ss_pred cEEEEEcccce-EE-EeecCcCCCC-CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 320 DCYVWDTLLAK-VV-LNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 320 ~i~i~d~~~~~-~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
.|++||+.++. .. ..+ .+| ...|.+++|+|+++ |++++.|++|++ |++.
T Consensus 559 ~v~lW~~~~~~~~~~~~~----~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~l----W~~~ 610 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIK----GAHAMSSVNSVIWLNETT-IVSAGQDSNIKF----WNVP 610 (611)
T ss_dssp CEEEEETTCTTSCCEEET----TSSTTSCEEEEEEEETTE-EEEEETTSCEEE----EECC
T ss_pred cEEEEECCCcccccchhh----ccCcccCeeEEEEcCCCE-EEEecCCCCEEE----Eecc
Confidence 99999998765 22 344 688 89999999999998 999999999999 9973
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-46 Score=325.14 Aligned_cols=302 Identities=14% Similarity=0.225 Sum_probs=265.5
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
.......|.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecC------cccCC
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGG------EFQSG 204 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~------~~~~~ 204 (389)
||+.++. ....+. +...+.+++|+|++ .++++++.+ |.|++||+........+.. .....
T Consensus 101 wd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 101 WDVSNGQ-------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp EETTTCC-------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred EECCCCc-------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 9998754 444444 88899999999997 689999888 9999999876532111100 00023
Q ss_pred CCC--CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 205 HTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 205 ~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
+.. .+.+++|+| ++++|++++.||.|++||+++....+..+..|...|.+++|+|++++|++++.||.|++||++++
T Consensus 172 ~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 172 HEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 444 899999999 88899999999999999999855788889999999999999999999999999999999999999
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--------------cEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
+....+... ..+..++|+|+++++++++.++ .+++||+.+++.+..+ .+|...|++
T Consensus 251 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~ 320 (369)
T 3zwl_B 251 QVLKKYETD------CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNT 320 (369)
T ss_dssp CEEEEEECS------SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEE
T ss_pred ceeeeecCC------CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEE
Confidence 888877632 2489999999999999999988 8999999999999988 789999999
Q ss_pred EEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 349 LGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
++|+|++++|++++.||.|++ |+++++.+
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~i----w~~~~~~~ 349 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRL----HHFEKSYF 349 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEE----EEECHHHH
T ss_pred EEECCCCCEEEEEcCCCeEEE----EECccccc
Confidence 999999999999999999999 99998754
No 19
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-46 Score=348.32 Aligned_cols=299 Identities=26% Similarity=0.385 Sum_probs=253.0
Q ss_pred ceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-----CeeEEEeeCCCcEEEEEECCCCcEEEEecCC
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTS-----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 130 (389)
+.....+++|.+.|++++|+|++ ++|++|+.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 35566899999999999999865 69999999999999998764 3456788999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
|.|++||+.++. ....+.+|...|.+++|+|++ .+|++++.|++|++||........... ....|...|.
T Consensus 452 g~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~ 521 (694)
T 3dm0_A 452 GELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVS 521 (694)
T ss_dssp SEEEEEETTTTE-------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEE
T ss_pred CcEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEE
Confidence 999999998754 567788999999999999997 789999999999999987654443321 1146888999
Q ss_pred EEEeeCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 211 SVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 211 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
+++|+|.. ...+++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 99999943 368999999999999999987 7788899999999999999999999999999999999999988776553
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC---------------CCCCCeeEEEECCC
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------------SHEGRITCLGLSAD 354 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~ 354 (389)
.. ..+.+++|+|++.++++++ ++.|++||+.++..+..+..... .+...+++++|+|+
T Consensus 601 ~~------~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 601 AN------SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp CS------SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred CC------CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 32 2499999999999888775 45699999999988877642110 11124789999999
Q ss_pred CCeEEeeeCCCeeEEeecceecc
Q 016458 355 GSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 355 ~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|++|++|+.||.|+| |++.
T Consensus 674 g~~l~sgs~Dg~i~i----W~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRV----WGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEE----EEC-
T ss_pred CCEEEEEcCCCeEEE----Eecc
Confidence 999999999999999 9985
No 20
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.2e-47 Score=331.16 Aligned_cols=312 Identities=18% Similarity=0.251 Sum_probs=259.8
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC------eeEEEeeCCCcEEEEEECCC----C---cE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPT----G---QS 123 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 123 (389)
....+.+.+|.++|++++|+| ++|++|+.||.|++||+.+++ ....+..|...|.+++|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 466778999999999999999 699999999999999999988 78888999999999999999 9 99
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc-----ccceEEEEEe----eCCCcE-EEEeeCCCeEEEEeCCC---
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LITSSGDQTCVLWDITT--- 190 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~--- 190 (389)
|++++.||.|++|++..+... .......+..| ...|.+++|+ |++ .+ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccc
Confidence 999999999999999875410 11115667777 5899999999 987 67 99999999999999988
Q ss_pred ---CeeEE-----EecC--cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee---e---ccceE
Q 016458 191 ---GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---H---EGDVN 254 (389)
Q Consensus 191 ---~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~i~ 254 (389)
+..+. .+.. .....|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+.. | ...|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCccc
Confidence 54443 3310 00134788899999999 66 9999999999999999987 78888888 8 99999
Q ss_pred EEEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCC--------CCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 255 TVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGE--------NEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 255 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
+++|+|++++|++++.| |.|++||+++++.+..+...... .+...|.+++|+|++++|++++.||.|++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999 99999999999888877551000 03346999999999999999999999999
Q ss_pred EEcccceEEEeecCcC--CCC---------------CCCeeEEEECCCC----------CeEEeeeCCCeeEEeecceec
Q 016458 324 WDTLLAKVVLNLGSLQ--NSH---------------EGRITCLGLSADG----------SALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 324 ~d~~~~~~~~~~~~~~--~~~---------------~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~~~~W~~ 376 (389)
||+.+++.+..+.... ..| ...|++++|+|++ ++|++++.||.|++ |++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i----w~~ 393 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW----FRE 393 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE----EEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE----EEc
Confidence 9999999998883100 056 8999999999998 79999999999999 999
Q ss_pred ccCc
Q 016458 377 QEGA 380 (389)
Q Consensus 377 ~~~~ 380 (389)
.+|+
T Consensus 394 ~~g~ 397 (397)
T 1sq9_A 394 AGGK 397 (397)
T ss_dssp EC--
T ss_pred CCCC
Confidence 9874
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-46 Score=340.42 Aligned_cols=295 Identities=27% Similarity=0.496 Sum_probs=260.5
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
+.....|+. +.+....+.+|.+.|.+++|+|++++|++++.|++|++||.. +..+..+..|...+.+++|+|++++|+
T Consensus 283 d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 283 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 344455654 346677889999999999999999999999999999999965 556677888999999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+++.||.|++|+... .....+.+|...|.+++|+|++ ++|++++.|+.|++||. +++....+ ..|
T Consensus 361 ~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~-----~~~ 425 (577)
T 2ymu_A 361 SASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----TGH 425 (577)
T ss_dssp EEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEE-----ECC
T ss_pred EEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEe-----cCC
Confidence 999999999999643 2567788899999999999998 78999999999999996 45666666 689
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (389)
...|.+++|+| ++.+|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+
T Consensus 426 ~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 426 SSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 501 (577)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred CCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence 99999999999 88899999999999999975 3677888999999999999999999999999999999995 56777
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
..+..+. ..|++++|+|+|++|++++.||.|++||. +++.+..+ .+|.+.|++++|+|||++|++++.|+
T Consensus 502 ~~~~~h~-----~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 502 QTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp EEEECCS-----SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEeCCC-----CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 7765543 35999999999999999999999999996 67788888 78999999999999999999999999
Q ss_pred eeEEeeccee
Q 016458 366 NLKVNLGFWR 375 (389)
Q Consensus 366 ~i~i~~~~W~ 375 (389)
.|++ ||
T Consensus 572 ~i~~----Wd 577 (577)
T 2ymu_A 572 TVKL----WN 577 (577)
T ss_dssp CEEE----EC
T ss_pred EEEE----eC
Confidence 9999 97
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-45 Score=311.25 Aligned_cols=294 Identities=20% Similarity=0.348 Sum_probs=261.4
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
..+..+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45788899999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
|++..... ......+..|...|.++.|. + .++++++.||.|++|| .+.....+ ..|...+.++.+.
T Consensus 86 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~-----~~~~~~v~~~~~~ 151 (313)
T 3odt_A 86 VPLFATSG----EDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNL-----QAHNASVWDAKVV 151 (313)
T ss_dssp EETTCCTT----SCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEE-----ECCSSCEEEEEEE
T ss_pred EEeeecCC----CCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEec-----ccCCCceeEEEEc
Confidence 99987431 22456678899999999993 3 6899999999999999 66666666 6789999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 294 (389)
|.+++++++++.||.|++||.. .....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..+..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 226 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES- 226 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS-
T ss_pred cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc-
Confidence 8788999999999999999943 55666766 899999999999988 99999999999999999998888765443
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecce
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFW 374 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W 374 (389)
.|++++|+|++ .|++++.||.|++||+.+++....+ ..|...|.+++|+|+++ +++++.||.|++ |
T Consensus 227 ----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i----w 292 (313)
T 3odt_A 227 ----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCMSNGD-IIVGSSDNLVRI----F 292 (313)
T ss_dssp ----CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEECTTSC-EEEEETTSCEEE----E
T ss_pred ----eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEccCCC-EEEEeCCCcEEE----E
Confidence 59999999999 5889999999999999999999888 78889999999999998 667999999999 9
Q ss_pred ecccCcccC
Q 016458 375 RVQEGALSP 383 (389)
Q Consensus 375 ~~~~~~~~~ 383 (389)
++.++++..
T Consensus 293 ~~~~~~~~~ 301 (313)
T 3odt_A 293 SQEKSRWAS 301 (313)
T ss_dssp ESCGGGCCC
T ss_pred eCCCCceee
Confidence 999987654
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-47 Score=330.33 Aligned_cols=264 Identities=20% Similarity=0.325 Sum_probs=241.2
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
.+.....|+.......+.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l 207 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEE
T ss_pred CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEE
Confidence 34556678888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++|+.|+.|++||+.++. ....+.+|...|.++.++|++ .++++|+.|+.|++||+.++.....+ ..
T Consensus 208 ~s~s~D~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~-----~~ 274 (410)
T 1vyh_C 208 VSASRDKTIKMWEVQTGY-------CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAEL-----RE 274 (410)
T ss_dssp EEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE-----CC
T ss_pred EEEeCCCeEEEEECCCCc-------EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEe-----cC
Confidence 999999999999998754 667888999999999999997 78999999999999999999988888 78
Q ss_pred CCCCeeEEEeeCCC-------------------CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 205 HTADVLSVSISGSN-------------------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 205 ~~~~v~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
|...|.+++|+|.. +.+|++|+.|+.|++||++++ ..+..+.+|...|.+++|+|++++|
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCE
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEE
Confidence 99999999999842 568999999999999999987 7888899999999999999999999
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
++++.||.|++||+.+++.+..+..+.. .|++++|+|++++|++|+.||.|++|+++
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCEEEECCSS-----CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999988888765443 49999999999999999999999999863
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-45 Score=322.56 Aligned_cols=301 Identities=16% Similarity=0.233 Sum_probs=253.4
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeC----CCCC------eeEEEee----------CCC
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNA----LTSQ------KTHAIKL----------PCA 110 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~----~~~~------~~~~~~~----------~~~ 110 (389)
|+............|.++|++++|+|+++ +||+|+.||.|++|++ .+++ ....+.. |..
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 43333344444456679999999999999 9999999999999999 8888 4555554 567
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
.|.+++|+|++++|++++.||.|++|+... .....+..|...|.+++|+|++ .+|++++.||.|++||+.+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVIS 180 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCC
Confidence 899999999999999999999999999332 2567788899999999999997 6899999999999999998
Q ss_pred CeeEEEecCcc---------------------------------------------------cCCCCCCeeEEEeeCCCC
Q 016458 191 GLRTSVFGGEF---------------------------------------------------QSGHTADVLSVSISGSNS 219 (389)
Q Consensus 191 ~~~~~~~~~~~---------------------------------------------------~~~~~~~v~~~~~~~~~~ 219 (389)
+.....+.... ...|...|.+++|+| ++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~ 259 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TN 259 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TT
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CC
Confidence 87665443211 125678899999999 78
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
.+|++++.||.|++||++.. .....+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..+.. .
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~ 332 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-----P 332 (425)
T ss_dssp TEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-----C
T ss_pred CEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-----c
Confidence 89999999999999999987 7788888899999999999999 999999999999999999988877765443 4
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccce--------------------EEEeecCcCCCCCC--CeeEEEECCCCCe
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGSA 357 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 357 (389)
+.+++|+|++++|++++.||.|++||+.+++ .+..+ ..|.. .|++++|+|++++
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSSE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCce
Confidence 9999999999999999999999999999888 77777 67766 9999999999999
Q ss_pred EEeeeCCCeeEEeecceecc
Q 016458 358 LCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 358 l~~~~~dg~i~i~~~~W~~~ 377 (389)
|++++.||.|++ |+++
T Consensus 409 l~~~~~dg~i~i----w~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSV----VAIP 424 (425)
T ss_dssp EEEEESSSCCEE----EECC
T ss_pred EEEEecCceEEE----Eeec
Confidence 999999999999 9985
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-45 Score=320.78 Aligned_cols=302 Identities=17% Similarity=0.256 Sum_probs=248.7
Q ss_pred CcceeeeecccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECC-CCcEEEEecCC
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSP-TGQSVACGGLD 130 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d 130 (389)
......+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.+++|+| ++++|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4567788999999999999999999 899999999999999999988887776 5889999999999 78999999999
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
+.|++||+.... .........|...|.+++|+|++ .+|++++.|+.|++||+ ++.....+ ..|...|.
T Consensus 141 ~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~-----~~h~~~v~ 208 (383)
T 3ei3_B 141 GATTLRDFSGSV-----IQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKE-----KLHKAKVT 208 (383)
T ss_dssp TEEEEEETTSCE-----EEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEE-----ECSSSCEE
T ss_pred CEEEEEECCCCc-----eEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEe-----ccCCCcEE
Confidence 999999998522 11222223445889999999997 78999999999999999 46666666 68999999
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCC---cceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceee
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
+++|+|.+..++++++.|+.|++||+++.. ..+..+ +|...|.+++|+| ++++|++++.|+.|++||++++....
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 999999444499999999999999999732 344444 7999999999999 99999999999999999999888766
Q ss_pred EeeccCCC--CCC----------CCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 287 VYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 287 ~~~~~~~~--~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
.+..+... .+. ..+..++|+|++++ +++.||.|++||+.+++.+..+.. ..|...+.+++|+|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD--PNAAGIISLNKFSPT 363 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB--TTBCSCCCEEEECTT
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC--CCCCceEEEEEEecC
Confidence 66533211 111 23445666777766 677899999999999999888842 235678888899999
Q ss_pred CCeEEeeeCCCeeEEeecceeccc
Q 016458 355 GSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 355 ~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
+++|++|+ ||.|++ |++++
T Consensus 364 g~~l~s~s-d~~i~i----w~~~~ 382 (383)
T 3ei3_B 364 GDVLASGM-GFNILI----WNRED 382 (383)
T ss_dssp SSEEEEEE-TTEEEE----EECC-
T ss_pred ccEEEEec-CCcEEE----EecCC
Confidence 99999997 999999 99875
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-44 Score=309.37 Aligned_cols=293 Identities=18% Similarity=0.342 Sum_probs=252.9
Q ss_pred CcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee---EEEe--eCCCcEEEEEECCCCcEEEEecC
Q 016458 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIK--LPCAWVMTCAFSPTGQSVACGGL 129 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 129 (389)
..........+|.+.|++++|+|++++|++++ ||.|++||+.++... ..+. .|...|.+++|+|++++|++++.
T Consensus 39 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred CCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence 33333444458999999999999999999998 999999999876533 3333 67889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
||.|++|++..+. ......+..|...|.+++|+|++ .++++++.||.|++||+.+++....+ ..|...+
T Consensus 118 d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~-----~~~~~~i 186 (337)
T 1gxr_A 118 ASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGA 186 (337)
T ss_dssp SSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCE
T ss_pred CCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeee-----ecccCce
Confidence 9999999998743 22456677899999999999987 78999999999999999999988888 6789999
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 289 (389)
.+++|+| +++++++++.||.|++||+++. ..+..+ .+...+.+++|+|++++|++++.||.|++||+++++... +.
T Consensus 187 ~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~ 262 (337)
T 1gxr_A 187 SCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH 262 (337)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC
T ss_pred EEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec
Confidence 9999999 8889999999999999999977 555554 478889999999999999999999999999999876543 22
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
. +...+.+++|+|++++|++++.||.|++||+.+++..... .|...|.+++|+|++++|++++.||.|++
T Consensus 263 ~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 263 L-----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp C-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred C-----CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-----cCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 2 3345999999999999999999999999999998887554 57889999999999999999999999999
Q ss_pred eecceecc
Q 016458 370 NLGFWRVQ 377 (389)
Q Consensus 370 ~~~~W~~~ 377 (389)
|++.
T Consensus 333 ----w~~~ 336 (337)
T 1gxr_A 333 ----YEVI 336 (337)
T ss_dssp ----EEEE
T ss_pred ----EEEe
Confidence 9973
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-45 Score=308.44 Aligned_cols=257 Identities=19% Similarity=0.273 Sum_probs=232.1
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (389)
+...++..|...|.+++|+|++++|++++.||.|++||+.++. ....+..|..+|.+++|+|++ ++|++|+.
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~ 75 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARK-NWIIVGSD 75 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence 4566788999999999999999999999999999999998754 567788899999999999997 78999999
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (389)
|+.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++|+.|+.|++||++........+.+|...|.+++|+
T Consensus 76 d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence 999999999999999888 78999999999999 888999999999999999987756667788999999999999
Q ss_pred c-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--CCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458 260 P-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 260 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
| ++.+|++|+.|+.|++||++.......+...+. ..+..+.|+| ++++|++|+.|+.|++||+.+++.+..+
T Consensus 150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~- 224 (304)
T 2ynn_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL- 224 (304)
T ss_dssp TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCT----TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCc----CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-
Confidence 9 678999999999999999988777666544332 2488888876 7789999999999999999999999998
Q ss_pred CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 337 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 337 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+|...|.+++|+|++.+|++|+.||.|++ ||+.++++.
T Consensus 225 ---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i----Wd~~~~~~~ 263 (304)
T 2ynn_A 225 ---EGHMSNVSFAVFHPTLPIIISGSEDGTLKI----WNSSTYKVE 263 (304)
T ss_dssp ---ECCSSCEEEEEECSSSSEEEEEETTSCEEE----EETTTCCEE
T ss_pred ---CCCCCCEEEEEECCCCCEEEEEcCCCeEEE----EECCCCcee
Confidence 799999999999999999999999999999 999988754
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-46 Score=330.80 Aligned_cols=326 Identities=14% Similarity=0.148 Sum_probs=267.7
Q ss_pred cCCCCCcccCCCcce---eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC----CCeeEEEeeCCCcEEEEE
Q 016458 44 SQGRAPVSFGPTDLV---CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~~~~~v~~~~ 116 (389)
..+.....|+..... +...+ .|...|++++|+|++++|++++.||.|++||+.+ .+....+..|...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 344556677776553 33333 6899999999999999999999999999999987 457888889999999999
Q ss_pred ECCC-CcEEEEecCCCcEEEEeCCCCCCCCC--CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458 117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (389)
Q Consensus 117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 193 (389)
|+|+ +++|++++.||.|++||+........ ..........|...|.+++|+|++..++++++.||.|++||+.+++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 89999999999999999987541110 11112334678999999999999668999999999999999999998
Q ss_pred EEEecCcc-cCCCCCCeeEEEeeCCCCcEEEEeeCCC---ceEEEeCCCCCcceeEEe-eeccceEEEEEec-CCCEEEE
Q 016458 194 TSVFGGEF-QSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNRFGT 267 (389)
Q Consensus 194 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~ 267 (389)
...+.... ...|...+.+++|+|.+..++++++.|+ .|++||++....+...+. +|...|.+++|+| ++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 88873210 0112788999999995568999999998 999999998756777787 8999999999999 9999999
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC-CEEEEEecCCcEEEEEcccceEEEeec----------
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG---------- 336 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 336 (389)
++.||.|++||+++++.+..+..+.. .|.+++|+|++ .+|++++.||.|++||+.+........
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGN-----WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSS-----CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCC-----ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 99999999999999988888765443 49999999999 899999999999999998765332210
Q ss_pred ---------------------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 337 ---------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 337 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.....|..++++++|+|+|++|++++.||.|+| |++.++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~----w~~~~~ 415 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI----TNPKIS 415 (416)
T ss_dssp -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC----BCCCCC
T ss_pred ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE----EEeccC
Confidence 001126778889999999999999999999999 999875
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-44 Score=332.02 Aligned_cols=301 Identities=26% Similarity=0.456 Sum_probs=264.4
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
.+.....|+. ..+....+.+|...|++++|+|+++.|++++.|+.|++||. +++....+..|...|.+++|+|+++.+
T Consensus 241 ~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l 318 (577)
T 2ymu_A 241 DDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI 318 (577)
T ss_dssp TTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE
Confidence 3445566764 34677889999999999999999999999999999999995 567788889999999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++++.|+.|++|+.... ....+.+|...+.+++|+|++ .++++++.|+.|++||. +++....+ ..
T Consensus 319 ~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~-----~~ 383 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTL-----TG 383 (577)
T ss_dssp EEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEE-----EC
T ss_pred EEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEe-----cC
Confidence 99999999999998653 355678899999999999998 78999999999999996 45666666 67
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
|...|.+++|+| ++++|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++.
T Consensus 384 ~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~ 459 (577)
T 2ymu_A 384 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQL 459 (577)
T ss_dssp CSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCE
T ss_pred CCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCE
Confidence 899999999999 88899999999999999964 36788889999999999999999999999999999999964 566
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
+..+..+. ..|++++|+|++++|++++.|+.|++||. +++.+..+ .+|...|++++|+|+|++|++++.|
T Consensus 460 ~~~~~~~~-----~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 460 LQTLTGHS-----SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp EEEEECCS-----SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEEcCCC-----CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcCCCCEEEEEECc
Confidence 66655433 35999999999999999999999999995 67788888 7899999999999999999999999
Q ss_pred CeeEEeecceecccCc
Q 016458 365 TNLKVNLGFWRVQEGA 380 (389)
Q Consensus 365 g~i~i~~~~W~~~~~~ 380 (389)
|.|++ ||.....
T Consensus 530 g~v~l----wd~~~~~ 541 (577)
T 2ymu_A 530 KTVKL----WNRNGQL 541 (577)
T ss_dssp SEEEE----ECTTSCE
T ss_pred CEEEE----EeCCCCE
Confidence 99999 9975433
No 30
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-45 Score=309.77 Aligned_cols=266 Identities=23% Similarity=0.331 Sum_probs=240.6
Q ss_pred cccCCCCCcccCCCc--ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC
Q 016458 42 SRSQGRAPVSFGPTD--LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 119 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 119 (389)
..+.+.....|+... ......+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..+...+.+++|+|
T Consensus 53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred EEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 345556667776543 345567999999999999999999999999999999999999999999999988999999999
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
++++|++|+.||.|++|++..+. ....+..|...|.+++|+|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~-- 202 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTL-- 202 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred CCCEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEE--
Confidence 99999999999999999998755 456677888999999999998 78999999999999999999998888
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (389)
..|...|.+++|+| ++.+|++++.|+.|++||++.. .....+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus 203 ---~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 203 ---EGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp ---CCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ---cccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 78999999999999 8899999999999999999987 778889999999999999999999999999999999999
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
++++.+..+..+.. .|.+++|+|++++|++++.||.|++||..
T Consensus 278 ~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 278 GTRTCVHTFFDHQD-----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99998888755433 59999999999999999999999999963
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-45 Score=319.08 Aligned_cols=298 Identities=17% Similarity=0.267 Sum_probs=253.1
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45599999999999999999999999999999999887 8888899999999999999999999999999999999976
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCCCCCCeeEEEeeCC
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
+. ......+..|...|.+++|+|++ .++++++.|+.|++||+..+.. ...+. ..|...|.+++|+|
T Consensus 84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~- 152 (372)
T 1k8k_C 84 RT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KPIRSTVLSLDWHP- 152 (372)
T ss_dssp TE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TTCCSCEEEEEECT-
T ss_pred Ce-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee----cccCCCeeEEEEcC-
Confidence 43 11233446789999999999997 7899999999999999988763 22221 56789999999999
Q ss_pred CCcEEEEeeCCCceEEEeCCC-----------------CCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC
Q 016458 218 NSRMFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 280 (389)
++++|++++.||.|++||++. ....+..+..|...|.+++|+|++++|++++.||.|++||++
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 888999999999999999641 226677777899999999999999999999999999999999
Q ss_pred CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc--ceEEE--ee---------------------
Q 016458 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVL--NL--------------------- 335 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~~--------------------- 335 (389)
+++.+..+..+.. ++.+++|+|+++++++| .|+.|++|++.. +.... .+
T Consensus 233 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 233 KKMAVATLASETL-----PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp GTTEEEEEECSSC-----CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred CCceeEEEccCCC-----CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 9998888765433 49999999999988888 999999999987 43110 00
Q ss_pred ------------cCcCCCCCCCeeEEEEC-CCC---CeEEeeeCCCeeEEeecceecccCcc
Q 016458 336 ------------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 336 ------------~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
.....+|..+|++++|. ++| .+|++|+.||.|++ |++.+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~----W~~~~~~~ 364 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI----WDVRSLES 364 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE----EEHHHHHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEE----EEecChhH
Confidence 11224899999999976 676 99999999999999 99988653
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-46 Score=327.78 Aligned_cols=305 Identities=15% Similarity=0.201 Sum_probs=238.9
Q ss_pred eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEE--EeeCCCcEEEEEECC-CCcEEEEecCCCcE
Q 016458 58 VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHA--IKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 133 (389)
.......+|...|+||+|+| ++++||+|+.||+|+|||+.+++.... +.+|.+.|++++|+| ++++|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34445667999999999999 567999999999999999988765544 457889999999998 68999999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++||++... .........+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+ ..|...|.+++
T Consensus 190 ~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~ 257 (435)
T 4e54_B 190 RLQDFKGNI-----LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVA 257 (435)
T ss_dssp EEEETTSCE-----EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEE
T ss_pred EEeeccCCc-----eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeee
Confidence 999997632 11122222344567899999997 78999999999999998754 34444 68999999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
|+|....++++++.|+.|++||++.... .+....+|...|.+++|+|++.+|++++.||.|++||+.++.....+..+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 9996677999999999999999987632 23334679999999999999999999999999999999998877666443
Q ss_pred CCC-CCCCCeeEEEeCCCCCEEEEEe------------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEE-EECCCCCe
Q 016458 292 HGE-NEIPHVTSIAFSISGRLLFAGY------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSA 357 (389)
Q Consensus 292 ~~~-~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~ 357 (389)
... .....+....|+|++.+++++. .++.|++||..+++.+..+. .+|...|.++ +|+|+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---DPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---CSSCCCCCCEEEECTTSSC
T ss_pred cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---CCCCCcEEEEEEECCCCCE
Confidence 221 1111234456777777666654 23579999999999988874 5788889887 69999999
Q ss_pred EEeeeCCCeeEEeecceecccCccc
Q 016458 358 LCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 358 l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
|++|+ |+.|+| |++++|+..
T Consensus 415 lasg~-d~~i~i----W~~~~gk~r 434 (435)
T 4e54_B 415 LASAM-GYHILI----WSQQEARTR 434 (435)
T ss_dssp EEEEC-SSEEEE----CCCC-----
T ss_pred EEEEc-CCcEEE----EECCcCeee
Confidence 99876 889999 999999764
No 33
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=317.04 Aligned_cols=311 Identities=20% Similarity=0.272 Sum_probs=255.7
Q ss_pred cCCCcceeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEe-------------eCCCcEEEEEE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIK-------------LPCAWVMTCAF 117 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-------------~~~~~v~~~~~ 117 (389)
|+.........+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+. .|...|.+++|
T Consensus 28 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 107 (408)
T 4a11_B 28 LGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107 (408)
T ss_dssp HTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE
T ss_pred eccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE
Confidence 33444455667889999999999999 99999999999999999999887665554 48889999999
Q ss_pred CC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC--cEEEEeeCCCeEEEEeCCCCeeE
Q 016458 118 SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRT 194 (389)
Q Consensus 118 ~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 194 (389)
+| ++.+|++++.||.|++||+.++. ....+ .+...+.++.+++.+. .++++++.||.|++||+.++...
T Consensus 108 ~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 108 YPHDTGMFTSSSFDKTLKVWDTNTLQ-------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp CTTCTTCEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred ccCCCcEEEEEeCCCeEEEeeCCCCc-------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 99 78899999999999999998744 33333 3678899999998642 48999999999999999999888
Q ss_pred EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE---------------eeeccceEEEEEe
Q 016458 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------------HGHEGDVNTVKFF 259 (389)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~i~~~~~~ 259 (389)
..+ ..|...|.+++|+|....++++++.||.|++||++.....+..+ ..|...|.+++|+
T Consensus 180 ~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 180 HIL-----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp EEE-----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred eee-----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 888 68999999999999555579999999999999998775455554 5788999999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
|++++|++++.||.|++||+++++................+........+..+++++.++.|++||+.+++.+..+
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---- 330 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---- 330 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE----
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee----
Confidence 9999999999999999999999877655443322222222333333444566777788999999999999999999
Q ss_pred CCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 340 NSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 340 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.+|...|++++|+|++++|++++.||.|++ |++.+++..+
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i----w~~~~~~~~~ 370 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILA----WVPSLYEPVP 370 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEE----EEECC-----
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEEE----EeCCCCCccC
Confidence 789999999999999999999999999999 9999987664
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=308.29 Aligned_cols=249 Identities=20% Similarity=0.238 Sum_probs=213.3
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE----eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++..... .+|...|++++|+|++++|++|+.|+.|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999985 7889999999999999998866543 47889999999999999999999999999999987
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
+. ....+.+|...|.+++|++++..+|++++.|+.|++||+++++....+.. ..+...+.+++|+|.+++
T Consensus 159 ~~-------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 159 QV-------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp TE-------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTT
T ss_pred Cc-------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceeeccceeeeecCCCCc
Confidence 55 67888999999999999999877899999999999999999988877632 345567899999998888
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
+|++|+.||.|++||+++. +++..+.+|...|++++|+|++ ++|++|+.|+.|++||+++++... +. .|...
T Consensus 229 ~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----~H~~~ 301 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----AHRDF 301 (344)
T ss_dssp EEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----CCSSC
T ss_pred ceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----CCCCC
Confidence 9999999999999999987 7888999999999999999987 579999999999999999876543 32 34446
Q ss_pred eeEEEeCCCCC-EEEEEecCCcEEEEEcccceE
Q 016458 300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 331 (389)
|++++|+|+++ +|++++.||.|++|++.+...
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999986 677899999999999976543
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.3e-44 Score=304.51 Aligned_cols=302 Identities=19% Similarity=0.338 Sum_probs=250.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhcccc--------------------------cccccccCCCCCcc
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQ-----KRQQLLDVD--------------------------VAGYSRSQGRAPVS 51 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 51 (389)
+.+++++++.+++++++++.++.... ......... ......+.+.....
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~i 81 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLII 81 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCCCCCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCccccccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 56788888888888888877666332 111100000 00112223444567
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC----eeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (389)
|+.........+..|...|.+++|+|++++|++|+.|+.|++|++.+.. ....+..|...|.++.|++++. ++++
T Consensus 82 Wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~ 160 (340)
T 1got_B 82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160 (340)
T ss_dssp EETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEE
T ss_pred EECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEE
Confidence 7777788888999999999999999999999999999999999998763 4556778999999999998876 8889
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
+.|+.|++||+.++. ....+.+|.+.|.+++|+|++ .++++|+.|+.|++||++++.....+ ..|..
T Consensus 161 s~d~~i~~wd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~-----~~h~~ 227 (340)
T 1got_B 161 SGDTTCALWDIETGQ-------QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTF-----TGHES 227 (340)
T ss_dssp ETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEE-----CCCSS
T ss_pred ECCCcEEEEECCCCc-------EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEE-----cCCcC
Confidence 999999999998754 567788999999999999987 78999999999999999999998888 78999
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 285 (389)
.|.+++|+| ++++|++|+.||.|++||++.. ..+..+.. +...|.+++|+|++++|++|+.||.|++||+.++...
T Consensus 228 ~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 228 DINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 999999999 8899999999999999999976 45544432 2347999999999999999999999999999998888
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
..+..+.. .|.+++|+|+|.+|++|+.||.|++||
T Consensus 306 ~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDN-----RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCC-----cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 77755443 599999999999999999999999996
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.8e-45 Score=314.25 Aligned_cols=297 Identities=20% Similarity=0.320 Sum_probs=245.3
Q ss_pred cceeee-ecccccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEee-----CCCcEEEEEECCC----C
Q 016458 56 DLVCCR-TLQGHAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKL-----PCAWVMTCAFSPT----G 121 (389)
Q Consensus 56 ~~~~~~-~l~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~ 121 (389)
.+.+.. ...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +
T Consensus 6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 344433 44489999999999984 45677777788999999998887777664 4477999999998 6
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
.+|++|+.||.|++||+.++. ....+.+|...|.+++|+|++..+|++++.||.|++||+.+++....+...
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 157 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV- 157 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-
T ss_pred CEEEEecCCCEEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-
Confidence 799999999999999998754 567788999999999999943489999999999999999999888776221
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee----------------------------EEeeeccce
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----------------------------TFHGHEGDV 253 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~~i 253 (389)
..|...|.+++|+| ++++|++++.||.|++||+++. .... ....|...|
T Consensus 158 -~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 158 -EGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp -TSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred -ccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 36889999999999 8889999999999999999865 3222 223388999
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCce--------------eeEeeccCCCCCCCCeeEEEeCCC--CCEEEEEec
Q 016458 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYS 317 (389)
Q Consensus 254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 317 (389)
.+++|+ +++|++++.||.|++||++++.. +..+.. +...|.+++|+|+ +++|++|+.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-----SQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-----SSCCSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-----cCCcEEEEEEcCCCCCcEEEEEec
Confidence 999998 77999999999999999987654 333332 2335899999999 999999999
Q ss_pred CCcEEEEEcccceE----EEeecCcCCCC--CCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 318 NGDCYVWDTLLAKV----VLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 318 dg~i~i~d~~~~~~----~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
||.|++||+.+++. ...+ ..| ...|++++|+|++++|++++.||.|++ ||+.+
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i----wd~~~ 366 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTL----THHKCGAAIRQTSFSRDSSILIAVCDDASIWR----WDRLR 366 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEE----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEE----EEC--
T ss_pred CCcEEEEECCCCCCccccceEE----cccccCCceEEEEeCCCCCeEEEEeCCCEEEE----EEecC
Confidence 99999999998753 3355 455 789999999999999999999999999 99863
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.2e-45 Score=313.07 Aligned_cols=305 Identities=18% Similarity=0.263 Sum_probs=245.5
Q ss_pred eeeeecccccCcEEEEEEcCCCCeE-EEEec---CCcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCC---CcEEEEecC
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRI-VSASQ---DGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPT---GQSVACGGL 129 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~---dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~~ 129 (389)
...+.+.+|.+.|++++|+|++..+ ++|+. ||.|++||+.+++...... .|...|.+++|+|+ +.+|++|+.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 3445678899999999999999655 55655 8999999999988765543 67889999999998 699999999
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE------eeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCccc
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ 202 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 202 (389)
||.|++||+..+. .....+.+|...|.++.| +|++ .+|++++.||.|++||+.++. ....+... .
T Consensus 89 dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~ 160 (357)
T 3i2n_A 89 GGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPV-Q 160 (357)
T ss_dssp TSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCC-T
T ss_pred CCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceecccc-C
Confidence 9999999998743 145667899999999966 4665 689999999999999999886 55555211 0
Q ss_pred CCCCCCeeEEE----eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec---CCCEEEEEecCCeEE
Q 016458 203 SGHTADVLSVS----ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCR 275 (389)
Q Consensus 203 ~~~~~~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~ 275 (389)
......+.+++ |+| ++.++++++.||.|++||+++. .. .....|...|.+++|+| ++.+|++++.||.|+
T Consensus 161 ~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 12234788988 566 8899999999999999999976 33 44567889999999999 999999999999999
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccc-------------------eEEEee
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA-------------------KVVLNL 335 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~ 335 (389)
+||+++++....+.......+...|++++|+|+++ +|++++.||.|++||+..+ +.+..+
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99998876655544211123344699999999998 8999999999999999754 345555
Q ss_pred cCcCCCCCCCeeEEEECCCCCeEE-eeeCCCeeEEeecceecccCcc
Q 016458 336 GSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
..|...|++++|+|++++|+ +++.||.|++ |++.+.++
T Consensus 318 ----~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i----w~~~~~~~ 356 (357)
T 3i2n_A 318 ----TLSTQPISSLDWSPDKRGLCVCSSFDQTVRV----LIVTKLNK 356 (357)
T ss_dssp ----ECCSSCEEEEEECSSSTTEEEEEETTSEEEE----EEECC---
T ss_pred ----ccCCCCeeEEEEcCCCCeEEEEecCCCcEEE----EECCCccc
Confidence 68999999999999999998 8999999999 99987654
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-43 Score=310.15 Aligned_cols=295 Identities=22% Similarity=0.396 Sum_probs=248.1
Q ss_pred eeeeecccccCc--EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEE
Q 016458 58 VCCRTLQGHAGK--VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCS 134 (389)
Q Consensus 58 ~~~~~l~~h~~~--v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 134 (389)
.......+|... +.+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 82 ERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp SEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 334445577765 45566665 5688889999999999999998888776 678899999999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEE
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
+||+.++. ....+.+|...|.++.|++ .++++++.||.|++||++ .......+ ..|...|.+++
T Consensus 160 iwd~~~~~-------~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~ 224 (401)
T 4aez_A 160 IYDVESQT-------KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEVCGLA 224 (401)
T ss_dssp EEETTTCC-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEE
T ss_pred EEECcCCe-------EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCeeEEE
Confidence 99998754 6677889999999999943 689999999999999998 45556666 68999999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEe--cCCeEEEEECCCCceeeEeec
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGS--DDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 290 (389)
|+| ++.+|++++.||.|++||+++. .....+..|...|.+++|+|++. ++++++ .|+.|++||+++++....+..
T Consensus 225 ~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 225 WRS-DGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred EcC-CCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 999 8899999999999999999987 77788888999999999999664 555654 799999999999988877753
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEE--EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
. ..+.+++|+|+++++++ |+.||.|++||+.++........ .+|...|.+++|+|++++|++++.||.|+
T Consensus 303 ~------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 303 G------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp S------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--ECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred C------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--cCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 2 24999999999999999 44899999999998665544311 68999999999999999999999999999
Q ss_pred EeecceecccCcccC
Q 016458 369 VNLGFWRVQEGALSP 383 (389)
Q Consensus 369 i~~~~W~~~~~~~~~ 383 (389)
+ |++.+++...
T Consensus 375 i----w~~~~~~~~~ 385 (401)
T 4aez_A 375 F----WRVYDGDHVK 385 (401)
T ss_dssp E----EECCC-----
T ss_pred E----EECCCCcccc
Confidence 9 9999987643
No 39
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-44 Score=317.79 Aligned_cols=306 Identities=13% Similarity=0.202 Sum_probs=246.5
Q ss_pred ccCCCcceeeeec-ccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCC---CC---eeEEEeeCCCcEEEEEECCCCc
Q 016458 51 SFGPTDLVCCRTL-QGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT---SQ---KTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 51 ~~~~~~~~~~~~l-~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
.|++. .+.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|+++
T Consensus 47 ~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNLR-GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGCC-CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccccc-ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 46644 4566677 99999999999999 999999999999999999876 43 23333 4889999999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeec----------c--cccceEEEE--EeeCCCcEEEEeeCCCeEEEEeC
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------G--HKGYVSCCQ--YVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
+|++++.||.|++||+...... ....... . +...+.++. +++++ .++++++.||.|++||+
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQE----SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEET----TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEET
T ss_pred EEEEEeCCCEEEEEEeccccCC----ceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence 9999999999999999521000 0111111 1 455666766 34565 78999999999999999
Q ss_pred CCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEec----C
Q 016458 189 TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFP----D 261 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~ 261 (389)
++++....+ .. |...|.+++|+| ++++|++|+.||.|++||++.. ..+..+. .|..+|.+++|+| +
T Consensus 200 ~~~~~~~~~-----~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 200 RTLERLQII-----ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp TTCCEEEEE-----ECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred CCCeeeEEE-----ccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCC
Confidence 999998888 44 788999999999 7899999999999999999986 7777775 7788999996665 6
Q ss_pred CCEEEEEecCCeEEEEECCCCceeeEeeccCC---------------------CCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458 262 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLFAGYSNGD 320 (389)
Q Consensus 262 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (389)
+.+|++++.||.|++||+++++....+..+.. ..+...|++++|+ ++++|++|+.||.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 77999999999999999999988777764321 1145568999999 7899999999999
Q ss_pred EEEEEcccceEEEeecCc---------------------------------CCCCCCCeeEEEECCC--CCeEEeeeCCC
Q 016458 321 CYVWDTLLAKVVLNLGSL---------------------------------QNSHEGRITCLGLSAD--GSALCTGSWDT 365 (389)
Q Consensus 321 i~i~d~~~~~~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~--~~~l~~~~~dg 365 (389)
|++||+.+++....+... ...|...|++++|+++ +.+|++|+.||
T Consensus 352 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG 431 (437)
T 3gre_A 352 IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG 431 (437)
T ss_dssp EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS
T ss_pred EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc
Confidence 999999988766655310 0228999999999988 78999999999
Q ss_pred eeEEeeccee
Q 016458 366 NLKVNLGFWR 375 (389)
Q Consensus 366 ~i~i~~~~W~ 375 (389)
.|+| |+
T Consensus 432 ~I~i----w~ 437 (437)
T 3gre_A 432 LIGI----FQ 437 (437)
T ss_dssp CEEE----EC
T ss_pred eEEE----eC
Confidence 9999 95
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-45 Score=319.17 Aligned_cols=297 Identities=15% Similarity=0.285 Sum_probs=251.0
Q ss_pred cCcEEEEEEcCCCC-eEEEE----------ecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 67 AGKVYSLDWTSERN-RIVSA----------SQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~~~----------~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
...|.+++|+|+++ +|++| +.|+.|++||+.++. .+..+ .|...|.+++|+|++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 34689999999987 99999 889999999998875 33333 47788999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe------eEEEecCcccCCCC
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHT 206 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~ 206 (389)
|++|++..... .......+.+|...|.+++|+|++..+|++++.||.|++||+.++. ....+ .....|.
T Consensus 91 v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~ 165 (416)
T 2pm9_A 91 LELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSSV 165 (416)
T ss_dssp EEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCSS
T ss_pred EEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCCC
Confidence 99999986321 1225677889999999999999855899999999999999999876 22221 1125688
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------ccceEEEEEecCC-CEEEEEecCC---eEEE
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDG-NRFGTGSDDG---TCRL 276 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i 276 (389)
..|.+++|+|.++.+|++++.||.|++||++.. ..+..+..+ ...|.+++|+|++ .++++++.|+ .|++
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 899999999955899999999999999999987 677777766 7889999999987 6899999998 9999
Q ss_pred EECCCC-ceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 277 FDIRTG-HQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 277 ~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
||++++ .....+.. .+...|.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|++++|+|+
T Consensus 245 ~d~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQ----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PARGNWCFKTKFAPE 316 (416)
T ss_dssp EETTSTTSCSBCCCS----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE----ECSSSCCCCEEECTT
T ss_pred EeCCCCCCCcEEeec----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee----cCCCCceEEEEECCC
Confidence 999986 34444330 2334699999999 9999999999999999999999999988 789999999999999
Q ss_pred C-CeEEeeeCCCeeEEeecceecccCccc
Q 016458 355 G-SALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 355 ~-~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+ .+|++++.||.|++ |++.+++..
T Consensus 317 ~~~~l~s~~~d~~i~i----w~~~~~~~~ 341 (416)
T 2pm9_A 317 APDLFACASFDNKIEV----QTLQNLTNT 341 (416)
T ss_dssp CTTEEEECCSSSEEEE----EESCCCCCS
T ss_pred CCCEEEEEecCCcEEE----EEccCCCCC
Confidence 8 89999999999999 999987643
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-43 Score=334.94 Aligned_cols=296 Identities=22% Similarity=0.352 Sum_probs=262.9
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
+...+.|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
++.++. ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++ .....+ ..|...|.+++|+
T Consensus 83 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 83 NYNTGE-------KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHEHFVMCVAFN 149 (814)
T ss_dssp ETTTCC-------EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEE-----ECCSSCEEEEEEE
T ss_pred ECCCCc-------EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEE-----cCCCCcEEEEEEE
Confidence 998755 667788899999999999998 68999999999999999987 555666 6789999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
|.++..+++++.||.|++||++.. .....+.. +...+.+++|+| ++.+|++++.||.|++||+.+++....+..+.
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 967789999999999999999877 44445544 448899999999 99999999999999999999998887775543
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe-EEeeeCCCeeEEee
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKVNL 371 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~~ 371 (389)
. .|.+++|+|+++++++++.||.|++||+.+++....+ ..|...+.+++|+|++.. +++++.|+.+.+
T Consensus 229 ~-----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-- 297 (814)
T 3mkq_A 229 S-----NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFDNGFTV-- 297 (814)
T ss_dssp S-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEEECTTCGGGEEEEEETTEEEE--
T ss_pred C-----CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEEEccCCCceEEEEEeCCCEEE--
Confidence 3 4999999999999999999999999999999999888 788899999999999874 255556777888
Q ss_pred cceecccC
Q 016458 372 GFWRVQEG 379 (389)
Q Consensus 372 ~~W~~~~~ 379 (389)
|++..+
T Consensus 298 --~~~~~~ 303 (814)
T 3mkq_A 298 --LSLGND 303 (814)
T ss_dssp --EECSCC
T ss_pred --EEcCCC
Confidence 887654
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-43 Score=313.12 Aligned_cols=311 Identities=12% Similarity=0.162 Sum_probs=251.3
Q ss_pred CCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE
Q 016458 47 RAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126 (389)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 126 (389)
.....|+.........+.+| ..+....|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++
T Consensus 78 ~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 156 (420)
T 3vl1_A 78 GHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALIS 156 (420)
T ss_dssp TEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEE
Confidence 33445666666666666666 45566678999999999999999999999999888888899999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 206 (389)
++.|+.|++||+.++. ....+.+|...|.+++|+|++ .+|++++.||.|++||+.+++....+... ..+.
T Consensus 157 ~s~d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~~ 226 (420)
T 3vl1_A 157 SSQDMQLKIWSVKDGS-------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRK--ENPH 226 (420)
T ss_dssp EETTSEEEEEETTTCC-------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBT--TBTT
T ss_pred EeCCCeEEEEeCCCCc-------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecC--CCCC
Confidence 9999999999998754 456778999999999999997 78999999999999999999988887432 1233
Q ss_pred CCeeE---------------------EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-E
Q 016458 207 ADVLS---------------------VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-R 264 (389)
Q Consensus 207 ~~v~~---------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 264 (389)
..+.+ ++|+| ++++|++++.||.|++||+++..........|...|.+++|+|++. +
T Consensus 227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY 305 (420)
T ss_dssp CCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE
T ss_pred CCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE
Confidence 44444 44566 7889999999999999999987444444455888999999999998 9
Q ss_pred EEEEecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee---c--Cc
Q 016458 265 FGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---G--SL 338 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~--~~ 338 (389)
|++++.||.|++||+++++. +..+..++. ..+.++.+ +++++|++++.||.|++||+........+ . ..
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~ 380 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEG----TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF 380 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTT----SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCC----CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccE
Confidence 99999999999999998754 555544332 24777755 57889999999999999998763211100 0 01
Q ss_pred CCCCCCCeeEEEECCCCC---eEEeeeCCCeeEEeecceeccc
Q 016458 339 QNSHEGRITCLGLSADGS---ALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 339 ~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
...|.+.|.+++|+|++. .+++++.+|.+.+ |++++
T Consensus 381 ~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~----~~~~~ 419 (420)
T 3vl1_A 381 LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL----YNLSN 419 (420)
T ss_dssp ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE----EESCC
T ss_pred EccCCcceEEEEEccCCCCcceEEEEcCCceEEE----EeccC
Confidence 157888999999999999 7888889999999 99875
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8e-43 Score=299.38 Aligned_cols=262 Identities=20% Similarity=0.372 Sum_probs=230.2
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC------CeeEEEeeCCCcEEEEEEC
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~ 118 (389)
.+.....|+.......+.+..|...|.+++|+|++.+|++|+.|+.+++|++... .....+..|...|.+++|+
T Consensus 84 ~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC
T ss_pred CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe
Confidence 3445567877777888889999999999999999999999999999999998643 3456778899999999999
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEe
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVF 197 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 197 (389)
|++..|++++.|+.|++||+.++. ....+.+|...|.++.|+|+. ..+|++|+.||.|++||+++++....+
T Consensus 164 ~~~~~l~t~s~D~~v~lwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 164 NSDMQILTASGDGTCALWDVESGQ-------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCe-------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 999999999999999999998755 677888999999999998853 378999999999999999999998888
Q ss_pred cCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEecCCCEEEEEecCCeEE
Q 016458 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
..|...|.+++|+| ++++|++++.|+.|++||++.. ..+..+..+ ...+.+++|+|++.+|++++.|+.|+
T Consensus 237 -----~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 237 -----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp -----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 78999999999999 8899999999999999999976 445444433 34689999999999999999999999
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
+||+.++..+..+..+. ..|++++|+|+|++|++|+.||.|++|+
T Consensus 310 vwd~~~~~~~~~l~~h~-----~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKGSRVSILFGHE-----NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTCSEEEEECCCS-----SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCceEEEEECCC-----CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999998887765433 3599999999999999999999999996
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-42 Score=308.27 Aligned_cols=296 Identities=21% Similarity=0.361 Sum_probs=252.7
Q ss_pred ceeeeecccccCcE-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEE
Q 016458 57 LVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (389)
Q Consensus 57 ~~~~~~l~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 135 (389)
......+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+..|.+.|.+++|+|++ .+++|+.||.|++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 34567899999874 67776 45699999999999999999999999999999999999999988 8999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCCeEEEEeCCCCeeEEEecC---------------
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGG--------------- 199 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------- 199 (389)
||+.++. ....+.+|...|.+++|++. +..++++++.||.|++||+.++........
T Consensus 188 wd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 188 WDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp EETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred EECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 9998754 66778899999999999963 237899999999999999988753321100
Q ss_pred ---cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458 200 ---EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (389)
Q Consensus 200 ---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (389)
....+|...+.++. + +++++++++.||.|++||+++. ..+..+.+|...|.+++|+|+++++++++.||.|++
T Consensus 261 ~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336 (464)
T ss_dssp TEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 01156778888774 4 6689999999999999999987 788889999999999999999999999999999999
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
||+++++.+..+..+.. .|.+++|+ +++|++++.||.|++||+.++...... .+...+..++|+++++
T Consensus 337 wd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 337 WDLENGELMYTLQGHTA-----LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDN 404 (464)
T ss_dssp EETTTTEEEEEECCCSS-----CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----ECTTCCCEEEEEECSS
T ss_pred EECCCCcEEEEEeCCCC-----cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----cCCCCccEEEEEeCCC
Confidence 99999988888755433 59999997 579999999999999999988777665 3666788899999999
Q ss_pred eEEeeeCCCeeEEeecceecccCcccC
Q 016458 357 ALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 357 ~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+|++++ ||.|++ ||+.+|++..
T Consensus 405 ~l~~~~-dg~i~i----wd~~~g~~~~ 426 (464)
T 3v7d_B 405 ILVSGS-ENQFNI----YNLRSGKLVH 426 (464)
T ss_dssp EEEEEE-TTEEEE----EETTTCCEEE
T ss_pred EEEEec-CCeEEE----EECCCCcEEe
Confidence 999988 999999 9999998764
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.2e-43 Score=298.47 Aligned_cols=289 Identities=22% Similarity=0.336 Sum_probs=249.9
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
|.++|.+++|+|+|++++++..++.+..|.............|...|.+++|+|+++++++++ ||.|++|++..+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~- 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK- 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-
Confidence 566899999999999999988888777776655555555567889999999999999999999 999999999875421
Q ss_pred CCCcceeee--cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCCCcE
Q 016458 146 GNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (389)
Q Consensus 146 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (389)
.....+ ..|...|.+++|+|++ +++++++.||.|++||+.++. ....+ ..|...+.+++|+| ++++
T Consensus 86 ---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~ 155 (337)
T 1gxr_A 86 ---SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAEL-----TSSAPACYALAISP-DSKV 155 (337)
T ss_dssp ---SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEE-----ECSSSCEEEEEECT-TSSE
T ss_pred ---eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeec-----ccCCCceEEEEECC-CCCE
Confidence 122222 3788999999999987 789999999999999999887 44444 57888999999999 8889
Q ss_pred EEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCee
Q 016458 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~ 301 (389)
+++++.||.|++||+++. +....+..|...+.+++|+|++++|++++.||.|++||+++++....+... ..+.
T Consensus 156 l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~v~ 228 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT------SQIF 228 (337)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS------SCEE
T ss_pred EEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC------CceE
Confidence 999999999999999987 778888899999999999999999999999999999999998877766432 2489
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
+++|+|+++++++++.+|.|++||+.+++.. .+ ..|...|.+++|+|++++|++++.||.|++ |++.+++.
T Consensus 229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~----~~~~~~~~ 299 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL----HLHESCVLSLKFAYCGKWFVSTGKDNLLNA----WRTPYGAS 299 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE----CCCSSCEEEEEECTTSSEEEEEETTSEEEE----EETTTCCE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EE----cCCccceeEEEECCCCCEEEEecCCCcEEE----EECCCCeE
Confidence 9999999999999999999999999988764 34 678999999999999999999999999999 99998876
Q ss_pred c
Q 016458 382 S 382 (389)
Q Consensus 382 ~ 382 (389)
.
T Consensus 300 ~ 300 (337)
T 1gxr_A 300 I 300 (337)
T ss_dssp E
T ss_pred E
Confidence 5
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-45 Score=317.51 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=230.6
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.+..|.++|++++|+|++++|++|+.||.|++||+.++ +....+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999988 7788888999999999999999999999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee---EEEecCcccCC-CCCCeeEEEee
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---TSVFGGEFQSG-HTADVLSVSIS 215 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~v~~~~~~ 215 (389)
.+. .......+..|...|.+++|+|++ .+|++++.|+.|++||+.++.. ...+ .. |...|.+++|+
T Consensus 86 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 86 PDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL-----KRPLRSTILSLDWH 155 (377)
T ss_dssp -------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE-----CSSCCSCEEEEEEC
T ss_pred CCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe-----ecccCCCeEEEEEc
Confidence 743 233456677899999999999987 7899999999999999998863 4555 34 89999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCC-----------------CcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
| ++++|++++.|+.|++||++.. ...+..+ +|...|.+++|+|++++|++++.||.|++||
T Consensus 156 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 156 P-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp T-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred C-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9 8899999999999999998522 1334444 7999999999999999999999999999999
Q ss_pred CCCCce----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE--E--------------------
Q 016458 279 IRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--V-------------------- 332 (389)
Q Consensus 279 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~-------------------- 332 (389)
+++++. +..+..+ ...|.+++|+|++++|++|+.++ +.+|+...... .
T Consensus 234 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS-----QLPLRSLLWANESAIVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp ECSTTSCEEECCCEECS-----SSCEEEEEEEETTEEEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred CCCCCCcceeeEeecCC-----CCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCCceEEEeeeccccccccccccccccc
Confidence 999877 4444433 33599999999999999887665 45776642110 0
Q ss_pred --------------Eee------------cCcCCCCCCCeeEEEECCCC-C---eEEeeeCCCeeEEeecceec
Q 016458 333 --------------LNL------------GSLQNSHEGRITCLGLSADG-S---ALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 333 --------------~~~------------~~~~~~~~~~v~~~~~~~~~-~---~l~~~~~dg~i~i~~~~W~~ 376 (389)
..+ ......|.+.|+++++.+.. . .|+|||.||.|++ ||+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i----Wdl 377 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL----WTL 377 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE----ECC
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE----ecC
Confidence 000 00112499999999976643 3 5999999999999 985
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-42 Score=290.98 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=212.9
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC--CCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEEE
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIF 136 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vw 136 (389)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|.++|.+++|+++ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 3677889999999999999864 8999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeEEE
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~ 213 (389)
|+.++. ......+..|...|.+++|+|+. ..+|++++.|+.|++||+.++.. ...+ ..|...|.+++
T Consensus 83 d~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-----~~h~~~v~~~~ 152 (297)
T 2pm7_B 83 KEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNSAS 152 (297)
T ss_dssp EBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-----ECCSSCEEEEE
T ss_pred EcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-----ecccCccceEe
Confidence 998642 22345677899999999999972 26899999999999999987632 2333 57889999999
Q ss_pred eeCCC------------CcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecCC---CEEEEEecCCeEE
Q 016458 214 ISGSN------------SRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCR 275 (389)
Q Consensus 214 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~ 275 (389)
|+|.. +++|++|+.|+.|++||++.... ....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 99842 56999999999999999987532 456788899999999999984 8999999999999
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+||++...............+...+.+++|+|+|++|++++.||.|++|+..
T Consensus 233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999875321111111112234469999999999999999999999999976
No 48
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-42 Score=293.23 Aligned_cols=271 Identities=22% Similarity=0.387 Sum_probs=232.2
Q ss_pred cccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458 42 SRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~ 116 (389)
+.+.+.....|+... ..+.+.+.+|...|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 444555666775432 356778999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCC
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~ 191 (389)
|+|++.+|++|+.|+.|++||+... ....+.+|...|.++.|.|.. ...+++++.|+.|++||+.+.
T Consensus 115 ~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 115 IDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 9999999999999999999999642 466778999999999999853 247999999999999999999
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
.....+ .+|...|.+++|+| ++.+|++++.||.|++||+++. +.+..+.. ...|.+++|+|++.+|++++.+
T Consensus 187 ~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 187 QIEADF-----IGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETT
T ss_pred hhheee-----cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCC
Confidence 888887 78999999999999 8899999999999999999987 66666664 5689999999999999888755
Q ss_pred CeEEEEECCCCceeeEeeccC---CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 272 GTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
.+++|++........+.... ...+...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 259 -~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 259 -GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 59999998876665553321 1223446899999999999999999999999998764
No 49
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.6e-42 Score=300.01 Aligned_cols=279 Identities=22% Similarity=0.401 Sum_probs=241.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 146 (389)
.++.|+||++ ++||+|. |++|+|||..+++....+. .|...|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---- 180 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---- 180 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----
Confidence 3678999976 4777765 8999999999999887776 456789999999999999999999999999998755
Q ss_pred CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
....+.+|...+.++.+++ .++++|+.|+.+++||..... .+..+ ..|...+..+.++| ++.+++++
T Consensus 181 ---~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~ 248 (420)
T 4gga_A 181 ---RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASG 248 (420)
T ss_dssp ---EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEE
T ss_pred ---EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEe-----cccccceeeeeecC-CCCeeeee
Confidence 6778889999999988864 689999999999999988754 44455 68999999999999 88999999
Q ss_pred eCCCceEEEeCCCCC---cceeEEeeeccceEEEEEecCCC-EEEE--EecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 226 SCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGN-RFGT--GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
+.|+.+++||..... ..+.....|...|.+++|+|++. ++++ |+.|+.|++||+.++.....+.... .
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~------~ 322 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------Q 322 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS------C
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc------c
Confidence 999999999998653 24567778999999999999654 5554 4579999999999998888776543 3
Q ss_pred eeEEEeCCCCCEEEEEe--cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 300 VTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+.++.|+|+++.+++++ .||.|+|||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+|+| ||+.
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l~S~s~D~tvri----Wdv~ 394 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRL----WRCF 394 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEE----ECCS
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE----EECC
Confidence 89999999999888765 7899999999999999999 799999999999999999999999999999 9987
Q ss_pred cC
Q 016458 378 EG 379 (389)
Q Consensus 378 ~~ 379 (389)
+.
T Consensus 395 ~~ 396 (420)
T 4gga_A 395 EL 396 (420)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-43 Score=302.63 Aligned_cols=253 Identities=17% Similarity=0.213 Sum_probs=210.8
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE----EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
....+|...|++++|+|++. +++++.||+|+|||+.+++... ....|...|.+++|+|++++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34457999999999999975 5667889999999998876543 334688899999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
|+.++. ....+.+|...|.+++|+++++.++++++.||.|++||+++++....+.. ..+...+.+++|+|
T Consensus 167 d~~~~~-------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp 236 (357)
T 4g56_B 167 DLSQKA-------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHP 236 (357)
T ss_dssp ETTTTE-------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECT
T ss_pred ECCCCc-------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccccccccchhhhh
Confidence 998755 67788899999999999999877899999999999999999877665422 35677899999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 295 (389)
.++.+|++|+.|+.|++||+++. +.+..+.+|...|++++|+|++ ++|++++.||.|++||+++++.+..+ .
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------~ 309 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------S 309 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------C
T ss_pred cccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------C
Confidence 77889999999999999999987 7888999999999999999987 57999999999999999988766543 2
Q ss_pred CCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceE
Q 016458 296 EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 296 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
|...|++++|+| ++++|++++.||.|++||+.+...
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 344699999998 799999999999999999976433
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-42 Score=343.94 Aligned_cols=321 Identities=22% Similarity=0.339 Sum_probs=276.5
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECC--CCc
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQ 122 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 122 (389)
.+.....|+.........+.+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+| ++.
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence 344566788888889999999999999999999999999999999999999999999999999999999999999 566
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc--
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-- 200 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 200 (389)
++++|+.||.|++||+.++. ....+.+|.+.|.+++|+|++ .++++++.||.|++||+.++.....+...
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 786 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRF 786 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred EEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence 89999999999999998755 677788999999999999997 68999999999999999887655443210
Q ss_pred ------------------------------------------------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458 201 ------------------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (389)
Q Consensus 201 ------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (389)
....|...+.+++|+| ++.++++++.||.|+
T Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVE 865 (1249)
T ss_dssp C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEE
T ss_pred ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEE
Confidence 0126778899999999 889999999999999
Q ss_pred EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---------------------------
Q 016458 233 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL--------------------------- 285 (389)
Q Consensus 233 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------------- 285 (389)
+||+.+. ..+..+.+|...|.+++|+|++++|++++.||.|++||+......
T Consensus 866 vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 866 LWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred EEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 9999987 788889999999999999999999999999999999997532100
Q ss_pred --eEeeccCC---CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 286 --QVYYQQHG---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 286 --~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
........ ......+.+++|+|+++++++|+.+|.|++||+.+++....+ .+|...|++++|+|+|++|++
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG----VGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC----CCCSSCCCCEEECSSSSCEEE
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec----ccCCCceEEEEECCCCCEEEE
Confidence 00000000 011235899999999999999999999999999999988888 789999999999999999999
Q ss_pred eeCCCeeEEeecceecccCcccC
Q 016458 361 GSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 361 ~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
++.||.|++ |++.+++...
T Consensus 1021 ~~~dg~i~v----wd~~~~~~~~ 1039 (1249)
T 3sfz_A 1021 SSEDSVIQV----WNWQTGDYVF 1039 (1249)
T ss_dssp ECSSSBEEE----EETTTTEEEC
T ss_pred EcCCCEEEE----EECCCCceEE
Confidence 999999999 9999987654
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2e-42 Score=296.35 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=244.3
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEE
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCS 134 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 134 (389)
......+|.+.|++++|+|++++|++++.||.|++|++.++. ....+..|...|.+++|+|+++ +|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344567899999999999999999999999999999998887 3455668889999999999999 999999999999
Q ss_pred EEeC-CCCCCCCCCCcceeeecc--cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---------CeeEEEecCccc
Q 016458 135 IFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---------GLRTSVFGGEFQ 202 (389)
Q Consensus 135 vw~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~ 202 (389)
+|++ ..+. ...+.+ |...|.+++|+| + .++++++.|+.|++||+.+ ++....+
T Consensus 83 ~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----- 147 (342)
T 1yfq_A 83 KVDLIGSPS--------FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----- 147 (342)
T ss_dssp EECSSSSSS--------EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----
T ss_pred EEEeccCCc--------eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----
Confidence 9999 7643 366677 999999999999 5 7899999999999999986 5544443
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC-CCc-ceeEEeeeccceEEEEEec-CCCEEEEEecCCeEEEEEC
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 279 (389)
.+...+.+++|+| +. +++++.|+.|++||++. ... .......|...+.+++|+| +++++++++.||.|++|++
T Consensus 148 -~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 148 -KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp -SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred -eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 3788999999997 43 89999999999999997 433 3334556888999999999 9999999999999999999
Q ss_pred CCC------ceeeEeeccCC----CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC-CCCeeE
Q 016458 280 RTG------HQLQVYYQQHG----ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITC 348 (389)
Q Consensus 280 ~~~------~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~ 348 (389)
+.. +....+..+.. ..+...|.+++|+|++++|++++.||.|++||+.+++.+..+ ..| ..+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~ 299 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVVK 299 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSSEEEE
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh----hcccCCCceE
Confidence 886 55555554322 012346999999999999999999999999999999999888 677 999999
Q ss_pred EEECCCCCeEEeeeCCCe-eEE
Q 016458 349 LGLSADGSALCTGSWDTN-LKV 369 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~-i~i 369 (389)
++ |++++|++++.||. .+.
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHC
T ss_pred ec--CCCCeEEEEecCCccccc
Confidence 99 99999999999999 665
No 53
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-43 Score=303.70 Aligned_cols=272 Identities=18% Similarity=0.313 Sum_probs=229.8
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-------eeEEEeeCCCcEEEEE
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-------KTHAIKLPCAWVMTCA 116 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-------~~~~~~~~~~~v~~~~ 116 (389)
+.+.....|+.........+.+|...|.+++|+|++++|++|+.|+.|++||+.+.. ....+.+|.+.|.++.
T Consensus 85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 345556788888889999999999999999999999999999999999999986532 3455678999999999
Q ss_pred ECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-
Q 016458 117 FSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT- 189 (389)
Q Consensus 117 ~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 189 (389)
|+|+ +..|++|+.|+.|++||+.++. ....+ .+|...|.++.|++.+..+|++|+.|+.|++||++
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQ-------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCC-------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCc-------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 9996 4679999999999999998754 23333 57899999999988555899999999999999998
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-------cceEEEEEecCC
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-------GDVNTVKFFPDG 262 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~ 262 (389)
.+.....+ .+|...|.+++|+| ++.+|++|+.||.|++||++++ ..+..+..+. ..|.+++|+|++
T Consensus 238 ~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 238 TSRAVRTY-----HGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp TCCCCEEE-----CCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred CCcceEEE-----CCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEECCCC
Confidence 44666666 68999999999999 8899999999999999999987 5666665432 248999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
++|++|+.||.|++||+..++....+.... ..|...|++++|+|+|++|++|+.||.|++|++...+
T Consensus 311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SEEEEECTTSCEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEEECCCCEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999888776653221 2345569999999999999999999999999987543
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-43 Score=304.43 Aligned_cols=290 Identities=12% Similarity=0.098 Sum_probs=221.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCC-------cEEEEeCCCCCee----------EEEeeCCCcEEEEEECCCCcEEEEe---
Q 016458 68 GKVYSLDWTSERNRIVSASQDG-------RLIVWNALTSQKT----------HAIKLPCAWVMTCAFSPTGQSVACG--- 127 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg-------~v~iw~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~--- 127 (389)
-||+|++|+||+++|++|+.+. .|++|++..+... ..+..+...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4899999999999999987543 5999998765421 2334566677777664 5556654
Q ss_pred --------cCCCcEEEEeCCCCCCCCCCCcceee-----ecccccceEEEEEeeCCCcEEE--EeeCCCeEEEEeCCCCe
Q 016458 128 --------GLDSVCSIFNLNSPTDKDGNLPVSRM-----LSGHKGYVSCCQYVPDEDTHLI--TSSGDQTCVLWDITTGL 192 (389)
Q Consensus 128 --------~~dg~i~vw~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~ 192 (389)
+.|+.+++|++...... ...... ...+...+.+++|+|+| ++++ +++.|++|++||+.++.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQ---LEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTE---EEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE
T ss_pred CccEEEEecCCCcEEEEEecCCCce---EEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc
Confidence 45778999998764311 111111 12344568899999998 5554 45579999999999999
Q ss_pred eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccceEEEEEecCCCEEEEEecC
Q 016458 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
....+ .|...|.+++|+| +++++++++.+ .+.+|+..++.... .....|...|.+++|+|+++++++++.|
T Consensus 169 ~~~~~------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d 240 (365)
T 4h5i_A 169 EKFEI------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK 240 (365)
T ss_dssp EEEEE------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred EEEEe------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence 88877 4677899999999 88899988854 56667666553322 2334678889999999999999999988
Q ss_pred C----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 272 G----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 272 g----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
+ .++.|++........... ....+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+. .+|..+|+
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~---~gH~~~V~ 316 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK---QAHSFAIT 316 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET---TSSSSCEE
T ss_pred CcceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec---CcccCCEE
Confidence 7 688899877654322111 112234469999999999999999999999999999999988753 68999999
Q ss_pred EEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 348 CLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 348 ~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
+++|+|||++|++|+.|++|+| |++.++
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrv----w~ip~~ 344 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHI----IKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEE----EECCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEE----EEcCCC
Confidence 9999999999999999999999 999754
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-43 Score=313.73 Aligned_cols=295 Identities=12% Similarity=0.117 Sum_probs=230.1
Q ss_pred ccCcEEEEEEcCCC---------CeEEE-------------------EecCCcEEEEeCCCCCee----EEEeeCCCcEE
Q 016458 66 HAGKVYSLDWTSER---------NRIVS-------------------ASQDGRLIVWNALTSQKT----HAIKLPCAWVM 113 (389)
Q Consensus 66 h~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~ 113 (389)
+.+.|.+|+|+|++ ++||+ ++.|++|+|||+.+++.. ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57889999999976 56666 447789999999887643 34567778899
Q ss_pred EEEECCC------CcEEEEecCCCcEEEEeCCCCCCCC----CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458 114 TCAFSPT------GQSVACGGLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (389)
Q Consensus 114 ~~~~~~~------~~~l~~~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 183 (389)
+++|+|+ +.+||+++.||+|++||+..+.... ........+.+|...|.+++|+++ ..|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence 9999996 5799999999999999998653210 011123467789999999999985 479999999999
Q ss_pred EEEeCCCCe-eEEEecCcccCCCCCCeeEE--EeeCCCC-cEEEEeeCCCceEEEeCCCCCcceeEEeeecc--ceEEEE
Q 016458 184 VLWDITTGL-RTSVFGGEFQSGHTADVLSV--SISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVK 257 (389)
Q Consensus 184 ~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~ 257 (389)
++||++++. ....+ ..|...|.++ .++| ++ .+|++++.|++|++||+++. .....+.+|.. .|.+++
T Consensus 290 ~lWD~~~~~~~~~~~-----~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~ 362 (524)
T 2j04_B 290 AEFDLTDPEVPSFYD-----QVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVV 362 (524)
T ss_dssp EEEETTBCSSCSEEE-----ECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEE
T ss_pred EEEECCCCCCceEEe-----ecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceE
Confidence 999998763 33344 6899999999 4555 65 89999999999999999976 66666777754 588999
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----e--
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----K-- 330 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~-- 330 (389)
|+|+++.+++++.|+.|++||++++..+..+..+. ..|++++|+|+|++|++|+.||.|++||+... +
T Consensus 363 fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-----~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~ 437 (524)
T 2j04_B 363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-----TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS 437 (524)
T ss_dssp EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-----SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred eCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-----CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence 99999999999999999999999988777765533 35999999999999999999999999985321 0
Q ss_pred -------EEEee--------------------------cCcCCCCCCCeeEEEECCCCC---eEEeeeCCCeeEEeecce
Q 016458 331 -------VVLNL--------------------------GSLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKVNLGFW 374 (389)
Q Consensus 331 -------~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~~~~W 374 (389)
.+..+ .....+|...|.+++|+|++. .+++|+.||.|+| |
T Consensus 438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl----w 513 (524)
T 2j04_B 438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL----E 513 (524)
T ss_dssp ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE----E
T ss_pred ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE----E
Confidence 11011 011145888999999999954 9999999999999 9
Q ss_pred eccc
Q 016458 375 RVQE 378 (389)
Q Consensus 375 ~~~~ 378 (389)
++.-
T Consensus 514 ~l~~ 517 (524)
T 2j04_B 514 YLSL 517 (524)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 9864
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-41 Score=301.65 Aligned_cols=302 Identities=19% Similarity=0.264 Sum_probs=259.0
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC--CCC
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS--PTG 121 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 121 (389)
+.+.....|+....+....+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+..|...|.+++|+ +++
T Consensus 139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC
T ss_pred cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC
Confidence 345667788889999999999999999999999988 99999999999999999999999999999999999998 578
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCC----------------CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDG----------------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
.++++|+.||.|++||+........ .......+.+|...+.++ ++++ .++++++.||.|++
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIV 294 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEE
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEE
Confidence 9999999999999999987542111 011255677888888887 4555 68999999999999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
||+.+++....+ ..|...|.+++|+| +++++++|+.||.|++||++++ ..+..+.+|...|.+++|+ +.+|
T Consensus 295 wd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l 365 (464)
T 3v7d_B 295 WDVAQMKCLYIL-----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFL 365 (464)
T ss_dssp EETTTTEEEEEE-----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEE
T ss_pred EECCCCcEEEEe-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEE
Confidence 999999999888 78999999999999 8889999999999999999987 7888999999999999997 5799
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (389)
++++.||.|++||++++.......... .+..++|+++++++++|+ ||.|++||+.+++.+.... ..|...
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~---~~~~~~ 435 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSYHHTN------LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI---LKDADQ 435 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECTT------CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT---TTTCSE
T ss_pred EEEeCCCcEEEEECCCCceeeeecCCC------CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh---ccCCCc
Confidence 999999999999999887665553222 377889999999999998 8999999999999987643 678899
Q ss_pred eeEEEECCCCCeEEeeeCCCeeEE
Q 016458 346 ITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 346 v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
|.+++|+ +..++++++.||.+.+
T Consensus 436 v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 436 IWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEEEec-CCEEEEEEEeCCeEEE
Confidence 9999997 4445566667777666
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-43 Score=311.27 Aligned_cols=283 Identities=19% Similarity=0.278 Sum_probs=239.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.+++++|+|++++|++++.||.|++||+.+++....+..+ ..+....|++++++|++|+.||.|++||+..+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------ 130 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------ 130 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence 3558999999999999999999999999887766555555 445556789999999999999999999998644
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+ ..|...|.+++|+| ++.+|++++.|
T Consensus 131 -~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~~~d 202 (420)
T 3vl1_A 131 -QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIID-RGRNVLSASLD 202 (420)
T ss_dssp -EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred -eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcC-CCCEEEEEcCC
Confidence 556667999999999999997 68999999999999999999888888 68999999999999 88899999999
Q ss_pred CceEEEeCCCCCcceeEEee---eccce---------------------EEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 229 STARLWDTRVASRAVRTFHG---HEGDV---------------------NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~---~~~~i---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
|.|++||+++. +.+..+.. |...+ .+++|+|++++|++++.||.|++||+++++.
T Consensus 203 ~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 203 GTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp SCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 99999999987 66666664 33344 4455578899999999999999999999887
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
...+... +...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+. ..|...|.++.+ +++++|++++
T Consensus 282 ~~~~~~~----~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 282 TIQLPSK----FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp EEEECCT----TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEE-ETTEEEEEET
T ss_pred eEEcccc----cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEe-CCCCEEEEec
Confidence 7776543 233699999999999 999999999999999998743 55552 347778888866 4788999999
Q ss_pred CCCeeEEeecceecccC
Q 016458 363 WDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~ 379 (389)
.||.|++ |++..+
T Consensus 354 ~d~~v~i----w~~~~~ 366 (420)
T 3vl1_A 354 FDTSIKL----DIISDP 366 (420)
T ss_dssp TTEEEEE----EEECCT
T ss_pred CCccEEE----EeccCC
Confidence 9999999 999874
No 58
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=293.81 Aligned_cols=297 Identities=16% Similarity=0.205 Sum_probs=244.4
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCC---CCeEEEEecCCcEEEEeCCC-CCee-EEEeeCCCcEEEEEECCCCcEEE
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALT-SQKT-HAIKLPCAWVMTCAFSPTGQSVA 125 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 125 (389)
.+...+......+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3445566788899999999999999999 59999999999999999987 5554 67888999999999999999999
Q ss_pred EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE--eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY--VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 126 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
+++.||.|++||+.++. ......|...|.+++| ++++ .+|++++.||.|++||+++++....+ .
T Consensus 103 s~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQ--------AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL-----Q 168 (368)
T ss_dssp EEETTSEEEEEETTTTE--------EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE-----E
T ss_pred EEcCCCcEEEEEcCCCC--------ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE-----e
Confidence 99999999999998754 3346679999999999 7776 78999999999999999999888877 2
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCE----EEEEecCCeEEEEE
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR----FGTGSDDGTCRLFD 278 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d 278 (389)
. ...+.++.+.+ ..+++++.++.+.+||++.......... .+...+.++++.++... +++++.||.|++||
T Consensus 169 ~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 169 L-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp C-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred c-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 3 34677777764 4788888999999999987643333322 23445677777766554 99999999999999
Q ss_pred CCCCc---eeeEeeccCC-------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 279 IRTGH---QLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 279 ~~~~~---~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
++... ....+..+.. ..+...|++++|+|++++|++++.||.|++||+.+++.+..+ ..|..+|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~ 320 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISA 320 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceE
Confidence 99873 3444433221 011125999999999999999999999999999999999988 789999999
Q ss_pred EEECCCCCeEEeeeCCCeeEE
Q 016458 349 LGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~i~i 369 (389)
++|+|+|++|++++.|+..+.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTC
T ss_pred EEECCCCCeEEEEeccccccc
Confidence 999999999999999987766
No 59
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=281.83 Aligned_cols=279 Identities=22% Similarity=0.403 Sum_probs=236.8
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
+++|+||+++ +||+| .|++|+|||+.+++.+..+. .|...|.+++|+|++++|++|+.||.|++|++.+++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----- 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----- 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence 5789999986 77766 58999999999999888776 466789999999999999999999999999998765
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
....+.+|...+.++.+.+ ..+++++.++.+++|+...... ...+ ..|...+..+.+.+ .++++++++
T Consensus 101 --~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 101 --RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-----SGHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp --EEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCEEEEEECT-TSSEEEEEE
T ss_pred --eEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEE-----cCccCceEEEEEcC-CCCEEEEEe
Confidence 6777889998888766553 6899999999999999987644 3444 68899999999998 888999999
Q ss_pred CCCceEEEeCCCCC---cceeEEeeeccceEEEEEecCCCEE---EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 227 CDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPDGNRF---GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 227 ~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
.||.|++||+++.. ........+.+.|.+++++|++..+ ++++.++.|++||.............. .+
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~------~v 243 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------QV 243 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS------CE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee------ee
Confidence 99999999998753 2345566788899999999966533 466788999999999887766554332 38
Q ss_pred eEEEeCCCCCEEEEEe--cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 301 TSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..+.|+|+++.+++++ .|+.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.||+|+| ||+.+
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~i----Wd~~~ 315 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRL----WRCFE 315 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEE----ECCSC
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE----EECCC
Confidence 9999999999887654 7999999999999999999 799999999999999999999999999999 99976
Q ss_pred Cc
Q 016458 379 GA 380 (389)
Q Consensus 379 ~~ 380 (389)
..
T Consensus 316 ~d 317 (318)
T 4ggc_A 316 LD 317 (318)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-41 Score=299.25 Aligned_cols=281 Identities=25% Similarity=0.429 Sum_probs=243.4
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.....+|...|+|++| ++++|++|+.||.|++||+.+++....+..|...|.+++| ++++|++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3344567788999987 6889999999999999999999999999999999999999 78899999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
++. ....+.+|...|.++.|++ .++++|+.||.|++||+.++... ..+ ..|...|.++++
T Consensus 202 ~~~-------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~-- 264 (435)
T 1p22_A 202 TGE-------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVL-----VGHRAAVNVVDF-- 264 (435)
T ss_dssp SCC-------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEE-----CCCSSCEEEEEE--
T ss_pred CCc-------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEe-----cCCCCcEEEEEe--
Confidence 755 6778889999999999974 58999999999999999987655 344 688999999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCC
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 296 (389)
+++++++|+.||.|++||+++. ..+..+.+|...|.+++|+ +.++++|+.||.|++||+++++.+..+..+.
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---- 336 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE---- 336 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS----
T ss_pred -CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc----
Confidence 4578999999999999999987 7888899999999999994 6799999999999999999998888775543
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce---------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee
Q 016458 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 367 (389)
..|.+++| ++.+|++|+.||.|++||+.++. .+..+ .+|.+.|++++| ++.+|++++.||.|
T Consensus 337 -~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 -ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp -SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred -CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 35999998 78899999999999999998766 67777 789999999999 68899999999999
Q ss_pred EEeecceecccCccc
Q 016458 368 KVNLGFWRVQEGALS 382 (389)
Q Consensus 368 ~i~~~~W~~~~~~~~ 382 (389)
++ ||+.++...
T Consensus 408 ~i----wd~~~~~~~ 418 (435)
T 1p22_A 408 LI----WDFLNDPAA 418 (435)
T ss_dssp EE----EC-------
T ss_pred EE----EECCCCCCc
Confidence 99 999887543
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=303.56 Aligned_cols=300 Identities=12% Similarity=0.175 Sum_probs=232.9
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----------eeEEEeeCC------------CcEEEEEECCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-----------KTHAIKLPC------------AWVMTCAFSPTG 121 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 121 (389)
.|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+..|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998877 477888887 889999999998
Q ss_pred --cEEEEecCCCcEEEEeCCCCCCC--------------------CCCCc------------ce-eeecccccceEEEEE
Q 016458 122 --QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLP------------VS-RMLSGHKGYVSCCQY 166 (389)
Q Consensus 122 --~~l~~~~~dg~i~vw~~~~~~~~--------------------~~~~~------------~~-~~~~~~~~~v~~~~~ 166 (389)
..|++++.|+.|++|++...... ....+ .. ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998752210 00000 00 123679999999999
Q ss_pred eeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEec--CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-
Q 016458 167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA- 242 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 242 (389)
+|++ .+|++| .|+.|++||+.+. .....+. ......|...|.+++|+|.+.++|++++.||.|++||+++. ..
T Consensus 186 ~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~ 262 (447)
T 3dw8_B 186 NSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALC 262 (447)
T ss_dssp CTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSS
T ss_pred cCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-ccc
Confidence 9987 688888 7999999999843 3333221 11125788999999999943489999999999999999987 43
Q ss_pred ---eeEEeeecc------------ceEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCC----------C
Q 016458 243 ---VRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGEN----------E 296 (389)
Q Consensus 243 ---~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~----------~ 296 (389)
...+..|.. .|.+++|+|++++|++++. +.|++||++. ++.+..+..+.... .
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 677887776 8999999999999999999 9999999997 77766665442110 0
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc----------------------------CCCCCCCeeE
Q 016458 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----------------------------QNSHEGRITC 348 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~v~~ 348 (389)
...+..++|+|++++|++|+.||.|++||+.+++.+...... ...+...|.+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 001334999999999999999999999999988775421100 0134567999
Q ss_pred EEECCCCCeEEeeeCCCeeEE
Q 016458 349 LGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~dg~i~i 369 (389)
++|+|++.+|++++.++ +++
T Consensus 422 ~~~~p~~~~la~~~~~~-~~~ 441 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN-LYI 441 (447)
T ss_dssp EEECSSSSEEEEECSSC-EEE
T ss_pred EEECCCCCEEEEEecce-eee
Confidence 99999999999998876 666
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-41 Score=336.91 Aligned_cols=294 Identities=26% Similarity=0.351 Sum_probs=264.2
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
.++. ....+.+|...|.+++|+|++ ..++++|+.||.|++||+.++.....+ .+|...|.+++|+|
T Consensus 687 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~sp- 753 (1249)
T 3sfz_A 687 ATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSP- 753 (1249)
T ss_dssp TTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEECS-
T ss_pred CCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEec-
Confidence 8765 677888999999999999963 357889999999999999999999888 78999999999999
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEee-------------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
+++++++++.||.|++||+++. .....+.. +...+.+++|+|+++.+++++ ++.+.+||+.++..
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL 831 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE
T ss_pred CCCEEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCc
Confidence 8889999999999999999876 44333321 233688999999999999887 68999999999988
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
...+...+ ...+.+++|+|+++++++++.||.|++||+.++.....+ .+|...|++++|+|++++|++++.|
T Consensus 832 ~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 832 LAEIHTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEEECSS----SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEcCCC----CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCC
Confidence 87775433 336999999999999999999999999999999999988 7999999999999999999999999
Q ss_pred CeeEEeecceecccC
Q 016458 365 TNLKVNLGFWRVQEG 379 (389)
Q Consensus 365 g~i~i~~~~W~~~~~ 379 (389)
|.|++ |++.++
T Consensus 904 g~v~v----w~~~~~ 914 (1249)
T 3sfz_A 904 QTIRV----WETKKV 914 (1249)
T ss_dssp SCEEE----EEHHHH
T ss_pred CeEEE----EEcccc
Confidence 99999 998754
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=290.52 Aligned_cols=282 Identities=18% Similarity=0.267 Sum_probs=223.7
Q ss_pred ccCCCCCcccCCCccee---eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEE
Q 016458 43 RSQGRAPVSFGPTDLVC---CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAF 117 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~ 117 (389)
...+.....|+...... .....+|.+.|.+++|+|++++|++|+.|++|++|+...+. .+..+..|...|.+++|
T Consensus 34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~ 113 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW 113 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEE
T ss_pred EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEE
Confidence 34455666776654432 22347899999999999999999999999999999988764 46778889999999999
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee--EE
Q 016458 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TS 195 (389)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 195 (389)
+|++++|++|+.|+.|++||+.... .......+.+|...|.+++|+|++ .+|++++.|+.|++||..++.. ..
T Consensus 114 sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 114 APSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 9999999999999999999998643 223456778899999999999997 6899999999999999988753 34
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--------------cceeEEee-eccceEEEEEec
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RAVRTFHG-HEGDVNTVKFFP 260 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~-~~~~i~~~~~~~ 260 (389)
.+ .+|...|.+++|+| ++++|++++.|+.|++||..... ..+..+.+ |...|.+++|+|
T Consensus 189 ~~-----~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 189 TL-----EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT
T ss_pred Ee-----cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec
Confidence 55 68999999999999 88999999999999999974321 11223333 788999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCce----eeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEee
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
++..|++++.|+.|++|+...... ...+.......|...|++++|+|++. +|++|+.||.|++|++.+++.+...
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 999999999999999999876431 11122222234556799999999984 9999999999999999888766544
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.9e-41 Score=296.35 Aligned_cols=304 Identities=26% Similarity=0.414 Sum_probs=266.4
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
...+.....|+....++...+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+..+..|...|.+++|+ ++
T Consensus 135 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp EETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred EECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence 3445667788888999999999999999999998 4599999999999999999999999999999999999995 67
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 202 (389)
.+++|+.||.|++||+.++. ....+.+|...|.++.| ++ .++++++.||.|++||+.++.....+
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~----- 275 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQ-------CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTL----- 275 (445)
T ss_dssp EEEEEETTSEEEEEESSSCC-------EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEE-----
T ss_pred EEEEEeCCCEEEEEECCCCc-------EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEe-----
Confidence 89999999999999998754 56778899999999999 43 68999999999999999999999888
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
..|...|.++.+ ++.++++++.||.|++||+++. +.+..+.+|...+.++.++ ++++++++.||.|++||++++
T Consensus 276 ~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 276 QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC
Confidence 688999999999 5678999999999999999987 7888889999999888874 679999999999999999999
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc-CCCCCCCeeEEEECCCCCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
+.+..+.... .+...|++++|+ +++|++|+.||.|++||+.+++.+..+... ...|.+.|.+++|+|++.++++|
T Consensus 350 ~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 350 QCLQTLQGPN--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp CEEEEECSTT--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred cEEEEEccCC--CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 8887775422 234469999995 679999999999999999999888777311 14678899999999999999999
Q ss_pred eCCCe----eEEeecceecccC
Q 016458 362 SWDTN----LKVNLGFWRVQEG 379 (389)
Q Consensus 362 ~~dg~----i~i~~~~W~~~~~ 379 (389)
+.||. +.| ||+...
T Consensus 426 ~~dg~~~~~l~v----~df~~~ 443 (445)
T 2ovr_B 426 SRNGTEETKLLV----LDFDVD 443 (445)
T ss_dssp CSSSSSCCEEEE----EECCCC
T ss_pred ccCCCCccEEEE----EECCCC
Confidence 99998 888 998753
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4e-41 Score=298.56 Aligned_cols=289 Identities=27% Similarity=0.484 Sum_probs=252.8
Q ss_pred CcceeeeecccccCcE-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcE
Q 016458 55 TDLVCCRTLQGHAGKV-YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (389)
Q Consensus 55 ~~~~~~~~l~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 133 (389)
......+.+.+|.+.| .|+.+ ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+ ++++++|+.||.|
T Consensus 106 ~~~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 106 GELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp SCCCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCcceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 3445667899999975 66555 67899999999999999999999999999999999999997 6799999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++||+.++. ....+.+|...|.++.|++ ..+++|+.||.|++||+.+++....+ ..|...+.++.
T Consensus 182 ~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~ 246 (445)
T 2ovr_B 182 KVWNAETGE-------CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQ 246 (445)
T ss_dssp EEEETTTTE-------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEE-----ECCSSCEEEEE
T ss_pred EEEECCcCc-------EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEE-----cCCcccEEEEE
Confidence 999998754 6677889999999999963 57999999999999999999998888 68999999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 293 (389)
+ +++++++++.||.|++||+++. ..+..+.+|...|.+++| ++.++++++.||.|++||+++++....+..+..
T Consensus 247 ~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 320 (445)
T 2ovr_B 247 Y---DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320 (445)
T ss_dssp E---CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred E---CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence 8 4578999999999999999987 788888999999999999 788999999999999999999998887754433
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecc
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGF 373 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~ 373 (389)
.+.++.+ +++++++|+.||.|++||+.+++.+..+... ..|...|++++|+ +.+|++|+.||.|++
T Consensus 321 -----~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~v~i---- 386 (445)
T 2ovr_B 321 -----LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFN--KNFVITSSDDGTVKL---- 386 (445)
T ss_dssp -----CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEEC--SSEEEEEETTSEEEE----
T ss_pred -----cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEEC--CCEEEEEeCCCeEEE----
Confidence 4777776 5679999999999999999999998888421 2488999999996 579999999999999
Q ss_pred eecccCccc
Q 016458 374 WRVQEGALS 382 (389)
Q Consensus 374 W~~~~~~~~ 382 (389)
|++.+++..
T Consensus 387 wd~~~~~~~ 395 (445)
T 2ovr_B 387 WDLKTGEFI 395 (445)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcee
Confidence 999998764
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-41 Score=289.12 Aligned_cols=275 Identities=21% Similarity=0.323 Sum_probs=223.4
Q ss_pred cccCCCCCcccCCCc-------ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEE
Q 016458 42 SRSQGRAPVSFGPTD-------LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMT 114 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~ 114 (389)
+.+.+.....|+... ..+...+.+|...|++++|+|++.+|++|+.|++|++||+.+++.+..+..|...|.+
T Consensus 44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 123 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS 123 (343)
T ss_dssp EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence 445556667776542 3567789999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC---------cEEEEeeCCCeEEE
Q 016458 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED---------THLITSSGDQTCVL 185 (389)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~i 185 (389)
++|+|++++|++++.|+.|++||+.... .........|...|.+++|+|++. .++++++.||.|++
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 9999999999999999999999997421 001111237889999999999762 58999999999999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
||. .......+ ..|...|.+++|+| ++++|++|+.||.|++||++........+ .+...|.+++|+|++.++
T Consensus 199 wd~-~~~~~~~~-----~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l 270 (343)
T 2xzm_R 199 WNT-NFQIRYTF-----KAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWV 270 (343)
T ss_dssp EET-TTEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEE
T ss_pred EcC-CCceeEEE-----cCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEE
Confidence 994 45555566 68999999999999 88999999999999999996553444444 356679999999999877
Q ss_pred EEEecCCeEEEEECCCCceee--EeeccC------CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQ--VYYQQH------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~--~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
++ +.|+.|++||+.+++... .+.... ...+...+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 271 a~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 271 AV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 65 568889999998876544 222100 01344569999999999999999999999999987653
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.8e-42 Score=295.32 Aligned_cols=309 Identities=13% Similarity=0.175 Sum_probs=231.4
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC----eeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcE
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVC 133 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 133 (389)
.+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++. ....+..|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34678999999999999999999999999999999998763 5666788999999999999 69999999999999
Q ss_pred EEEeCCCCCCCC--CCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCeeEEEec--------Ccc
Q 016458 134 SIFNLNSPTDKD--GNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFG--------GEF 201 (389)
Q Consensus 134 ~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~ 201 (389)
++||+..+.... ........+..|...|.+++|+|+ + .++++++.||.|++||+.++.....+. ...
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999998754211 112346677889999999999998 6 789999999999999998876433221 011
Q ss_pred cCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccceEEEEEecCC----CEEEEEecCCeE
Q 016458 202 QSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTC 274 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i 274 (389)
...+...+.+++|+|. ++.++++++.++.+.+|+...... .+..+.+|...|.+++|+|++ ++|++++.||.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 1367788999999994 388999999999998888776521 266677899999999999998 899999999999
Q ss_pred EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE----ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (389)
++||++.+........... .......++....+..+ .....+.+|+....+.+..+ .+|...|++++
T Consensus 243 ~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~ 313 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH----DDHNGEVWSVS 313 (351)
T ss_dssp EEEEEEECC--------------------------------------------CCSEEEEEEEEE----CTTSSCEEEEE
T ss_pred EEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEE----ecccccEEEEE
Confidence 9999987655443322211 13333344444344333 33445677777777888888 78999999999
Q ss_pred ECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 351 LSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
|+|++++|++++.||.|++ |++.+++..
T Consensus 314 ~s~~~~~l~s~~~dg~v~i----w~~~~~~~~ 341 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRL----WKATYSNEF 341 (351)
T ss_dssp ECSSSCCEEEEETTSCEEE----EEECTTSCE
T ss_pred EcCCCCEEEEecCCCcEEE----EecCcCcch
Confidence 9999999999999999999 999987543
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-41 Score=311.82 Aligned_cols=306 Identities=12% Similarity=0.188 Sum_probs=248.6
Q ss_pred ccCCCCCcccCCCcceeeeecccccC---cEEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCeeEEE-e---eCCCcEEE
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAI-K---LPCAWVMT 114 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~-~---~~~~~v~~ 114 (389)
...+.....|+....++...+.+|.+ .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ . .|...|.+
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 34455667888888999999999999 9999999999 999999999999999999999999998 6 88899999
Q ss_pred EEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc----ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 115 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
++|+ ++++|++++.||.|++||+.++. ....+..+ ...+.++.|. ++ .++++++.||.|++||+.+
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCc-------EEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCC
Confidence 9999 99999999999999999998754 44445444 4678888886 44 6899999999999999998
Q ss_pred CeeEEEecCcccCCCCCC---------------------------------eeEEEeeCCCCcEEEEe------------
Q 016458 191 GLRTSVFGGEFQSGHTAD---------------------------------VLSVSISGSNSRMFVSG------------ 225 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~---------------------------------v~~~~~~~~~~~~l~~~------------ 225 (389)
+.....+ ..|... |.+++|. .+..++++
T Consensus 329 ~~~~~~~-----~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 329 DEVLKTI-----SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp EEEEEEE-----CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC--STTCCEEEETTTEEEETTEE
T ss_pred CcEEEEE-----eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC--CCcEEEEEeCCCCEEEEEcc
Confidence 7776666 334333 3444441 13334444
Q ss_pred -------------------------------------------------------------eC-CCceEEEeCCCCCcce
Q 016458 226 -------------------------------------------------------------SC-DSTARLWDTRVASRAV 243 (389)
Q Consensus 226 -------------------------------------------------------------~~-dg~i~i~d~~~~~~~~ 243 (389)
+. |+.|++||+... ...
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~~ 480 (615)
T 1pgu_A 402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVS 480 (615)
T ss_dssp EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEE
T ss_pred cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-ccc
Confidence 44 455555554433 111
Q ss_pred -eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC----------CCCEE
Q 016458 244 -RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI----------SGRLL 312 (389)
Q Consensus 244 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l 312 (389)
..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+... +...|++++|+| ++++|
T Consensus 481 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~~~~~~~~l 556 (615)
T 1pgu_A 481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEKGANEEEIEEDLV 556 (615)
T ss_dssp EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC------CCSCCEE
T ss_pred ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----CCCceeEEEEcCccccccccccCCCEE
Confidence 344568889999999999999999999999999999998887765431 334699999999 99999
Q ss_pred EEEecCCcEEEEEcccc-eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 313 FAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 313 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++++.||.|++||+.++ +.+..+ .+|...|++++|+|+++ |++++.||.|++ |+++.+
T Consensus 557 ~~~~~dg~i~iw~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i----w~~~~~ 615 (615)
T 1pgu_A 557 ATGSLDTNIFIYSVKRPMKIIKAL----NAHKDGVNNLLWETPST-LVSSGADACIKR----WNVVLE 615 (615)
T ss_dssp EEEETTSCEEEEESSCTTCCEEET----TSSTTCEEEEEEEETTE-EEEEETTSCEEE----EEEC--
T ss_pred EEEcCCCcEEEEECCCCceechhh----hcCccceEEEEEcCCCC-eEEecCCceEEE----EeeecC
Confidence 99999999999999987 677777 78999999999999999 999999999999 999763
No 69
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=320.36 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=154.9
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
...+.....|+.....+...+ .|..+|.+++|+| +++|++++.|++|++||+.+++.+..+. +...|++++|+|+++
T Consensus 35 gs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 35 ATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD 111 (902)
T ss_dssp EETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred EeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence 344556677887777666655 4788999999999 8899999999999999999999988886 557899999999999
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCC---cce-eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNL---PVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~---~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
+|++|+.||.|++||+.......... ... ....+|.+.|.+++|+|++...+++|+.||.| +||+++++....+.
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~ 190 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI 190 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence 99999999999999998743100000 000 23467899999999999755789999999999 99999998887774
Q ss_pred Cc-------------ccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCC
Q 016458 199 GE-------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (389)
Q Consensus 199 ~~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 239 (389)
.. ....|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus 191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp CCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTC
T ss_pred cccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Confidence 22 0112357799999999 7899999999999999998654
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.1e-41 Score=282.26 Aligned_cols=256 Identities=25% Similarity=0.447 Sum_probs=226.6
Q ss_pred CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 179 (389)
.....+.+|...|.+++|+|++++|++++.||.|++|++..+. ....+.+|...|.+++|+|++ ++|++++.
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 85 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDS-NLLVSASD 85 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCC-CEEEEECC
Confidence 4456678899999999999999999999999999999997754 567788999999999999997 78999999
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEe
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 259 (389)
|+.|++||+.+++....+ ..|...|.+++|+| ++++|++++.|+.|++||+++. +.+..+..|..+|.+++|+
T Consensus 86 d~~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTL-----KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEc
Confidence 999999999999988888 68999999999999 8899999999999999999987 7788889999999999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (389)
|++++|++++.||.|++||+++++.+..+.... ...+..++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---- 230 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD----NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY---- 230 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSS----CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccC----CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----
Confidence 999999999999999999999988777664332 235899999999999999999999999999999998888
Q ss_pred CCCCCCe---eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 340 NSHEGRI---TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 340 ~~~~~~v---~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.+|...+ ......+++.+|++|+.||.|++ ||+.++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v----wd~~~~~~~ 272 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI----WNLQTKEIV 272 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE----EETTTCCEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEE----EECCCchhh
Confidence 5565543 23333468899999999999999 999988764
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6e-41 Score=309.76 Aligned_cols=297 Identities=15% Similarity=0.238 Sum_probs=252.7
Q ss_pred CCCcccCCCcc----eeeeecccccCc-EEEEEEcC--CCCeEEEEecCCcEEEEeCCCC--------CeeEEEeeCCCc
Q 016458 47 RAPVSFGPTDL----VCCRTLQGHAGK-VYSLDWTS--ERNRIVSASQDGRLIVWNALTS--------QKTHAIKLPCAW 111 (389)
Q Consensus 47 ~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~ 111 (389)
.....|+.... .....+.+|.+. |++++|+| ++++|++++.||.|++||+.++ .....+..|...
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 34556777776 788899999999 99999999 9999999999999999999754 667778889999
Q ss_pred EEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 112 VMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
|.+++|+|++++|++++.+ +.|.+||... ....+.+|...|.+++|+|+++.++++++.|+.|++||
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd 189 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 189 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEe
Confidence 9999999999999999987 6888888433 56778899999999999999865899999999999999
Q ss_pred CCCCeeEEEecCcccCCCCC---CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-e---eeccceEEEEEec
Q 016458 188 ITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-H---GHEGDVNTVKFFP 260 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~i~~~~~~~ 260 (389)
+.+++....+ ..|.. .|.+++|+|.++++|++++.||.|++||+++. +.+..+ . .|...|.+++|+
T Consensus 190 ~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 190 GPPFKFSASD-----RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp TTTBEEEEEE-----CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-
T ss_pred CCCcceeeee-----cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-
Confidence 9999998888 67888 99999999932899999999999999999987 677777 5 899999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (389)
Q Consensus 261 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (389)
++.+|++++.||.|++||+++++....+.... ......+.++.|+ +++++++++.||.|++||+.+++.+..+ .
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~----~ 336 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI----S 336 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----C
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----e
Confidence 99999999999999999999998887776542 1222347888885 8999999999999999999998888887 5
Q ss_pred CCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 341 SHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.|...|++++| |+ |++++.||.|++
T Consensus 337 ~~~~~v~~~~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 337 GHNKGITALTV-NP---LISGSYDGRIME 361 (615)
T ss_dssp CCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred CCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence 67777777776 55 444444444444
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.1e-41 Score=279.80 Aligned_cols=254 Identities=18% Similarity=0.260 Sum_probs=210.2
Q ss_pred EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCC
Q 016458 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQ 181 (389)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 181 (389)
..+.+|...|.+++|+|+|++|++|+.|+.|++|++.... ......+.+|.++|.+++|+++ .+.+|++|+.|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 3466889999999999999999999999999999997532 1256788999999999999864 237899999999
Q ss_pred eEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCc-ceeEEeeeccceEEEE
Q 016458 182 TCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVK 257 (389)
Q Consensus 182 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~ 257 (389)
+|++||+.++. ....+ ..|...|.+++|+|.. +.+|++++.|+.|++||++.... ....+.+|...|.+++
T Consensus 78 ~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998874 34444 5788999999999942 78999999999999999987532 2456788999999999
Q ss_pred EecC-------------CCEEEEEecCCeEEEEECCCCce----eeEeeccCCCCCCCCeeEEEeCCCC---CEEEEEec
Q 016458 258 FFPD-------------GNRFGTGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYS 317 (389)
Q Consensus 258 ~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~ 317 (389)
|+|+ +++|++|+.|+.|++||++++.. ...+. .|...|.+++|+|++ ++|++++.
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-----~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-----GHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-----CCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-----CCCCceEEEEECCCCCCceEEEEEEC
Confidence 9996 57999999999999999987662 23332 244469999999985 89999999
Q ss_pred CCcEEEEEcccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 318 NGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 318 dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
|+.|++||+.... ....+. ...|...|.+++|+|+|++|++++.||.|++ |+..
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~l----w~~~ 284 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKEN 284 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEE----EEEC
T ss_pred CCcEEEEEeCCCCCccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEE----EEEC
Confidence 9999999987642 111221 1467889999999999999999999999999 9986
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-41 Score=287.53 Aligned_cols=255 Identities=18% Similarity=0.237 Sum_probs=205.3
Q ss_pred eecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECC--CCcEEEEecCCCcEEEE
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 136 (389)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|+.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999998775 4667889999999999986 48999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
|+.++. ......+.+|...|.+++|+|+. ..+|++|+.|+.|++||+..+...... .....|...+.+++|+
T Consensus 87 d~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 87 REENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWA 159 (316)
T ss_dssp CCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEEC
T ss_pred ECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEc
Confidence 997632 22456678899999999999983 368999999999999999876432111 1115788899999999
Q ss_pred CCC----------------CcEEEEeeCCCceEEEeCCCCC--cceeEEeeeccceEEEEEecCC----CEEEEEecCCe
Q 016458 216 GSN----------------SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGT 273 (389)
Q Consensus 216 ~~~----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~ 273 (389)
|.. +.+|++|+.|+.|++||++... .....+.+|...|.+++|+|++ .+|++++.||.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 842 3689999999999999997542 3456678899999999999986 88999999999
Q ss_pred EEEEECCCCc----eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 274 CRLFDIRTGH----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 274 i~i~d~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
|++||+.+.. ....+.. +...|.+++|+|++++|++++.||.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987631 1122222 23359999999999999999999999999975
No 74
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-40 Score=288.17 Aligned_cols=266 Identities=19% Similarity=0.311 Sum_probs=220.4
Q ss_pred cccCCCcceeeeecccccC------------------cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc
Q 016458 50 VSFGPTDLVCCRTLQGHAG------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW 111 (389)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~------------------~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 111 (389)
..|+.........+.+|.. .|.+++|+|++++|++|+.|++|++||+.+++.+..+..|...
T Consensus 88 ~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 167 (393)
T 1erj_A 88 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 167 (393)
T ss_dssp EEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC
Confidence 3455555555666665542 4999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
|.+++|+|++++|++++.|+.|++||+.++. ....+ .+...+.+++|+|..+.++++|+.|+.|++||+.++
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCe-------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999999999999998744 23333 356789999999944489999999999999999998
Q ss_pred eeEEEecCcc--cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC-----------cceeEEeeeccceEEEEE
Q 016458 192 LRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------RAVRTFHGHEGDVNTVKF 258 (389)
Q Consensus 192 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~~~~ 258 (389)
.....+.... ..+|...|.+++|+| ++.+|++++.|+.|++||++... .....+.+|...|.+++|
T Consensus 240 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 318 (393)
T 1erj_A 240 FLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318 (393)
T ss_dssp CEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred cEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence 8776653221 146889999999999 88999999999999999997531 234567789999999999
Q ss_pred ecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC------CCCEEEEEecCCcEEEEEcccc
Q 016458 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------SGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 259 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
+|++.+|++|+.||.|++||+.+++.+..+..+.. .|.+++|++ ++++|++|+.||.|++|++...
T Consensus 319 ~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-----CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999999999999999998877765443 599999876 6889999999999999998643
No 75
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=288.51 Aligned_cols=260 Identities=17% Similarity=0.224 Sum_probs=220.3
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcE
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVC 133 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 133 (389)
.+...+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+..|...|.+++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3556889999999999999999999999999999999998 55677788889999999999987 9999999999999
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCe
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADV 209 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v 209 (389)
++||+..+. ......+..|...|.+++|+|+ + .++++++.|+.|++||+.++.. ...+ ..|...|
T Consensus 82 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~~~v 150 (379)
T 3jrp_A 82 LIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGV 150 (379)
T ss_dssp EEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEE-----ECCTTCE
T ss_pred EEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEe-----cCCCCce
Confidence 999998742 2245667789999999999998 6 7899999999999999998733 2333 5788999
Q ss_pred eEEEeeCC------------CCcEEEEeeCCCceEEEeCCCCCc---ceeEEeeeccceEEEEEecC---CCEEEEEecC
Q 016458 210 LSVSISGS------------NSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDD 271 (389)
Q Consensus 210 ~~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d 271 (389)
.+++|+|. ++.++++++.||.|++||++.... ....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 99999995 588999999999999999986632 34567789999999999999 8999999999
Q ss_pred CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
|.|++||++++.............+...+.+++|+|++++|++++.||.|++|++..
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999875333332222233455699999999999999999999999999874
No 76
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-40 Score=277.67 Aligned_cols=256 Identities=19% Similarity=0.273 Sum_probs=207.6
Q ss_pred CCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-cc-cccceEEEEEeeCCCcEEE
Q 016458 98 TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SG-HKGYVSCCQYVPDEDTHLI 175 (389)
Q Consensus 98 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~ 175 (389)
+.+.+..+.+|..+|.+++|+|+ +|++|+.|+.|++|++..+. ......+ .. |...|.+++|+|++ .+|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~~-~~la 74 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPHT-SLLA 74 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTTS-SEEE
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCCC-CEEE
Confidence 45567788999999999999987 99999999999999997632 1233344 34 99999999999997 7899
Q ss_pred EeeCCCeEEEEeCCC-------CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---cceeE
Q 016458 176 TSSGDQTCVLWDITT-------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRT 245 (389)
Q Consensus 176 ~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~ 245 (389)
+++.|+.|++||+.. ......+ .+|...|.+++|+| ++++|++++.|+.|++||++... +.+..
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAII-----EGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEE-----C----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEE-----cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 999999999999853 2344555 68999999999999 88999999999999999995432 35667
Q ss_pred EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCC--ceeeEeeccCCCCCCCCeeEEEeCCC--CCEEEEEecCCcE
Q 016458 246 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDC 321 (389)
Q Consensus 246 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i 321 (389)
+.+|...|.+++|+|++.+|++++.|+.|++||..++ +.+..+.. +...|.+++|+|+ +.+|++|+.|+.|
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-----HEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-----CSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-----CCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 8899999999999999999999999999999998766 34444433 3345999999998 6799999999999
Q ss_pred EEEEcccc--------eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 322 YVWDTLLA--------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 322 ~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
++||+..+ .....+. ..|...|.+++|++++ +|++++.||.|++ |+..+++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i----w~~~~~~ 282 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILP---DVHKRQVYNVAWGFNG-LIASVGADGVLAV----YEEVDGE 282 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECC---SCCSSCEEEEEECTTS-CEEEEETTSCEEE----EEEETTE
T ss_pred EEEEecCCCccccceeEEeeecc---cccccceEEEEEcCCC-EEEEEeCCCEEEE----EEcCCCc
Confidence 99998764 3333331 3489999999999765 8999999999999 9998773
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=314.89 Aligned_cols=212 Identities=12% Similarity=0.126 Sum_probs=179.3
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|+.|++||+.++.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 4589999999999999999999999999999998877665544 3677899999999 8899999999999999998754
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec-C-----cccCCCCCCeeEEEeeC
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG-G-----EFQSGHTADVLSVSISG 216 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~~ 216 (389)
....+. |...|++++|+|++ .++++|+.||.|++||+.++....... . .....|...|.+++|+|
T Consensus 91 -------~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 91 -------VLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp -------EEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred -------EEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 344443 66899999999998 789999999999999999887641110 0 11257889999999999
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------------ccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
.+...+++|+.||.| +||++.. +.+..+..| ...|.+++|+|+|++|++++.||.|++||
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 666899999999999 9999987 666666655 46799999999999999999999999999
Q ss_pred CCCCceeeE
Q 016458 279 IRTGHQLQV 287 (389)
Q Consensus 279 ~~~~~~~~~ 287 (389)
+++++.+..
T Consensus 240 ~~~g~~~~~ 248 (902)
T 2oaj_A 240 ANSGHMIMA 248 (902)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEEEE
Confidence 998876653
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-39 Score=310.94 Aligned_cols=313 Identities=20% Similarity=0.258 Sum_probs=263.5
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
.+.....|+.........+.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 112 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV 112 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEE
Confidence 34566789888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 204 (389)
++++.||.|++|++..+. .....+.+|...|.+++|+|+++..+++++.||.|++||+.++.....+. ..
T Consensus 113 ~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~~ 182 (814)
T 3mkq_A 113 LSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT----TG 182 (814)
T ss_dssp EEEETTSEEEEEEGGGTS------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE----CC
T ss_pred EEEcCCCEEEEEECCCCc------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe----cC
Confidence 999999999999998642 25677788999999999999334799999999999999998887766663 34
Q ss_pred CCCCeeEEEeeCC-CCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 205 HTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 205 ~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
+...+.+++|+|. ++.++++++.||.|++||+++. ..+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4588999999973 5679999999999999999887 7788888999999999999999999999999999999999998
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCC--EEEEEecCCcEEEEEcccceEEEeec-------------------------
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVVLNLG------------------------- 336 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------- 336 (389)
....+..+.. .+.+++|+|++. +++++ .++.+.+|++........+.
T Consensus 262 ~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 335 (814)
T 3mkq_A 262 VEKTLNVGLE-----RSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG 335 (814)
T ss_dssp EEEEECCSSS-----SEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred EEEEeecCCC-----cEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence 8887765443 499999999987 45555 56678889875432211110
Q ss_pred --------------CcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 337 --------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 337 --------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.....+...+.+++|+|+|++|++++ ||.+.+ |++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i----~~~~~~ 387 (814)
T 3mkq_A 336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVI----YTALAW 387 (814)
T ss_dssp CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEE----EETTTT
T ss_pred ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEE----EECccc
Confidence 00023445688999999999999888 899999 987644
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-40 Score=290.05 Aligned_cols=299 Identities=16% Similarity=0.200 Sum_probs=242.0
Q ss_pred cEEEEEEcCCCCeE-EEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCC
Q 016458 69 KVYSLDWTSERNRI-VSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 69 ~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
....++++|+...+ ++++.||.|+||++... .....+..|...|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45568899886544 45788999999998664 33455678999999999999 99999999999999999998754
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
...........+.+|...|.+++|+|++..+|++++.||.|++||+.+++....+.. ..|...|.+++|+| ++.+|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l 191 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSR-DGALI 191 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---TTCCSCEEEEEECT-TSSCE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---CCCCCceEEEEECC-CCCEE
Confidence 222222356778899999999999999767999999999999999999988877621 25888999999999 88899
Q ss_pred EEeeCCCceEEEeCCCCCcceeEE-eeeccc-eEEEEEecCCCEEEEE---ecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
++++.||.|++||+++. ..+..+ ..|.+. +.+++|+|++.+|++| +.|+.|++||++++......... .+.
T Consensus 192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~ 267 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL---DTS 267 (402)
T ss_dssp EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC---CCC
T ss_pred EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec---cCC
Confidence 99999999999999987 666676 678776 8999999999999999 79999999999987652222221 122
Q ss_pred CCeeEEEeCCCCCEEEE-EecCCcEEEEEcccceE-EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeeccee
Q 016458 298 PHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWR 375 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~ 375 (389)
..+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. ..|..+|.+++|+|++.++++ .++.+++ |+
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~~~~~v~~~~~sp~~~~~~s--~~~~~~~----~~ 339 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FSSKESQRGMGYMPKRGLEVN--KCEIARF----YK 339 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--ECCSSCCSEEEECCGGGSCGG--GTEEEEE----EE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cccCCcccceEEeccccccee--cceeEEE----EE
Confidence 35899999999999875 55799999999998773 333322 236789999999999988765 4679999 99
Q ss_pred cccCcccC
Q 016458 376 VQEGALSP 383 (389)
Q Consensus 376 ~~~~~~~~ 383 (389)
+.+++..+
T Consensus 340 l~~~~~~~ 347 (402)
T 2aq5_A 340 LHERKCEP 347 (402)
T ss_dssp EETTEEEE
T ss_pred cCCCcEEE
Confidence 99987654
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-39 Score=282.73 Aligned_cols=269 Identities=14% Similarity=0.207 Sum_probs=227.0
Q ss_pred CCcccCCCcceeeeeccc-ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEE
Q 016458 48 APVSFGPTDLVCCRTLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 126 (389)
....|+.........+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++| ++.++++
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 191 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSS 191 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEE
Confidence 344566666666666665 8899999999999999999999999999999999999999999999999999 5679999
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 206 (389)
++.||.|++||+.... .....+.+|.+.|.+++|+|++ .+|++++.||.|++||+.++.....+ ..|.
T Consensus 192 ~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~ 259 (401)
T 4aez_A 192 GSRSGAIHHHDVRIAN------HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTK-----TNHN 259 (401)
T ss_dssp EETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEE-----CCCS
T ss_pred EcCCCCEEEEecccCc------ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEe-----cCCc
Confidence 9999999999998532 2567788899999999999987 78999999999999999999888887 6889
Q ss_pred CCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE--ecCCeEEEEECCCC
Q 016458 207 ADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTG 282 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~ 282 (389)
..|.+++|+|.+..++++++ .|+.|++||+++. ..+..+. +...|.+++|+|++++++++ +.||.|++||+.++
T Consensus 260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 99999999997778888866 7999999999987 6666664 67789999999999999994 48999999999987
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
........ ..+...|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus 338 ~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 338 GLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 65554332 123345999999999999999999999999999998877655
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-40 Score=279.98 Aligned_cols=251 Identities=18% Similarity=0.251 Sum_probs=202.6
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCCe
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQT 182 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~ 182 (389)
.+.+|...|.+++|+|++++|++|+.|+.|++||+..+. ......+.+|.+.|.+++|+++ .+.+|++|+.|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 346789999999999999999999999999999997632 1245678899999999999863 2378999999999
Q ss_pred EEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC-CcEEEEeeCCCceEEEeCCCCCc--ceeEEeeeccceEEEE
Q 016458 183 CVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVK 257 (389)
Q Consensus 183 i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~ 257 (389)
|++||++++. ....+ ..|...|.+++|+|.. +.+|++|+.|+.|++||++.... ....+.+|...+.+++
T Consensus 83 v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp EEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred EEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 9999999874 44455 6799999999999942 78999999999999999986522 1344567889999999
Q ss_pred EecC-----------------CCEEEEEecCCeEEEEECCCCc---eeeEeeccCCCCCCCCeeEEEeCCCC----CEEE
Q 016458 258 FFPD-----------------GNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG----RLLF 313 (389)
Q Consensus 258 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~ 313 (389)
|+|+ +++|++|+.|+.|++||++... ....+ ..|...|.+++|+|++ ++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BCCSSCEEEEECCCCSSCSCCEEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----ccCCCceEEEEecCCCCCCCceEE
Confidence 9997 4789999999999999997553 22322 2344569999999986 7999
Q ss_pred EEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 314 AGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 314 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+++.||.|++||+.+.. ....+ ..|...|.+++|+|++++|++++.||.|++ |+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~las~~~D~~v~l----w~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGDNKVTL----WKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEE----EECSSCEEEEEECTTTCCEEEEESSSCEEE----EEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhh----hcCCCcEEEEEEcCCCCEEEEEcCCCeEEE----EEEC
Confidence 99999999999987631 11223 467889999999999999999999999999 9986
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-39 Score=300.72 Aligned_cols=272 Identities=22% Similarity=0.379 Sum_probs=225.2
Q ss_pred ccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEE
Q 016458 43 RSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF 117 (389)
Q Consensus 43 ~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~ 117 (389)
.+.+.....|+... ....+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++.....+..|...|.+++|
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 33445556675543 3456789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSV 196 (389)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 196 (389)
+|++++|++|+.|+.|++||..... .........+|...|.+++|+|++. ..+++++.|+.|++||+.++.....
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 556 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGEC----KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCE----EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCc----ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE
Confidence 9999999999999999999986422 0011112257889999999999862 5799999999999999999998888
Q ss_pred ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE
Q 016458 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (389)
+ ..|...|.+++|+| ++++|++++.||.|++||+++. +.+..+. +...|.+++|+|++.+|++++ ++.|++
T Consensus 557 ~-----~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 557 L-----AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKI 627 (694)
T ss_dssp E-----CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEE
T ss_pred E-----cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEE
Confidence 8 78999999999999 8899999999999999999987 5555544 456799999999998777665 567999
Q ss_pred EECCCCceeeEeeccCCC--------------CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 277 FDIRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
||++++..+..+...... .+...+++++|+|+|++|++|+.||.|++||+.
T Consensus 628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999998877666432211 111237899999999999999999999999975
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-39 Score=284.00 Aligned_cols=277 Identities=13% Similarity=0.121 Sum_probs=232.4
Q ss_pred ccCCCCCcccCCCcce------eeeecccccCcEEEEEEcCC----C---CeEEEEecCCcEEEEeCCCCCe-----eEE
Q 016458 43 RSQGRAPVSFGPTDLV------CCRTLQGHAGKVYSLDWTSE----R---NRIVSASQDGRLIVWNALTSQK-----THA 104 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~~~~----~---~~l~~~~~dg~v~iw~~~~~~~-----~~~ 104 (389)
...+.....|+..... ....+.+|..+|++++|+|+ + ++|++++.||.|++||+.+++. ...
T Consensus 32 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 32 CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred EcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 3445556677776655 78888999999999999999 9 9999999999999999998887 888
Q ss_pred EeeC-----CCcEEEEEEC----CCCcE-EEEecCCCcEEEEeCCC------CCCCCCCCcceeee-------cccccce
Q 016458 105 IKLP-----CAWVMTCAFS----PTGQS-VACGGLDSVCSIFNLNS------PTDKDGNLPVSRML-------SGHKGYV 161 (389)
Q Consensus 105 ~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~-------~~~~~~v 161 (389)
+..| ...|.+++|+ |++++ |++++.||.|++||+.. .... .+.....+ ..|...|
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL--NWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT--CCCCEEEEEEEECCSSSSCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee--eccCcceeeeeeccccCCCCCc
Confidence 8888 5889999999 99999 99999999999999987 3311 11111244 4588999
Q ss_pred EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC---C---CCCeeEEEeeCCCCcEEEEeeCC---CceE
Q 016458 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG---H---TADVLSVSISGSNSRMFVSGSCD---STAR 232 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---g~i~ 232 (389)
.+++|+|++ ++++++.||.|++||+++++....+ .. | ...|.+++|+| ++.+|++++.| |.|+
T Consensus 190 ~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 190 TSVDISERG--LIATGFNNGTVQISELSTLRPLYNF-----ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE-----ECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEE
T ss_pred eEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEE-----eccccccccCCccceEEECC-CCCEEEEEecCCCCceEE
Confidence 999999987 8999999999999999999988888 45 7 88999999999 78899999999 9999
Q ss_pred EEeCCCCCcceeEEee-------------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEee------cc--
Q 016458 233 LWDTRVASRAVRTFHG-------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY------QQ-- 291 (389)
Q Consensus 233 i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~-- 291 (389)
+||+++. +.+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+. .+
T Consensus 262 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 262 LYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340 (397)
T ss_dssp EEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred EEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence 9999987 77888888 99999999999999999999999999999999998888876 22
Q ss_pred ---C-----CCCCCCCeeEEEeCCCC----------CEEEEEecCCcEEEEEcccce
Q 016458 292 ---H-----GENEIPHVTSIAFSISG----------RLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 292 ---~-----~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~ 330 (389)
. ...+...|.+++|+|++ ++|++++.||.|++||+.+++
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0 00114569999999998 799999999999999998763
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=276.72 Aligned_cols=262 Identities=18% Similarity=0.265 Sum_probs=216.8
Q ss_pred CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEE
Q 016458 99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLIT 176 (389)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~ 176 (389)
|+.+..+.+|...|.+++|+|++++|++|+.||.|++|++.... ......+.+|...|.+++|+++ + .+|++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s 74 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFG-TILAS 74 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCC-CEEEE
Confidence 34566788999999999999999999999999999999997422 2356678899999999999876 5 78999
Q ss_pred eeCCCeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC-cceeEEeeecc
Q 016458 177 SSGDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEG 251 (389)
Q Consensus 177 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 251 (389)
++.||.|++||+.++. ....+ ..|...|.+++|+| + +.+|++++.||.|++||++... .....+..|..
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred eccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 9999999999999987 55555 67899999999999 5 8899999999999999998763 23446678999
Q ss_pred ceEEEEEec-------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC---CCEEEEE
Q 016458 252 DVNTVKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAG 315 (389)
Q Consensus 252 ~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~ 315 (389)
.|.+++|+| ++.+|++++.||.|++||++++.......... ..+...|.+++|+|+ +++|+++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEE
Confidence 999999999 69999999999999999998776433222111 223446999999999 8999999
Q ss_pred ecCCcEEEEEcccce---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 316 YSNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 316 ~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
+.||.|++||+.++. ....+. ...|...|++++|+|++++|++++.||.|++ |++..+
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i----w~~~~~ 288 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKENLE 288 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEE----EEEEET
T ss_pred eCCCEEEEEeCCCCCccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEE----EeCCCC
Confidence 999999999998863 122221 1468899999999999999999999999999 999853
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=306.56 Aligned_cols=258 Identities=17% Similarity=0.224 Sum_probs=216.1
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEECCC--CcEEEEecCCCcEEE
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSI 135 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v 135 (389)
...+.+|.++|++++|+|++++|++|+.||.|++||+. ++.....+..|..+|.+++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35788999999999999999999999999999999998 55677788899999999999988 999999999999999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeE
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~ 211 (389)
||+.++. ......+.+|...|.+++|+|+ + .++++|+.||.|++||+.++.. ...+ ..|...|.+
T Consensus 82 wd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~-----~~~~~~v~~ 150 (753)
T 3jro_A 82 WKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIII-----DAHAIGVNS 150 (753)
T ss_dssp EEEETTE-----EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEE-----ECCSSCEEE
T ss_pred EECCCCc-----ccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEe-----ecCCCceEE
Confidence 9998742 2245677889999999999998 6 7899999999999999988732 2233 578899999
Q ss_pred EEeeCC------------CCcEEEEeeCCCceEEEeCCCCC---cceeEEeeeccceEEEEEecC---CCEEEEEecCCe
Q 016458 212 VSISGS------------NSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGT 273 (389)
Q Consensus 212 ~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~ 273 (389)
++|+|. ++.++++|+.||.|++||++... .....+.+|..+|.+++|+|+ +.+|++++.||.
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 999985 47899999999999999998763 344567789999999999999 899999999999
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
|++||++++.............+...|++++|+|+|+++++|+.||.|++||+..
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999875333222222233455699999999999999999999999999874
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=279.40 Aligned_cols=286 Identities=11% Similarity=0.072 Sum_probs=231.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---eeEEEeeC-----------------------------------
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLP----------------------------------- 108 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---~~~~~~~~----------------------------------- 108 (389)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3579999999999966665 57899999999998 55555432
Q ss_pred -------------------CCcEEEEEECCCCcEE-EEecCCCcEEEEeCC--CCCCCCCCCcceeeec--ccccceEEE
Q 016458 109 -------------------CAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLN--SPTDKDGNLPVSRMLS--GHKGYVSCC 164 (389)
Q Consensus 109 -------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~ 164 (389)
...|.+++|+|++++| ++++.||.|++|++. .+. ....+. .|...|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------VLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------CEEEEEEEECSSCEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------eeeeeecccCCCCceEE
Confidence 2269999999999996 899999999999998 433 344444 567899999
Q ss_pred EEeeCCCcEEEEeeCCCeEEEEeCCCCeeEE----EecCcccCCCCCCeeEEEeeCCC---CcEEEEeeCCCceEEEeCC
Q 016458 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSN---SRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~ 237 (389)
+|+|++ .+|++++.+|.|++|++.++.... .+ ..|...|.+++|+| + +.+|++++.|+.|++||++
T Consensus 156 ~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 156 SIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPI-----LGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCS-----EECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred EEcCCC-CEEEEEeCCCcEEEEecCCcccccccceee-----ecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence 999997 789999999999999998876543 33 56889999999999 6 8899999999999999999
Q ss_pred CCCcceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--------------------CCC
Q 016458 238 VASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------------------ENE 296 (389)
Q Consensus 238 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------~~~ 296 (389)
+. ..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..... ...
T Consensus 229 ~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 229 QC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred CC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 87 55555 56899999999999 999999999999999999999988877753210 012
Q ss_pred CCCeeEEEeCCCCCEEEEEe-cCCcEEEEEc--ccc---eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC------C
Q 016458 297 IPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLA---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------D 364 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d 364 (389)
...+.+++|+|++++|++++ .++.|++|++ ..+ ..+..+ ..| +.|.+++|+|++.++++++. +
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~ 381 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII----TFP-YNVISLSAHNDEFQVTLDNKESSGVQK 381 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE----ECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe----ccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence 33589999999999999998 8999999999 555 666666 456 78999999996544444443 4
Q ss_pred CeeEEeecceeccc
Q 016458 365 TNLKVNLGFWRVQE 378 (389)
Q Consensus 365 g~i~i~~~~W~~~~ 378 (389)
..|.+ |.+..
T Consensus 382 ~~i~v----~~~~~ 391 (450)
T 2vdu_B 382 NFAKF----IEYNL 391 (450)
T ss_dssp CSEEE----EEEET
T ss_pred cceEE----EEEEc
Confidence 55788 76653
No 87
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.8e-38 Score=271.22 Aligned_cols=292 Identities=11% Similarity=0.069 Sum_probs=216.4
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCS 134 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~ 134 (389)
...++..+.+|.+.|++++|+|+|++|++|+.++ +++||..+++.......+ .+..+++.++++.+ ++++.|+.|+
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEE
Confidence 3345556789999999999999999999998775 789999877666554433 47788888888877 5677889999
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEE
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
+||..++. ....+. +...|.++.++++. ++++ .++.|++||+.++ +.+..+ .. +...++
T Consensus 85 iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~-----~~---~~~~~~ 144 (355)
T 3vu4_A 85 IWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDD-----IR---FGGVCE 144 (355)
T ss_dssp EEETTTTE-------EEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCC-----EE---EEEEEE
T ss_pred EEECCCCc-------EEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEe-----cc---CCceEE
Confidence 99998754 344444 66789999998753 3333 4789999999987 554444 11 344555
Q ss_pred eeCCCCcEEEE--eeCCCceEEEeCCCCC--------------cc-eeEEeeeccceEEEEEecCCCEEEEEecCCe-EE
Q 016458 214 ISGSNSRMFVS--GSCDSTARLWDTRVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CR 275 (389)
Q Consensus 214 ~~~~~~~~l~~--~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~ 275 (389)
+++ .++++ |+.||.|++||+++.. .+ +..+.+|...|.+++|+|++++|++++.||+ |+
T Consensus 145 ~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 665 45554 6899999999998753 12 6788999999999999999999999999998 99
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE--EeecC----------------
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LNLGS---------------- 337 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~---------------- 337 (389)
+||+++++.+..+... .+...|.+++|+|++++|++++.|+.|++||+..+... ..+..
T Consensus 222 iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRG---LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEETTTCCEEEEEECT---TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEECCCCcEEEEEEcC---CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 9999999998887631 12235999999999999999999999999999754311 11100
Q ss_pred -cCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 338 -LQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 338 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
....+......++|++++++|++++.||.+++ |++..+.
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~----~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIET----FKVVFDD 338 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE----EEEEEET
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE----EEEEcCC
Confidence 00122334577999999999999999999999 9988754
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-39 Score=280.99 Aligned_cols=266 Identities=17% Similarity=0.249 Sum_probs=221.2
Q ss_pred CCcccCCCcceeeeeccc-----ccCcEEEEEEcCC----CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEEC
Q 016458 48 APVSFGPTDLVCCRTLQG-----HAGKVYSLDWTSE----RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~ 118 (389)
....|+.........+.. |.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 124 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence 456677665555555554 5578999999998 6699999999999999999999999999999999999999
Q ss_pred C-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE
Q 016458 119 P-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 194 (389)
Q Consensus 119 ~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 194 (389)
| ++.+|++++.||.|++||+..+. ....+ ..|...|.+++|+|++ .+|++++.||.|++||+.+++..
T Consensus 125 ~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 125 PRDPNLLLSVSKDHALRLWNIQTDT-------LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTTE-------EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHH
T ss_pred CCCCCEEEEEeCCCeEEEEEeecCe-------EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccc
Confidence 9 99999999999999999998754 44444 6899999999999987 78999999999999999886544
Q ss_pred EEecC-----------------------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc----------
Q 016458 195 SVFGG-----------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---------- 241 (389)
Q Consensus 195 ~~~~~-----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------- 241 (389)
..+.. .....|...|.+++|+ ++++++++.||.|++||++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 32210 0012388999999998 46999999999999999987632
Q ss_pred ---ceeEEeeeccceEEEEEecC--CCEEEEEecCCeEEEEECCCCceee----EeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 242 ---AVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQ----VYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 242 ---~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
.+..+..|...|.+++|+|+ +++|++++.||.|++||+.+++... .+.. ..+...|++++|+|++++|
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH---HKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC---TTCCSCEEEEEECTTSSEE
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc---cccCCceEEEEeCCCCCeE
Confidence 36677889999999999999 9999999999999999999876543 3322 2224469999999999999
Q ss_pred EEEecCCcEEEEEcc
Q 016458 313 FAGYSNGDCYVWDTL 327 (389)
Q Consensus 313 ~~~~~dg~i~i~d~~ 327 (389)
++++.||.|++||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 999999999999985
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.7e-38 Score=277.16 Aligned_cols=261 Identities=23% Similarity=0.367 Sum_probs=217.9
Q ss_pred EEEeeCCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCC---CCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458 103 HAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178 (389)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 178 (389)
.....|.+.|++++|+|+ +.+|++++.+|.|++|++...... .........+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344568889999999997 789999999999999999762111 1123456777899999999999999855999999
Q ss_pred CCCeEEEEeCCCCee-------EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC--cceeEEeee
Q 016458 179 GDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGH 249 (389)
Q Consensus 179 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~ 249 (389)
.||.|++||+..+.. ...+ ..|...|.+++|+|.++.+|++++.||.|++||++... ..+..+..|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIF-----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred CCCeEEEEeCCCCCCCCceeccceee-----cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999987422 2233 57889999999999788999999999999999999763 567778899
Q ss_pred ccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEc
Q 016458 250 EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDT 326 (389)
Q Consensus 250 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~ 326 (389)
...|++++|+|++. +|++|+.||.|++||++.. ..+..+..+. ..|.+++|+|+++ +|++++.||.|++||+
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~-----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK-----DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS-----SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC-----CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999887 6889999999999999984 4555554433 3599999999985 7999999999999999
Q ss_pred cc--------------ceEEEeecCcCCCCCCCeeEEEECCCCC-eEEeeeCCCeeEEeecceecccCcc
Q 016458 327 LL--------------AKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 327 ~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
.. ...+..+ .+|...|++++|+|++. +|++++.||.|+| |++.++.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i----w~~~~~~~ 413 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIH----GGHTAKISDFSWNPNEPWIICSVSEDNIMQV----WQMAENVY 413 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEEC----CCCSSCEEEEEECSSSTTEEEEEETTSEEEE----EEECHHHH
T ss_pred CCCccccCccccccCCcceEEEc----CCCCCCceEEEECCCCCCEEEEEECCCCEEE----eEcccccc
Confidence 87 2455555 78999999999999999 8999999999999 99987644
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-37 Score=264.48 Aligned_cols=274 Identities=23% Similarity=0.380 Sum_probs=231.5
Q ss_pred cccCCCCCcccCCCc-----ceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEE
Q 016458 42 SRSQGRAPVSFGPTD-----LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~ 116 (389)
+.+.+.....|+... ..+.+.+.+|.+.|.+++|+|++++|++++.|+.|++|+............+...+..+.
T Consensus 56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence 345566677776543 356778999999999999999999999999999999999999999888888889999999
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC-cEEEEeeCCCeEEEEeCCCCeeEE
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTS 195 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 195 (389)
+++++.+|++++.|+.+++||..... .......+|...+.+++|++++. .++++++.|+.|++||+.++....
T Consensus 136 ~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 136 FSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 99999999999999999999987532 23455678899999999998753 467899999999999999999988
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
.+ ..|...|.+++|+| ++++|++|+.||.|++||+++. ..+..+. +...+.+++|+|++. +++++.|+.|+
T Consensus 210 ~~-----~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~d~~i~ 280 (340)
T 4aow_A 210 NH-----IGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYTLD-GGDIINALCFSPNRY-WLCAATGPSIK 280 (340)
T ss_dssp EE-----CCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSSS-EEEEEETTEEE
T ss_pred Ee-----cCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeeeec-CCceEEeeecCCCCc-eeeccCCCEEE
Confidence 88 78999999999999 8899999999999999999987 6666665 456899999999875 55667799999
Q ss_pred EEECCCCceeeEeeccC----CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 276 LFDIRTGHQLQVYYQQH----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
+||++.+.....+.... ...+...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999887766654321 12345579999999999999999999999999999875
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-37 Score=274.41 Aligned_cols=265 Identities=15% Similarity=0.258 Sum_probs=223.8
Q ss_pred cccCCCcceeeeec--ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe
Q 016458 50 VSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 50 ~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 127 (389)
..|+.....+.+.+ .+|.+.|++|+|+|+|++||+|+.||+|++||+.+++.+..+..|...+.++.+ ++..|++|
T Consensus 128 ~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sg 205 (420)
T 4gga_A 128 YLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205 (420)
T ss_dssp EEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEE
Confidence 45666666665544 578889999999999999999999999999999999999999999999999887 46799999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee----EEEecCcccC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR----TSVFGGEFQS 203 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~ 203 (389)
+.|+.+++|+..... .....+.+|...+..+.++|++ .++++++.|+.+++|+..++.. .... .
T Consensus 206 s~d~~i~~~d~~~~~------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-----~ 273 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-----T 273 (420)
T ss_dssp ETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE-----C
T ss_pred eCCCceeEeeecccc------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee-----c
Confidence 999999999987633 2567788999999999999997 7899999999999999987653 2333 5
Q ss_pred CCCCCeeEEEeeCCCCcEEEEe--eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEEC
Q 016458 204 GHTADVLSVSISGSNSRMFVSG--SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDI 279 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~ 279 (389)
.|...|.+++|+|.+..+++++ +.|+.|++||++++ .....+. +...+.++.|+|+++.+++++ .||.|++||+
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 7889999999999888888764 57999999999987 6666665 446789999999999988765 7899999999
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
.+++.+..+..+. ..|++++|+|+|++|++|+.||.|+|||+....+....
T Consensus 352 ~~~~~v~~l~gH~-----~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 352 PTMAKVAELKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp TTCCEEEEECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred CCCcEEEEEcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 9999988886543 35999999999999999999999999999776555444
No 92
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=267.86 Aligned_cols=275 Identities=16% Similarity=0.189 Sum_probs=238.2
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
...+.....|+.........+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++
T Consensus 50 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 50 CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN 128 (369)
T ss_dssp EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence 3445667788888889999999999999999999999999999999999999999999998888 778899999999999
Q ss_pred EEEEecCC-----CcEEEEeCCCCCCCCC----CCcceeeeccccc--ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-
Q 016458 123 SVACGGLD-----SVCSIFNLNSPTDKDG----NLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSGDQTCVLWDITT- 190 (389)
Q Consensus 123 ~l~~~~~d-----g~i~vw~~~~~~~~~~----~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 190 (389)
++++++.+ |.|++|++........ .......+..|.. .+.+++|+|++ .++++++.||.|++||+.+
T Consensus 129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTT
T ss_pred EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCC
Confidence 99999998 9999999987542110 0112334455655 89999999997 6899999999999999998
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
......+ ..|...|.+++|+| ++.+|++++.||.|++||+++. ..+..+. +...+.+++|+|+++++++++.
T Consensus 208 ~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 208 YEYVDSI-----DLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp TEEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred cEeEEEE-----ecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEeec
Confidence 6777777 67899999999999 8899999999999999999987 6666665 7888999999999999999999
Q ss_pred CC--------------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 271 DG--------------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 271 dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
++ .+++||+.+++....+..+.. .|++++|+|++++|++++.||.|++|++..+...
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-----PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp CC-------------CEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCCceEEEEecCCCcceeEEEecCCCcchhheecccC-----cEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 88 899999999998888765443 4999999999999999999999999999876543
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-38 Score=279.89 Aligned_cols=260 Identities=15% Similarity=0.276 Sum_probs=220.4
Q ss_pred eeecccccCcEEEEEEcCC-CCeEEEEecCCcEEEEeCCC----------CCeeEEEeeCCCcEEEEEECCCCc-EEEEe
Q 016458 60 CRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALT----------SQKTHAIKLPCAWVMTCAFSPTGQ-SVACG 127 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 127 (389)
...+.+|.+.|++++|+|+ +.+|++++.||.|++|++.+ ......+..|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456789999999999997 67999999999999999986 677888899999999999999988 99999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC---eeEEEecCcccCC
Q 016458 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSG 204 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~ 204 (389)
+.||.|++|++...............+.+|...|.+++|+|++..+|++++.||.|++||++++ .....+ ..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~ 275 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DA 275 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-----EC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-----ec
Confidence 9999999999987432211122245667899999999999976689999999999999999987 455555 57
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG- 282 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~- 282 (389)
|...|.+++|+|....++++|+.||.|++||++....++..+..|...|.+++|+|++. +|++++.||.|++||+...
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 88999999999966668999999999999999986678889999999999999999885 6899999999999999873
Q ss_pred -------------ceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEecCCcEEEEEcccc
Q 016458 283 -------------HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 283 -------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 329 (389)
..+..+ ..+...|++++|+|+++ +|++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 222222 22344699999999999 9999999999999998653
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.3e-38 Score=271.61 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=227.2
Q ss_pred CCCCCcccCCCcce--eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE--eeCCCcEEEEEECCC
Q 016458 45 QGRAPVSFGPTDLV--CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPT 120 (389)
Q Consensus 45 ~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~ 120 (389)
.+.....|+..... ....+.+|.+.|++++|+|++++|++++.||.|++||+.+++..... ..|...|.+++|+|+
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 44556677776665 88899999999999999999999999999999999999888755444 557889999999999
Q ss_pred CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-----------
Q 016458 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----------- 189 (389)
Q Consensus 121 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----------- 189 (389)
+++|++++.||.|++|++..... ..........|...|.+++|+|++ .++++++.||.|++||+.
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred CCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEccccccccccccc
Confidence 99999999999999999987431 111233346789999999999987 789999999999999954
Q ss_pred -------CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCC
Q 016458 190 -------TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 190 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
.+.....+ ..|...+.+++|+| ++++|++++.||.|++||+++. +.+..+..|..+|.+++|+|++
T Consensus 184 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~ 256 (372)
T 1k8k_C 184 PWGSKMPFGELMFES-----SSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITES 256 (372)
T ss_dssp TTBSCCCTTCEEEEC-----CCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETT
T ss_pred ccccccchhhheEec-----CCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCC
Confidence 56777776 67889999999999 8889999999999999999987 7888889999999999999999
Q ss_pred CEEEEEecCCeEEEEECCC--Cceee--Ee--------------------------e------ccCCCCCCCCeeEEEeC
Q 016458 263 NRFGTGSDDGTCRLFDIRT--GHQLQ--VY--------------------------Y------QQHGENEIPHVTSIAFS 306 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~--~~~~~--~~--------------------------~------~~~~~~~~~~i~~~~~~ 306 (389)
.+|+++ .|+.|++|+++. +.... .+ . ......|...|++++|.
T Consensus 257 ~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 335 (372)
T 1k8k_C 257 SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 335 (372)
T ss_dssp EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE
T ss_pred CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe
Confidence 988877 899999999987 42100 00 0 11112456679999866
Q ss_pred -CCC---CEEEEEecCCcEEEEEcccceE
Q 016458 307 -ISG---RLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 307 -~~~---~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
++| ++|++|+.||.|++||+.+++.
T Consensus 336 ~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 336 SGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cCCCcceeeEEEecCCCceEEEEecChhH
Confidence 677 9999999999999999987553
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-39 Score=284.66 Aligned_cols=288 Identities=14% Similarity=0.187 Sum_probs=228.1
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE-eeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (389)
Q Consensus 74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (389)
.|+|++..+++++ .|+ .+++.+..+ ..|.+.|++++|+| ++++|++|+.||.|++||+....... .....
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCS
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-cccee
Confidence 3778888777765 387 567888888 78889999999999 99999999999999999987621110 11112
Q ss_pred eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC---CCeeEEEecCc------c-cCCCCCCeeEEE--eeCCCC
Q 016458 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT---TGLRTSVFGGE------F-QSGHTADVLSVS--ISGSNS 219 (389)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~------~-~~~~~~~v~~~~--~~~~~~ 219 (389)
.. ..|...|.+++|+|++ .+|++++.||.|++||+. ++......... . ...+...+.++. +++ ++
T Consensus 106 ~~-~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 182 (437)
T 3gre_A 106 LT-YDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EK 182 (437)
T ss_dssp EE-EECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SC
T ss_pred ee-ccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CC
Confidence 22 2589999999999987 789999999999999995 44443332110 0 001455677776 445 78
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 297 (389)
.+|++++.||.|++||+++. +.+..+.. |...|.+++|+|++++|++|+.||.|++||+++++.+..+...+.
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---- 257 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH---- 257 (437)
T ss_dssp EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC----
T ss_pred CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC----
Confidence 89999999999999999987 77888887 889999999999999999999999999999999888777653222
Q ss_pred CCeeEEEe----CCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--------------------C--CCCCCeeEEEE
Q 016458 298 PHVTSIAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--------------------N--SHEGRITCLGL 351 (389)
Q Consensus 298 ~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~--~~~~~v~~~~~ 351 (389)
.+|.+++| +|++.+|++|+.||.|++||+.+++.+..+.... . .|...|++++|
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 25999955 4568899999999999999999998877764210 1 27778999999
Q ss_pred CCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 352 SADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 352 ~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+ ++++|++|+.||.|++ ||+.+++..
T Consensus 338 ~-~~~~l~s~~~d~~i~~----wd~~~~~~~ 363 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVM----FSLNELSSS 363 (437)
T ss_dssp E-TTEEEEEEGGGTEEEE----EETTCGGGC
T ss_pred C-CceEEEecCCCCeEEE----EECCCcccc
Confidence 9 7789999999999999 999998754
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-37 Score=258.20 Aligned_cols=267 Identities=19% Similarity=0.244 Sum_probs=228.9
Q ss_pred cccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEEC
Q 016458 42 SRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFS 118 (389)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~ 118 (389)
....+.....|+.........+..|.+.|.+++|+|++++|++++.||.|++|++... +....+..|...|.+++|
T Consensus 34 s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 112 (313)
T 3odt_A 34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112 (313)
T ss_dssp EEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred EEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence 3445666778888888899999999999999999999999999999999999998664 557778889999999999
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
+++++++++.||.|++||... ....+..|...+.++.|.|..+.++++++.||.|++|| .......+.
T Consensus 113 -~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~ 180 (313)
T 3odt_A 113 -QDGVVISGSWDKTAKVWKEGS---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS 180 (313)
T ss_dssp -ETTEEEEEETTSEEEEEETTE---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC
T ss_pred -cCCEEEEEeCCCCEEEEcCCc---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe
Confidence 678999999999999999322 56777889999999999994457999999999999999 445555552
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
..+...+.+++|+| ++. +++++.||.|++||+++. +.+..+..|...|.+++|+|++ .|++++.||.|++||
T Consensus 181 ----~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 181 ----GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp ----SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred ----ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence 23889999999998 665 889999999999999987 7888899999999999999999 699999999999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
+++++....+..+.. .+.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 253 ~~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 253 KENGSLKQVITLPAI-----SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp TTTCCEEEEEECSSS-----CEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred CCCCceeEEEeccCc-----eEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 999998888766543 499999999998 567889999999999987765543
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-39 Score=278.68 Aligned_cols=251 Identities=12% Similarity=0.161 Sum_probs=201.1
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeE
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 183 (389)
....+.++|.+++|+|++++|++|+.|+.|++|++.++. ......+.+|...|.+++|+|++ .+|++++.|+.|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v 79 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNA 79 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeE
Confidence 345567789999999999999999999999999998641 12556678899999999999997 789999999999
Q ss_pred EEEeCCCCe---eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--ceeEEee-eccceEEEE
Q 016458 184 VLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVK 257 (389)
Q Consensus 184 ~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~i~~~~ 257 (389)
++||+.++. ....+ ..|...|.+++|+| ++++|++++.|+.|++||++.... ....+.. |...|.+++
T Consensus 80 ~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp EEC------CCCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred EEEEcCCCCceeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 999999877 44444 67899999999999 888999999999999999997632 4667777 999999999
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCce--------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
|+|++++|++++.||.|++||++.... ........ .+...|.+++|+|++++|++++.||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999863221 11111111 34456999999999999999999999999
Q ss_pred EEcccceE----EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 324 WDTLLAKV----VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 324 ~d~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
||+.+++. +..+ ..|...|.+++|+|++++|++++.|+.+ + |+..
T Consensus 232 wd~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~----~~~~ 280 (377)
T 3dwl_C 232 AYPSAPEQPPRALITV----KLSQLPLRSLLWANESAIVAAGYNYSPI-L----LQGN 280 (377)
T ss_dssp CEECSTTSCEEECCCE----ECSSSCEEEEEEEETTEEEEEESSSSEE-E----ECCC
T ss_pred EECCCCCCcceeeEee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-E----EEeC
Confidence 99998876 5555 7899999999999999999998877766 5 5554
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=267.90 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=215.4
Q ss_pred CCCCcccCCCcceeeee-cccccCcEEEEEEcCC---CCeEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEE----
Q 016458 46 GRAPVSFGPTDLVCCRT-LQGHAGKVYSLDWTSE---RNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCA---- 116 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~---- 116 (389)
+.....|+......... ..+|.++|++++|+|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 122 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG 122 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence 44556676665544333 3379999999999998 6999999999999999999988 8888999999999995
Q ss_pred --ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc----cceEEEE----EeeCCCcEEEEeeCCCeEEEE
Q 016458 117 --FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK----GYVSCCQ----YVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 117 --~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~~~l~~~~~dg~i~iw 186 (389)
|+|++++|++++.||.|++||+..+.. ....+..|. ..+.++. |+|++ .++++++.||.|++|
T Consensus 123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLF 195 (357)
T ss_dssp GGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEE
T ss_pred cccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEE
Confidence 578999999999999999999987431 233444443 3788888 66776 789999999999999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCcceeEEe-----eeccceEEEEEe
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDVNTVKFF 259 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~~~~~ 259 (389)
|++++...... .+...|.+++|+|. ++.++++++.||.|++||++.. .....+. +|...|.+++|+
T Consensus 196 d~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 196 DLRNMALRWET------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp ETTTTEEEEEE------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEE
T ss_pred ECccCceeeec------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEEC
Confidence 99999875553 67889999999984 5778999999999999999876 4444443 899999999999
Q ss_pred cCCC-EEEEEecCCeEEEEECCCCcee-------------------eEeeccCCCCCCCCeeEEEeCCCCCEEE-EEecC
Q 016458 260 PDGN-RFGTGSDDGTCRLFDIRTGHQL-------------------QVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSN 318 (389)
Q Consensus 260 ~~~~-~l~~~~~dg~i~i~d~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d 318 (389)
|++. +|++++.||.|++||++.+... ..+.. +...|++++|+|++++|+ +++.|
T Consensus 269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-----STQPISSLDWSPDKRGLCVCSSFD 343 (357)
T ss_dssp TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-----CSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc-----CCCCeeEEEEcCCCCeEEEEecCC
Confidence 9998 8999999999999999865432 22222 344699999999999888 79999
Q ss_pred CcEEEEEcccceE
Q 016458 319 GDCYVWDTLLAKV 331 (389)
Q Consensus 319 g~i~i~d~~~~~~ 331 (389)
|.|++||+.+.+.
T Consensus 344 ~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 344 QTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEECCCccc
Confidence 9999999986543
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-38 Score=274.71 Aligned_cols=264 Identities=9% Similarity=0.061 Sum_probs=212.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (389)
.....|.+++|+|||+++|+++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3457899999999999999999999999 7555544 46899999999999999 46666666543211
Q ss_pred CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC-----CeeEEEeeCCCC
Q 016458 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DVLSVSISGSNS 219 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 219 (389)
...+ .|...|.+++|+|+| .+|++++.||.|++||... .+..+ . |.. .+.+++|+| ++
T Consensus 79 ------~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-----~-~~~~~~~~sv~svafSP-DG 141 (588)
T 2j04_A 79 ------LLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-----D-SKGNLSSRTYHCFEWNP-IE 141 (588)
T ss_dssp ------SSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-----C-CSSCSTTTCEEEEEECS-SS
T ss_pred ------Eeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-----c-CCCccccccEEEEEEcC-CC
Confidence 1111 457889999999998 7899999999999999544 44444 3 443 599999999 89
Q ss_pred cEEEEeeCCCceEEEeCCCCCc------ceeEE----eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---e
Q 016458 220 RMFVSGSCDSTARLWDTRVASR------AVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---Q 286 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~ 286 (389)
++|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+|+| +++++.|+.|++||+..+... .
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence 9999999999999999987621 24665 5677899999999999 888999999999999887632 2
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE--CCCCCeEEeeeCC
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWD 364 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d 364 (389)
.+... +...|.+++|+ |+.|++++ ++.|++||+.+++..... .+|.+.|.+++| +||+..|++++.|
T Consensus 220 tL~~~----h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 220 MIQNA----SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp EEECC----CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred eeccc----ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 33222 22359999999 68999887 699999999988774443 479999999999 9999999999999
Q ss_pred CeeEEeecceecc
Q 016458 365 TNLKVNLGFWRVQ 377 (389)
Q Consensus 365 g~i~i~~~~W~~~ 377 (389)
|. ++ |..+
T Consensus 289 G~-kl----w~~d 296 (588)
T 2j04_A 289 SY-KV----LLED 296 (588)
T ss_dssp EE-EE----EESS
T ss_pred CC-EE----Eeec
Confidence 99 99 9875
No 100
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=274.07 Aligned_cols=262 Identities=17% Similarity=0.296 Sum_probs=227.9
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-------------
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------------- 111 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~------------- 111 (389)
.+.....|+ ........+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 128 ~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 344556677 566778889999999999999999999999999999999999999999888877766
Q ss_pred --EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 112 --VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 112 --v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
+.+++|+|++ .+++++.+|.|++||+..+. ....+..|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus 207 ~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 207 SLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-------PTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp CCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-------CSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSS
T ss_pred ceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-------eeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence 8999999875 47888899999999998754 456677899999999999997 689999999999999999
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
++.....+ ..|...+.+++|+| ++ ++++++.||.|++||+++. ..+..+..|...|.+++|+|++++|++++
T Consensus 278 ~~~~~~~~-----~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 278 NGNSQNCF-----YGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp SBSCSEEE-----CCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccceEe-----cCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 98888887 67889999999999 55 9999999999999999987 77888888999999999999999999999
Q ss_pred cCCeEEEEECCCCc--------------------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 270 DDGTCRLFDIRTGH--------------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 270 ~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
.||.|++||++++. .+..+..+.. ...|++++|+|++++|++++.||.|++||+.
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999998877 5555544321 1159999999999999999999999999985
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-37 Score=267.77 Aligned_cols=267 Identities=15% Similarity=0.134 Sum_probs=214.3
Q ss_pred EEeCCCCCeeEEEeeCCCcEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCC
Q 016458 93 VWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171 (389)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 171 (389)
+|+.........+..|...|.+++|+|++ ++|++|+.||.|++||+.++. ........+|...|.+++|+|++.
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----KTSFIQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----CEEEECCCSTTCBEEEEEEETTEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----cceeeecCCcCCceeEEEeCCCCC
Confidence 34445566677788899999999999999 999999999999999998744 112222347999999999999544
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 251 (389)
.+|++++.|+.|++||+.+.. ...+... ..+...|.+++|+| ++.+|++++.|+.|++||++ ...+..+..|..
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~ 205 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSV-IQVFAKT--DSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCE-EEEEECC--CCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT--SCEEEEEECSSS
T ss_pred CEEEEEeCCCEEEEEECCCCc-eEEEecc--CCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC--CCEEEEeccCCC
Confidence 899999999999999999644 3343211 34558899999999 88899999999999999995 367888899999
Q ss_pred ceEEEEEecCCC-EEEEEecCCeEEEEECCC----CceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEE
Q 016458 252 DVNTVKFFPDGN-RFGTGSDDGTCRLFDIRT----GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 252 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d 325 (389)
.|.+++|+|+++ +|++++.|+.|++||+++ +.....+ . +...|.+++|+| ++++|++++.||.|++||
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 999999999999 999999999999999998 4444444 2 233599999999 999999999999999999
Q ss_pred cccceEEEeecCcC---CCCC----------CCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 326 TLLAKVVLNLGSLQ---NSHE----------GRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 326 ~~~~~~~~~~~~~~---~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+.+++....+.... ..|. +.+..++|+|++++ +++.||.|++ ||+.+++..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~i----wd~~~~~~~ 343 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDI----YDANSGGLV 343 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEE----EETTTCCEE
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEE----EecCCCcee
Confidence 99876655542100 1122 34555778888877 8889999999 999988764
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-38 Score=268.78 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=214.3
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC--CCCCCc-c
Q 016458 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--KDGNLP-V 150 (389)
Q Consensus 74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~-~ 150 (389)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+...... ...... .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344577899999999999999999999888877 356788889988 99999999999998774210 000111 1
Q ss_pred eeeecccccceEEEEEee--CCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 151 SRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
.....+|.+.|.+++|+| ++ .++++++.||.|++||++++....... ..+...+.+++|+| ++.+|++|+.|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~d 191 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPD 191 (343)
T ss_dssp EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTT
T ss_pred EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCC
Confidence 222336678999999999 87 789999999999999999998866552 34556799999999 88999999999
Q ss_pred CceEEEeCCCCCcceeEEee-eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe--eEEEe
Q 016458 229 STARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAF 305 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i--~~~~~ 305 (389)
|.|++||+++.......+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+..... +...+ .+++|
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 268 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDI 268 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEE
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--ccccccceEEEE
Confidence 99999999988433367777 999999999999999999999 55999999999876654433111 11123 46999
Q ss_pred CCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC---CCCeEEeeeCCCeeEE
Q 016458 306 SISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWDTNLKV 369 (389)
Q Consensus 306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i 369 (389)
+|+|++|++++. |+.+++|++......... .++..++|.+ +...+++++.||.+.+
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred CCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEEecCCceEE
Confidence 999999999988 999999998765433222 4677888888 8889999999999988
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.7e-36 Score=265.22 Aligned_cols=289 Identities=14% Similarity=0.139 Sum_probs=237.7
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE-----EeeCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-----IKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
.....+..+. .+.+++|+|++.++++++.++.|++||+.+++.... +..|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 5555665554 466999999777888888899999999999988763 3467788999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
|++||+.++. ....+..|...+.+++|+|++..++++++.|+.|++||+.+++....+ .....+.++
T Consensus 193 v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT------DKIGLPRGL 259 (433)
T ss_dssp EEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC------CCCSEEEEE
T ss_pred EEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe------cCCCCceEE
Confidence 9999998754 556677888999999999998555566668999999999999887776 234559999
Q ss_pred EeeCCCCcEEEEee--------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCc
Q 016458 213 SISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 213 ~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~ 283 (389)
+|+| +++.+++++ .||.|++||+++. +....+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus 260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 9999 777777777 4889999999876 444443 566789999999999755 666899999999999888
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---------------CCcEEEEEcccceEEEeecCcCCCCCCCeeE
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 348 (389)
....+... ..+.+++|+|+|+++++++. ||.|++||+.+++.+..+ .. ...+.+
T Consensus 337 ~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~-~~~~~~ 405 (433)
T 3bws_A 337 VQKSIPVF------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA-GNQPTG 405 (433)
T ss_dssp EEEEEECS------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC-SSSEEE
T ss_pred EEEEecCC------CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC-CCCCce
Confidence 77666432 24899999999999988876 579999999999988887 33 457899
Q ss_pred EEECCCCCeEEeeeC-CCeeEEeecceeccc
Q 016458 349 LGLSADGSALCTGSW-DTNLKVNLGFWRVQE 378 (389)
Q Consensus 349 ~~~~~~~~~l~~~~~-dg~i~i~~~~W~~~~ 378 (389)
++|+|+|++|++++. |+.|++ |+++.
T Consensus 406 ~~~s~dg~~l~~~~~~d~~i~v----~~~~~ 432 (433)
T 3bws_A 406 LDVSPDNRYLVISDFLDHQIRV----YRRDG 432 (433)
T ss_dssp EEECTTSCEEEEEETTTTEEEE----EEETT
T ss_pred EEEcCCCCEEEEEECCCCeEEE----EEecC
Confidence 999999999998875 999999 99863
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.6e-37 Score=271.38 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=206.3
Q ss_pred CeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458 100 QKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 178 (389)
........|...|++++|+| ++++||+|+.||.|+|||+..+. ......+.+|.+.|++++|+|.++.+|++++
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 44456677888999999999 56799999999999999998743 2244556789999999999986558999999
Q ss_pred CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE
Q 016458 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 258 (389)
Q Consensus 179 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~ 258 (389)
.||+|++||++++........ ..+...+.+++|+| ++.+|++|+.||.|++||++. +.+..+.+|...|.+++|
T Consensus 185 ~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 185 MEGTTRLQDFKGNILRVFASS---DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp SSSCEEEEETTSCEEEEEECC---SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEE
T ss_pred CCCEEEEeeccCCceeEEecc---CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeee
Confidence 999999999987655444311 33455688999999 889999999999999999874 566778899999999999
Q ss_pred ecCCC-EEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 259 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 259 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
+|++. +|++++.|+.|++||+++.+....+... ..+...|++++|+|+|++|++++.||.|++||+.++.....+..
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC--CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEe--eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 99876 7889999999999999987655444221 23445699999999999999999999999999998877766632
Q ss_pred cCCCCC--CCeeEEEECCCCCeEEeee------------CCCeeEEeecceecccCccc
Q 016458 338 LQNSHE--GRITCLGLSADGSALCTGS------------WDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 338 ~~~~~~--~~v~~~~~~~~~~~l~~~~------------~dg~i~i~~~~W~~~~~~~~ 382 (389)
....+. ..+....|+|++.++++++ .++.|++ ||..+|++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i----wd~~~g~~~ 391 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV----FDGNSGKMM 391 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE----ECSSSCCEE
T ss_pred ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE----EECCCCcEE
Confidence 111111 1223345666555555443 3357899 999998764
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.9e-37 Score=266.74 Aligned_cols=269 Identities=17% Similarity=0.232 Sum_probs=220.9
Q ss_pred CCCCCcccCCCcc----eeeeecccccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCC-------CeeEEEeeCCCcE
Q 016458 45 QGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWV 112 (389)
Q Consensus 45 ~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v 112 (389)
.+.....|+.... .....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ +.+..+..|...|
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 3444555654332 34556889999999999999 8999999999999999999988 6688889999999
Q ss_pred EEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeee--cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 113 MTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 113 ~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
.+++|+|++ .+|++++.||.|++||+.++. ....+ ..|...|.+++|+|++ .+|++++.||.|++||++
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-------AVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTE-------EEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETT
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCC-------ccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCC
Confidence 999999998 699999999999999998754 55666 7899999999999987 789999999999999999
Q ss_pred CCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEe---eCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCE
Q 016458 190 TGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 264 (389)
++.....+. ..|... +.++.|+| ++.+|++| +.|+.|++||++....++.... .|...+.+++|+|++++
T Consensus 207 ~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 281 (402)
T 2aq5_A 207 KGTVVAEKD----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281 (402)
T ss_dssp TTEEEEEEE----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTE
T ss_pred CCceeeeec----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCE
Confidence 998887762 245444 89999999 78899998 7899999999998755444443 57788999999999999
Q ss_pred EEE-EecCCeEEEEECCCCce-eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 265 FGT-GSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 265 l~~-~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
|++ ++.||.|++||+.+++. +..+.... +..++.+++|+|++.++++ .++.+++|++.++..
T Consensus 282 l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 282 VYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 965 55799999999998874 33333322 2345999999999998765 566899999987654
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-36 Score=268.91 Aligned_cols=275 Identities=24% Similarity=0.460 Sum_probs=221.8
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (389)
..+.....|+....+....+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+ +..
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~ 225 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGM 225 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTE
T ss_pred eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCE
Confidence 44556678888889999999999999999999 67899999999999999999999999999999999999997 459
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
+++|+.||.|++||+..+. .......+.+|...|.++.| ++ .++++|+.||.|++||+.+++....+ .
T Consensus 226 l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~-----~ 293 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTL-----N 293 (435)
T ss_dssp EEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEE-----E
T ss_pred EEEeeCCCcEEEEeCCCCC----CceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEE-----c
Confidence 9999999999999998754 22234677889999999999 33 68999999999999999999999888 6
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
.|...|.++.++ ++++++|+.||.|++||++++ ..+..+.+|...|.+++| ++.+|++|+.||.|++||+.++.
T Consensus 294 ~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 294 GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 889999999985 468999999999999999987 788899999999999999 78899999999999999997655
Q ss_pred ---------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458 284 ---------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 284 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
....+.. +...|.+++| ++++|++++.||.|++||+.+....... ....+..++.|.
T Consensus 368 ~~~~~~~~~~~~~~~~-----h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~ 433 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVE-----HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-----PPRSPSRTYTYI 433 (435)
T ss_dssp STTSCTTTTEEEEECC-----CSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------------------
T ss_pred CccccccchheeeccC-----CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-----CCCCCccceeee
Confidence 4555433 3335999999 7889999999999999999877655443 223344555554
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=275.81 Aligned_cols=265 Identities=21% Similarity=0.347 Sum_probs=209.8
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccc------------cceEEEEEeeCCC
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED 171 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~ 171 (389)
+.+.|.+++|+|++++|++|+.||.|++|++..... ..........+.+|. ..|.+++|+|+++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 457899999999999999999999999999987541 122333567788898 8899999999864
Q ss_pred -cEEEEeeCCCeEEEEeCCCCeeEEEe-----------------------------------cCcccCCCCCCeeEEEee
Q 016458 172 -THLITSSGDQTCVLWDITTGLRTSVF-----------------------------------GGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 172 -~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~ 215 (389)
.+|++++.|+.|++||+.++...... .......|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 58999999999999999765432110 001125789999999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeE-------EeeeccceEEEEEecCC-CEEEEEecCCeEEEEECCCCce---
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRT-------FHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ--- 284 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--- 284 (389)
| ++++|++| .|+.|++||++.....+.. +.+|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 187 ~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 187 S-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp T-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred C-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9 88899998 7999999999854344442 45788999999999998 9999999999999999998876
Q ss_pred -eeEeeccCCCC-------CCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc-ceEEEeecCcCCCCCCC----------
Q 016458 285 -LQVYYQQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGR---------- 345 (389)
Q Consensus 285 -~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~---------- 345 (389)
...+..+.... +...|.+++|+|+|++|++++. +.|++||+.. ++.+..+ ..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHT
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccc
Confidence 45554433210 1125999999999999999998 9999999987 7777777 455432
Q ss_pred -----eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 346 -----ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 346 -----v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+..++|+|++++|++|+.||.|++ ||+.+++...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~i----wd~~~~~~~~ 378 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRM----FDRNTKRDIT 378 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEE----EETTTCCEEE
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEE----EEcCCCccee
Confidence 334999999999999999999999 9999987643
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-38 Score=279.18 Aligned_cols=251 Identities=15% Similarity=0.056 Sum_probs=200.6
Q ss_pred CCCcEEEEEECCCC---------cEEEE-------------------ecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 108 PCAWVMTCAFSPTG---------QSVAC-------------------GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 108 ~~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
..+.|.+++|+|++ ++||+ ++.|+.|+||++..+.. .......+..|.+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~---~~~~~~~l~~~~~ 208 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL---HCVKVQTIVHSFG 208 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC---CEEEEEEEEECCC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC---CceEEEEEEecCC
Confidence 45667777777765 55555 55788999999976431 1111234567788
Q ss_pred ceEEEEEeeCC-----CcEEEEeeCCCeEEEEeCCCCeeE-----------EEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 160 YVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTGLRT-----------SVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 160 ~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
.|.+++|+|++ ..+|++++.||+|++||+..+... ..+ ..|...|.+++|++ + ..|+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-----~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-----SLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-----CCTTTCEEEEEESS-S-SEEE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-----EcCCCCEEEEEecC-C-CeEE
Confidence 99999999962 268999999999999999876421 123 57889999999997 4 4799
Q ss_pred EeeCCCceEEEeCCCCCcceeEEeeeccceEEE--EEecCC-CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
+|+.||+|++||++++..+...+.+|...|.++ +|+|++ .+|++++.|++|++||+++++....+..+... ..+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v 358 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNL 358 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---Ccc
Confidence 999999999999997655667788999999999 578887 89999999999999999988776655433211 137
Q ss_pred eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.+++|+|+++.+++++.|+.|++||++++..+..+ .+|.+.|++++|+|+|++|++|+.||+|++ |++..+
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~l----wd~~~~ 429 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRETTITAIGVSRLHPMVLAGSADGSLII----TNAARR 429 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECSSCEEEEECCSSCCBCEEEETTTEEEC----CBSCSS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCCCceEEEEeCCCCCeEEEEECCCEEEE----EechHh
Confidence 88999999999999999999999999998877777 689999999999999999999999999999 998665
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=285.67 Aligned_cols=260 Identities=18% Similarity=0.255 Sum_probs=213.3
Q ss_pred EEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC--CCcEEEEeeCC
Q 016458 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGD 180 (389)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d 180 (389)
..+.+|.+.|++++|+|++++|++|+.||.|++|++..+. ......+.+|.+.|.+++|+|+ + .++++|+.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~D 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETT
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCC-CEEEEEeCC
Confidence 4567899999999999999999999999999999997422 2356778899999999999987 5 789999999
Q ss_pred CeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCC--CcEEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEE
Q 016458 181 QTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNT 255 (389)
Q Consensus 181 g~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~ 255 (389)
|.|++||+.++. ....+ ..|...|.+++|+| + ++++++|+.||.|++||++... .....+.+|...|.+
T Consensus 77 g~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp SCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred CeEEEEECCCCcccccccc-----cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 999999999986 55555 67999999999999 5 8899999999999999998762 345567789999999
Q ss_pred EEEec-------------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC---CCEEEEEecCC
Q 016458 256 VKFFP-------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNG 319 (389)
Q Consensus 256 ~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg 319 (389)
++|+| ++.+|++|+.||.|++||++++.......... ..+...|++++|+|+ +++|++|+.||
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 99999 58999999999999999998875332221111 223446999999999 89999999999
Q ss_pred cEEEEEcccceEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 320 DCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 320 ~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.|++||+.++..... .......|...|++++|+|+|++|++++.||.|++ |++.++
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v----wd~~~~ 286 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL----WKENLE 286 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC----CBCCSS
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE----EecCCC
Confidence 999999988642111 11111568899999999999999999999999999 999854
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=247.63 Aligned_cols=268 Identities=15% Similarity=0.234 Sum_probs=222.2
Q ss_pred CCCCcccCCCcceeeeec--ccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458 46 GRAPVSFGPTDLVCCRTL--QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (389)
+.....|+....++.+.+ .+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++.+ ++..
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~ 121 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence 445677888887777765 467889999999999999999999999999999999999999999988877655 5779
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
+++++.++.+++|+..... .....+.+|...+..+.+.+++ .++++++.||.|++||+.+++...... ....
T Consensus 122 l~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 193 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAE------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-QTFT 193 (318)
T ss_dssp EEEEETTSEEEEEETTSSS------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-EEEC
T ss_pred EEEEecCCceEeeecCCCc------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccce-eeec
Confidence 9999999999999987643 3567788999999999999997 789999999999999998765322111 0115
Q ss_pred CCCCCeeEEEeeCCCCcEEE--EeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEEC
Q 016458 204 GHTADVLSVSISGSNSRMFV--SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDI 279 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~ 279 (389)
.+...|.++.++|.+..++. +++.++.|++||.+.. ... ....+...+..+.|+|++..+++++ .|+.|++||+
T Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 67788999999997666654 5667899999999866 333 3445778899999999999887755 7999999999
Q ss_pred CCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
++++.+..+..+. ..|++++|+|+|++|++|+.||.|+|||+....
T Consensus 272 ~~~~~~~~l~gH~-----~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 272 PTMAKVAELKGHT-----SRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEEECCCS-----SCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCcEEEEEcCCC-----CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999988876543 359999999999999999999999999987543
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-34 Score=252.11 Aligned_cols=270 Identities=15% Similarity=0.188 Sum_probs=222.2
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++ ....+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~ 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGS 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCe-------EEEEEECCC
Confidence 3678889999999999999999888887754 8999999999977 677789999999998754 444454444
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTR 237 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~ 237 (389)
.+.+++|+|++..++++++.++.|++||+.+++....+ . +...+.+++|+| +++.+ ++++.++.|++||++
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-----K-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----E-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-----e-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 89999999998555566667899999999999888776 2 345789999999 55544 788889999999998
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEE-EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
+. +....+..+ ..+.+++|+|++++| ++++.++.|++||+++++....+... ..+.+++|+|++++|++++
T Consensus 147 ~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 147 TK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE------AAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp TT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS------SEEEEEEECTTSSEEEEEE
T ss_pred CC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC------CCccceEECCCCCEEEEEe
Confidence 77 666666654 457999999999887 57778999999999998777665432 2488999999999999888
Q ss_pred ---cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE-EeeeCCCeeEEeecceecccCccc
Q 016458 317 ---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 317 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.++.|++||+.+++.+..+ ..|. .+.+++|+|++++| ++++.|+.|++ ||+.++++.
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~----~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v----~d~~~~~~~ 279 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARI----PVGP-DPAGIAVTPDGKKVYVALSFXNTVSV----IDTATNTIT 279 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEE----ECCS-SEEEEEECTTSSEEEEEETTTTEEEE----EETTTTEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEE----ecCC-CccEEEEccCCCEEEEEcCCCCEEEE----EECCCCcEE
Confidence 6899999999999988887 3443 57899999999987 67788999999 999988764
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.5e-36 Score=257.62 Aligned_cols=249 Identities=10% Similarity=0.111 Sum_probs=207.9
Q ss_pred eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc-EEEEeeCCCeEE
Q 016458 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTCV 184 (389)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~ 184 (389)
..|.+.|.+++|+|++++|++++.||.|++|++..+. ..........|...|.+++|+|++ . ++++++.||.|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----ccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEE
Confidence 4688899999999999999999999999999998643 111234556899999999999997 7 899999999999
Q ss_pred EEeC-CCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCC---------CCcceeEEeeeccc
Q 016458 185 LWDI-TTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEGD 252 (389)
Q Consensus 185 iwd~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~ 252 (389)
+||+ .++.. ..+ .. |...|.+++|+| ++++++++.|+.|++||++. . .++..+. |...
T Consensus 83 ~wd~~~~~~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~ 152 (342)
T 1yfq_A 83 KVDLIGSPSF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNK 152 (342)
T ss_dssp EECSSSSSSE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCC
T ss_pred EEEeccCCce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCc
Confidence 9999 87765 344 46 899999999998 78999999999999999986 4 4444555 8889
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCC-CceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccc-
Q 016458 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA- 329 (389)
Q Consensus 253 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~- 329 (389)
|.+++|+|++ +++++.|+.|++||+++ +........ ..+...+.+++|+| +++++++++.||.|++|++...
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9999999887 99999999999999998 554322221 12233599999999 9999999999999999999876
Q ss_pred -----eEEEeecCcCCCC---------CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 330 -----KVVLNLGSLQNSH---------EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 330 -----~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+....+ ..| ...|.+++|+|++++|++++.||.|++ ||+.+++..
T Consensus 228 ~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v----wd~~~~~~~ 286 (342)
T 1yfq_A 228 DDYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC----WNLQTRKKI 286 (342)
T ss_dssp CSTTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE----EETTTTEEE
T ss_pred cccccccceee----ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE----EcCccHhHh
Confidence 666666 344 449999999999999999999999999 999988754
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.4e-36 Score=264.33 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=175.8
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee--------CCCcEEEEeeCCCeEEEEeCC
Q 016458 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--------DEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 118 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~ 189 (389)
.+++.+|++++.|++|++||...+... .......+.+|.+.|.+++|+| ++ ++|++++.|++|++||+.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECC
Confidence 345668999999999999999874311 1112345679999999999998 54 799999999999999999
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce------------------------eE
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------RT 245 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------~~ 245 (389)
++.....+ ..|...+.+++|+|.+.++|++++.||.|++||+++..... ..
T Consensus 175 ~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 175 DEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp TTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred CCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 88777766 57889999999999666789999999999999998763211 11
Q ss_pred EeeeccceEEEEEe-cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-------------CCCCCeeEEEeCC--CC
Q 016458 246 FHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPHVTSIAFSI--SG 309 (389)
Q Consensus 246 ~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~--~~ 309 (389)
..+|...+.++.|+ |+++.|++++.|+.+++||+..+.....+..+... ..........|+| ++
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 23567788999987 79999999999999999999877655444322111 0001122233433 34
Q ss_pred CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
.++++|+.||.|++||+.+++....+ ..|..+|.+++|+|||++||+++.||.+.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 46777888999999999998887777 67888999999999999999999877544
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=257.90 Aligned_cols=287 Identities=19% Similarity=0.256 Sum_probs=202.6
Q ss_pred cccCcEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC---CcEEEEecCCCcEEEEeCCC
Q 016458 65 GHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 65 ~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~ 140 (389)
+|.+.|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.+|.|++||+..
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6999999999999 77899999999999999999998887776 5677999999984 45999999999999999987
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecC----------cccCCCCCCe
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGG----------EFQSGHTADV 209 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~v 209 (389)
+. ....+..|...|.+++|+|++..++++++.||.|++||++++. ....+.. .....|...|
T Consensus 176 ~~-------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 176 GS-------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SC-------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred cc-------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 54 5567788999999999999986679999999999999998765 2222210 1114678899
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCce
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
.+++|+| ++.+|++++.||.|++||+++.. .......+ ...+........+..+++++.|+.|++||+.+++.
T Consensus 249 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 249 NGLCFTS-DGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred eEEEEcC-CCCEEEEecCCCeEEEEECCCCc-cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 9999999 88999999999999999999873 33222211 11222222233456677888899999999999998
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeeeC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSW 363 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 363 (389)
+..+..+.. .|++++|+|++++|++++.||.|++||+.+++.+.... .+. ....+.+ +...+.+++.
T Consensus 327 ~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 327 ITMLKGHYK-----TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD----ETT---TKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp EEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred eeeeccCCC-----eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC----ceE---eccccccccceeecccCc
Confidence 888765443 59999999999999999999999999999988776542 221 1122333 3445667778
Q ss_pred CCeeEEeecceecc
Q 016458 364 DTNLKVNLGFWRVQ 377 (389)
Q Consensus 364 dg~i~i~~~~W~~~ 377 (389)
|+.+++ |+..
T Consensus 395 ~~~~~~----W~~~ 404 (408)
T 4a11_B 395 EGGTSA----WSHP 404 (408)
T ss_dssp --------------
T ss_pred cCceee----cCCc
Confidence 999999 9765
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.8e-36 Score=258.12 Aligned_cols=248 Identities=10% Similarity=0.081 Sum_probs=193.4
Q ss_pred eecccccCcEEEEEEcCCCCeEEEE-----------ecCCcEEEEeCCCCCeeEEE---------eeCCCcEEEEEECCC
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIVSA-----------SQDGRLIVWNALTSQKTHAI---------KLPCAWVMTCAFSPT 120 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~~~-----------~~dg~v~iw~~~~~~~~~~~---------~~~~~~v~~~~~~~~ 120 (389)
..|.+|...|.++++++ +.+++| +.|+.+++|++.+....... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 35788999999998765 466655 45778999998765432221 123356899999999
Q ss_pred CcEEEEe--cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 121 GQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 121 ~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
|++++++ +.|+.|+|||+.+.. ....+ .|.+.|.+++|+|++ .++++++.+ .+++|+..++.......
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~-------~~~~~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLT-------EKFEI-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKT 214 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTE-------EEEEE-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEeECCCCc-------EEEEe-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeee
Confidence 9998654 478999999998754 34444 477889999999998 678887754 56667766666554332
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCC----ceEEEeCCCCCc---ceeEEeeeccceEEEEEecCCCEEEEEecC
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
. ..|...|.+++|+| ++.++++++.|+ .+++||+..... ....+.+|..+|++++|+|+|++|++|+.|
T Consensus 215 ~---~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 215 D---FDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp C---CCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred c---CCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 1 46788899999999 888999988887 588898876522 234567788999999999999999999999
Q ss_pred CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
+.|++||+++++.+..+... |..+|++++|+|||++|++|+.|++|+|||+..
T Consensus 291 ~~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQA----HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CEEEEEECCCCcEEEEecCc----ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999888776432 334699999999999999999999999999864
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.4e-34 Score=237.05 Aligned_cols=304 Identities=16% Similarity=0.182 Sum_probs=208.7
Q ss_pred ccCCCcceeeeecccccCc----EEEEEEcCCCC---eEEEEecCCcEEEEeCCCC---CeeEEEeeCCCcEEEEEECCC
Q 016458 51 SFGPTDLVCCRTLQGHAGK----VYSLDWTSERN---RIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPT 120 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~----v~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~ 120 (389)
...|..++.+.+|+.-.+. +.++-|-..+- .+++++. ..|++|+..++ +.+++...|..+|..+.+.|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 97 (356)
T 2w18_A 19 SINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPD 97 (356)
T ss_dssp -----CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTT
T ss_pred CcCcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCc
Confidence 3466778888888877653 66777765443 6777776 58999999998 889999999999999999997
Q ss_pred CcEEEEecC-C-CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee--CCCeEEEEeC-CCCeeEE
Q 016458 121 GQSVACGGL-D-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDI-TTGLRTS 195 (389)
Q Consensus 121 ~~~l~~~~~-d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~ 195 (389)
...|++..- + ..-.++.+.-... ...........+|...|..+ +++ +++.+++ .|+.|++|++ .+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~v~sla~spd-~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG~~~~ 172 (356)
T 2w18_A 98 VYNLVCVALGNLEIREIRALFCSSD-DESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDGGGKE 172 (356)
T ss_dssp CCSCEEEEECSSSEEEEEEECC-------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred ccceeeeeeccccccceEEEEECCC-ccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCCceee
Confidence 654443221 1 1111222221110 00111222224455555543 443 5555533 5999999999 4477766
Q ss_pred EecCcccCCCCCCeeEEEeeC--CCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc---ceEEEEEecCCCEE-----
Q 016458 196 VFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DVNTVKFFPDGNRF----- 265 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l----- 265 (389)
.+ ..|...+..++|++ .++.+|++++.|++|+|||++++ +.+..+.+|.. .+.+++|+|+|.++
T Consensus 173 s~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 173 NQ-----FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp EE-----EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred ee-----ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 66 56777777777776 46789999999999999999988 78888876543 57788999999886
Q ss_pred -------EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458 266 -------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 338 (389)
Q Consensus 266 -------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (389)
++|+.|++|++||..+++.+..+.......+...+.+..+ ++.++++|+.|++|+|||+.+++.+.++
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL--- 321 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL--- 321 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE---
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe---
Confidence 5678899999999999987765532211122222333333 4789999999999999999999999999
Q ss_pred CCCCCCCee-EEEECCCCCeEEeeeCCCeeEEeecceec
Q 016458 339 QNSHEGRIT-CLGLSADGSALCTGSWDTNLKVNLGFWRV 376 (389)
Q Consensus 339 ~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~~~~W~~ 376 (389)
.+|...+. +++|+|||++|++|+.|++|+| ||+
T Consensus 322 -~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl----Wd~ 355 (356)
T 2w18_A 322 -PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV----YHY 355 (356)
T ss_dssp -CCC--CCCCEEEECSSSSEEEEECTTSCEEE----EEE
T ss_pred -cCCCCCeEEEEEECCCCCEEEEEECCCcEEE----ecC
Confidence 67876554 6899999999999999999999 986
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7.7e-34 Score=247.61 Aligned_cols=307 Identities=15% Similarity=0.125 Sum_probs=239.1
Q ss_pred cCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCc
Q 016458 44 SQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 122 (389)
..+.....|+....++...+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS
T ss_pred CCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCC
Confidence 3455677888888888888888865 8999999999976 677789999999999999988887765 799999999999
Q ss_pred EEEE-ecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 123 SVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 123 ~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
+|++ +..++.|++||+.+++ ....+.. ...+.+++|+|++..++++++.++.|++||+.+++....+
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---- 154 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNT-------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---- 154 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred EEEEEECCCCEEEEEECCCCe-------EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE----
Confidence 8754 5567999999998754 3344443 4568999999998555578888999999999999888877
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEE
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD 278 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d 278 (389)
.. ...+.+++|+|++..++++++.++.|++||+++. .....+. +...+.+++|+|++++|++++ .++.|++||
T Consensus 155 -~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 -SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp -EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred -ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 23 3457999999944444477888999999999876 5555544 566789999999999999888 689999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE-EEEecCCcEEEEEcccceEEEeecCcCCCCCCC------------
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR------------ 345 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------ 345 (389)
+.+++.+..+.... .+.+++|+|+++++ ++++.|+.|++||+.+++....+. .|..+
T Consensus 231 ~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 300 (391)
T 1l0q_A 231 TGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA----VGKNPYASGQFIGSIPV 300 (391)
T ss_dssp TTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEECCSSCEEECSS
T ss_pred CCCCeEEEEEecCC------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE----CCcCCCccceeeecccc
Confidence 99988777665532 27899999999987 566789999999999999888773 33222
Q ss_pred -----eeEEEECCCC--------CeEEeeeCCCeeEEeecceecccCccc
Q 016458 346 -----ITCLGLSADG--------SALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 346 -----v~~~~~~~~~--------~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+......... ..+...+.|...++ |++.+|...
T Consensus 301 ~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~----W~~~~g~~~ 346 (391)
T 1l0q_A 301 QPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK----WDFGDGSSS 346 (391)
T ss_dssp CCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE----EECSSSCEE
T ss_pred cccccccccccccccccccccceEEEEeCCCCceEEE----EECCCCccc
Confidence 1112221111 24566667888899 999888643
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=264.37 Aligned_cols=254 Identities=10% Similarity=0.110 Sum_probs=204.6
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC-----cEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-----WVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.|...|.+++|||+|.+||+++.||.|++||... .+..+. |.. .+.+++|||+|++|++|+.||+|++|++.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999544 555556 554 49999999999999999999999999998
Q ss_pred CCCCCCCCCcceeee----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE---EEecCcccCCCCCCeeEE
Q 016458 140 SPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~ 212 (389)
.+............+ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. ..|...|.++
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sv 232 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDL 232 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCE
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEE
Confidence 743111111123444 6788899999999976 889999999999999887732 3331 3677899999
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEE--ecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
+|+ ++.+++++ ++.|++||+... .......+|...+..++| +|++..|++++.||+ ++|...
T Consensus 233 aFs---g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------- 296 (588)
T 2j04_A 233 KIV---DYKVVLTC-PGYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------- 296 (588)
T ss_dssp EEE---TTEEEEEC-SSEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------
T ss_pred EEE---CCEEEEEe-CCeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------
Confidence 998 36788876 699999999866 332333379999999999 999999999999999 999977
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
.++++|++..+++. |+++++|+..... ...+ .+ ...|.+++|+|||+.+|+++.
T Consensus 297 -----------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~----~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 -----------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY----ET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -----------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS----CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred -----------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee----cc-ceEEEEEEECCCCCEEEEEEe
Confidence 14589999877764 8999999975544 3233 33 667999999999999998875
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=7e-34 Score=243.89 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=185.9
Q ss_pred EEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCc
Q 016458 93 VWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 172 (389)
Q Consensus 93 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (389)
+|++.+.+.+.....|...|.+++|+|++++|++|+.++ +++|++.... .....+...+..+.+.++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCE
Confidence 566677777777788999999999999999999998775 7899987632 222222235777888888755
Q ss_pred EEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccc
Q 016458 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (389)
Q Consensus 173 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 252 (389)
++++++.|+.|++||..+++.+..+ .+...|.++.+++ + .++++ .++.|++||+.+..+.+..+.. +
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred EEEEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 5578888999999999999988877 3566899999986 3 34444 4789999999876344444443 4
Q ss_pred eEEEEEecCCCEEEE--EecCCeEEEEECCCCce----------------eeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 253 VNTVKFFPDGNRFGT--GSDDGTCRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 253 i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
...+++++ .++++ |+.||.|++||++++.. ...+. .|...|++++|+|+|++|++
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-----AHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-----CCSSCEEEEEECTTSSEEEE
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-----ccCCceEEEEECCCCCEEEE
Confidence 44566777 56666 58999999999997651 33333 33446999999999999999
Q ss_pred EecCCc-EEEEEcccceEEEeecCcCCC-CCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 315 GYSNGD-CYVWDTLLAKVVLNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 315 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
|+.||. |++||+.+++.+..+. .+ |...|++++|+|++++|++++.|+.|++ |++.++..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~i----w~~~~~~~ 274 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHV----FEIFNDQD 274 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEECTTSCEEEEEETTCEEEE----EESSCCSC
T ss_pred EeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEECCCCCEEEEEECCCEEEE----EEccCCCC
Confidence 999998 9999999999998883 24 9999999999999999999999999999 99987653
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=244.38 Aligned_cols=261 Identities=15% Similarity=0.189 Sum_probs=211.9
Q ss_pred EeCCCCCeeEEEeeCCCcEEEEEECCC---CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCC
Q 016458 94 WNALTSQKTHAIKLPCAWVMTCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 170 (389)
Q Consensus 94 w~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (389)
|+....+.+..+..|.+.|++++|+|+ |++|++|+.||.|++|++.... ......+.+|...|.+++|+|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC
Confidence 455666777788899999999999999 6999999999999999998622 12346788899999999999987
Q ss_pred CcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe--eCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI--SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 171 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
.+|++++.||.|++||+.++...... .|...|.+++| +| ++.+|++++.||.|++||+++. +.+..+..
T Consensus 99 -~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 169 (368)
T 3mmy_A 99 -SKVFTASCDKTAKMWDLSSNQAIQIA------QHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-NPMMVLQL 169 (368)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-SCSEEEEC
T ss_pred -CEEEEEcCCCcEEEEEcCCCCceeec------cccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-cEEEEEec
Confidence 78999999999999999999877754 68899999999 76 7889999999999999999987 67777775
Q ss_pred eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE----EEEEecCCcEEEE
Q 016458 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL----LFAGYSNGDCYVW 324 (389)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~ 324 (389)
+. .+.++.+. ...+++++.++.+.+|+++............ ......++++.++... +++++.||.|++|
T Consensus 170 ~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 PE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP---LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS---CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred CC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc---ccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 54 56666665 4589999999999999998765544433221 2223566666555443 9999999999999
Q ss_pred Ecccc---eEEEeecCcCCCCCC------------CeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 325 DTLLA---KVVLNLGSLQNSHEG------------RITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 325 d~~~~---~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
|+... .....+ ..|.. .|++++|+|++++|++++.||.|++ ||+.+++..
T Consensus 244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i----wd~~~~~~~ 308 (368)
T 3mmy_A 244 YINPPNPAKDNFTF----KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF----WDKDARTKL 308 (368)
T ss_dssp ESSCSCHHHHSEEE----ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE----EETTTTEEE
T ss_pred ecCCCCccccceee----eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE----EECCCCcEE
Confidence 99876 444455 45554 7999999999999999999999999 999988654
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.3e-34 Score=251.93 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=176.5
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeE-----EEeeCCCcEEEEEECC--------CCcEEEEecCCCc
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-----AIKLPCAWVMTCAFSP--------TGQSVACGGLDSV 132 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~ 132 (389)
|...+....+++++.+|++++.|++|+|||..+++... .+.+|.+.|.+++|+| ++++|++|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 44444444455566789999999999999998886543 2457899999999997 7899999999999
Q ss_pred EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC-------------
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG------------- 199 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------- 199 (389)
|+|||+..+. .......|...+.+++|+|++..+|++++.|+.|++||+.+++.......
T Consensus 168 v~~Wd~~~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 168 LIIWRLTDEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp EEEEEEETTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred EEEEECCCCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 9999997644 45667788899999999998767899999999999999998765433211
Q ss_pred -------cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEE----------------
Q 016458 200 -------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV---------------- 256 (389)
Q Consensus 200 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~---------------- 256 (389)
.....|...+.++.|++.++..+++++.|+.+++||+... +....+..|...+..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSS
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcce
Confidence 0113577889999998668999999999999999999876 4444444444333332
Q ss_pred --EEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 257 --KFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 257 --~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
.|+| ++.++++|+.||.|++||+.++........+.. +|.+++|+|||++||+++.+| +.+|.+.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3333 344677888999999999999988777655443 599999999999999998765 6666653
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-33 Score=245.15 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=202.1
Q ss_pred ecccccCcEEEEEEcCCCCeE-EEEecCCcEEEEeCC--CCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 62 TLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNAL--TSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
...+|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .+...|.+++|+|++++|++|+.+|.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456889999999999999996 899999999999999 888888876 566889999999999999999999999999
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 213 (389)
++....... .....+.+|...|.+++|+|+ + .+|++++.|+.|++||+.++.....+. .+|...|.+++
T Consensus 177 ~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~ 248 (450)
T 2vdu_B 177 DINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSIC 248 (450)
T ss_dssp ETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEEE
T ss_pred ecCCccccc---ccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEEE
Confidence 998754211 023356789999999999998 6 799999999999999999988777642 57899999999
Q ss_pred eeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-------------------------ccceEEEEEecCCCEEEEE
Q 016458 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------------------EGDVNTVKFFPDGNRFGTG 268 (389)
Q Consensus 214 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~l~~~ 268 (389)
|+ ++.+|++++.|+.|++||++++ +.+..+..+ ...|.+++|+|++++|+++
T Consensus 249 ~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 249 CG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp EC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred EC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 99 7889999999999999999987 666666532 3568999999999999999
Q ss_pred e-cCCeEEEEEC--CCC---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec------CCcEEEEEcc
Q 016458 269 S-DDGTCRLFDI--RTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL 327 (389)
Q Consensus 269 ~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~ 327 (389)
+ .|+.|++|++ ..+ .....+..+ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9 8999999999 555 334444332 24999999996544444443 4558888765
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.3e-33 Score=237.08 Aligned_cols=279 Identities=17% Similarity=0.240 Sum_probs=196.0
Q ss_pred cCCCCCcccCCCcc----eeeeecccccCcEEEEEEcC--CCCeEEEEecCCcEEEEeCCCC---------CeeEEEeeC
Q 016458 44 SQGRAPVSFGPTDL----VCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTS---------QKTHAIKLP 108 (389)
Q Consensus 44 ~~~~~~~~~~~~~~----~~~~~l~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~---------~~~~~~~~~ 108 (389)
..+.....|+.... .....+.+|.++|++++|+| ++++|++|+.||.|++||+.++ +....+..|
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T 3f3f_A 30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109 (351)
T ss_dssp ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc
Confidence 34455666765533 67788899999999999999 6899999999999999999887 457777889
Q ss_pred CCcEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcce-------eeecccccceEEEEEeeC--CCcEEEEe
Q 016458 109 CAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVS-------RMLSGHKGYVSCCQYVPD--EDTHLITS 177 (389)
Q Consensus 109 ~~~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~--~~~~l~~~ 177 (389)
...|.+++|+|+ +.+|++++.||.|++||+..+..... .... .....|...+.++.|+|+ .+.+++++
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS-WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC-CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc-ccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 999999999999 99999999999999999987552211 1110 111267889999999997 34789999
Q ss_pred eCCCeEEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCC----cEEEEeeCCCceEEEeCCCCCcceeEEeeecc
Q 016458 178 SGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251 (389)
Q Consensus 178 ~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 251 (389)
+.++.+.+|+...+.. ...+ ..|...|.+++|+| ++ ++|++++.||.|++||++.. ........+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~ 261 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKL-----PGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEK-LSPLASEESLT 261 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEEC-----CCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEEC-C----------
T ss_pred cCCCcEEEEccCCCceeeeeec-----CCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCC-cCccccCCccc
Confidence 9999998888887765 4444 67899999999999 55 89999999999999999876 33223333333
Q ss_pred ceEEEEEecCCCEEEEEe----cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 252 DVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
.......++....+..+. ....+.+|+....+.+..+..+ ...|++++|+|++++|++++.||.|++||+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-----NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp -----------------------------CCSEEEEEEEEECTT-----SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceeccCCCcccccccccccccccceeeeecccccccEEEEEecc-----cccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 344444444444444333 3344556665555555555433 3359999999999999999999999999999
Q ss_pred cceEEEee
Q 016458 328 LAKVVLNL 335 (389)
Q Consensus 328 ~~~~~~~~ 335 (389)
+++....+
T Consensus 337 ~~~~~~~~ 344 (351)
T 3f3f_A 337 YSNEFKCM 344 (351)
T ss_dssp TTSCEEEE
T ss_pred cCcchhhe
Confidence 87655444
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.4e-31 Score=235.04 Aligned_cols=285 Identities=11% Similarity=0.073 Sum_probs=223.5
Q ss_pred ccCcEEEEE---EcCCCCeEEEEe--------------cCC--cEEEEeCCCC--CeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 66 HAGKVYSLD---WTSERNRIVSAS--------------QDG--RLIVWNALTS--QKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 66 h~~~v~~~~---~~~~~~~l~~~~--------------~dg--~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
....+..++ |+|+++.++..+ .++ .|..+|..++ +.+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 345678888 888877665432 233 4444444434 4445555443 46699999988888
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCccee-----eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
++++.++.|++||+.++. ... .+.+|...|.+++|++++ .++++++.|+.|++||+.+++....+
T Consensus 138 ~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~-- 207 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQ-------TVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATV-- 207 (433)
T ss_dssp EEBTTSSSEEEEETTTCC-------EEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEE--
T ss_pred EEeCCCCeEEEEECCCCe-------EeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEE--
Confidence 888889999999998754 222 345788899999998886 78999999999999999999888887
Q ss_pred cccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--------c
Q 016458 200 EFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--------D 270 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~ 270 (389)
..+...+.+++|+| +++.+ ++++.++.|++||+++. ..+..+.. ...+.+++|+|+++++++++ .
T Consensus 208 ---~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 208 ---DLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp ---ECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred ---cCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 57788999999999 55555 56668999999999876 55555554 45589999999999999888 4
Q ss_pred CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE-EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
||.|++||+.+++....+.... .+.+++|+|+++.+ ++++.++.|++||+.+++....+ .+...+.++
T Consensus 282 dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~~~~~~ 350 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-----PVFDKPNTI 350 (433)
T ss_dssp CEEEEEEETTTTEEEEEEEEEE------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-----ECSSSEEEE
T ss_pred CCeEEEEECCCCcEEeeccCCC------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-----cCCCCCCeE
Confidence 8899999999887766653322 37899999999755 55688999999999999888777 356789999
Q ss_pred EECCCCCeEEeeeC---------------CCeeEEeecceecccCccc
Q 016458 350 GLSADGSALCTGSW---------------DTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 350 ~~~~~~~~l~~~~~---------------dg~i~i~~~~W~~~~~~~~ 382 (389)
+|+|+|++|++++. ||.|++ ||+.+++..
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~----~d~~~~~~~ 394 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV----IDTTTDTVK 394 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE----EETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEE----EECCCCcEE
Confidence 99999998888876 579999 999988754
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=233.18 Aligned_cols=255 Identities=12% Similarity=0.015 Sum_probs=197.0
Q ss_pred ccCCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC---------CCCeeEEEe-eCCCcE
Q 016458 43 RSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL---------TSQKTHAIK-LPCAWV 112 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~---------~~~~~~~~~-~~~~~v 112 (389)
...+.....|+....+....+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. .|...|
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v 128 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI 128 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred ECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence 3344555667776666666665 567888999998 9999999999999654 555454544 566789
Q ss_pred EEEEECC--CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 113 MTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 113 ~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
.+++|+| +++++++++.||.|++||+.++. ..... ..|...+.+++|+|++ .+|++|+.||.|++||++
T Consensus 129 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 129 IYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLS 200 (343)
T ss_dssp EEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESS
T ss_pred EEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence 9999999 99999999999999999998754 23333 3456689999999997 789999999999999999
Q ss_pred CCeeE-EEecCcccCC-CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceE--EEEEecCC
Q 016458 190 TGLRT-SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVN--TVKFFPDG 262 (389)
Q Consensus 190 ~~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~ 262 (389)
++... ..+ .. |...|.+++|+| ++.+|++++ ++.|++||++.. .....+. .|...+. +++|+|++
T Consensus 201 ~~~~~~~~~-----~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 201 SPDQASSRF-----PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp CTTSCCEEC-----CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTS
T ss_pred CCCCCccEE-----eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECCCC
Confidence 99877 566 45 899999999999 888999999 559999999987 4433322 2444444 69999999
Q ss_pred CEEEEEec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC---CCCEEEEEecCCcEEEEEcc
Q 016458 263 NRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 263 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~ 327 (389)
++|++++. |+.|++|++......... .++..++|++ +.+.+++++.||.+.++-..
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEecCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99999998 999999999766544333 1377889998 88899999999999887543
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=9.2e-31 Score=235.61 Aligned_cols=310 Identities=13% Similarity=0.087 Sum_probs=237.8
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeC--CCCCeeEEEeeCCCcEEEEEECC----CCc
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSP----TGQ 122 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~ 122 (389)
...|+....++..++..+.. +.+++|+|+|++|++++.|++|++||+ .+++.+..+.. ...+..++|+| +|+
T Consensus 161 V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~ 238 (543)
T 1nir_A 161 IALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR 238 (543)
T ss_dssp EEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT
T ss_pred EEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC
Confidence 44577777788888874333 899999999999999999999999999 88888888874 45689999999 999
Q ss_pred EEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecc----------cc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 123 SVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 123 ~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
++++++. ++.|.+||..+.+ +...+.. |. ..+..+.++|+++.++++...++.|.+||..+
T Consensus 239 ~l~v~~~~~~~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 239 YTIAGAYWPPQFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp EEEEEEEESSEEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred EEEEEEccCCeEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999885 8999999987644 3344332 22 37889999998878888888999999999988
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEecC-CCE
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPD-GNR 264 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~ 264 (389)
........ ..+...+..+.|+| ++++++ ++..++.|.+||..++ +.+..+.. |.+....+ ++|+ +..
T Consensus 312 ~~~l~~~~----i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 312 IDNLTVTS----IGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp SSSCEEEE----EECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEE
T ss_pred CCcceeEE----eccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccE
Confidence 65443111 13456688899999 666554 5556899999999987 66666653 54433333 4676 666
Q ss_pred EEEEe-cCCeEEEEECCC-------CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-------cCCcEEEEEcccc
Q 016458 265 FGTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-------SNGDCYVWDTLLA 329 (389)
Q Consensus 265 l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~ 329 (389)
++++. .|++|.+||+.+ .+.+..+..+.. .+..+.++|++++|++++ .++.|.+||+.++
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-----CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 66665 689999999988 777777765432 367899999999999987 2679999999988
Q ss_pred eEE-EeecCc----CCCCCCCeeEEEECCCCCeEEeee-----CCCeeEEeecceecccCcccC
Q 016458 330 KVV-LNLGSL----QNSHEGRITCLGLSADGSALCTGS-----WDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 330 ~~~-~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+.. ..+... ...+...+..++|+|+|+.|+++. .|+.|.| ||..++++..
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v----~D~~t~~~~~ 519 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV----VDDKTLKLKA 519 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE----EETTTTEEEE
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE----EECCCceEEE
Confidence 766 332100 024567899999999999998763 4799999 9999998764
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.1e-30 Score=210.79 Aligned_cols=259 Identities=13% Similarity=0.080 Sum_probs=178.9
Q ss_pred CCcccCCCcc---eeeeecccccCcEEEEEEcCCCCeEE-EEecCC---cEEEEeCCCC----CeeEEEeeCCCcEEEEE
Q 016458 48 APVSFGPTDL---VCCRTLQGHAGKVYSLDWTSERNRIV-SASQDG---RLIVWNALTS----QKTHAIKLPCAWVMTCA 116 (389)
Q Consensus 48 ~~~~~~~~~~---~~~~~l~~h~~~v~~~~~~~~~~~l~-~~~~dg---~v~iw~~~~~----~~~~~~~~~~~~v~~~~ 116 (389)
....|+|... ++.+++.+|..+|..+++.||..-|+ ++-.+= .|+..-+... .......++...|..+
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l- 142 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL- 142 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE-
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec-
Confidence 3456777766 89999999999999999999654322 222111 1111111111 1111112233334443
Q ss_pred ECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEee---CCCcEEEEeeCCCeEEEEeCCCC
Q 016458 117 FSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 117 ~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
++++++.+++ .|+.|++|++.... .....+..|...+..++|++ ++ .+|++++.|++|++||+.++
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG------~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDG------GGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTS------CEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTC
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCC------ceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCC
Confidence 5666666643 59999999995421 15566778888899999998 44 78999999999999999999
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEE------------EEeeCCCceEEEeCCCCCcceeEE-----eeeccceE
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMF------------VSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVN 254 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~ 254 (389)
+.+..+... ..+...+.+++|+| ++.++ ++|+.|++|++||..++ +.+..+ .+|...+.
T Consensus 214 k~l~tL~g~--~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~l 289 (356)
T 2w18_A 214 QLLKKMHID--DSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFL 289 (356)
T ss_dssp CEEEEEECC--C---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEE
T ss_pred cEEEEEcCC--CcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeE
Confidence 999988311 11234678889999 77765 56788999999999877 555444 25555544
Q ss_pred EEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 255 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
+..+ ++.++++++.|++|++||+.+++.+..+..+... .+..++|+|||++|++|+.|++|+|||+
T Consensus 290 sg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~----vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 290 EGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ----HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--C----CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC----eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4444 4789999999999999999999999888654332 2456899999999999999999999995
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=9.5e-31 Score=228.86 Aligned_cols=283 Identities=14% Similarity=0.123 Sum_probs=217.1
Q ss_pred cCcEEEEEEcCCCC-eEEEEe----cCC----cEEEEeC--CCCCee--EEEeeCCCcEEEEEECC--------------
Q 016458 67 AGKVYSLDWTSERN-RIVSAS----QDG----RLIVWNA--LTSQKT--HAIKLPCAWVMTCAFSP-------------- 119 (389)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~~~~----~dg----~v~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 119 (389)
...+...+|.+.|. ++++|+ .|| .|++||+ .+++.+ ..+..|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34678888988775 566776 467 8999999 898877 44777877777776654
Q ss_pred CCcEEEEecCC------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC---eEEEEeCCC
Q 016458 120 TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITT 190 (389)
Q Consensus 120 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 190 (389)
.+..++.++.+ +.|++||++.. ....+..|...+.+++|+|++ +.|++++.++ .|++||+.+
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC
Confidence 25556555543 79999999752 245667788999999999998 6788888775 999999999
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCc--eEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 267 (389)
++.... ..+...+.+++|+| +++.|+ +++.++. |++||+++. + ...+..|...+.+++|+|+|++|++
T Consensus 213 g~~~~l------~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 213 GAVRQV------ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp CCEEEE------ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEe------ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEEE
Confidence 887643 35677899999999 666555 6666655 999999865 3 3567778889999999999999988
Q ss_pred Eec-CC--eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC---CcEEEEEcccceEEEeecCcCCC
Q 016458 268 GSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNS 341 (389)
Q Consensus 268 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 341 (389)
++. ++ .|++||+.+++... +... ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+ ..
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~~~-l~~~-----~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l----~~ 352 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAPQR-ITWE-----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL----SS 352 (415)
T ss_dssp EECTTSSCEEEEEETTSSCCEE-CCCS-----SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC----CC
T ss_pred EECCCCCcEEEEEECCCCCEEE-EecC-----CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee----cC
Confidence 886 44 68888988776432 2221 2248899999999999988764 58999999988764 34 34
Q ss_pred CCCCeeEEEECCCCCeEEeeeCCC---eeEEeecceecccCcccC
Q 016458 342 HEGRITCLGLSADGSALCTGSWDT---NLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 342 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~~~~W~~~~~~~~~ 383 (389)
+. .+.+++|+|||++|++++.++ .|.+ |++..+.+..
T Consensus 353 ~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~----~d~~g~~~~~ 392 (415)
T 2hqs_A 353 TF-LDETPSLAPNGTMVIYSSSQGMGSVLNL----VSTDGRFKAR 392 (415)
T ss_dssp SS-SCEEEEECTTSSEEEEEEEETTEEEEEE----EETTSCCEEE
T ss_pred CC-CcCCeEEcCCCCEEEEEEcCCCccEEEE----EECCCCcEEE
Confidence 43 899999999999999998877 7888 9998765543
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=2.1e-29 Score=226.80 Aligned_cols=289 Identities=12% Similarity=0.066 Sum_probs=225.3
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeC--CCCCCCCCCCcce
Q 016458 74 DWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL--NSPTDKDGNLPVS 151 (389)
Q Consensus 74 ~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~ 151 (389)
+|+|++.++++++.|++|.+||..+++.+..+..+.. +..++|+|++++|++++.|+.|.+||+ .+.+ ..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KV 215 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EE
Confidence 4889998999999999999999999999999885544 889999999999999999999999999 4432 44
Q ss_pred eeecccccceEEEEEee----CCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccC------CCCCCeeEEEeeCCCCc
Q 016458 152 RMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQS------GHTADVLSVSISGSNSR 220 (389)
Q Consensus 152 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~ 220 (389)
..+. +...+..++|+| ++ +++++++ .++.|.+||..+++.+..+...... .....+.++.++|.+..
T Consensus 216 ~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 216 AEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp EEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred EEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 4555 345679999999 98 5666666 5899999999999988877431100 01237889999997777
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
++++...++.|.+||.............+...+..+.|+|++++|++++ .++.|.+||+.+++....+..... .+...
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-ph~g~ 372 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-PHPGR 372 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-BCCTT
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-CCCCC
Confidence 8888888999999999876332222234566788999999999876654 689999999999988877754221 12112
Q ss_pred eeEEEeCCC-CCEEEEEe-cCCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-------C
Q 016458 300 VTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-------W 363 (389)
Q Consensus 300 i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~ 363 (389)
...+ ++|+ +..++++. .|+.|.+||+.+ ++.+.++ ..|.+.+..++++|+|++|++++ .
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----EcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 2233 4677 55666664 579999999988 8888988 67888889999999999999987 3
Q ss_pred CCeeEEeecceecccCccc
Q 016458 364 DTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~~~~ 382 (389)
++.|.| ||+.+++..
T Consensus 448 ~~~v~v----~d~~~~~~~ 462 (543)
T 1nir_A 448 SQSVAV----FDLKNLDAK 462 (543)
T ss_dssp HTCEEE----EETTCTTSC
T ss_pred CceEEE----EECCCCCCC
Confidence 789999 999988754
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=7.7e-30 Score=223.09 Aligned_cols=279 Identities=14% Similarity=0.058 Sum_probs=216.2
Q ss_pred CCcccCC--Ccceee--eecccccCcEEEEEEcC--------------CCCeEEEEecC------CcEEEEeCCCCCeeE
Q 016458 48 APVSFGP--TDLVCC--RTLQGHAGKVYSLDWTS--------------ERNRIVSASQD------GRLIVWNALTSQKTH 103 (389)
Q Consensus 48 ~~~~~~~--~~~~~~--~~l~~h~~~v~~~~~~~--------------~~~~l~~~~~d------g~v~iw~~~~~~~~~ 103 (389)
....|+. ...+++ ..+.+|...+..+++++ .+..++.++.+ +.|++||+. +....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 3567777 666655 56889988888888775 15567666654 799999987 45567
Q ss_pred EEeeCCCcEEEEEECCCCcEEEEecCCC---cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC
Q 016458 104 AIKLPCAWVMTCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (389)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 180 (389)
.+..|...+.+++|+|+|+.|++++.++ .|++||+.+++ ...+..|...+.+++|+|++..++++++.+
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~ 244 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKT 244 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence 7788888999999999999999998875 99999998754 234566788899999999985444477666
Q ss_pred Ce--EEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CC--ceEEEeCCCCCcceeEEeeeccceEE
Q 016458 181 QT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNT 255 (389)
Q Consensus 181 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~ 255 (389)
+. |++||+.+++.. .+ ..+...+.+++|+| +++.|++++. ++ .|++||+... . ...+..+...+.+
T Consensus 245 g~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-QV-----TDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQD 315 (415)
T ss_dssp SSCEEEEEETTTCCEE-EC-----CCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEE
T ss_pred CCceEEEEECCCCCEE-eC-----cCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccC
Confidence 54 999999988764 33 46778899999999 7777776665 45 5777788765 2 3445556778899
Q ss_pred EEEecCCCEEEEEecC---CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC---cEEEEEcccc
Q 016458 256 VKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLA 329 (389)
Q Consensus 256 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 329 (389)
++|+|+|++|++++.+ ..|++||+.+++... +.... .+.+++|+|+|++|++++.++ .|++||+. +
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g 387 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTF------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-G 387 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSS------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-S
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCC------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-C
Confidence 9999999999988864 589999999877632 32211 489999999999999888777 79999987 4
Q ss_pred eEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 330 KVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
.....+ ..|.+.|.+++|+|...
T Consensus 388 ~~~~~l----~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARL----PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEEC----CCSSSEEEEEEECCCCC
T ss_pred CcEEEe----eCCCCCCcCCccccccc
Confidence 445566 68899999999999654
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.97 E-value=6.2e-28 Score=205.41 Aligned_cols=283 Identities=14% Similarity=0.146 Sum_probs=204.9
Q ss_pred EEcCCCCe-EEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcc-
Q 016458 74 DWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPV- 150 (389)
Q Consensus 74 ~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~- 150 (389)
.|.+++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.++. .
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-------PK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS-------CE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-------ee
Confidence 45565554 6778889999999999999988888777777 9999999997766655 8899999998754 3
Q ss_pred eeeecccccceEEEEEeeCCCcEEEEeeCC-C--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGD-Q--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
...+..+..+..+++|+|++ ++++++..+ + .|.+||+.+++....+. ......+++|+|++..++++...
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIP------IPYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEE------CCTTEEEEEECTTSSCEEEEEET
T ss_pred EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEE------CCCCccceEECCCCCEEEEEecC
Confidence 44555555665559999998 566655555 3 99999999998887762 33456899999944446666666
Q ss_pred CCc-eEEEeCCCCCcce---eEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCce---eeEeeccCCCCCCCC
Q 016458 228 DST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPH 299 (389)
Q Consensus 228 dg~-i~i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~ 299 (389)
++. |.+|++....... .........+..++|+|++++++++ ..++.|.+||+.+++. +..+... ..
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~------~~ 222 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN------NL 222 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS------SC
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC------CC
Confidence 688 9999988643221 1112334568999999999966555 4689999999998887 5555432 23
Q ss_pred eeEEEeCCCCCEEEEEe-cCCcEEEEEcccceE--EEeecCcCCCCCC---CeeEEEECCCCCeEEeeeC-CCeeEEeec
Q 016458 300 VTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSLQNSHEG---RITCLGLSADGSALCTGSW-DTNLKVNLG 372 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-dg~i~i~~~ 372 (389)
+..++|+|+|+++++++ .++.|.+||+.+++. +..+......+.. ....++|+|||++|++++. ++.|.+
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v--- 299 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV--- 299 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE---
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE---
Confidence 68899999999777665 467899999998877 3333211011122 2356899999998866555 569999
Q ss_pred ceecccCcc
Q 016458 373 FWRVQEGAL 381 (389)
Q Consensus 373 ~W~~~~~~~ 381 (389)
|++....+
T Consensus 300 -~d~~~~~~ 307 (331)
T 3u4y_A 300 -FTISGKVV 307 (331)
T ss_dssp -EETTSCEE
T ss_pred -EEecCCcc
Confidence 99987654
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.5e-28 Score=231.61 Aligned_cols=286 Identities=10% Similarity=0.099 Sum_probs=215.2
Q ss_pred cCcEEEEEEcCCCCeEEEEec-CC-----cEEEEeCCCCCeeEEEeeCCC------------------------cEEEEE
Q 016458 67 AGKVYSLDWTSERNRIVSASQ-DG-----RLIVWNALTSQKTHAIKLPCA------------------------WVMTCA 116 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 116 (389)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999987776655432 378899
Q ss_pred ECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE
Q 016458 117 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 196 (389)
Q Consensus 117 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 196 (389)
|+|+|++|++++. +.|++||+.++.. +....+..|...+..++|+|+| +.|+.++ ++.|++||+.++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence 9999999999886 9999999987510 0123455677889999999998 5677666 46999999998876654
Q ss_pred ecCcccCCCCC----------------CeeEEEeeCCCCcEEEEeeCCC-------------------------------
Q 016458 197 FGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS------------------------------- 229 (389)
Q Consensus 197 ~~~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg------------------------------- 229 (389)
. ..+.. .+.++.|+| +++.|++++.|+
T Consensus 188 ~-----~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 188 T-----ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp C-----CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred c-----cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 4 22222 147899999 777777776655
Q ss_pred --ceEEEeCCC-CCcceeEEe--eeccceEEEEEecCCCEEEEEec-----CCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 230 --TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 230 --~i~i~d~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
.|.+||+.+ . +...... .|...+..++| |||++|++++. +..|++||+.+++....+..... .....
T Consensus 262 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~ 338 (741)
T 2ecf_A 262 QVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-TWVPL 338 (741)
T ss_dssp EEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-SCCCC
T ss_pred eeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-CcCCc
Confidence 788999987 5 3332222 46778999999 99999987764 57899999999887666544321 11112
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEE-EECCCCCeEEee-eCCC--eeEEeecce
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTG-SWDT--NLKVNLGFW 374 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~-~~dg--~i~i~~~~W 374 (389)
+..++|+|||+++++++.+|.++||.+. .+. ...+ ..|...|..+ .|+|+|+.|+.. +.++ .++| |
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l----~ 409 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQI----Y 409 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE----E
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE----E
Confidence 4678999999999999999988888765 344 5566 5677788887 599999877654 4455 8899 9
Q ss_pred eccc
Q 016458 375 RVQE 378 (389)
Q Consensus 375 ~~~~ 378 (389)
++..
T Consensus 410 ~~~~ 413 (741)
T 2ecf_A 410 AVPL 413 (741)
T ss_dssp EEET
T ss_pred EEEc
Confidence 9864
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.97 E-value=3.7e-27 Score=202.41 Aligned_cols=274 Identities=14% Similarity=0.100 Sum_probs=213.3
Q ss_pred ccCcEEEEEEcCCCCeEEEEec-------CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEe
Q 016458 66 HAGKVYSLDWTSERNRIVSASQ-------DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFN 137 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~ 137 (389)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.... .+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4456889999999998888774 5689999999999888887654 478899999999655 455579999999
Q ss_pred CCCCCCCCCCCcceeeeccccc---------ceEEEEEeeCCCcEEEEe-eCCCeEEEEeCCCCeeEEEecCcccCCCCC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKG---------YVSCCQYVPDEDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 207 (389)
..+++ ....+..+.. .+.++.|+|++..+++++ +.++.|.+||+.+++....+ ..+..
T Consensus 118 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~ 185 (353)
T 3vgz_A 118 AKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-----QNTGK 185 (353)
T ss_dssp TTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-----CCCCT
T ss_pred CCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-----cCCCC
Confidence 98754 3333433321 268899999985444444 35889999999999988887 33455
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee----eccceEEEEEecCCCEEEEEec-CCeEEEEECCCC
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG 282 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 282 (389)
.+..++|+| +++.+++++.++.|.+||..+. +....+.. +...+..++|+|+++++++++. ++.|.+||+.++
T Consensus 186 ~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 186 MSTGLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp TCCCCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ccceEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 688899999 7788888888999999999877 55555543 4456788999999998777665 599999999999
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
+....+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+. . ...+.+++|+|+|++|+++
T Consensus 264 ~~~~~~~~~~-------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~-~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 264 NILAKVAAPE-------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----T-PTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp CEEEEEECSS-------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----C-CSEEEEEEECTTSCEEEEE
T ss_pred cEEEEEEcCC-------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----c-CCCCCeEEEcCCCCEEEEE
Confidence 8877766432 25689999999776665 68999999999999888773 2 3468999999999988777
Q ss_pred eCCCe
Q 016458 362 SWDTN 366 (389)
Q Consensus 362 ~~dg~ 366 (389)
..++.
T Consensus 332 ~~~~~ 336 (353)
T 3vgz_A 332 VKQKS 336 (353)
T ss_dssp EECCC
T ss_pred Ecccc
Confidence 76643
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.97 E-value=1.9e-27 Score=203.29 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=191.3
Q ss_pred eEEEEecCCcEEEEeCCC-CCe-eEEEeeCCCcEEEEEECCCCcEEEEecCC-CcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 81 RIVSASQDGRLIVWNALT-SQK-THAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
.+++++.|+.|++|++.. +.. ......+...+.+++|+|++++|++++.+ +.|.+|++.... ........+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccC
Confidence 344447899999999853 322 12223456678999999999988888776 999999997311 122223333333
Q ss_pred ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC---CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEE
Q 016458 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARL 233 (389)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i 233 (389)
. .+..++|+|++..+++++..++.|.+||+.. ......+ .....+.+++|+| +++.+++++ .++.|.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV------EGLDGCHSANISP-DNRTLWVPALKQDRICL 155 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE------CCCTTBCCCEECT-TSSEEEEEEGGGTEEEE
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc------cCCCCceEEEECC-CCCEEEEecCCCCEEEE
Confidence 3 7889999999854445555689999999943 3333333 2334588999999 666666665 8999999
Q ss_pred EeCCCCCccee----EEee-eccceEEEEEecCCCEEEEEe-cCCeEEEEECCC--Cce--eeEeecc-CCCCCCCCeeE
Q 016458 234 WDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GHQ--LQVYYQQ-HGENEIPHVTS 302 (389)
Q Consensus 234 ~d~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~-~~~~~~~~i~~ 302 (389)
||+........ .... ....+..++|+|+++++++++ .++.|.+|++.. +.. ....... ........+..
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 99986323322 2222 234688999999999776554 889999999954 332 1122111 11111234678
Q ss_pred EEeCCCCCEEEEEe-cCCcEEEEEcc----cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceec
Q 016458 303 IAFSISGRLLFAGY-SNGDCYVWDTL----LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRV 376 (389)
Q Consensus 303 ~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~ 376 (389)
++|+|+|++|+++. .++.|.+||+. ..+.+..+ ..+.. +.+++|+|+|++|++++ .++.+.+ |++
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v----~~~ 306 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ----PTETQ-PRGFNVDHSGKYLIAAGQKSHHISV----YEI 306 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE----ECSSS-CCCEEECTTSSEEEEECTTTCEEEE----EEE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee----cCCCc-cceEEECCCCCEEEEecCCCCeEEE----EEE
Confidence 99999999887554 78999999998 23444444 23333 88999999999888887 6899999 955
Q ss_pred c--cCccc
Q 016458 377 Q--EGALS 382 (389)
Q Consensus 377 ~--~~~~~ 382 (389)
+ +|++.
T Consensus 307 d~~~g~~~ 314 (343)
T 1ri6_A 307 VGEQGLLH 314 (343)
T ss_dssp ETTTTEEE
T ss_pred cCCCceee
Confidence 4 66543
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=6e-28 Score=201.94 Aligned_cols=257 Identities=15% Similarity=0.124 Sum_probs=190.0
Q ss_pred EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC-CCCCCCCCcceeeeccc-ccce
Q 016458 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYV 161 (389)
Q Consensus 84 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~-~~~v 161 (389)
.++.|+.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|.+||+.+ +. .......+ ...+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN 87 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence 4567899999999887766 4455678899999999999999986 78999999987 54 23333344 4678
Q ss_pred EEEEEeeCCCcEEEEee--CC--CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE-EEeeCCCceEEEeC
Q 016458 162 SCCQYVPDEDTHLITSS--GD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDT 236 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~--~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~ 236 (389)
.+++|+|++ +++++++ .+ ..|..+++.++.. ..+ .....+..++|+| +++.+ +++..++.+.+|++
T Consensus 88 ~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 88 NDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp SCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EEC------CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred cceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEe------ecCCCccceEECC-CCCEEEEEECCCCceEEEEE
Confidence 899999998 6777777 33 4455555555543 222 2233488999999 55555 47888999999997
Q ss_pred CCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
+........+..+...+.+++|+|++++|++++ .++.+.+|++. .+.....+.... ..+..++|+|+|++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 159 DIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA-----YGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp ETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS-----EEEEEEEECTTSSEEEE
T ss_pred ECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC-----cccCCeEECCCCCEEEE
Confidence 544345566677888899999999999888766 58999999886 444444443322 24889999999999988
Q ss_pred EecC-----------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 315 GYSN-----------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 315 ~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
++.+ +.|++||+.+++....... ..|...+.+++|+|++++|++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL--FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE--EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeecc--CCCCcccccceECCCCCEEEEEEecc
Confidence 8765 4699999988765332210 36778899999999999999887764
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=1.1e-26 Score=198.05 Aligned_cols=269 Identities=13% Similarity=0.069 Sum_probs=202.1
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCC--cEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeec-
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCA--WVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS- 155 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~- 155 (389)
++|++++.++.|.+||..+++.+..+..... .+..++|+|+++.+ +++..++.|.+||+.+++ ....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence 4789999999999999999988888775442 47899999999766 455668899999998754 232222
Q ss_pred c----cccceEEEEEeeCCCcEEEEee------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 156 G----HKGYVSCCQYVPDEDTHLITSS------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 156 ~----~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
. |...+..++|+|++ +.++++. .++.|.+||+.+++....+. ....+.+++|+| ++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~-dg 146 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------APRQITMLAWAR-DG 146 (337)
T ss_dssp CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------CCSSCCCEEECT-TS
T ss_pred CCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEe------CCCCcceeEECC-CC
Confidence 1 22357789999998 4566664 57999999999988877762 234578899999 66
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC------------------------eEE
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------------------------TCR 275 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~ 275 (389)
++++++ ++.|.+||+.+. +....+..+.. ...+.|+|++..++..+.++ .|.
T Consensus 147 ~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp SCEEEE--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CEEEEe--CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 666666 689999999876 55555543331 11337899988776554332 468
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
+||+.+++.. ...... ....+..++|+|+|++++++ ++.|.+||+.+++....+. ....+.+++|+|+|
T Consensus 223 ~~d~~~~~~~-~~~~~~---~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg 291 (337)
T 1pby_B 223 TMDLETGEMA-MREVRI---MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDG 291 (337)
T ss_dssp EEETTTCCEE-EEEEEE---CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTS
T ss_pred EEeCCCCCce-EeecCC---CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCC
Confidence 9999988765 322211 11247889999999999988 6899999999998887763 23467899999999
Q ss_pred CeEEeeeCCCeeEEeecceecccCccc
Q 016458 356 SALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 356 ~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
++|++++.++.|.+ ||+.+++..
T Consensus 292 ~~l~~~~~~~~i~v----~d~~~~~~~ 314 (337)
T 1pby_B 292 STVWLGGALGDLAA----YDAETLEKK 314 (337)
T ss_dssp CEEEEESBSSEEEE----EETTTCCEE
T ss_pred CEEEEEcCCCcEEE----EECcCCcEE
Confidence 99999999999999 999988754
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=4.3e-27 Score=221.74 Aligned_cols=302 Identities=11% Similarity=0.110 Sum_probs=215.3
Q ss_pred CCcccCCCcceeeeecccccC------------------------cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--e
Q 016458 48 APVSFGPTDLVCCRTLQGHAG------------------------KVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--K 101 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~------------------------~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~ 101 (389)
....|+.........+..|.. .|.+++|||||++|++++. +.|++||+.++. .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence 344566666665555555543 3899999999999999886 899999998873 4
Q ss_pred eEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc----------------ceEEEE
Q 016458 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG----------------YVSCCQ 165 (389)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~ 165 (389)
...+..+...+..++|+|+|++|++++ ++.|++||+.++. .......+.. .+..+.
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 215 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYW 215 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-------EEEeccCCccceeccccceeeeeccccccceE
Confidence 445666777899999999999999887 4689999998743 1222222221 247799
Q ss_pred EeeCCCcEEEEeeCCC---------------------------------eEEEEeCCC-CeeEEEecCcccCCCCCCeeE
Q 016458 166 YVPDEDTHLITSSGDQ---------------------------------TCVLWDITT-GLRTSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 166 ~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~ 211 (389)
|+|+| +.|++++.|+ .|.+||+.+ ++....... ..+...+..
T Consensus 216 ~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~ 291 (741)
T 2ecf_A 216 WAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLAR 291 (741)
T ss_dssp ECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEE
T ss_pred ECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEE
Confidence 99998 5677766554 889999988 776544311 246778999
Q ss_pred EEeeCCCCcEEEEeeC-----CCceEEEeCCCCCcceeEEeeecc----ceEEEEEecCCCEEEEEecCCeEEEEECC-C
Q 016458 212 VSISGSNSRMFVSGSC-----DSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFGTGSDDGTCRLFDIR-T 281 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~ 281 (389)
++| | +++.|++++. +..|++||+.++ .....+..+.. .+..++|+|||+++++++.||.+.+|.+. .
T Consensus 292 ~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~ 368 (741)
T 2ecf_A 292 VNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK 368 (741)
T ss_dssp EEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred EEe-C-CCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence 999 9 7777776543 568999999877 55555555543 45689999999999999999987887765 3
Q ss_pred CceeeEeeccCCCCCCCCeeEE-EeCCCCCEEEE-EecCC--cEEEEEccc-ceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 282 GHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFA-GYSNG--DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~-~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
+. ...+.... ..+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+ .. ...+..++|+|||+
T Consensus 369 ~~-~~~l~~~~-----~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l----~~-~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 369 GK-AAALTHGN-----WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL----SK-APGMHSASFARNAS 437 (741)
T ss_dssp SC-EEESCCSS-----SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC----CC-SCSEEEEEECTTSS
T ss_pred CC-eeeeeecc-----eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec----cc-CCCceEEEECCCCC
Confidence 33 44443322 237776 59999997765 44455 899999864 5445555 23 56788999999999
Q ss_pred eEEeeeCC----CeeEEeecceecccCc
Q 016458 357 ALCTGSWD----TNLKVNLGFWRVQEGA 380 (389)
Q Consensus 357 ~l~~~~~d----g~i~i~~~~W~~~~~~ 380 (389)
+|+....+ +.+.+ |+...+.
T Consensus 438 ~l~~~~~~~~~p~~~~l----~~~~~~~ 461 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIEL----FRANGEK 461 (741)
T ss_dssp EEEEEEEETTEEEEEEE----EETTSCE
T ss_pred EEEEEecCCCCCCeEEE----EEcCCCe
Confidence 98876554 45677 8876554
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1e-26 Score=217.93 Aligned_cols=298 Identities=18% Similarity=0.179 Sum_probs=209.4
Q ss_pred ccCCCcceee-eeccccc-----------------CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE
Q 016458 51 SFGPTDLVCC-RTLQGHA-----------------GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV 112 (389)
Q Consensus 51 ~~~~~~~~~~-~~l~~h~-----------------~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v 112 (389)
.|++...+.. +.+..|. ..|.+++|+|| +.++.+ .++.|++||+.+++... +..+...+
T Consensus 47 ~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~ 123 (706)
T 2z3z_A 47 VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEET 123 (706)
T ss_dssp EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCC
T ss_pred EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccc
Confidence 6777666553 4444443 56999999999 666655 45899999998876544 44456678
Q ss_pred EEEEECCCCcEEEEecCCCcEEEEeCCC-----CCCCCCCCcceeeeccccc--------------ceEEEEEeeCCCcE
Q 016458 113 MTCAFSPTGQSVACGGLDSVCSIFNLNS-----PTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTH 173 (389)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~ 173 (389)
.+++|+|+|+.|+++ .++.|++|++.+ +. .......+.. .+.++.|+|+| ++
T Consensus 124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-------~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~ 194 (706)
T 2z3z_A 124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR-------AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SC 194 (706)
T ss_dssp TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-------CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SE
T ss_pred cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-------cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CE
Confidence 899999999999985 679999999986 43 1221222222 25789999998 56
Q ss_pred EEEee---------------------------------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 174 LITSS---------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 174 l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
|++++ .+..|.+||+.++........ ..+...+.+++|+| +++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~sp-dg~ 270 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG---EPKEKFLTNLSWSP-DEN 270 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC---SCTTCEEEEEEECT-TSS
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC---CCCceeEeeEEEEC-CCC
Confidence 77766 457899999998876544311 24567799999999 788
Q ss_pred EEEEeeCCC-----ceEEEeCCCCCcceeEEe-e-ecc---ceEEEEEec--CCCEEEEEecCCeEEEEECC-CCceeeE
Q 016458 221 MFVSGSCDS-----TARLWDTRVASRAVRTFH-G-HEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQV 287 (389)
Q Consensus 221 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~ 287 (389)
.|++++.++ .|++||+.++ .....+. . +.. .+..++|+| +|+++++++.||.+++|++. ++.....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~ 349 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ 349 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence 888777665 8999999876 2333332 2 222 246789999 99999999999999999876 4555555
Q ss_pred eeccCCCCCCCCeeE-EEeCCCCCEEEEEecC-C----cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 288 YYQQHGENEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
+.... ..+.. ++|+|+|+.|+.++.+ + .|+.||+.+++ ...+ .+...+.+++|+|||++|+.+
T Consensus 350 l~~~~-----~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-----~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 350 VTKGE-----WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-----TPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp CCCSS-----SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-----CCSSSEEEEEECTTSSEEEEE
T ss_pred cCCCC-----eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-----cCCCceEEEEECCCCCEEEEE
Confidence 53322 23665 7999999987665544 3 56777776665 3333 356679999999999998876
Q ss_pred eCC----CeeEEeecceecccCc
Q 016458 362 SWD----TNLKVNLGFWRVQEGA 380 (389)
Q Consensus 362 ~~d----g~i~i~~~~W~~~~~~ 380 (389)
+.+ +.+.+ |++.+++
T Consensus 419 ~~~~~~p~~i~l----~d~~~~~ 437 (706)
T 2z3z_A 419 FQSPTVPRKVTV----TNIGKGS 437 (706)
T ss_dssp EECSSCSCEEEE----EESSSCE
T ss_pred ecCCCCCcEEEE----EECCCCe
Confidence 554 45888 9998876
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=7.6e-28 Score=226.32 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=204.4
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC---cEEEEEECCCCcEEEEecCC---------CcEEEE
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGLD---------SVCSIF 136 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~vw 136 (389)
.+.+++|+|||+++++ +.||+|++||..+++....+..+.. .|.+++|+|+|++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988877776654 48999999999999998764 778899
Q ss_pred eCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC---------
Q 016458 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA--------- 207 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------- 207 (389)
|+.++.. ........|...+..++|+|+| +.|+.++. +.|++||+.++...... ..+..
T Consensus 97 d~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~-----~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 97 KIPHGDP-----QSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVV-----STGKEGVIYNGLSD 164 (723)
T ss_dssp ESSSCCC-----EECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEE-----CCCBTTTEEEEECC
T ss_pred ECCCCce-----EeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEe-----cCCCCCceECcccc
Confidence 9987541 1122223455568889999998 56777665 79999999998776655 22222
Q ss_pred ---------CeeEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEeCCCCCccee
Q 016458 208 ---------DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAVR 244 (389)
Q Consensus 208 ---------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~ 244 (389)
.+.+++|+| +++.|++++.++ .|++||+.+. ....
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~ 242 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDL 242 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeE
Confidence 237899999 778887776543 7899999876 4334
Q ss_pred EEeee------ccceEEEEEecCCCEEEEEec----CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 245 TFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 245 ~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
.+..+ ...+..++|+|||++|++.+. +..|++||+.+++....+..............++|+|||+.|+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 45443 567899999999998877653 35799999999886665533221100000137899999997665
Q ss_pred --EecCC------cEEEEE-cccceE--EEeecCcCCCCCCCeeE-EEECCCCCeEEeeeCC---CeeEEeecceeccc
Q 016458 315 --GYSNG------DCYVWD-TLLAKV--VLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD---TNLKVNLGFWRVQE 378 (389)
Q Consensus 315 --~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d---g~i~i~~~~W~~~~ 378 (389)
+..++ .|++|| ...+.. ...+ ..+...+.. ++|+|||+.|+..+.+ +.+++ |++..
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l----~~~~~ 393 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL----YSANT 393 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE----EEECS
T ss_pred EEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE----EEEeC
Confidence 44566 577777 344431 3344 223334544 6999999999876665 78899 99864
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.9e-25 Score=190.00 Aligned_cols=275 Identities=11% Similarity=0.034 Sum_probs=196.7
Q ss_pred CCCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCc
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQ 122 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 122 (389)
.......|++...+....+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|+++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ 96 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence 34456678888777777777777777 9999999997766655 88999999999988 777777766665599999999
Q ss_pred EEEEecCCC---cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-EEEEeCCCCeeEEEec
Q 016458 123 SVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFG 198 (389)
Q Consensus 123 ~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 198 (389)
+++++..++ .|.+||+.++. ....+.. .....+++|+|++..++++...++. |.+|++..........
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNK-------FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTE-------EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EEEEecCCCCcccEEEEECCCCC-------eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 999665553 89999998754 3333333 3456899999998656666677788 9999988644332111
Q ss_pred CcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEEEEEecCCCEEEEEe-cCCe
Q 016458 199 GEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGT 273 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 273 (389)
.........+..++|+| +++ +++++..++.|.+||+.+. +. +..+. ....+..++|+|+|+++++++ .++.
T Consensus 169 -~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 169 -QEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp -EEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred -CccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE
Confidence 00023345689999999 665 5556667899999999876 44 55554 346678999999999776654 5788
Q ss_pred EEEEECCCCce--eeEeecc--CCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEE
Q 016458 274 CRLFDIRTGHQ--LQVYYQQ--HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVV 332 (389)
Q Consensus 274 i~i~d~~~~~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 332 (389)
|.+||+.+++. +..+... ...........++|+|+|++|++++. ++.|.+||+......
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 99999998876 3332221 01111112356899999998876655 569999999765543
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=3e-26 Score=223.08 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=224.1
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecC------CcEEEEeCCCCCeeEEEeeCCCcE-------EEEEE
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWV-------MTCAF 117 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~~~~~~~~~~~~~v-------~~~~~ 117 (389)
.|+.... ..+.+.+|.+.+.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ ..++|
T Consensus 37 ~~~~~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 37 EHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp EEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEE
T ss_pred EEECCCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccC
Confidence 3444433 345778899999999999999999988653 379999988765 56677777777 89999
Q ss_pred CCCCcEEEEecCC------CcEEEEeCCCCCCCC---CC----------------------C-----------------c
Q 016458 118 SPTGQSVACGGLD------SVCSIFNLNSPTDKD---GN----------------------L-----------------P 149 (389)
Q Consensus 118 ~~~~~~l~~~~~d------g~i~vw~~~~~~~~~---~~----------------------~-----------------~ 149 (389)
+|+|+++++++.+ ..|.+|++.++.... .. + .
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977777644 357777775532110 00 0 0
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-CeeEEEec-----------Cc-----------------
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFG-----------GE----------------- 200 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-----------~~----------------- 200 (389)
....+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+. ..
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~ 272 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNP 272 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECT
T ss_pred CeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecC
Confidence 11223567788888999875 5677777888888886542 11111110 00
Q ss_pred ----c--cCC-----------CCCCeeEEEee-CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc-ceEEEEEecC
Q 016458 201 ----F--QSG-----------HTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPD 261 (389)
Q Consensus 201 ----~--~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~ 261 (389)
. ... +...+.+++|+ | +++.+++++ ++.|.+|+.... . ...+..|.. .+..++|+ +
T Consensus 273 ~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSCEEEEEECSS-S
T ss_pred CceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCcceEEeeeEc-C
Confidence 0 000 12257888899 8 777777766 788999988754 2 334556666 88999999 9
Q ss_pred CCEEEEEecCCeEE-EEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCC
Q 016458 262 GNRFGTGSDDGTCR-LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (389)
Q Consensus 262 ~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (389)
|+.|++++.++.+. +||+..+..... .. +...+..++|+|||++|++++.++.|++||+.+++..... .
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~l-~~-----~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~----~ 417 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEKF-EE-----NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE----R 417 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEC-CC-----CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----E
T ss_pred CCeEEEEECCCceEEEEECCCCCceEe-cC-----CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec----c
Confidence 99999999888899 999987654332 22 2234899999999999999999999999999998887766 5
Q ss_pred CCCCCeeEEEECCCCCeEEeeeCCC----------eeEEeecceecccCccc
Q 016458 341 SHEGRITCLGLSADGSALCTGSWDT----------NLKVNLGFWRVQEGALS 382 (389)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~i~~~~W~~~~~~~~ 382 (389)
.|.+.+.+++|+|||++|++++.++ .|++ ||+.+++..
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l----~d~~~g~~~ 465 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV----YDMEGRKIF 465 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE----EETTTTEEE
T ss_pred CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE----EECCCCcEE
Confidence 7888999999999999999887754 8999 999988754
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=1.7e-26 Score=211.49 Aligned_cols=271 Identities=12% Similarity=0.104 Sum_probs=200.6
Q ss_pred cCcEEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecC---CCcEEEEeCCC-
Q 016458 67 AGKVYSLDWTSERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGL---DSVCSIFNLNS- 140 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~- 140 (389)
..+|.+++|+|||++||+++. ||+++||++.+++. ..+..+. ..+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 99999999865554 4444444 67999999999 77777664 45566766543
Q ss_pred -CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 141 -PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 141 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
... .. .+... ..+...+|+|+++..+++.+.++.+.+||+.+++..... . +.. .+++|+| ++
T Consensus 99 ~~g~------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-----~-~~~--~~~~~sp-DG 161 (582)
T 3o4h_A 99 RPGE------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-----R-LPG--FGFVSDI-RG 161 (582)
T ss_dssp STTC------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-----E-ESS--CEEEEEE-ET
T ss_pred CCCc------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-----c-CCC--ceEEECC-CC
Confidence 210 11 22222 123466899988766666666666669999998766554 1 222 7899999 88
Q ss_pred cEEEEeeCC----CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC--eEEEEECCCCceeeEeeccCC
Q 016458 220 RMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHG 293 (389)
Q Consensus 220 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 293 (389)
+.+++++.+ +.|++||+.++ + ...+..|...+..++|+|||++|+++..++ .|++||+.+++.. .+....
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~- 237 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS- 237 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC-
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC-
Confidence 888877776 78999998865 3 446778888899999999999999888888 8999999988766 332221
Q ss_pred CCCCCCeeEEE--------eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 294 ENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 294 ~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
..+..++ |+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ +++++++++.+.
T Consensus 238 ----~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------~~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 238 ----KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------APQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp ----SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-------CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred ----cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-------cCCCceEEEEec-CCEEEEEEcCCC
Confidence 1244455 9999999999999999999999 65543 233678999999 999999988875
Q ss_pred e---eEEeecceeccc
Q 016458 366 N---LKVNLGFWRVQE 378 (389)
Q Consensus 366 ~---i~i~~~~W~~~~ 378 (389)
. +.+ |+..+
T Consensus 304 ~p~~l~~----~d~~~ 315 (582)
T 3o4h_A 304 TPPRIVS----LPSGE 315 (582)
T ss_dssp EEEEEEE----ETTCC
T ss_pred CCCeEEE----EcCCC
Confidence 4 555 66553
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=5.3e-26 Score=221.33 Aligned_cols=284 Identities=12% Similarity=0.076 Sum_probs=221.8
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
....+.+|.+.+.++.|+++ .++++++.|+.+.||.+.. +.....+..+. .+...+|+|+|+.|+.+ .++.|.+|+
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d 271 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFN 271 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEec
Confidence 34556899999999999998 6777888889999998753 44445555554 35677999999999887 489999999
Q ss_pred CCCCCCCCCCCcceeeecc-----------cccceEEEEEe-eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 138 LNSPTDKDGNLPVSRMLSG-----------HKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
+.... . ..+.. |...+.+++|+ |++ ..+++++ ++.|.+|++..+.... + ..+
T Consensus 272 ~~~~~-------l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~-~-----~~~ 335 (1045)
T 1k32_A 272 PDTEK-------I-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK-V-----PEP 335 (1045)
T ss_dssp TTTCC-------E-EECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE-C-----SCC
T ss_pred CCceE-------e-eeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE-c-----cCC
Confidence 84321 1 12222 45578999999 998 5666666 8899999998876554 3 355
Q ss_pred CC-CeeEEEeeCCCCcEEEEeeCCCceE-EEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 206 TA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 206 ~~-~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
.. .+..++|+ +++.++.++.++.+. +||+... . ...+..|...+..++|+|+|++|++++.++.|++||+.+++
T Consensus 336 ~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~-~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 336 LRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp SCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC-C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 56 78999998 667777777788888 8998765 3 33444777889999999999999999999999999999988
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC----------cEEEEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
.......+. ..+..++|+|||++|++++.++ .|++||+.+++ ...+ ..|...+.+++|+|
T Consensus 412 ~~~~~~~~~-----~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l----~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 412 PTVIERSRE-----AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA----TTENSHDYAPAFDA 481 (1045)
T ss_dssp EEEEEECSS-----SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC----SCSSSBEEEEEECT
T ss_pred eEEeccCCC-----CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe----eCCCcccCCceEcC
Confidence 766553332 2478999999999998887654 89999999887 5555 57788899999999
Q ss_pred CCCeEEeeeCCCeeEEeecceecccC
Q 016458 354 DGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 354 ~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
||++|++++.++...+ |+....
T Consensus 482 dG~~l~~~s~~~~~~~----~~~~~~ 503 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPS----PDRVVL 503 (1045)
T ss_dssp TSCEEEEEESCCCCCE----ECSSSS
T ss_pred CCCEEEEEecccCCcC----cchhcc
Confidence 9999999999888888 775543
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=3e-26 Score=214.81 Aligned_cols=281 Identities=12% Similarity=0.108 Sum_probs=198.1
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCee-EEEeeCC-----------------CcEEEEEECCCCcEEEEecCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPC-----------------AWVMTCAFSPTGQSVACGGLDS 131 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg 131 (389)
+..+.|. ++.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+|+ +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5567888 66777777787 8 9999999873 3333322 46999999999 6555553 59
Q ss_pred cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC-----CeeEEEecCcccCCCC
Q 016458 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVFGGEFQSGHT 206 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~ 206 (389)
.|++||+.++. ...+..+...+.+++|+|+| +.|++ ..++.|++||+.+ ++..... ..+.
T Consensus 102 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~-----~~~~ 166 (706)
T 2z3z_A 102 GLVGFDMLARK--------VTYLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLGEGMSRAIAVT-----IDGT 166 (706)
T ss_dssp EEEEEETTTTE--------EEEEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTTSCCCCCEESC-----SCCB
T ss_pred EEEEEECCCCc--------eEEccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCcccccCCCcEEec-----cCCC
Confidence 99999998743 23344566778889999998 56666 4679999999998 7665543 2222
Q ss_pred C--------------CeeEEEeeCCCCcEEEEee---------------------------------CCCceEEEeCCCC
Q 016458 207 A--------------DVLSVSISGSNSRMFVSGS---------------------------------CDSTARLWDTRVA 239 (389)
Q Consensus 207 ~--------------~v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~ 239 (389)
. .+.++.|+| +++.|++++ .+..|++||+.++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 2 258899999 788888776 4467999999876
Q ss_pred CcceeEE--eeeccceEEEEEecCCCEEEEEecCC-----eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC--CCC
Q 016458 240 SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGR 310 (389)
Q Consensus 240 ~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 310 (389)
...... ..|...+.+++|+|||++|++++.++ .|.+||+.+++....+...........+..++|+| +|+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 246 -KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp -EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred -ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence 322222 24566799999999999999988775 89999999884444433222221111246789999 999
Q ss_pred EEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeE-EEECCCCCeEEeeeCC-C----eeEEeecceecccCcc
Q 016458 311 LLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T----NLKVNLGFWRVQEGAL 381 (389)
Q Consensus 311 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d-g----~i~i~~~~W~~~~~~~ 381 (389)
++++++.+|.+++|++. ++..+..+ ..+...+.. ++|+|+|+.|+.++.+ + .|.. |++.++++
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~----~d~~~~~~ 394 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC----IDIKGGKT 394 (706)
T ss_dssp EEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE----EETTCCCC
T ss_pred EEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE----EEcCCCCc
Confidence 99999999999999886 56666666 567777877 7999999988766554 3 4555 77777654
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=6.9e-26 Score=189.39 Aligned_cols=255 Identities=14% Similarity=0.095 Sum_probs=187.6
Q ss_pred CCCCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCeeEEEeeC-CCcEEEEEECCCCcE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLP-CAWVMTCAFSPTGQS 123 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~ 123 (389)
+.....|+....+.. .+..|.+.|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++
T Consensus 21 ~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 98 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL 98 (297)
T ss_dssp CEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred ceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence 344556776665544 5667899999999999999999986 78999999998 7776665555 367889999999999
Q ss_pred EEEec--CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC--CCeeEEEecC
Q 016458 124 VACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGG 199 (389)
Q Consensus 124 l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~ 199 (389)
|++++ .++...||.++.... ....+..+ ..+..++|+|++..++++++.++.+.+|++. ++.. ..+
T Consensus 99 l~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~-- 168 (297)
T 2ojh_A 99 YAISDKVEFGKSAIYLLPSTGG------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL-- 168 (297)
T ss_dssp EEEEECTTTSSCEEEEEETTCC------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EEC--
T ss_pred EEEEEeCCCCcceEEEEECCCC------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEc--
Confidence 99988 345566666543211 12223333 3488899999985555588899999999853 3433 333
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC-------
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------- 271 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 271 (389)
..+...+.+++|+| +++.+++++ .++.+.+|+++........+..|...+..++|+|++++|++++.+
T Consensus 169 ---~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 169 ---THGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp ---CCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred ---ccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 46677899999999 666665554 689999999874446667777788889999999999999988876
Q ss_pred ----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 272 ----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 272 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
+.|.+||+.+++........ .+...+..++|+|++++|++++.+.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLF---GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEE---ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccC---CCCcccccceECCCCCEEEEEEecc
Confidence 56999999887654433221 1122478899999999998887654
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1.1e-25 Score=211.52 Aligned_cols=300 Identities=11% Similarity=0.022 Sum_probs=204.2
Q ss_pred CCCCcccCCCcceeeeecccccC---cEEEEEEcCCCCeEEEEecC---------CcEEEEeCCCCCeeEEEee---CCC
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKL---PCA 110 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~---~~~ 110 (389)
+.....|++...+....+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++. ..+.. +..
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~ 114 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNA 114 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccc
Confidence 34566788887777778877775 49999999999999998764 7888999998876 33332 333
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccccc------------------ceEEEEEeeCCCc
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG------------------YVSCCQYVPDEDT 172 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~ 172 (389)
.+..++|+|+|+.|+.++. +.|++|++.++. .......+.. .+.++.|+|+| +
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~ 185 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-T 185 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-S
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCc-------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-C
Confidence 4888999999999999876 789999998754 2222232222 23789999998 5
Q ss_pred EEEEeeCCC----------------------------------eEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCC
Q 016458 173 HLITSSGDQ----------------------------------TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGS 217 (389)
Q Consensus 173 ~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 217 (389)
.|++++.++ .|++||+.++.....+... ....+...+.+++|+|
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp- 264 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT- 264 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-
Confidence 666665432 7999999988754444210 0011356789999999
Q ss_pred CCcEEEEeeC----CCceEEEeCCCCCcceeEEeee-ccce----EEEEEecCCCEEEEE--ecCC------eEEEEEC-
Q 016458 218 NSRMFVSGSC----DSTARLWDTRVASRAVRTFHGH-EGDV----NTVKFFPDGNRFGTG--SDDG------TCRLFDI- 279 (389)
Q Consensus 218 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~~~--~~dg------~i~i~d~- 279 (389)
+++++++... +..|++||+.++ +....+..+ ...+ ..++|+|||+.|+.. ..++ .|.+||+
T Consensus 265 Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 265 STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 7777766543 357999999876 444444333 3333 378999999977754 4666 5777773
Q ss_pred CCCce--eeEeeccCCCCCCCCeeE-EEeCCCCCEEEEEecC---CcEEEEEcccce--EEEeecCcCCCCCCCeeEEEE
Q 016458 280 RTGHQ--LQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSN---GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 280 ~~~~~--~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~ 351 (389)
..+.. ...+..... .+.. ++|+|+|+.|+..+.+ +.+++|++.... ....+... ..|...+..++|
T Consensus 344 ~~~~~~~~~~l~~~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 417 (723)
T 1xfd_A 344 PNSSNDNIQSITSGDW-----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-LVENCTYFSASF 417 (723)
T ss_dssp CCSSSCCCCBSCCSSS-----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-SSSSCCCCEEEE
T ss_pred CCCCccceeEeecCCe-----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-ccCCCCeEEEEE
Confidence 43331 333322111 2444 6899999998766555 789999986432 23333100 016677899999
Q ss_pred CCCCCeEEeeeC
Q 016458 352 SADGSALCTGSW 363 (389)
Q Consensus 352 ~~~~~~l~~~~~ 363 (389)
+|||++|+....
T Consensus 418 spdg~~l~~~~~ 429 (723)
T 1xfd_A 418 SHSMDFFLLKCE 429 (723)
T ss_dssp CTTSSEEEEECC
T ss_pred CCCCCEEEEEcc
Confidence 999998876543
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=1.9e-24 Score=185.11 Aligned_cols=280 Identities=10% Similarity=0.062 Sum_probs=184.9
Q ss_pred CCcEEEEeCC--CCCeeE-EEeeCCCcEEEEEECCCCcEEEEecC---CCcEEEEeCCCCCCCCCCCcceeeecccccce
Q 016458 88 DGRLIVWNAL--TSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (389)
Q Consensus 88 dg~v~iw~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 161 (389)
++.|.+|++. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++..+. .........+...+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPP 88 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCC
Confidence 4567777664 454433 2234456678899999999 555543 6899999996532 12333444567788
Q ss_pred EEEEEeeCCCcEEEEee-CCCeEEEEeCCC-Ce--eEEEecCccc----CCCCCCeeEEEeeCCCCcEEEEeeCCCceEE
Q 016458 162 SCCQYVPDEDTHLITSS-GDQTCVLWDITT-GL--RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (389)
Q Consensus 162 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 233 (389)
..++|+|++ ++|++++ .++.|.+|++.. +. .+..+..... ......+.+++|+| +++++++...++.|.+
T Consensus 89 ~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 89 AYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYV 166 (347)
T ss_dssp SEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred EEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEE
Confidence 899999998 5566555 789999999963 22 2222211000 01223588999999 6667777777889999
Q ss_pred EeCCCCCccee--EEeee-ccceEEEEEecCCCEEEE-EecCCeEEEEECCC--Cceee--EeeccC-CCCCCCCeeEEE
Q 016458 234 WDTRVASRAVR--TFHGH-EGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT--GHQLQ--VYYQQH-GENEIPHVTSIA 304 (389)
Q Consensus 234 ~d~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~--~~~~~~-~~~~~~~i~~~~ 304 (389)
||+........ .+..+ ...+..++|+|+|+++++ ...++.|.+|++.. ++... .+.... .......+..++
T Consensus 167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 99983323221 12222 235788999999996665 55788999999874 43221 111111 001113478899
Q ss_pred eCCCCCEEEE-EecCCcEEEEEccc---ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-CeeEEeecce--ecc
Q 016458 305 FSISGRLLFA-GYSNGDCYVWDTLL---AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKVNLGFW--RVQ 377 (389)
Q Consensus 305 ~~~~~~~l~~-~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~~~~W--~~~ 377 (389)
|+|+|++|++ ...++.|.+|++.. .+.+..+ ..+...+.+++|+|||++|++++.+ +.+.+ | +..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v----~~~d~~ 318 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI----STEGDFPRDFDLDPTEAFVVVVNQNTDNATL----YARDLT 318 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE----ECSSSCCCEEEECTTSSEEEEEETTTTEEEE----EEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE----ecCCCCcCeEEECCCCCEEEEEEcCCCcEEE----EEEeCC
Confidence 9999998755 45688999999873 2444444 4556678999999999988888765 89999 9 556
Q ss_pred cCcccC
Q 016458 378 EGALSP 383 (389)
Q Consensus 378 ~~~~~~ 383 (389)
+|++..
T Consensus 319 tg~l~~ 324 (347)
T 3hfq_A 319 SGKLSL 324 (347)
T ss_dssp TCCEEE
T ss_pred CCeEEe
Confidence 777654
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.1e-24 Score=186.23 Aligned_cols=274 Identities=13% Similarity=0.145 Sum_probs=183.1
Q ss_pred ccccCcEEEEEEcCCCCeEEEEecC-CcEEEEeCC--CCCe--eEEEeeCCCcEEEEEECCCCcEEEEecC-CCcEEEEe
Q 016458 64 QGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNAL--TSQK--THAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFN 137 (389)
Q Consensus 64 ~~h~~~v~~~~~~~~~~~l~~~~~d-g~v~iw~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~ 137 (389)
..|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+. .+..++|+|+++++++++. ++.|.+|+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3577789999999999999888876 999999997 5553 33444443 7889999999998876654 88999999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCC-CeeEEEecCcccCCCCCCeeEEEee
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
+..+. .......... ...+.+++|+|++. .+++++ .++.|.+||+.+ +.................+..++|+
T Consensus 113 ~~~~~----~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 1ri6_A 113 LEDGL----PVGVVDVVEG-LDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186 (343)
T ss_dssp EETTE----EEEEEEEECC-CTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred CCCCc----cccccccccC-CCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence 95211 1112233333 34588899999984 555555 899999999987 5443211000002234578899999
Q ss_pred CCCCcEE-EEeeCCCceEEEeCCCCCcc---eeEEeee------ccceEEEEEecCCCEEEEE-ecCCeEEEEECCC--C
Q 016458 216 GSNSRMF-VSGSCDSTARLWDTRVASRA---VRTFHGH------EGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--G 282 (389)
Q Consensus 216 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~---~~~~~~~------~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~ 282 (389)
| +++++ +++..++.|.+||+...... ....... ...+..++|+|++++|+++ ..++.|.+||+.. +
T Consensus 187 p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 187 P-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp T-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred C-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 9 56644 55558899999999642111 2222211 2246689999999888754 4789999999983 2
Q ss_pred c--eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcc--cceE--EEeecCcCCCCCCCeeEEEECCCC
Q 016458 283 H--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LAKV--VLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 283 ~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
. .+..+... . .+..++|+|+|++|++++ .++.|.+|++. +++. +..+ .. .....+++|.++.
T Consensus 266 ~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~----~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 266 VLSKEGFQPTE-T-----QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY----AV-GQGPMWVVVNAHE 334 (343)
T ss_dssp CEEEEEEEECS-S-----SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE----EC-SSSCCEEEEEEEC
T ss_pred ceEEeeeecCC-C-----ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc----cc-CCCCeeEEEEccc
Confidence 2 22222221 1 278899999999888887 57999999554 5543 3333 12 2456678887754
Q ss_pred C
Q 016458 356 S 356 (389)
Q Consensus 356 ~ 356 (389)
+
T Consensus 335 ~ 335 (343)
T 1ri6_A 335 G 335 (343)
T ss_dssp -
T ss_pred C
Confidence 3
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.95 E-value=4.2e-24 Score=183.93 Aligned_cols=289 Identities=10% Similarity=0.027 Sum_probs=190.0
Q ss_pred CeEEEEe----cCCcEEEEeC--CCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCc
Q 016458 80 NRIVSAS----QDGRLIVWNA--LTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 80 ~~l~~~~----~dg~v~iw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~ 149 (389)
.+++.|+ .++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|+++... ....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcEE
Confidence 3555554 4568999866 4555443333356678889999999999998875 799999987631 1122
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc---------ccCCCCCCeeEEEeeCCCCc
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------FQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~ 220 (389)
.......+......+++ ++..++++...++.|.+|++.....+...... ....+...+.+++|+| +++
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~ 167 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGK 167 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSS
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCC
Confidence 23333334556677777 55444444457899999999754332211000 0011233468899999 666
Q ss_pred EE-EEeeCCCceEEEeCCCCCc----c-e-------eEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceee
Q 016458 221 MF-VSGSCDSTARLWDTRVASR----A-V-------RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 221 ~l-~~~~~dg~i~i~d~~~~~~----~-~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 286 (389)
++ ++...++.|.+|++..... . + .....+...+..++|+|+|+++++++ .++.|.+||+.++....
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 44 5555588999999876532 1 1 11223345678999999999887777 68999999998765432
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecC--CcEEEEEcc--cce--EEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTL--LAK--VVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
................++|+|||++|+++..+ +.|.+|++. +++ .+..+ .. ...+.+++|+|||++|++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----~~-g~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ----LT-GIHPRNFIITPNGKYLLV 322 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE----EC-SSCCCEEEECTTSCEEEE
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe----cC-CCCCceEEECCCCCEEEE
Confidence 22222222222346899999999999777665 889999986 344 33333 22 457889999999999888
Q ss_pred ee-CCCeeEEeecceec--ccCcccC
Q 016458 361 GS-WDTNLKVNLGFWRV--QEGALSP 383 (389)
Q Consensus 361 ~~-~dg~i~i~~~~W~~--~~~~~~~ 383 (389)
++ .++.|.+ |++ .+|++..
T Consensus 323 ~~~~~~~v~v----~~~d~~~g~~~~ 344 (361)
T 3scy_A 323 ACRDTNVIQI----FERDQATGLLTD 344 (361)
T ss_dssp EETTTTEEEE----EEECTTTCCEEE
T ss_pred EECCCCCEEE----EEEECCCCcEee
Confidence 87 5788998 655 4676654
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=2.5e-24 Score=188.74 Aligned_cols=299 Identities=12% Similarity=0.084 Sum_probs=196.8
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCC----------CeeEE-----EeeCCCcEEEEEECCCCcEEE----Ee
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----------QKTHA-----IKLPCAWVMTCAFSPTGQSVA----CG 127 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~ 127 (389)
...++.+++++++.++++++.|+ +++|+.... ..... ...+...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 899875311 01110 112345799999999999999 78
Q ss_pred cCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccC
Q 016458 128 GLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (389)
Q Consensus 128 ~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 203 (389)
+.|+.|++||+.+... ..........+.+|...|.+++|+|+.+.+|++++.||.|++||++++...... .
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-----~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-----L 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----E
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----c
Confidence 8999999999875310 001112245667899999999999985589999999999999999998665554 4
Q ss_pred CCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee-------ccceEEEEEecCCCEEEEEe-cCC---
Q 016458 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------EGDVNTVKFFPDGNRFGTGS-DDG--- 272 (389)
Q Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~-~dg--- 272 (389)
.|...|.+++|+| ++++|++|+.||.|++||.+ . .....+..| ...+.+++|++++.++++.+ .||
T Consensus 190 ~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 190 PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 6788999999999 78999999999999999998 3 444444433 23799999999887775433 443
Q ss_pred ---eEEEEECCCCce--eeEeeccCCC-----CCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccce--E-EE-----
Q 016458 273 ---TCRLFDIRTGHQ--LQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAK--V-VL----- 333 (389)
Q Consensus 273 ---~i~i~d~~~~~~--~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~-~~----- 333 (389)
.+++|+++.... ...+...... ....+-..+.+-++.+++++++. .+.|.++...... . ..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~ 346 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDS 346 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccc
Confidence 389999986531 1111111111 11112223333366676666544 4446666543210 0 01
Q ss_pred ---eecCcCCCCCCCeeEEEECC---------------CCCeEEeeeCCCeeEEeecceeccc
Q 016458 334 ---NLGSLQNSHEGRITCLGLSA---------------DGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 334 ---~~~~~~~~~~~~v~~~~~~~---------------~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+.......+..+..++++- -...|..-+.||.+.. |.+-.
T Consensus 347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~----~~~~~ 405 (434)
T 2oit_A 347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCP----FYMIN 405 (434)
T ss_dssp GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEE----EEEEE
T ss_pred ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEE----EEEEe
Confidence 11100012233344454432 1246788889999998 66654
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.3e-24 Score=183.69 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=195.0
Q ss_pred CCCCcccCCCcceeeeeccccc-C-cEEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCeeEEEeeCC-----CcEEEEEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHA-G-KVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPC-----AWVMTCAF 117 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~-~-~v~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~ 117 (389)
......|++...+....+.... . .+.+++|+|+++++ ++++.++.|.+||+.+++.+..+.... ..+..++|
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence 3445567777777777765333 2 48899999999866 455667899999999999887776432 24678999
Q ss_pred CCCCcEEEEec------------CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 118 SPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 118 ~~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
+|++++++++. .++.|.+||+.+++ ....+.. ...+.+++|+|++ ++++++ ++.|.+
T Consensus 90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~ 158 (337)
T 1pby_B 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-------RRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHV 158 (337)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-------EEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEE
T ss_pred CCCCCEEEEEecccccccccccccCceEEEEECCCCc-------EEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEE
Confidence 99999998886 57999999997643 2333332 3457788999998 455555 688999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCC-----------------------ceEEEeCCCCCc
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS-----------------------TARLWDTRVASR 241 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~~~ 241 (389)
||+.+++....+... ....+ +.|+| ++..++..+ .++ .|.+||+.+...
T Consensus 159 ~d~~~~~~~~~~~~~---~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQ---SWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EETTTTEEEEEECST---TTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EECCCCcEeeeeecc---ccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 999999887766321 11122 26677 444443333 222 468999987743
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (389)
....+..+...+.+++|+|++++++++ ++.|.+||+.+++....+.... .+.+++|+|+|++|++++.++.|
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECTTSCEEEEESBSSEE
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC------ceeeEEECCCCCEEEEEcCCCcE
Confidence 333445566678899999999999988 7999999999988777665432 36899999999999999999999
Q ss_pred EEEEcccceEEEeec
Q 016458 322 YVWDTLLAKVVLNLG 336 (389)
Q Consensus 322 ~i~d~~~~~~~~~~~ 336 (389)
.+||+.+++.+..+.
T Consensus 304 ~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 304 AAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECcCCcEEEEEE
Confidence 999999998888773
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=3.4e-24 Score=183.63 Aligned_cols=277 Identities=10% Similarity=0.070 Sum_probs=188.6
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCc
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~ 149 (389)
.+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~------- 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK------- 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence 45678888899999999999999999998888877654 2478899999998664 55678999999998744
Q ss_pred ceeeec-cc-----ccceEEEEEeeCCCcEEEEeeCC------------CeEEEEeCCCCeeE---EEecCcccCCCCCC
Q 016458 150 VSRMLS-GH-----KGYVSCCQYVPDEDTHLITSSGD------------QTCVLWDITTGLRT---SVFGGEFQSGHTAD 208 (389)
Q Consensus 150 ~~~~~~-~~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~~~~ 208 (389)
....+. .+ ...+..++|+|++ +++++++.+ +.|.+||+.+++.. ..+ .+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~ 149 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQ 149 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSS
T ss_pred EEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCc
Confidence 233332 22 2347789999998 567766654 89999999885432 222 23346
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeecc------------------------ceEEEEEecCCCE
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG------------------------DVNTVKFFPDGNR 264 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~ 264 (389)
+.+++|+| ++++ ++++ +.|.+||..+. +....+..+.. ....+++++++..
T Consensus 150 ~~~~~~s~-dg~l-~~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 150 VYLMRAAD-DGSL-YVAG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp CCCEEECT-TSCE-EEES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred ccceeECC-CCcE-EEcc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 88999999 6664 4443 44999999876 45544432210 2345666654422
Q ss_pred EEEEecC-CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCC
Q 016458 265 FGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (389)
Q Consensus 265 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (389)
....... ..+..+|..+++....-... ....+..++|+| ++++++++ ++.|.+||+.+++....+. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~ 293 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFAD----LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----L 293 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEE----CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----C
T ss_pred CccccccceeEEEEeccCCcEEeccccc----CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----C
Confidence 1111101 11222444444322111111 122478999999 99999988 7899999999999887773 2
Q ss_pred CCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 343 EGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 343 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
...+.+++|+|+|++|++++.++.|.+ ||+.+++..
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v----~d~~~~~~~ 329 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAV----FNPDTLEKV 329 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEE----EETTTTEEE
T ss_pred CCCccceEECCCCCEEEEecCCCeEEE----Eecccccee
Confidence 335789999999999999888999999 999988754
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.6e-23 Score=179.76 Aligned_cols=252 Identities=10% Similarity=0.024 Sum_probs=190.4
Q ss_pred CcEEEEEECCCCcEEEEecC-------CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe
Q 016458 110 AWVMTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 182 (389)
..+..++|+|+++++++++. ++.|.+||..+++ ....+.. ...+..+.|+|++..++++...++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------EEEEEec-CCCcceEEECCCCCEEEEEecCCCE
Confidence 45789999999998888774 5689999998754 3333332 3457789999998656677777899
Q ss_pred EEEEeCCCCeeEEEecCcccC----CCCCCeeEEEeeCCCCcEEEEee--CCCceEEEeCCCCCcceeEEeeeccceEEE
Q 016458 183 CVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTV 256 (389)
Q Consensus 183 i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~ 256 (389)
|.+||..+++....+...... .....+.+++++| +++.+++++ .++.|.+||..+. +....+..+...+.++
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCC
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceE
Confidence 999999999887777421000 0011268899999 556555554 4788999999877 6666666456668899
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-CcEEEEEcccceEEEee
Q 016458 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 335 (389)
+|+|+++++++++.++.|.+||+.+++....+..... .....+..++|+|+|+++++++.+ +.|.+||..+++....+
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 9999999999999999999999999888776654221 123347889999999988777654 89999999999988877
Q ss_pred cCcCCCCCCCeeEEEECCCCCeEEeee-CCCeeEEeecceecccCccc
Q 016458 336 GSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 336 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~~~~~~ 382 (389)
. ... ..+++|+|+|+++++++ .++.|.+ ||+.+++..
T Consensus 270 ~----~~~--~~~~~~s~dg~~l~v~~~~~~~v~~----~d~~~~~~~ 307 (353)
T 3vgz_A 270 A----APE--SLAVLFNPARNEAYVTHRQAGKVSV----IDAKSYKVV 307 (353)
T ss_dssp E----CSS--CCCEEEETTTTEEEEEETTTTEEEE----EETTTTEEE
T ss_pred E----cCC--CceEEECCCCCEEEEEECCCCeEEE----EECCCCeEE
Confidence 4 222 25699999999665555 6899999 999988764
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.7e-23 Score=179.16 Aligned_cols=256 Identities=11% Similarity=0.147 Sum_probs=174.3
Q ss_pred cccccCcEEEEEEcCCCCeEEEEec---CCcEEEEeCCCCC--eeEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEE
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQ---DGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF 136 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw 136 (389)
...+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345667788999999998 555544 6899999997765 3344445667788999999999888887 67999999
Q ss_pred eCCCCCCCCCCCcceeeecc---------cccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-CCeeEEEecCcccCCCC
Q 016458 137 NLNSPTDKDGNLPVSRMLSG---------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGGEFQSGHT 206 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~ 206 (389)
++.... .......... +...+.+++|+|++. ++++...++.|.+|++. ++......... ....
T Consensus 114 ~~~~~g----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~--~~~g 186 (347)
T 3hfq_A 114 KIAADG----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT--MEAG 186 (347)
T ss_dssp EECTTS----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE--CCTT
T ss_pred EeCCCC----CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE--cCCC
Confidence 996421 1112222211 123488899999985 77777788999999998 45433221100 2233
Q ss_pred CCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcc---eeEEeeec------cceEEEEEecCCCEEE-EEecCCeEE
Q 016458 207 ADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRA---VRTFHGHE------GDVNTVKFFPDGNRFG-TGSDDGTCR 275 (389)
Q Consensus 207 ~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~------~~i~~~~~~~~~~~l~-~~~~dg~i~ 275 (389)
..+..++|+| +++ +++++..++.|.+|++...... ...+.... ..+..++|+|+|++|+ +...++.|.
T Consensus 187 ~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 187 FGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred CCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 4678899999 666 5555667889999998752122 22222222 3478899999999875 555689999
Q ss_pred EEECCCC---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-CcEEEE--EcccceEE
Q 016458 276 LFDIRTG---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVW--DTLLAKVV 332 (389)
Q Consensus 276 i~d~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~ 332 (389)
+|++... ..+..+... ...+..++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 266 v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTE-----GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECGGGCEEEEEEEECS-----SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEECCCCcEEEeEEEecC-----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9998732 222222221 1236899999999998888764 899999 44556554
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.93 E-value=2e-24 Score=187.88 Aligned_cols=300 Identities=11% Similarity=0.009 Sum_probs=201.7
Q ss_pred cCCCcceeeeecccccCcEEE-----EEEcCCCCeEEEEec-CC--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYS-----LDWTSERNRIVSASQ-DG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS 123 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~-----~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (389)
.++........+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+...+|+|+++.
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 345556677788888877666 899999999998887 66 4888899888877666666555556789999999
Q ss_pred EEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEE--EeeCCCcEEEE----------------------eeC
Q 016458 124 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ--YVPDEDTHLIT----------------------SSG 179 (389)
Q Consensus 124 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~----------------------~~~ 179 (389)
|+.++.++.|++||+.++. .......+...+.... +++++ .+++. ...
T Consensus 95 l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCC
Confidence 9999999999999998754 2333344444444333 36776 44542 234
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeeec--c
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE--G 251 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~ 251 (389)
+..|.+||+.+++..... .+...+..+.|+|.+++.|+....+ ..|.++|.... ....+..+. .
T Consensus 167 ~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~ 238 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGE 238 (388)
T ss_dssp CEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTE
T ss_pred cceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCc
Confidence 578999999998765554 3455688999998445555555443 37778887643 333444343 3
Q ss_pred ceEEEEEecCCCEEEEEec-CC----eEEEEECCCCceeeEeeccCCCCCC-CCeeEEEeCCCCCEEEEE---------e
Q 016458 252 DVNTVKFFPDGNRFGTGSD-DG----TCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG---------Y 316 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~---------~ 316 (389)
.+..++|+|||+.|+..+. ++ .|++||+.+++......... ..+. .......|+|||+.|+.. .
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 5778899999998766543 22 39999999887543322111 0000 001223699999987754 4
Q ss_pred cCCcEEEEEcccceEEEeecCcCCCCCC-----------CeeEEEECCCCCeEEeee-CCCeeEEeecceecc
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKVNLGFWRVQ 377 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~-~dg~i~i~~~~W~~~ 377 (389)
.+..|++||+.+++..... .+.. .+.+++|+|||+.|+.++ .+|...| |.+.
T Consensus 318 ~~~~i~~~d~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l----~~~~ 381 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVA-----RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL----YLAT 381 (388)
T ss_dssp CCCEEEEEETTTTEEEEEE-----ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE----EEEE
T ss_pred CCCEEEEEeccCCceEEec-----cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE----EEEE
Confidence 4568999999887754332 2333 578899999999887766 4777777 6654
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=1.4e-22 Score=174.37 Aligned_cols=271 Identities=10% Similarity=0.090 Sum_probs=180.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecC----CcEEEEeCCC--CCe--eEEEeeCCCcEEEEEECCCCcEEEEec-CCCcEEEE
Q 016458 66 HAGKVYSLDWTSERNRIVSASQD----GRLIVWNALT--SQK--THAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIF 136 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~d----g~v~iw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw 136 (389)
|...+..++|+|++++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 77788899999999999998876 7999998865 332 2333334556778888 777776665 58899999
Q ss_pred eCCCCCCCCCCCcceeeec--------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee------E------EE
Q 016458 137 NLNSPTDKDGNLPVSRMLS--------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR------T------SV 196 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~------~~ 196 (389)
++....... ......... .+...+.+++|+|++..++++...++.|.+|++..... + ..
T Consensus 126 ~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 126 PIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 997533111 110011111 12234588999999854555666689999998875431 1 11
Q ss_pred ecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCCCcc--eeEEe---eeccceEEEEEecCCCEEEEEec
Q 016458 197 FGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA--VRTFH---GHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
.. ......+..++|+| +++++++++ .++.|.+||+.++ .. +..+. .+......++|+|+|++|+++..
T Consensus 205 ~~----~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 205 FK----VAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EE----CCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ee----cCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 11 23455678999999 777666655 6899999999854 22 22222 12234679999999999877665
Q ss_pred C--CeEEEEECC--CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEc--ccceEEEeecCcCCCCC
Q 016458 271 D--GTCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLAKVVLNLGSLQNSHE 343 (389)
Q Consensus 271 d--g~i~i~d~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~ 343 (389)
+ +.|.+|++. +++......... ...+..++|+|+|++|++++ .++.|.+|++ .+++...... ..+.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~---~~~~ 351 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK---DIKV 351 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC---CEEC
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce---eeeC
Confidence 4 899999986 344222211111 12378999999999998887 5688999654 4666554432 2345
Q ss_pred CCeeEEEEC
Q 016458 344 GRITCLGLS 352 (389)
Q Consensus 344 ~~v~~~~~~ 352 (389)
..+.|+.|.
T Consensus 352 ~~p~~v~~~ 360 (361)
T 3scy_A 352 DKPVCLKFV 360 (361)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEc
Confidence 578898885
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=5.1e-24 Score=186.80 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=164.0
Q ss_pred CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCC----CCCCcc----eeeecccccc
Q 016458 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK----DGNLPV----SRMLSGHKGY 160 (389)
Q Consensus 89 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~----~~~~~~~~~~ 160 (389)
+.+++|+... . .+...+..+++++++.++++++.++ +++|+....... ...... ......+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688876431 1 2334578899999999999999888 888875421100 000000 0111235678
Q ss_pred eEEEEEeeCCCcEEE----EeeCCCeEEEEeCCCC--------ee---EEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 161 VSCCQYVPDEDTHLI----TSSGDQTCVLWDITTG--------LR---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 161 v~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
|.+++|+|++ ++|+ +++.|+.|++||+.++ +. ...+ .+|...|.+++|+|..+++|+++
T Consensus 95 v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 95 IHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-----KDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp EEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-----CSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-----CCCCCceEEEEECCCCCCEEEEE
Confidence 9999999998 5677 7889999999998764 11 2222 56889999999999658999999
Q ss_pred eCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEE
Q 016458 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSI 303 (389)
Q Consensus 226 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~ 303 (389)
+.||.|++||+++. .......+|...|.+++|+|+|++|++|+.||.|++||++ +.....+..+.. ..+...+.++
T Consensus 169 s~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 169 LADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp ETTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred ECCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 99999999999987 5555666788999999999999999999999999999998 555554433221 1122368999
Q ss_pred EeCCCCCEEEEE-ecCC------cEEEEEcccc
Q 016458 304 AFSISGRLLFAG-YSNG------DCYVWDTLLA 329 (389)
Q Consensus 304 ~~~~~~~~l~~~-~~dg------~i~i~d~~~~ 329 (389)
+|++++.++++. ..+| .+++|++...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999988877553 3443 3899998754
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=197.20 Aligned_cols=320 Identities=9% Similarity=-0.006 Sum_probs=207.0
Q ss_pred CCCCcccCCCcceeeeecccccC---cEEEEEEcCCCCeEEEEec---------CCcEEEEeCCCCCeeEEEeeCCCcEE
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAG---KVYSLDWTSERNRIVSASQ---------DGRLIVWNALTSQKTHAIKLPCAWVM 113 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~v~ 113 (389)
+.....|+.........+.+|.. .|.+++|||||++|++++. ++.|++||+.+++.+..... ...+.
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~ 113 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQ 113 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBC
T ss_pred CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-Ccccc
Confidence 34455677777777767766654 4999999999999998876 78999999998876211111 24588
Q ss_pred EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC--Ccceeeecccccc---------eEEEEEeeCCCcEEEEeeCCC-
Q 016458 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHKGY---------VSCCQYVPDEDTHLITSSGDQ- 181 (389)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg- 181 (389)
.++|+|+|+.|+.+. ++.|++|++.++...... ......+.++... ..++.|+|+| +.|++++.|.
T Consensus 114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~ 191 (719)
T 1z68_A 114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDT 191 (719)
T ss_dssp CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECT
T ss_pred cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCC
Confidence 899999999999886 789999999875421000 0000011122211 2489999998 5677766442
Q ss_pred ---------------------------------eEEEEeCCCCeeE---EEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 182 ---------------------------------TCVLWDITTGLRT---SVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 182 ---------------------------------~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
.|++||+.++... ..........+...+.+++|+| ++.++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~ 270 (719)
T 1z68_A 192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQW 270 (719)
T ss_dssp TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEE
T ss_pred CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEE
Confidence 7889999887642 1110000125677899999999 57777764
Q ss_pred eCCC----ceEEEe----CCCCCcceeEE----eeeccceE-----EEEEecCCCEEEE--EecCC--eEEEEECCCCce
Q 016458 226 SCDS----TARLWD----TRVASRAVRTF----HGHEGDVN-----TVKFFPDGNRFGT--GSDDG--TCRLFDIRTGHQ 284 (389)
Q Consensus 226 ~~dg----~i~i~d----~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~ 284 (389)
...+ .|.+|| ..++ +....+ ..|...+. .+.|+|||+.|+. ...+| .|.+||+.+++
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~- 348 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN- 348 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred eccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence 4332 488899 6654 333222 35666666 8899999996654 44555 57777877665
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEccc--ce-EEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLL--AK-VVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
...+.... ..+..+.++ +++.|+..+.+ +..++|.+.. +. ....+.....+|...+..+.|+|+++
T Consensus 349 ~~~lt~~~-----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 349 AIQITSGK-----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp CEECSCSS-----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred eEecccCc-----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence 33332211 136677777 77777766654 7888888764 32 12333211123666788999999998
Q ss_pred eEEee-eCC--CeeEEeecceecccCcc
Q 016458 357 ALCTG-SWD--TNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 357 ~l~~~-~~d--g~i~i~~~~W~~~~~~~ 381 (389)
+++.. +.+ ..+.+ |++.+|+.
T Consensus 423 ~l~~~~s~~~~p~~~l----~d~~~g~~ 446 (719)
T 1z68_A 423 YYALVCYGPGIPISTL----HDGRTDQE 446 (719)
T ss_dssp SEEEEECCBSSCEEEE----ECSSSCCE
T ss_pred EEEEEcCCCCCCeEEE----EECCCCCE
Confidence 87753 333 45677 99888763
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=9.9e-24 Score=198.12 Aligned_cols=276 Identities=12% Similarity=0.076 Sum_probs=191.1
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC---cEEEEEECCCCcEEEEecC---------CCcEEEEeCC
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGL---------DSVCSIFNLN 139 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~vw~~~ 139 (389)
+++|+|+++++++ +.|++|++||..+++....+..+.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 4699999999999988776665533 3889999999999998876 6899999998
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCC------------
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA------------ 207 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------ 207 (389)
++.... ...+ ...+..++|+|+| +.|+.+. ++.|++||+.++....... .++..
T Consensus 99 ~g~~~~-----~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~----~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 99 NGEFVR-----GNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITF----NGRENKIFNGIPDWVYE 164 (719)
T ss_dssp TTEECC-----SSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCC----CCBTTTEEESSCCHHHH
T ss_pred CCcccc-----ceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEec----CCCcCCeEcccccceee
Confidence 754200 0111 2457889999998 5666664 7899999999887654331 12211
Q ss_pred -----CeeEEEeeCCCCcEEEEeeCCC----------------------------------ceEEEeCCCCCcce-----
Q 016458 208 -----DVLSVSISGSNSRMFVSGSCDS----------------------------------TARLWDTRVASRAV----- 243 (389)
Q Consensus 208 -----~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~----- 243 (389)
...+++|+| +++.|++++.|. .|++||+.++ ...
T Consensus 165 ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~ 242 (719)
T 1z68_A 165 EEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEV 242 (719)
T ss_dssp HHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEEC
T ss_pred eecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEc
Confidence 125899999 888888877542 7889999866 321
Q ss_pred ---eEEeeeccceEEEEEecCCCEEEEEecC----CeEEEEE----CCCCceeeEee---ccCCCCCCCCee-----EEE
Q 016458 244 ---RTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTGHQLQVYY---QQHGENEIPHVT-----SIA 304 (389)
Q Consensus 244 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~~~i~-----~~~ 304 (389)
..+.+|...+..++|+||++++++.... ..|.+|| +.+++...... ..+ ...+. .+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~ 318 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR----TGWAGGFFVSTPV 318 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS----SSCSSSSSCCCCE
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC----CceEccccCCccE
Confidence 1123477789999999998777764432 3488999 77765544331 111 11243 788
Q ss_pred eCCCCCEEEE--EecCC--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC-----CeeEEeeccee
Q 016458 305 FSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKVNLGFWR 375 (389)
Q Consensus 305 ~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~~~~W~ 375 (389)
|+|||+.++. +..+| .|.+||+.+++ ...+ ..+...+..+.++ +++.|+..+.+ +..++ |.
T Consensus 319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l----~~ 388 (719)
T 1z68_A 319 FSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNI----YR 388 (719)
T ss_dssp ECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEE----EE
T ss_pred ECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec----ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEE----EE
Confidence 9999996554 44555 56777876665 3344 3455567777777 78777776655 78888 88
Q ss_pred ccc
Q 016458 376 VQE 378 (389)
Q Consensus 376 ~~~ 378 (389)
+..
T Consensus 389 ~~~ 391 (719)
T 1z68_A 389 ISI 391 (719)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=3.3e-23 Score=189.74 Aligned_cols=236 Identities=10% Similarity=0.029 Sum_probs=173.0
Q ss_pred CCcEEEEEECCCCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeC---CCeE
Q 016458 109 CAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTC 183 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i 183 (389)
..+|.+++|+|||+.|++++. ||.+.||++.++. ...+..|. ..+..+.|+|+ +++++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC--eEEEEeccCCCCcce
Confidence 356999999999999998877 9999999985532 23344444 68899999997 56776664 4545
Q ss_pred EEEeCCC---CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458 184 VLWDITT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 184 ~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (389)
.+|.+.. +... .+ .....+...+|+|+....+++...++.+.+||+.++ +.. .+..+.. .+++|+|
T Consensus 91 ~l~~~~~~~~g~~~-~l------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~-~l~~~~~--~~~~~sp 159 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RL------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLR-ELARLPG--FGFVSDI 159 (582)
T ss_dssp EEEEEETTSTTCCE-EC------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEE-EEEEESS--CEEEEEE
T ss_pred EEEEEeccCCCccc-cc------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEE-EeecCCC--ceEEECC
Confidence 5554432 2222 32 122234466888855455555555666679999866 333 3333433 8899999
Q ss_pred CCCEEEEEecC----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC--cEEEEEcccceEEEe
Q 016458 261 DGNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLN 334 (389)
Q Consensus 261 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~ 334 (389)
||++|++++.+ +.|++||+.+++.. .+.... ..+..++|+|||+.|+++..++ .|++||+.+++.. .
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~-----~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE-----GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS-----CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC-----CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 99999988877 78999999887754 333222 2479999999999999888888 8999999988877 5
Q ss_pred ecCcCCCCCCCeeEEE--------ECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 335 LGSLQNSHEGRITCLG--------LSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 335 ~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+ ..|...+..++ |+|||.++++++.||.+++ |++ |+..
T Consensus 233 ~----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l----~~~--g~~~ 278 (582)
T 3o4h_A 233 L----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV----FID--GERV 278 (582)
T ss_dssp C----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE----EET--TEEE
T ss_pred c----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE----EEE--CCee
Confidence 5 67777777777 9999999999999999999 998 6544
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.91 E-value=7.5e-22 Score=169.91 Aligned_cols=285 Identities=9% Similarity=0.047 Sum_probs=184.0
Q ss_pred eEEEEecC--CcEEEEeC--CCCCeeEEEe---eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC-CCCCCCCCCccee
Q 016458 81 RIVSASQD--GRLIVWNA--LTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN-SPTDKDGNLPVSR 152 (389)
Q Consensus 81 ~l~~~~~d--g~v~iw~~--~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~ 152 (389)
.|++|+.. +.|.+|++ .+++....-. .....+..++|+|++++|++++.+ .|.+|++. ++. ...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-------~~~ 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-------IVH 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-------EEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-------EEE
Confidence 35555543 46887765 4454332211 123467899999999999988887 99999986 432 111
Q ss_pred eecc-cccceEEEEEeeCCCc-EEEEee-------------CCCeEEEEeCC-CCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 153 MLSG-HKGYVSCCQYVPDEDT-HLITSS-------------GDQTCVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 153 ~~~~-~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.... ..+.+.+++|+|++.. +++++. .+|.+.+|++. ++.....+... ...+...+.+++|+|
T Consensus 76 ~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~sp 154 (365)
T 1jof_A 76 EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDP 154 (365)
T ss_dssp EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECT
T ss_pred eeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECC
Confidence 1110 0123455889999843 344553 68999999997 45544333100 012456789999999
Q ss_pred CCCcEEEEee-CCCceEEEeCC-CCCcc--eeEEe--eeccceEEEEEecCCCEEEEEec-CCeEEEEECC--CCceee-
Q 016458 217 SNSRMFVSGS-CDSTARLWDTR-VASRA--VRTFH--GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ- 286 (389)
Q Consensus 217 ~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~- 286 (389)
++++++++. .++.|++||+. ++ +. +..+. .|...+..++|+|+|+++++++. ++.|.+|++. +++...
T Consensus 155 -dG~~l~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 155 -TETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp -TSSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred -CCCEEEEEcCCCCEEEEEEECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 777676655 46799999997 44 32 22232 13556899999999999988774 7899999865 454321
Q ss_pred --EeeccCC--CCCCC------CeeEEE-eCCCCCEEEEEecCC------cEEEEEcc-cceEEEeecCcCCCCCCCeeE
Q 016458 287 --VYYQQHG--ENEIP------HVTSIA-FSISGRLLFAGYSNG------DCYVWDTL-LAKVVLNLGSLQNSHEGRITC 348 (389)
Q Consensus 287 --~~~~~~~--~~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~ 348 (389)
.+..... ..+.. .+..++ |+|||++|++++.+. .|.+|++. +++........ ..+...+..
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-~~~~~~~~~ 311 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHS 311 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTC
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee-ecCCCCccc
Confidence 1211110 01111 378899 999999988776433 79999996 56544311000 234455678
Q ss_pred EEECC---CCCeEEeeeCC-CeeEEeecceecccCcc
Q 016458 349 LGLSA---DGSALCTGSWD-TNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 349 ~~~~~---~~~~l~~~~~d-g~i~i~~~~W~~~~~~~ 381 (389)
++|+| ||++|++++.+ +.|.+ |+++.+.+
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v----~~~~~~~l 344 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEI----YRWKDEFL 344 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEE----EEEETTEE
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEE----EEEchhhC
Confidence 99999 89999998875 89999 99987654
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=9.4e-22 Score=168.39 Aligned_cols=275 Identities=13% Similarity=0.035 Sum_probs=184.8
Q ss_pred CCCCCcccCCCcceeeeeccccc-CcEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeCC------CcEEEEE
Q 016458 45 QGRAPVSFGPTDLVCCRTLQGHA-GKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPC------AWVMTCA 116 (389)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~ 116 (389)
.......|++...+....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+..+. ..+..++
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~ 98 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 98 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceE
Confidence 34456678887777777776554 2578999999998655 55578999999999998887776443 2377899
Q ss_pred ECCCCcEEEEecCC------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEE
Q 016458 117 FSPTGQSVACGGLD------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 184 (389)
Q Consensus 117 ~~~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 184 (389)
|+|+|+++++++.+ +.|.+||+.++... ....... +...+.+++|+|++. +++++. .|.
T Consensus 99 ~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~~~~s~dg~--l~~~~~--~i~ 169 (349)
T 1jmx_B 99 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTFP-MPRQVYLMRAADDGS--LYVAGP--DIY 169 (349)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEEE-CCSSCCCEEECTTSC--EEEESS--SEE
T ss_pred ECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----ceeeecc-CCCcccceeECCCCc--EEEccC--cEE
Confidence 99999999998865 89999999864311 1122222 334688899999984 444433 499
Q ss_pred EEeCCCCeeEEEecCcccCCC---------------CC----CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE
Q 016458 185 LWDITTGLRTSVFGGEFQSGH---------------TA----DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~---------------~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 245 (389)
+||+.+++....+........ .. ....++++++.............+..+|..+.......
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 999999988776632110000 00 22334444311100000000111222444443222223
Q ss_pred EeeeccceEEEEEec-CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458 246 FHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (389)
Q Consensus 246 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (389)
+..+...+..++|+| ++++++++ ++.|.+||+.+++....+.... .+.+++|+|+|++|++++.++.|.+|
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC------CccceEECCCCCEEEEecCCCeEEEE
Confidence 333556788999999 99999988 8899999999988777665432 26789999999988888889999999
Q ss_pred EcccceEEEeec
Q 016458 325 DTLLAKVVLNLG 336 (389)
Q Consensus 325 d~~~~~~~~~~~ 336 (389)
|+.+++.+..+.
T Consensus 322 d~~~~~~~~~~~ 333 (349)
T 1jmx_B 322 NPDTLEKVKNIK 333 (349)
T ss_dssp ETTTTEEEEEEE
T ss_pred eccccceeeeee
Confidence 999999888773
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.90 E-value=2.2e-22 Score=175.42 Aligned_cols=288 Identities=13% Similarity=0.016 Sum_probs=187.6
Q ss_pred CCCcceeeeecccccCc-----EEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE
Q 016458 53 GPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV 124 (389)
Q Consensus 53 ~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 124 (389)
++......+.+..+... +.+++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|+|+.|
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence 44455555666655443 7889999999998876543 468888988876544333232222337899999999
Q ss_pred EEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEE-------------------EEEeeCCCcEEEEe-----eCC
Q 016458 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLITS-----SGD 180 (389)
Q Consensus 125 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~d 180 (389)
+.++.++.|++|++.++. .......+...... +.|+|++. .++.+ ..+
T Consensus 96 ~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPT 167 (396)
T ss_dssp EEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCC
T ss_pred EEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCc
Confidence 999989999999998754 22222222221111 24566653 33322 466
Q ss_pred CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeee--ccc
Q 016458 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH--EGD 252 (389)
Q Consensus 181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~ 252 (389)
..|.+||+.+++..... .+...+..+.|+|.++..|+..+.+ ..|.+||+... . ...+..+ ...
T Consensus 168 ~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~ 239 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGES 239 (396)
T ss_dssp EEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEE
T ss_pred ceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCcc
Confidence 78999999988765554 3456788999998445555544433 46888888644 2 2233222 235
Q ss_pred eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEe----------
Q 016458 253 VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY---------- 316 (389)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~---------- 316 (389)
+..++|+|+|++|+.++.+ +.|++||+.+++....... . ... +.|+| +|+++++++
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P------PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C------SEE-EEEECSSSSEEEEEECCC-------
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C------CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 7889999999988777654 4599999988765443221 1 133 88999 999888754
Q ss_pred ------cCCcEEEEEcccceEEEeecCcCCCCCC-----------CeeEEEECCCCCeEEeeeC-CCeeEE
Q 016458 317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLKV 369 (389)
Q Consensus 317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-dg~i~i 369 (389)
.++.|++||+.+++.. .+ ..+.. .+..++|+|||+.|+.++. ++...|
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQ-KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCC-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred cccccCCCCcEEEEecccCceE-Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 2468999999877643 22 12222 2567889999998887765 566666
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.90 E-value=1.5e-20 Score=160.94 Aligned_cols=284 Identities=12% Similarity=0.073 Sum_probs=201.1
Q ss_pred CCcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC------CCc
Q 016458 48 APVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP------CAW 111 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~------~~~ 111 (389)
....|++...+...++..+..+ .++|+||++++++++ .++.|.+||..+++.+..+... ...
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 3446677777777788877766 899999999999886 3678999999999998888754 234
Q ss_pred EEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458 112 VMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
...++++|+|++|+++.. ++.|.+||+.+.+ .... +. .. ....+.+.|++...+++.+.||.+.+|++
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 667999999999998864 5899999998743 3333 22 21 22335677877678889999999999998
Q ss_pred CC-CeeEEEecC-cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcce-eEEee------e----ccceEE
Q 016458 189 TT-GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG------H----EGDVNT 255 (389)
Q Consensus 189 ~~-~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~------~----~~~i~~ 255 (389)
.. ++....... ........+ ..+.+.+ ++..++..+.++.+.++|+......+ ..+.. + ......
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred CCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence 65 444322110 000111122 1223345 44555666678999999987542211 11110 0 111223
Q ss_pred EEEecCCCEEEEEec-----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEE
Q 016458 256 VKFFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (389)
Q Consensus 256 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (389)
++|+|+++.++++.. .+.|.+||+.+++.+..+.... ...++|+|+|++|++++. +.|.+|
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-CeEEEE
Confidence 789999888877653 3589999999998888775532 589999999999999887 999999
Q ss_pred Ecccc--eEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 325 DTLLA--KVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 325 d~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
|..++ +.+..+ ..+......++++|+|.
T Consensus 331 D~~t~~l~~~~~i----~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTI----EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence 99999 999887 46677788999999985
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=6.1e-21 Score=163.42 Aligned_cols=267 Identities=11% Similarity=0.067 Sum_probs=187.6
Q ss_pred cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC----------CCcEEEEeCCCCCCCCCCCcceeeecc
Q 016458 87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSG 156 (389)
Q Consensus 87 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~ 156 (389)
.|+.|.+||..+++.+..+..+..+ .++|+|++++++++.. ++.|.+||..+.+ ....+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------FEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-------EEEEEEE
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-------EEEEEEc
Confidence 4789999999999998888776554 8999999999998862 5679999987643 3333322
Q ss_pred ------cccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 157 ------HKGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 157 ------~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
+......++++|++ ++|+++. . ++.|.+||+.+++.+.. +. . .....+.+.|.....+++.+.
T Consensus 100 ~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-----~--~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTA-----A--AGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGG-----G--TTEEEEEECTTSSSEEEEEET
T ss_pred CccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEec-----C--CCcceeEEcCCCCeeEEEECC
Confidence 22346678999998 5666654 3 68999999999988777 52 1 122335567755578888899
Q ss_pred CCceEEEeCCCCCcceeEE------eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee--EeeccC-----CC
Q 016458 228 DSTARLWDTRVASRAVRTF------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQH-----GE 294 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~-----~~ 294 (389)
||.+.+|+.....+..... .....+ ..+.++|++..++..+.++.|.++|+....... .+.... ..
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 9999999986533333111 111122 233446778788888889999999987554221 111000 00
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec-----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 295 NEIPHVTSIAFSISGRLLFAGYS-----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
........++|+|+++.++++.. .+.|.+||+.+++.+..+ ..+. +.+++|+|||++|++++.
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i----~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI----PGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE----ECTT--CCEEEEETTTTEEEEECS
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE----ecCC--eeEEEECCCCCEEEEeCC
Confidence 00001223789999988887654 347999999999999988 4454 899999999999998887
Q ss_pred CCeeEEeecceecccC--ccc
Q 016458 364 DTNLKVNLGFWRVQEG--ALS 382 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~--~~~ 382 (389)
+.|.+ ||..++ ++.
T Consensus 325 -~~v~v----~D~~t~~l~~~ 340 (361)
T 2oiz_A 325 -GNVNV----YDISQPEPKLL 340 (361)
T ss_dssp -SCEEE----EECSSSSCEEE
T ss_pred -CeEEE----EECCCCcceee
Confidence 99999 999999 654
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.89 E-value=4.4e-21 Score=178.52 Aligned_cols=299 Identities=13% Similarity=0.062 Sum_probs=200.2
Q ss_pred eeecccccCcEEEEEEcCCCCeEEEE--ecCCcEEEEeCCCCCeeEEEeeCCCcEE---------EEEEC--CCCcE-EE
Q 016458 60 CRTLQGHAGKVYSLDWTSERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVM---------TCAFS--PTGQS-VA 125 (389)
Q Consensus 60 ~~~l~~h~~~v~~~~~~~~~~~l~~~--~~dg~v~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~ 125 (389)
...+.+|...|..++|+++.-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34677899999999999886666666 5588999999655555666666655555 55555 99998 77
Q ss_pred EecC-CCcEEEEeCC--C-CCCCCCCCcceeeecc-----cccceEEEEEeeCCCcEEEEeeCC----------CeEEEE
Q 016458 126 CGGL-DSVCSIFNLN--S-PTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD----------QTCVLW 186 (389)
Q Consensus 126 ~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iw 186 (389)
.++. +..|.++++. . +. ...+.. |...+..++|+|+| +.|++++.+ ..|++|
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV--------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC--------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCC--------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEE
Confidence 6654 5566666665 1 21 223333 66788999999998 567776665 589999
Q ss_pred eCCC------CeeEEEecCcccC-CCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCC-CC--cceeEEee
Q 016458 187 DITT------GLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRV-AS--RAVRTFHG 248 (389)
Q Consensus 187 d~~~------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~-~~--~~~~~~~~ 248 (389)
|+.+ +.. ..+ . .+...+..++|+| +++.|+.++.+ ..|++||+.. +. ........
T Consensus 167 ~~~~~~~~~~~~~-~~l-----~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 167 PLDGSAAADRSAV-REL-----SDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp ETTSTTTTCGGGS-EES-----SCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ECCCCccccCCce-eEE-----EecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 9988 543 333 3 4456788899999 77888776644 3799999983 31 23333334
Q ss_pred eccceEEEEEecCCCEEEEEecCC--eEEEEECCCCceeeEeeccCCC---CCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 249 HEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
|...+..++|+|||++++++..++ .|.+||+.+++........... .-...+..++|+|+++++++++. +.++|
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 467899999999999888888888 6777777666543332211110 00011467899999999999988 99999
Q ss_pred E--EcccceEEEeecCcCCCCCCCeeEE-EECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 324 W--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 324 ~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
| |+.+++ +..+ ..|...+..+ +++++.-++++++.+....++. |++.++++.
T Consensus 319 ~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~--~d~~~g~~~ 373 (662)
T 3azo_A 319 GILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE--LDTVTGRAR 373 (662)
T ss_dssp EEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE--EETTTCCEE
T ss_pred EEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE--EECCCCceE
Confidence 9 555555 5555 5667777777 5554444445555555444411 666677654
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=8.9e-21 Score=163.21 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=168.1
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC-CCCeeEEEeeC-CCcEEEEEECCCCcE--EEEec-------------
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKLP-CAWVMTCAFSPTGQS--VACGG------------- 128 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~------------- 128 (389)
+...+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 77655433321 123556899999994 45553
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceeeec----ccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCC-CCeeEEEecCccc
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDIT-TGLRTSVFGGEFQ 202 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~ 202 (389)
.+|.+.+|++.... . ....+. .+...+.+++|+|+| ++++++. .++.|++||+. +++.........
T Consensus 117 ~~g~v~v~~~~~~g----~--~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~- 188 (365)
T 1jof_A 117 FAGYGNVFSVSETG----K--LEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDA- 188 (365)
T ss_dssp SCCEEEEEEECTTC----C--EEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-
T ss_pred CCceEEEEccCCCC----c--CcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEec-
Confidence 68999999997421 1 222222 245678999999998 4555554 47899999998 665432211000
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCC-Ccce---eEEe-------eecc------ceEEEE-EecCCC
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVA-SRAV---RTFH-------GHEG------DVNTVK-FFPDGN 263 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~---~~~~-------~~~~------~i~~~~-~~~~~~ 263 (389)
..+...+..++|+| +++++++++. ++.|.+|++... .... ..+. +|.. .+..++ |+|||+
T Consensus 189 ~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 189 PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence 12356689999999 7777766654 789999987531 1221 1222 1121 478999 999999
Q ss_pred EEEEEecCC------eEEEEECC-CCceeeEe--eccCCCCCCCCeeEEEeCC---CCCEEEEEecC-CcEEEEEcccc
Q 016458 264 RFGTGSDDG------TCRLFDIR-TGHQLQVY--YQQHGENEIPHVTSIAFSI---SGRLLFAGYSN-GDCYVWDTLLA 329 (389)
Q Consensus 264 ~l~~~~~dg------~i~i~d~~-~~~~~~~~--~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d-g~i~i~d~~~~ 329 (389)
+|+++..+. .|.+|++. +++..... .... ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~----~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP----TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS----SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC----CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 988776432 89999996 55543321 1111 11256789999 89999998864 89999998765
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=1.2e-20 Score=177.32 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=179.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-----EEEEEECCCCcEEEEecCC---------CcEE
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---------SVCS 134 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~ 134 (389)
...+++|+||+++++++ ||+|++||+.+++....+..+... ...+.|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999888886 899999999999987777766532 2347899999999998875 5677
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--------
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT-------- 206 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------- 206 (389)
+||+.++. ...+..|.+.+...+|+|+| +.|+.+ .++.|++||+.++....... .++.
T Consensus 96 ~~d~~~~~--------~~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~----~g~~~~~~~g~~ 161 (740)
T 4a5s_A 96 IYDLNKRQ--------LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITW----TGKEDIIYNGIT 161 (740)
T ss_dssp EEETTTTE--------ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCS----CCBTTTEEESBC
T ss_pred EEECCCCc--------EEEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcC----CCCccceecCcc
Confidence 99998854 22355667789999999998 456665 56899999998887554321 1221
Q ss_pred ---------CCeeEEEeeCCCCcEEEEeeCCC------------------------------------ceEEEeCCC---
Q 016458 207 ---------ADVLSVSISGSNSRMFVSGSCDS------------------------------------TARLWDTRV--- 238 (389)
Q Consensus 207 ---------~~v~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~--- 238 (389)
.....+.|+| +++.|+.++.|. .|++||+.+
T Consensus 162 ~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred cccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 1224589999 777777664321 478888886
Q ss_pred CCc-ceeEEee------eccceEEEEEecCCCEEEEEec----CCeEEEEECCCCc----ee--eEe-eccCCC-CCCCC
Q 016458 239 ASR-AVRTFHG------HEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGH----QL--QVY-YQQHGE-NEIPH 299 (389)
Q Consensus 239 ~~~-~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~-~~~~~~-~~~~~ 299 (389)
+.. ....+.. |...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ...+.. .....
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~ 320 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence 421 2333432 6677899999999997665543 3479999999887 21 111 111110 00000
Q ss_pred eeEEEeCCCCCEEE-EEe-cCC--cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 300 VTSIAFSISGRLLF-AGY-SNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 300 i~~~~~~~~~~~l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
.....|+|||+.++ ..+ .+| .|++||+.+++... + ......|..+.. +|++.|+..+
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-l----T~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-I----TKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-S----CCSSSCEEEEEE-ECSSEEEEEE
T ss_pred CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-c----ccCCEEEEEEEE-EeCCEEEEEE
Confidence 23678999999776 554 344 58888887665543 3 233445555542 3355554433
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.88 E-value=1e-19 Score=154.67 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=192.9
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 357788899988877777888899999 355666667677778999999999988888889999999987643
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCC----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
.......+...+.++++++++ .++++...+ +.|.+||..++.....+.. ......+..++++| ++++++
T Consensus 78 --~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~i~~d~-~g~l~v 150 (333)
T 2dg1_A 78 --IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDS-KGGFYF 150 (333)
T ss_dssp --EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECT-TSCEEE
T ss_pred --EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc---CccCCcccceEECC-CCCEEE
Confidence 222222456779999999987 566666555 6899999988766533321 12345789999998 677777
Q ss_pred EeeC------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEE-EecCCeEEEEECCC-CceeeEee---ccC
Q 016458 224 SGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRT-GHQLQVYY---QQH 292 (389)
Q Consensus 224 ~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~~~~~---~~~ 292 (389)
+... .+.|..+|.... .+..+..+...+..++|+|+++.|+. .+.++.|.+||+.+ +.....+. ...
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EeccccccCCCceEEEEeCCCC--EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 6543 355666665533 23333344456789999999986654 45678999999864 33322111 000
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--CCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
... ...+..++++++|+++++...++.|.+||. .++.+..+.... .+|...+.+++|+||++.|+.++.++
T Consensus 229 ~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 229 FTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 000 124788999999998887777889999998 466655552110 11223689999999987777666553
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=2.9e-19 Score=151.41 Aligned_cols=252 Identities=12% Similarity=0.145 Sum_probs=184.4
Q ss_pred cCcEEEEEEcCCCCeEEEEecC------------------------CcEEEEeCCCCCeeEEEe-eCCCcEEEEEECCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQD------------------------GRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTG 121 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 121 (389)
-+.+.+++++|+|+++++...+ ++|.+||..+++....+. .+...+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888777 479999998888876554 233578999999999
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---------cccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCC
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---------SGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTG 191 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 191 (389)
+++++...++.|++|+...... ....+ ..+-.....++++|++..++++.+ .++.|++|| .++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEG------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSC------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CEEEEECCCCEEEEEeCCCCeE------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 9888888899999999865310 11222 234456889999994336777775 699999999 556
Q ss_pred eeEEEecCccc-----CCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEec----
Q 016458 192 LRTSVFGGEFQ-----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP---- 260 (389)
Q Consensus 192 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~---- 260 (389)
.....+..... ..+......++++|..+.++++...++.|++||..++ +.+..+. .+...+..++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecCCEEE
Confidence 66665521100 1122348899999944888888888999999999865 5565553 3455788899999
Q ss_pred --CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 261 --DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 261 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
+++..++...+..|++||..+++.+..+... ......+..++++|+|.++++...++.|++|++..
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333333344568999999999888776421 22333589999999998888888899999999753
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.87 E-value=6.3e-19 Score=150.70 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=175.7
Q ss_pred cEEEEEEcCCCCeEEEEe---------cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---C--cEE
Q 016458 69 KVYSLDWTSERNRIVSAS---------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S--VCS 134 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~ 134 (389)
.+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|+|+.|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4677778 888877542 25689999998877543 3 457889999999999887653 3 377
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC---------------------------CCeEEEEe
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------------------------DQTCVLWD 187 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~i~iwd 187 (389)
+|++.++. .. .+..+.. +..+.|+|++. .|+.++. ...|.+||
T Consensus 89 ~~~~~~g~-------~~-~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 89 VADLETLS-------SK-KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEETTTTE-------EE-EEEEESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred EEECCCCc-------eE-EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 77776533 22 2222334 89999999984 5555442 35799999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-------ceEEEeCCCCCcceeEEeeeccceEEEEEec
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (389)
+.+++....+ .. . .+..+.|+| ++ +++++..++ ...+|.+. . .....+..+ ..+..+ +|
T Consensus 159 ~~~~~~~~~l-----~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~-~~~~~~--sp 224 (347)
T 2gop_A 159 TESEEVIEEF-----EK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE-D-GKEEKMFEK-VSFYAV--DS 224 (347)
T ss_dssp TTTTEEEEEE-----EE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE-T-TEEEEEEEE-ESEEEE--EE
T ss_pred CCCCeEEeee-----cC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC-C-CceEEeccC-cceeeE--CC
Confidence 9988774444 22 3 788999999 66 777775542 33455444 3 234444445 555544 99
Q ss_pred CCCEEEEEecC--------CeEEEEECCCCceeeEeeccCCCCCCCCeeE-EEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 261 DGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 261 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
+|++|+.++.+ ..|.+|| +++.. .+... +...+.. +.|+ ++ ++++++.++.+++| +.+++.
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~----~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDE----VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTT----CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceE-ecccc----CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence 99998887754 3688888 44432 22221 1224675 8999 88 88899999999999 876655
Q ss_pred EEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCee-EEeecceecccCcc
Q 016458 332 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KVNLGFWRVQEGAL 381 (389)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~i~~~~W~~~~~~~ 381 (389)
...+ .+...|.+++|+| .++++++.++.. .| |.+. |+.
T Consensus 295 ~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l----~~~~-g~~ 333 (347)
T 2gop_A 295 KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLREL----FTWD-GEE 333 (347)
T ss_dssp EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEE----EEES-SSE
T ss_pred EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHh----eEeC-CcE
Confidence 4333 3477899999999 677777777765 77 7776 543
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.87 E-value=1.5e-18 Score=144.13 Aligned_cols=243 Identities=12% Similarity=0.159 Sum_probs=177.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee------CCCcEEEEEE-CCCCcEEEEecC-CCcEEEE
Q 016458 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL------PCAWVMTCAF-SPTGQSVACGGL-DSVCSIF 136 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~vw 136 (389)
+|-..+.+++++++++++++...++.|.+||.. ++....+.. +...+..+++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 566779999999999988888889999999976 666655542 2246889999 577777766643 7899999
Q ss_pred eCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee
Q 016458 137 NLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (389)
+... . ....+ ..+...+.++++.+++ +++++...++.|.+||.. +.....+.. ..+...+..++++
T Consensus 106 d~~g-~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 106 NQYG-Q-------FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVN 172 (286)
T ss_dssp CTTS-C-------EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEEC
T ss_pred CCCC-c-------EEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEEC
Confidence 9443 2 22223 2334568899999987 677777778999999965 444444421 1344568999999
Q ss_pred CCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee--ccceEEEEEecCCCEEEEEecCC-eEEEEECCCCceeeEeeccC
Q 016458 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 216 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 292 (389)
+ +++++++...++.|++||... ..+..+..+ ...+..++++|+|+++++...++ .|.+||. +++.+..+....
T Consensus 173 ~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 173 D-KQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp S-SSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred C-CCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 8 778888877889999999753 444555433 25688999999999888888776 9999995 466665554422
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
. ...+..++++|+|+++++ +.++.|++|++...
T Consensus 249 ~---~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 K---HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp C---CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred C---CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 1 123678999999986666 67899999997543
No 173
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.86 E-value=3.8e-17 Score=136.52 Aligned_cols=287 Identities=7% Similarity=-0.022 Sum_probs=196.8
Q ss_pred ecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 62 ~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
.+..+...+.+++++++|+++++...++.|.+||.. ++.. .+. .....+..+++++++.++++...++.|..|+..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 344566789999999999877776667899999987 5433 332 234679999999999988887778889999875
Q ss_pred CCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
. . . ...........+..+++.+++ .++++...++.|..||. ++....... ......+..+++.+ ++
T Consensus 87 g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~----~~~~~~~~~i~~~~-~g 152 (299)
T 2z2n_A 87 G-I-----I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYEL----PNKGSYPSFITLGS-DN 152 (299)
T ss_dssp S-C-----E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECT-TS
T ss_pred C-c-----E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecC----CCCCCCCceEEEcC-CC
Confidence 2 1 1 111112244578899999887 66666667889999998 554433221 22345688999998 67
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (389)
+++++...++.|..||. ++ ..... .......+.++++++++.++++...++.|.+||. ++.... +... ....
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---~~~~ 225 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP---TPNA 225 (299)
T ss_dssp CEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS---STTC
T ss_pred CEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC---CCCC
Confidence 77777766789999998 43 32221 2223456889999999987777767889999998 665332 2221 1223
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
.+.+++++++|++.++...++.|..||. ++... .+.. ..+...+.++++ ++|.+.++.. .+.+.. ++..+
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~----~~~~~ 295 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGK----LTLIK 295 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEE----EEEC-
T ss_pred CceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEE----EEcCc
Confidence 4889999999986666657789999998 44432 2211 344567899999 8888776655 455666 77766
Q ss_pred Ccc
Q 016458 379 GAL 381 (389)
Q Consensus 379 ~~~ 381 (389)
+++
T Consensus 296 ~~~ 298 (299)
T 2z2n_A 296 DNM 298 (299)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=1.5e-18 Score=147.05 Aligned_cols=250 Identities=13% Similarity=0.121 Sum_probs=182.7
Q ss_pred CcEEEEEECCCCcEEEEecCC------------------------CcEEEEeCCCCCCCCCCCcceeeec-ccccceEEE
Q 016458 110 AWVMTCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCC 164 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 164 (389)
+.+.+++++|+|+++++...+ +.|.+||..++. ...... .+-..+..+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHGL 96 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceEE
Confidence 568999999999999888777 479999987644 222222 344578899
Q ss_pred EEeeCCCcEEEEeeCCCeEEEEeCCCCe-eEEEecCccc----CCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCC
Q 016458 165 QYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRV 238 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 238 (389)
++++++ +++++...++.|++||..... .+..+..... ..+......++++|.++.++++.+ .++.|++||..
T Consensus 97 a~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~- 174 (329)
T 3fvz_A 97 SIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS- 174 (329)
T ss_dssp EECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-
T ss_pred EECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-
Confidence 999988 578888889999999986542 3444421110 133446889999986677888776 68999999944
Q ss_pred CCcceeEEeee----------ccceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 239 ASRAVRTFHGH----------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 239 ~~~~~~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
+ ..+..+... -..+..++++|+ +.++++...++.|++||..+++.+..+... .....+..++|+|
T Consensus 175 g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~p 250 (329)
T 3fvz_A 175 G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYIP 250 (329)
T ss_dssp S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEET
T ss_pred C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeecC
Confidence 3 455555322 234889999998 777777788999999999988887776432 1223478899999
Q ss_pred CCCEEEE-------EecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 308 SGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 308 ~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
+..+.+ ...+..|++||..+++.+..+... ..+...+.+|+++|+|.++++...++.|++ |++..
T Consensus 251 -g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~----~~~~~ 322 (329)
T 3fvz_A 251 -GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWK----FTLTE 322 (329)
T ss_dssp -TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEE----EEEEE
T ss_pred -CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEE----EeCCc
Confidence 333333 233458999999999988887321 356677999999999988888888999999 99875
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=4e-18 Score=141.55 Aligned_cols=241 Identities=15% Similarity=0.168 Sum_probs=174.1
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee------cccccceEEEEEe-eCCCcEEEEeeC-CC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML------SGHKGYVSCCQYV-PDEDTHLITSSG-DQ 181 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~-~~~~~~l~~~~~-dg 181 (389)
..+.+++++++++++++...++.|.+|+.... ....+ .++...+..+++. +++ .++++... ++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~ 100 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTH 100 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCC
Confidence 56889999999998888888999999997642 12222 1344578899995 444 55555533 89
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEe
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFF 259 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~ 259 (389)
.|.+|| .++.....+. ..+...+..++++| +++++++...++.|.+||... ..+..+. .+...+..++++
T Consensus 101 ~i~~~d-~~g~~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 101 QIQIYN-QYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp EEEEEC-TTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEEC
T ss_pred EEEEEC-CCCcEEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEEC
Confidence 999999 5566665552 23445689999998 777888877789999999652 4444443 234568999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEcccceEEEeecCc
Q 016458 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSL 338 (389)
Q Consensus 260 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 338 (389)
|+++++++...++.|++||.. ++.+..+... .....+..++++++|+++++...++ .|.+||. .++.+..+..
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~- 246 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES- 246 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE-
T ss_pred CCCCEEEEECCCCEEEEEcCC-CCEEEEEccC---CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc-
Confidence 999988888889999999974 4555444321 1123478999999999888887775 9999995 4555555531
Q ss_pred CCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 339 QNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 339 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
......+.+++++|+|+++++ +.|+.|++ |++...
T Consensus 247 -~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v----~~~~~~ 281 (286)
T 1q7f_A 247 -KVKHAQCFDVALMDDGSVVLA-SKDYRLYI----YRYVQL 281 (286)
T ss_dssp -SSCCSCEEEEEEETTTEEEEE-ETTTEEEE----EECSCC
T ss_pred -cCCCCcceeEEECCCCcEEEE-CCCCeEEE----EEcccc
Confidence 122335789999999987776 67999999 998654
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=6.2e-20 Score=159.50 Aligned_cols=266 Identities=14% Similarity=0.070 Sum_probs=178.2
Q ss_pred EEEeCCCCCeeEEEeeCCCcEEE-----EEECCCCcEEEEecC-CCc--EEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458 92 IVWNALTSQKTHAIKLPCAWVMT-----CAFSPTGQSVACGGL-DSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (389)
Q Consensus 92 ~iw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (389)
..++..++..+..+..+...... .+|+|+|++|+.++. +|. |.+||+.++. .......+...+..
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------~~~lt~~~~~~~~~ 85 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------ATQLTEGRGDNTFG 85 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------EEECCCSSCBCSSS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------eEEeeeCCCCCccc
Confidence 34577788888888777665665 789999999998887 664 7778887644 33444455555556
Q ss_pred EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEE--eeCCCCcEEEEe----------------
Q 016458 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVSG---------------- 225 (389)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~---------------- 225 (389)
+.|+|++ +.|+.++.++.|++||+.+++..... ..+...+.... ++| ++.+++..
T Consensus 86 ~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 86 GFLSPDD-DALFYVKDGRNLMRVDLATLEENVVY-----QVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp CEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE-----ECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred eEEcCCC-CEEEEEeCCCeEEEEECCCCcceeee-----echhhcccccceeECC-CCCeeccccccCcccccccccchh
Confidence 7899998 67888888899999999998877665 33344443333 366 66666632
Q ss_pred ------eCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecC------CeEEEEECCCCceeeEeeccC
Q 016458 226 ------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 226 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~ 292 (389)
..+..|.+||+.++ + ...+..+...+..++|+| +|+.|+....+ ..|.++|+..+... .+....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 23467999999876 3 445556777899999999 99998877753 37888887755433 222211
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEec-CC----cEEEEEcccceEEEeecCcCCCCCC---CeeEEEECCCCCeEEee---
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYS-NG----DCYVWDTLLAKVVLNLGSLQNSHEG---RITCLGLSADGSALCTG--- 361 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~--- 361 (389)
....+...+|+|||+.|+..+. ++ .|++||+.+++....... ..+.. ....++|+|||+.|+..
T Consensus 236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECCC------
T ss_pred ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCcceeEeee
Confidence 1113678899999997755433 22 399999998874332110 22100 01223799999988864
Q ss_pred ------eCCCeeEEeecceecccCcccC
Q 016458 362 ------SWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 362 ------~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
..+..|.+ |++.++++..
T Consensus 311 ~~~~~~~~~~~i~~----~d~~~~~~~~ 334 (388)
T 3pe7_A 311 DSGYKIENDPFLYV----FNMKNGTQHR 334 (388)
T ss_dssp ------CCCCEEEE----EETTTTEEEE
T ss_pred ccccccCCCCEEEE----EeccCCceEE
Confidence 44668888 9999887643
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=5.4e-19 Score=166.09 Aligned_cols=321 Identities=12% Similarity=0.007 Sum_probs=196.4
Q ss_pred CCCCcccCCCcceeeeecccccCc-----EEEEEEcCCCCeEEEEecC---------CcEEEEeCCCCCeeEEEeeCCCc
Q 016458 46 GRAPVSFGPTDLVCCRTLQGHAGK-----VYSLDWTSERNRIVSASQD---------GRLIVWNALTSQKTHAIKLPCAW 111 (389)
Q Consensus 46 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~ 111 (389)
+.....|+.....+...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... +..+...
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~ 113 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN 113 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc
Confidence 345567777777777777887643 2447899999999998876 566799999887543 5556678
Q ss_pred EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC--cceeeecccc---------cceEEEEEeeCCCcEEEEeeCC
Q 016458 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSRMLSGHK---------GYVSCCQYVPDEDTHLITSSGD 180 (389)
Q Consensus 112 v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d 180 (389)
+...+|||||+.||.+. ++.|++|++.++....... .....+.++. +....+.|+||| +.|+.++.|
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d 191 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFN 191 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEc
Confidence 99999999999999884 6899999998754210000 0000111221 112358999998 456654321
Q ss_pred ------------------------------------CeEEEEeCCC---C---eeEEEecCcccCCCCCCeeEEEeeCCC
Q 016458 181 ------------------------------------QTCVLWDITT---G---LRTSVFGGEFQSGHTADVLSVSISGSN 218 (389)
Q Consensus 181 ------------------------------------g~i~iwd~~~---~---~~~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (389)
..|++||+.+ + .............+...+..++|+| +
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-d 270 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-Q 270 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-T
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-C
Confidence 1588899988 6 3332221000013667799999999 6
Q ss_pred CcEEEEeeC----CCceEEEeCCCCC-----cceeEE--eeeccceE-----EEEEecCCCEEE-EEe-cC--CeEEEEE
Q 016458 219 SRMFVSGSC----DSTARLWDTRVAS-----RAVRTF--HGHEGDVN-----TVKFFPDGNRFG-TGS-DD--GTCRLFD 278 (389)
Q Consensus 219 ~~~l~~~~~----dg~i~i~d~~~~~-----~~~~~~--~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g~i~i~d 278 (389)
+++++.... +..|.+||+.++. .....+ ..|...+. ...|+|||+.|+ ..+ .+ ..|++||
T Consensus 271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 776655433 2379999998763 012222 34555444 789999999877 555 33 3588899
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEE--EEcccceEEEeecCcCCCCCCCeeEEEE
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYV--WDTLLAKVVLNLGSLQNSHEGRITCLGL 351 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 351 (389)
+..+.... +..... .+..+.. ++++.|+..+.. +...| .++..+.....+.............+.|
T Consensus 351 ~~~~~~~~-lT~g~~-----~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~ 423 (740)
T 4a5s_A 351 IDKKDCTF-ITKGTW-----EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF 423 (740)
T ss_dssp TTCSSCEE-SCCSSS-----CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred CCCCceEe-cccCCE-----EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence 88665443 222221 2455432 346655544332 33444 4554444332342111123457889999
Q ss_pred CCCCCeEEeeeCC---CeeEEeecceecccCcc
Q 016458 352 SADGSALCTGSWD---TNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 352 ~~~~~~l~~~~~d---g~i~i~~~~W~~~~~~~ 381 (389)
+|++++++..... ..+.+ ++..+++.
T Consensus 424 S~dg~~~~~~~s~~~~p~~~l----~~~~~~~~ 452 (740)
T 4a5s_A 424 SKEAKYYQLRCSGPGLPLYTL----HSSVNDKG 452 (740)
T ss_dssp CTTSSEEEEEECSBSSCEEEE----EETTTTEE
T ss_pred CCCCCEEEEEeCCCCCCEEEE----EECCCCcE
Confidence 9999987655443 24555 77766643
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.85 E-value=3.1e-17 Score=147.34 Aligned_cols=305 Identities=14% Similarity=0.129 Sum_probs=211.5
Q ss_pred cCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCC--CCCeeEEEeeCCCcEEEEEEC----CCCcEEE
Q 016458 52 FGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFS----PTGQSVA 125 (389)
Q Consensus 52 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~ 125 (389)
+++...+.+.++.... .+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+ |+|++++
T Consensus 182 iD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~ 259 (567)
T 1qks_A 182 IDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAI 259 (567)
T ss_dssp EETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEE
T ss_pred EECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEE
Confidence 4455555666665333 46789999999999999999999999995 788888777644 46899999 6999988
Q ss_pred EecC-CCcEEEEeCCCCCCCCCCCcceeeecc----------ccc-ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458 126 CGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG----------HKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (389)
Q Consensus 126 ~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 193 (389)
++.. ++.|.++|..+.+ ....+.. |.. .+..+..+++++..++....+|.|.++|..+...
T Consensus 260 v~n~~~~~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 260 AGAYWPPQYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp EEEEETTEEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred EEEccCCeEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 7765 5899999977643 3333221 222 5778888888777777777889999999987643
Q ss_pred EEEecCcccCCCCCCeeEEEeeCCCCcEEE-EeeCCCceEEEeCCCCCcceeEEee-----eccceEEEE-EecCCCEE-
Q 016458 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHG-----HEGDVNTVK-FFPDGNRF- 265 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~-~~~~~~~l- 265 (389)
..... .........+.|+| ++++++ ++..++.|.++|..+. +.+..+.. |.+ ..+. ++|++..+
T Consensus 333 ~~v~~----i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~ 404 (567)
T 1qks_A 333 LKTTE----ISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPG--RGANFVHPTFGPVW 404 (567)
T ss_dssp EEEEE----EECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCT--TCEEEEETTTEEEE
T ss_pred ceeee----eeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCc--cceeeECCCCCcEE
Confidence 33221 12334577889999 555554 4556889999999987 55544432 322 1222 57875544
Q ss_pred EEEe-cCCeEEEEECCC-------CceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-------CCcEEEEEcccc-
Q 016458 266 GTGS-DDGTCRLFDIRT-------GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-------NGDCYVWDTLLA- 329 (389)
Q Consensus 266 ~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~- 329 (389)
+++. .++.|.++|..+ .+.+..+..... .-..+..+|+++++++... .+.|.++|+.+.
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 479 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT 479 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc
Confidence 4443 568999999987 455565544321 1245778999999998763 359999999877
Q ss_pred ----eEE-Eeec-----CcCCCCCCCeeEEEECCCCCeEEeeeC-----CCeeEEeecceecccCcccC
Q 016458 330 ----KVV-LNLG-----SLQNSHEGRITCLGLSADGSALCTGSW-----DTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 330 ----~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~~~~W~~~~~~~~~ 383 (389)
... ..+. .+ ......+..+.|+++|+.+..+.. ++.|.| +|..++++..
T Consensus 480 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v----~D~~t~~~~~ 543 (567)
T 1qks_A 480 GDGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV----VDDKTLELKH 543 (567)
T ss_dssp CSSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE----EETTTTEEEE
T ss_pred ccccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE----EECCCceEEE
Confidence 211 2221 01 112357899999999998877643 799999 9999998764
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.83 E-value=1.5e-17 Score=138.82 Aligned_cols=252 Identities=9% Similarity=0.041 Sum_probs=177.4
Q ss_pred CCeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEe
Q 016458 99 SQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (389)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 177 (389)
+..+..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.++++++++ .++++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~ 86 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACS 86 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEe
Confidence 344455555666788999999998 7788888999999998762 23344566778999999987 566666
Q ss_pred eCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE----ee-------------CCCceEEEeCCCCC
Q 016458 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GS-------------CDSTARLWDTRVAS 240 (389)
Q Consensus 178 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~ 240 (389)
..++.|.+||..+++........ .......+..++++| +++++++ |+ ..+.|..++..
T Consensus 87 ~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--- 161 (296)
T 3e5z_A 87 HGLRRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--- 161 (296)
T ss_dssp TTTTEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---
T ss_pred cCCCeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---
Confidence 66789999999887755443110 011123567899998 7788876 33 13455555554
Q ss_pred cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECC-CCce---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
..+..+..+......++|+|+++.+++.+.++.|.+|++. ++.. ...+ .. ....+..++++++|+++++.
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~----~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV----EPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC----SSSCCCSEEEBTTSCEEEEE-
T ss_pred CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC----CCCCCCeEEECCCCCEEEEc-
Confidence 2334445566678899999999998777788999999987 4443 2222 11 12236789999999866655
Q ss_pred cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEE-CCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
++.|.+||.. ++.+..+ ..+.. +++++| +|+++.|++++.++..+ .+..+.+++.
T Consensus 236 -~~~v~~~~~~-g~~~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~-----~~~~~~~~~~ 291 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFWS-----IETNVRGLEH 291 (296)
T ss_dssp -TTEEEEECTT-SCEEEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEEE-----EECSCCBCCC
T ss_pred -CCeEEEECCC-CCEEEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEEE-----EEcccccccc
Confidence 7889999986 7777666 45555 899999 68999999888876554 5666666554
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=1e-16 Score=144.04 Aligned_cols=284 Identities=11% Similarity=0.023 Sum_probs=200.3
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC--CCCCCCCCCcceeee
Q 016458 77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN--SPTDKDGNLPVSRML 154 (389)
Q Consensus 77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~ 154 (389)
+.+.++++...+++|.++|..+++.+..+.... .+..+.|+|+|+++++++.++.|.+||+. +.+ ....+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-------~v~~i 236 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-------TVAEI 236 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-------EEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-------EeEEE
Confidence 444567777789999999999999998887654 46799999999999999999999999995 322 33444
Q ss_pred cccccceEEEEEe----eCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC-----C-CCCeeEEEeeCCCCcEEEE
Q 016458 155 SGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-----H-TADVLSVSISGSNSRMFVS 224 (389)
Q Consensus 155 ~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~-~~~v~~~~~~~~~~~~l~~ 224 (389)
... .....++|+ |+|...+++...++.|.++|..+.+.+..+....... | ...+..+..++....+++.
T Consensus 237 ~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 237 KIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 432 345789999 6886555566677999999999998888774321000 1 2257788888866667777
Q ss_pred eeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeec-cCCCCCCCCeeE
Q 016458 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTS 302 (389)
Q Consensus 225 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~i~~ 302 (389)
...+|.|.++|....................+.|+|++++++++. .++.|.++|+.+++....+.. .. ..+...-..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-~Phpg~g~~ 394 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-TPHPGRGAN 394 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-SBCCTTCEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-CCCCcccee
Confidence 777899999998765222222222334567889999999987665 678999999999987776654 22 112111112
Q ss_pred EEeCCCCCEEE-EEe-cCCcEEEEEccc-------ceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC-------CCe
Q 016458 303 IAFSISGRLLF-AGY-SNGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTN 366 (389)
Q Consensus 303 ~~~~~~~~~l~-~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~ 366 (389)
-++|++..++ ++. .++.|.++|..+ .+.+.++. .....-..+..+|++++|.+... .+.
T Consensus 395 -~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~ 469 (567)
T 1qks_A 395 -FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS 469 (567)
T ss_dssp -EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred -eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCCEEEEeCCCCCeEEEecCCCCCcccCce
Confidence 2578755444 443 468999999987 66777773 32233345778999999988663 458
Q ss_pred eEEeecceecccC
Q 016458 367 LKVNLGFWRVQEG 379 (389)
Q Consensus 367 i~i~~~~W~~~~~ 379 (389)
|.+ +|+.+.
T Consensus 470 v~v----~d~~~~ 478 (567)
T 1qks_A 470 VAV----FDIKAM 478 (567)
T ss_dssp EEE----EEGGGC
T ss_pred EEE----EECCcc
Confidence 999 998876
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=1e-16 Score=136.20 Aligned_cols=246 Identities=9% Similarity=0.030 Sum_probs=170.6
Q ss_pred eeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC----CcE
Q 016458 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD----SVC 133 (389)
Q Consensus 58 ~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i 133 (389)
.....+.++...+.+++|++++++++++..++.|.+||..+++.......+...+.+++++++++++++...+ +.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 4455677777788999999999988888889999999998887665554556779999999999988877666 689
Q ss_pred EEEeCCCCCCCCCCCcceeee--cccccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 134 SIFNLNSPTDKDGNLPVSRML--SGHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
.+||..+.. ....+ ..+...+.++.++|++ .++++... .+.|..+|..+++..... ..
T Consensus 115 ~~~d~~~~~-------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~ 180 (333)
T 2dg1_A 115 FAATENGDN-------LQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII------QN 180 (333)
T ss_dssp EEECTTSCS-------CEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE------EE
T ss_pred EEEeCCCCE-------EEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEee------cC
Confidence 999987643 11111 1234578899999987 55555443 366777777655443332 12
Q ss_pred CCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcceeEE-----eeec--cceEEEEEecCCCEEEEEecCCeEEEE
Q 016458 206 TADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTF-----HGHE--GDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~ 277 (389)
...+..++++| +++ ++++.+.++.|.+||.......+..+ .... ..+..++++++|+++++...++.|.+|
T Consensus 181 ~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 23578899999 665 55555667899999986432222211 1111 357889999999988887788999999
Q ss_pred ECCCCceeeEeeccCC-CCCCCCeeEEEeCCCCCEEEEEecCC
Q 016458 278 DIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNG 319 (389)
Q Consensus 278 d~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (389)
|. .++.+..+..... ..+...+.+++|+|+++.|++++.++
T Consensus 260 d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 260 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 98 4665555543211 01111378999999988887766654
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.83 E-value=2.7e-17 Score=139.02 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=187.0
Q ss_pred cCCcEEEEeCCCCCeeEEEee------CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccc
Q 016458 87 QDGRLIVWNALTSQKTHAIKL------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (389)
Q Consensus 87 ~dg~v~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
.+++|.++|..+++....+.. .......+++. +++.+++...++.|.+||..+.+ ....+. ....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCC
Confidence 378999999998876554311 11335677774 45566666678999999998755 444443 3456
Q ss_pred eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC
Q 016458 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA 239 (389)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 239 (389)
...+++++++ .++++...++.|.+||..+++....+..............+++ . ++.++++.. .++.|.++|..+.
T Consensus 86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence 7889999987 5555554899999999999988776632110111124556666 2 566666554 4889999999877
Q ss_pred CcceeEEeeeccceEEEEEecCCCEEEEEecC----------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
+....+.. ......++++|+|++++++..+ +.|.++|..+++....+..... .....++|+|++
T Consensus 163 -~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~ 236 (328)
T 3dsm_A 163 -KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTR 236 (328)
T ss_dssp -EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTS
T ss_pred -eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCC
Confidence 55555543 3345789999999877777655 7899999998887766543221 137899999999
Q ss_pred CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEee----eCCCeeEEeecceecccCccc
Q 016458 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTG----SWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+.|+++.. .|.+||..+++..... .. ........+++++| ++.++++. ..++.|.+ |+.. |++.
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~-~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v----~d~~-g~~~ 305 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRP-FL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR----YSPQ-GKLI 305 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSC-SB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE----ECTT-CCEE
T ss_pred CEEEEEcc--EEEEEECCCCceeeee-ee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE----ECCC-CCEE
Confidence 99988765 8999999887753211 00 22246789999999 55555555 57899999 9998 7654
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.83 E-value=1.7e-17 Score=155.23 Aligned_cols=246 Identities=10% Similarity=0.008 Sum_probs=170.3
Q ss_pred CcEEEEEECCCCcEEEEecCCC-----cEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe--
Q 016458 110 AWVMTCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-- 182 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 182 (389)
..+..++|||||++|+.+..++ .|++||+.++. ...... ....+..++|+|++ +.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~-~~~~~~~~~wspDg-~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDG-KGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccc-cCcccceEEEEeCC-CEEEEEEECCccc
Confidence 3578899999999998765533 89999998754 222111 12236679999998 56666666554
Q ss_pred --------------EEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----CCceEEEeCCC---
Q 016458 183 --------------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV--- 238 (389)
Q Consensus 183 --------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~--- 238 (389)
|++|++.++.. ...+.. ..+...+..+.|+| ++++|+.++. +..|++||+..
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccc
Confidence 99999988763 222211 23455678999999 6777666554 56899999986
Q ss_pred ---CCcceeEEeeeccceEEEEEecCCCEEEEEecC----CeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 239 ---ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 239 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
+......+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ...+..+.. ...+..++|++++
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---KDVLEWVACVRSN 347 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCEEEEEEEETTT
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---CCeEEEEEEEcCC
Confidence 32246666666666554 588999988776653 3699999987642 233332211 1237788998788
Q ss_pred CEEEEEecCCc--EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee----eCCCeeEEeecceecccCc
Q 016458 310 RLLFAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG----SWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 310 ~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~~~~W~~~~~~ 380 (389)
.++++...++. |.+||+.+++....+ ..+.+.+..++++|++..++.. ...+.+.. ||+.+|+
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~----~d~~tg~ 416 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH----CDLTKEE 416 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE----EETTSSS
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE----EECCCCc
Confidence 88888888884 666777677776777 4567789999999998766633 23478888 9999887
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=2.5e-18 Score=160.00 Aligned_cols=256 Identities=13% Similarity=0.076 Sum_probs=161.8
Q ss_pred eeecccccCcEE---------EEEEc--CCCCe-EEEEec-CCcEEEEeCC--CCCeeEEEee-----CCCcEEEEEECC
Q 016458 60 CRTLQGHAGKVY---------SLDWT--SERNR-IVSASQ-DGRLIVWNAL--TSQKTHAIKL-----PCAWVMTCAFSP 119 (389)
Q Consensus 60 ~~~l~~h~~~v~---------~~~~~--~~~~~-l~~~~~-dg~v~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~ 119 (389)
.+.+..|...+. ...|+ |||+. |+.++. +..|.++++. .......+.. +...+..++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 456666766666 66665 99998 776554 5567777765 2033444444 556788999999
Q ss_pred CCcEEEEecCC----------CcEEEEeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeCC--------
Q 016458 120 TGQSVACGGLD----------SVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGD-------- 180 (389)
Q Consensus 120 ~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-------- 180 (389)
+|+.|++++.+ ..|++|++.+.... .......+. .+...+..+.|+|+| +.|+.++.+
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--CGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTC
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--cCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCC
Confidence 99999988876 58999998762000 000122333 455677889999998 566655543
Q ss_pred CeEEEEeCC-CC---eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEeeeccc--
Q 016458 181 QTCVLWDIT-TG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGD-- 252 (389)
Q Consensus 181 g~i~iwd~~-~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-- 252 (389)
..|.+||+. ++ ...... ..+...+..+.|+| ++++++++..++ .|.+||...+ . ...+..+...
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-eeeccccccccc
Confidence 479999999 56 333333 34567899999999 666888888888 5555665443 2 2222222221
Q ss_pred -------eEEEEEecCCCEEEEEecCCeEEEE--ECCCCceeeEeeccCCCCCCCCeeEE-EeCCCCCEEEEEecCC--c
Q 016458 253 -------VNTVKFFPDGNRFGTGSDDGTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNG--D 320 (389)
Q Consensus 253 -------i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg--~ 320 (389)
+..++|+|+++++++++. +.+++| |+.++. ...+.... ..+..+ +++++.-++++++.+. .
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPW-----TEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSC-----CEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCC-----CeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 467899999999999988 999999 555444 44443322 235555 4433322333444443 4
Q ss_pred EEEEEcccceEEE
Q 016458 321 CYVWDTLLAKVVL 333 (389)
Q Consensus 321 i~i~d~~~~~~~~ 333 (389)
|.++|+.+++...
T Consensus 362 i~~~d~~~g~~~~ 374 (662)
T 3azo_A 362 VVELDTVTGRART 374 (662)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECCCCceEE
Confidence 6666776776543
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.81 E-value=4.1e-17 Score=134.22 Aligned_cols=242 Identities=9% Similarity=0.002 Sum_probs=169.1
Q ss_pred cEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 111 WVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
...++++++++++++ +...++.|.+|+..... .......+...+.++++.+++ .++++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCC
Confidence 678999999999777 54678899999876532 111112233467789999987 4555544 8899999987
Q ss_pred CCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe
Q 016458 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 269 (389)
........ ......+..+++.+ +++++++...++.|.+|+.... ............+.+++++++++++++..
T Consensus 96 ~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 96 SNNQTVLP-----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp CSCCEECC-----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred CceEeeee-----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 65443221 22335688999998 7777777777889999976544 22111122234578899999999777777
Q ss_pred cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458 270 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 270 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
.++.|.+||............ ....+..++++++|.++++...++.|.+||.......... ..+...+.++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~----~~~~~~p~~i 239 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFT-----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FTGLNTPLAV 239 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCS-----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC----CCSCSCEEEE
T ss_pred CCCEEEEEecCCCceEeeccc-----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec----cCCCCCceeE
Confidence 788999999876654332211 1134789999999977777777889999998765443322 2344678999
Q ss_pred EECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 350 GLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 350 ~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
+++++|+++++...++.|++ +++...+.
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~----~~~~~~~~ 267 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVK----LTSLEHHH 267 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEE----ECCCGGGS
T ss_pred EECCCCCEEEEECCCCEEEE----EcCCCccc
Confidence 99999998888889999999 99887654
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.81 E-value=1.6e-16 Score=132.55 Aligned_cols=243 Identities=12% Similarity=0.124 Sum_probs=172.2
Q ss_pred eecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445666788999999998 7888888999999998877 56666777789999999999988887777899999986
Q ss_pred CCCCCCCCCcceeeec---c-cccceEEEEEeeCCCcEEEE----ee-------------CCCeEEEEeCCCCeeEEEec
Q 016458 140 SPTDKDGNLPVSRMLS---G-HKGYVSCCQYVPDEDTHLIT----SS-------------GDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~ 198 (389)
++. ...... . ....+.++++.|+| +++++ |+ ..+.|..++.. +.... +
T Consensus 99 ~g~-------~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~- 167 (296)
T 3e5z_A 99 GGE-------WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-P- 167 (296)
T ss_dssp TCC-------EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-E-
T ss_pred CCc-------EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-e-
Confidence 543 111111 1 12346779999988 56665 33 13567777765 44333 2
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---eeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
..+......++|+| +++.+++.+.++.|.+||+...... ...+..+...+.+++++++|+++++. ++.|.
T Consensus 168 ----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 24455678999999 6666677777899999998732232 22233344567789999999866665 78999
Q ss_pred EEECCCCceeeEeeccCCCCCCCCeeEEEe-CCCCCEEEEEecCCcEEEEEcccceE
Q 016458 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 276 i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
+||.. ++.+..+.... . +++++| +|+++.|++++.+ .+.-++..+.+.
T Consensus 241 ~~~~~-g~~~~~~~~~~-----~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQ-----T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EECTT-SCEEEEEECSS-----C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EECCC-CCEEEEEECCC-----C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 99986 66666554322 1 688899 6899999988876 465666655443
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=3.2e-17 Score=153.42 Aligned_cols=248 Identities=9% Similarity=0.046 Sum_probs=168.1
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc--------
Q 016458 66 HAGKVYSLDWTSERNRIVSASQDG-----RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------- 132 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 132 (389)
|...+..++|||||++||.++.++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998776543 8999999998876543222 23667999999999999887765
Q ss_pred --------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----CCeEEEEeCCC------Ce-
Q 016458 133 --------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITT------GL- 192 (389)
Q Consensus 133 --------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~- 192 (389)
|++|++.++... .........|...+..+.|+|++. +|+.++. +..|.+||+.+ +.
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 999999764311 011112233455678899999985 5554443 57899999976 42
Q ss_pred eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-C---CceEEEeCCCCCc-ceeEEeeecc--ceEEEEEecCCCEE
Q 016458 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D---STARLWDTRVASR-AVRTFHGHEG--DVNTVKFFPDGNRF 265 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l 265 (389)
....+ ..+...+.. .|+| ++..|+..+. + +.|.+||+.++.. ....+..|.. .+..++|++++.++
T Consensus 278 ~~~~l-----~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 278 KWVKL-----IDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CCEEE-----ECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred ceEEe-----eCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 23333 233444444 4777 4444444443 3 3699999986532 2355555544 68889999877888
Q ss_pred EEEecCCe--EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccce
Q 016458 266 GTGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAK 330 (389)
Q Consensus 266 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~ 330 (389)
++...|+. |.+||+.+++....+... ...+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88888884 666787677765555433 22478899999998666442 34689999998766
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=2e-16 Score=129.74 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=186.3
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG 156 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 156 (389)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|+++++ .++.|..||. +++ ....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~-------~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGR-------ELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSC-------EEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCC-------EEEEEcC
Confidence 45789999999999999999999999998776 46889999999998883 4678999998 433 3444444
Q ss_pred c-ccceEEEEEeeCCCcEEEEeeC-CCeEEEEeCCCCeeEEEecCccc-CCCCCCeeEEEeeCCCCcEEEEeeCCCceEE
Q 016458 157 H-KGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (389)
Q Consensus 157 ~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 233 (389)
+ ...+.++.+.+++ +++++.+. ++.|..+|. +++.+..+..... ..+......+...+ +++++++...++.|..
T Consensus 74 ~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 74 PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE 150 (276)
T ss_dssp CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence 3 3467888999998 67777776 888888886 6666666532110 11222345566777 8889999999999999
Q ss_pred EeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-CCCCCeeEEEeCCCCCEE
Q 016458 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 234 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l 312 (389)
||.. + +.+..+... ..+.++...++++++++++.++.|..+|..+++.+..+...... .....+..++..++|+.+
T Consensus 151 ~d~~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 151 IAPN-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp ECTT-S-CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred ECCC-C-CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 9987 5 666666643 45667888899999999998899999999999998888643211 122347888899999988
Q ss_pred EEEecC--------CcEEEEEc-ccceEEEeecCcCCCCCCCeeEEE
Q 016458 313 FAGYSN--------GDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 313 ~~~~~d--------g~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~ 350 (389)
++.... +..+++.+ .+++.+.++.. ...-+.+..++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~--~~~~~~~~~~~ 272 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND--KVKFGMISTIC 272 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC--TTTSCCCCEEE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecC--cccccceeeee
Confidence 877421 23456666 57888888754 23345566654
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.80 E-value=2.4e-17 Score=135.61 Aligned_cols=241 Identities=10% Similarity=-0.007 Sum_probs=166.6
Q ss_pred cEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
...++++++++++++ +.+.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+|+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence 688999999998777 546788999999765543322222334678899999999666665 8899999987632
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
...........+..+++.+++ .++++...++.|.+|+..+....... ......+..+++++ +++++++...
T Consensus 99 --~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~ 169 (270)
T 1rwi_B 99 --QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP-----FTGLNDPDGVAVDN-SGNVYVTDTD 169 (270)
T ss_dssp --CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC-----CCSCCSCCCEEECT-TCCEEEEEGG
T ss_pred --EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec-----cccCCCceeEEEeC-CCCEEEEECC
Confidence 111111223567899999987 56777677889999986655433222 22334678899998 6777777777
Q ss_pred CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 228 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
++.|.+||.... ........+...+.+++++++|.++++...++.|.+||........ ... .....+.++++++
T Consensus 170 ~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 170 NNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----TGLNTPLAVAVDS 243 (270)
T ss_dssp GTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----CSCSCEEEEEECT
T ss_pred CCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----CCCCCceeEEECC
Confidence 889999998755 2222112233568899999999877777778999999987644322 111 1123478999999
Q ss_pred CCCEEEEEecCCcEEEEEcccce
Q 016458 308 SGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
+|+++++...++.|+++++...+
T Consensus 244 ~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCEEEEEcCCCcc
Confidence 99988888889999999987654
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.80 E-value=1.2e-15 Score=130.61 Aligned_cols=278 Identities=11% Similarity=0.009 Sum_probs=187.3
Q ss_pred EcCCCCeEEEEec--CC---cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCC
Q 016458 75 WTSERNRIVSASQ--DG---RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN 139 (389)
Q Consensus 75 ~~~~~~~l~~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~ 139 (389)
..|++++++++.. .+ +|.++|..+++.+..+.....+ .++++|++++++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3466766666553 22 7899999999988877765554 999999999999885 36789999997
Q ss_pred CCCCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEE-ecCcccCCCCCCe
Q 016458 140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADV 209 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v 209 (389)
+.+ ....+... ......+.++|++ ++|+.+. . ++.|.++| .+++.... +. . ..
T Consensus 106 t~~-------~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-----~-~~-- 168 (373)
T 2mad_H 106 TFL-------PIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-----S-PT-- 168 (373)
T ss_pred CCc-------EEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcC-----C-Cc--
Confidence 643 22222110 1234578999998 4566555 3 58899999 99988777 52 1 11
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-----eeccc-eEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
++.+.|.....+++.+.||.+.++|. ++ +...... ....+ .....+.+++..++..+.++.+.+.|+....
T Consensus 169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred -eEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 24455545667778888999999999 55 3332211 11112 1234566766655555578899999987553
Q ss_pred e--eeEeeccCC-----CCCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458 284 Q--LQVYYQQHG-----ENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (389)
Q Consensus 284 ~--~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (389)
. ...+..... .........+.++|+++.++++.. ++.|.++|+.+++.+..+. .....
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p 320 (373)
T 2mad_H 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDV 320 (373)
T ss_pred ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----CCCCc
Confidence 2 122211000 000112345789999998888654 3579999999999988883 22357
Q ss_pred eEEEECCCCC-eEEeee-CCCeeEEeecceecccCcccC
Q 016458 347 TCLGLSADGS-ALCTGS-WDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 347 ~~~~~~~~~~-~l~~~~-~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.+++|+|||+ +++++. .++.|.+ +|+.+++...
T Consensus 321 ~~i~~s~Dg~~~l~v~~~~~~~V~V----iD~~t~~vv~ 355 (373)
T 2mad_H 321 DAISVAQDGGPDLYALSAGTEVLHI----YDAGAGDQDQ 355 (373)
T ss_pred CeEEECCCCCeEEEEEcCCCCeEEE----EECCCCCEEe
Confidence 8999999999 788777 4899999 9999988654
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.80 E-value=2.8e-15 Score=125.21 Aligned_cols=277 Identities=7% Similarity=-0.012 Sum_probs=189.9
Q ss_pred cccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--eCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC
Q 016458 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 140 (389)
+......+.+++++++|++.++...++.|.+||.. ++... +. .....+..+++.+++.++++...++.|..||..
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 33455678999999999888877778999999987 55433 32 223568999999999988877778889999876
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
+. . ...........+.++++.+++ .++++...++.|..+|.. +....... ......+..+++.+ +++
T Consensus 92 g~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~d~-~g~ 158 (300)
T 2qc5_A 92 GG-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDL----PNKGSYPAFITLGS-DNA 158 (300)
T ss_dssp SC-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECT-TSS
T ss_pred CC-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccC----CCCCCCceeEEECC-CCC
Confidence 32 1 111222234568899999887 566666668899999987 54443211 22345688999998 677
Q ss_pred EEEEeeCCCceEEEeCCCCCcceeEEe--eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC
Q 016458 221 MFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 298 (389)
++++...++.|..+|.. . ... .+. .+...+..+++++++.+.++....+.|.+||. ++..... ... ....
T Consensus 159 l~v~~~~~~~i~~~~~~-g-~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~---~~~~ 230 (300)
T 2qc5_A 159 LWFTENQNNSIGRITNT-G-KLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP---TPNA 230 (300)
T ss_dssp EEEEETTTTEEEEECTT-C-CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS---STTC
T ss_pred EEEEecCCCeEEEECCC-C-cEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC---CCCC
Confidence 77766667889999983 3 222 222 23346889999999987777767788999998 4443332 111 1123
Q ss_pred CeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+.+++++++|++.++...++.|..||. ++... .+.. ......+.+++++++|.+.++.. . .|..
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 4789999999986666656789999998 44433 2211 23345688999999998666655 4 5544
No 192
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1.1e-18 Score=151.92 Aligned_cols=261 Identities=11% Similarity=-0.003 Sum_probs=168.6
Q ss_pred EEEeCCCCCeeEEEeeCCCc-----EEEEEECCCCcEEEEecCC---CcEEEEeCCCCCCCCCCCcceeeecccccceEE
Q 016458 92 IVWNALTSQKTHAIKLPCAW-----VMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC 163 (389)
Q Consensus 92 ~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (389)
...|..++..+..+..+... +..++|+|+|++|+..... ..|.+|++.++. .......+......
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------~~~l~~~~~~~~~~ 85 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------AVQLTEGKGDNTFG 85 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------EEECCCSSCBCTTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------EEEeecCCCCcccc
Confidence 34477777777666554333 6678999999998776543 368888887643 22222222222333
Q ss_pred EEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeE-------------------EEeeCCCCcEEEE
Q 016458 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS-------------------VSISGSNSRMFVS 224 (389)
Q Consensus 164 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~ 224 (389)
+.|+|++ +.|+.++.++.|++||+.+++...... .+...... +.++| +++.++.
T Consensus 86 ~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~ 158 (396)
T 3c5m_A 86 GFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYT-----VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKF 158 (396)
T ss_dssp CEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHH
T ss_pred ceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEe-----cccccCCCCCEEEeccCCccccccccccccCC-CCcceee
Confidence 7899998 678888888899999999887665542 22221111 23455 4444433
Q ss_pred e-----eCCCceEEEeCCCCCcceeEEeeeccceEEEEEec-CCCEEEEEecC------CeEEEEECCCCceeeEeeccC
Q 016458 225 G-----SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 225 ~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~ 292 (389)
. ..+..|++||+.++ +. ..+..+...+..+.|+| ++..|+..+.+ ..|.+||+..+.... +....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g-~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~ 235 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETG-EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHA 235 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTC-CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCC
T ss_pred eeeccCCCcceEEEEECCCC-cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccC
Confidence 2 35668999999865 33 33445677899999999 78877766543 368899987654322 22211
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECC-CCCeEEeee----
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGS---- 362 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---- 362 (389)
....+..++|+|+|++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++
T Consensus 236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~--~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 236 ---EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV----MP--PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp ---TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE----CC--SEE-EEEECSSSSEEEEEECCC-
T ss_pred ---CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee----CC--CCC-CCccCCCCceEEEecCCcc
Confidence 01137789999999987766543 349999998876543321 11 123 88999 999888755
Q ss_pred ------------CCCeeEEeecceecccCcccC
Q 016458 363 ------------WDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 363 ------------~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.++.|.+ |++.++++..
T Consensus 306 ~~~~~~~~~~~~~~~~i~~----~d~~~~~~~~ 334 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYV----LNTKAKSAQK 334 (396)
T ss_dssp ---------CCCCCCEEEE----EETTTTBCCE
T ss_pred eeeccccccccCCCCcEEE----EecccCceEE
Confidence 3467888 9998886543
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.80 E-value=1.8e-16 Score=133.75 Aligned_cols=279 Identities=16% Similarity=0.179 Sum_probs=192.2
Q ss_pred cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCC-------CcE
Q 016458 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWV 112 (389)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v 112 (389)
...++...+.+.++..-..+ .++++|||+++++++ .++.|.+||..+++.+..+.... ...
T Consensus 62 ~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 62 FVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp EEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence 34566667777777765555 499999999888775 36789999999999998887543 245
Q ss_pred EEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 113 MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 113 ~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
..++|+|+|++++++.. ++.|.++|+.+.+ ....+... + |....|.+...+++.+.||.+.+.++.+
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCC
Confidence 67999999999988864 6899999998855 44444321 1 1223455556788889999999999986
Q ss_pred -CeeEEEecCcccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEe----------eeccceEEEE
Q 016458 191 -GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH----------GHEGDVNTVK 257 (389)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~----------~~~~~i~~~~ 257 (389)
++...... ........++. ...|.+.++++++ .+.+|.|++.|...... ....+. ........++
T Consensus 209 ~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 209 EGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp SSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred CCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 55433221 11111112222 2456543665555 45589999999975421 222221 0123345578
Q ss_pred EecCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEE
Q 016458 258 FFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD 325 (389)
Q Consensus 258 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d 325 (389)
++|+++.+++... .+.|.++|+.+++.+..+.... .+..+++++|++ +|+++. .++.|.++|
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 8999998888753 2579999999999998887654 278999999997 777754 488999999
Q ss_pred cccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 326 TLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
..+++.+.++.. . +....|.+++|
T Consensus 361 ~~t~k~~~~i~~--~---~~p~~l~~s~d 384 (386)
T 3sjl_D 361 AESGEELRSVNQ--L---GHGPQVITTAD 384 (386)
T ss_dssp TTTCCEEEEECC--C---CSSCCEEEECC
T ss_pred CCCCcEEEEecC--C---CCCceeEECCc
Confidence 999999999853 2 33345666665
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.79 E-value=5.1e-15 Score=126.71 Aligned_cols=264 Identities=11% Similarity=0.044 Sum_probs=182.7
Q ss_pred cccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC-------CCcE
Q 016458 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CAWV 112 (389)
Q Consensus 50 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v 112 (389)
..+++...+...++..-..+ .++++|||++|+++. .++.|.+||..+.+.+..+... ....
T Consensus 50 ~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 50 WVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 45666677777777655555 999999999998886 3678999999998888877654 1235
Q ss_pred EEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 113 MTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 113 ~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
..++|+|+|++|+++.. ++.|.++| .+++ .... +.. . .++.+.|+++..+++.+.||.+.++|.
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 68999999999998874 57899999 7754 3333 221 1 135566777677888889999999999
Q ss_pred CCeeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccceEEEE
Q 016458 190 TGLRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDVNTVK 257 (389)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~ 257 (389)
+++...............+ .....+.+.++.++++. .++.+.+.|+..... .+..+.. .......+.
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 7766643310000011112 12344555444444444 678999999865421 1122211 112244578
Q ss_pred EecCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEE
Q 016458 258 FFPDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWD 325 (389)
Q Consensus 258 ~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d 325 (389)
++|+++.++++.. ++.|.++|+.+++.+..+.... ....++|+|||+ .++++. .++.|.++|
T Consensus 274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 9999998887653 3579999999999888885543 268999999999 777777 489999999
Q ss_pred cccceEEEee
Q 016458 326 TLLAKVVLNL 335 (389)
Q Consensus 326 ~~~~~~~~~~ 335 (389)
+.+++.+..+
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999998874
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.78 E-value=1.9e-16 Score=147.83 Aligned_cols=281 Identities=12% Similarity=0.047 Sum_probs=177.5
Q ss_pred CCCCeEEEEecCC---cEEEE--eCCCCCeeEEEe------eCCCcEEEEEECCCCcEEEE-----ecCCCcEEEEeCCC
Q 016458 77 SERNRIVSASQDG---RLIVW--NALTSQKTHAIK------LPCAWVMTCAFSPTGQSVAC-----GGLDSVCSIFNLNS 140 (389)
Q Consensus 77 ~~~~~l~~~~~dg---~v~iw--~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~vw~~~~ 140 (389)
|+|++++....++ .-.+| +...++....+. .|...+..++|||||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5666665554432 23334 443444333222 23346889999999999983 44457899999998
Q ss_pred CCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCe-------------EEEEeCCCCee--EEEecCcccCCC
Q 016458 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-------------CVLWDITTGLR--TSVFGGEFQSGH 205 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~ 205 (389)
+.... ...+... ....++|+|++ +.|+.++.+.. |++|++.++.. ...+.. ..+
T Consensus 157 g~~~~-----~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~ 225 (695)
T 2bkl_A 157 GEWSK-----VDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---TGD 225 (695)
T ss_dssp CCBCS-----SCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC---CCC
T ss_pred CCCcC-----CcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec---CCC
Confidence 65210 0011111 12578999998 56777777665 99999998762 222211 344
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCC----ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe---cCCeEEEEE
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFD 278 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d 278 (389)
...+..+.|+| ++++|+.++.++ .|+++|.... ....+..+...+....+ +++.+++... .++.|.+||
T Consensus 226 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence 56788999999 666666666555 6777765433 45556666666666666 5666444433 258899999
Q ss_pred CCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 279 IRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 279 ~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
+.++.. ...+.... ....+..++|+ ++.++++...|+..++|.+. .++....+. ....+.+..++++|++
T Consensus 302 ~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 302 PAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ---LPGVGAASNLMGLEDL 374 (695)
T ss_dssp TTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC---CSSSSEECCCBSCTTC
T ss_pred CCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec---CCCCeEEEEeecCCCC
Confidence 987653 22332221 11237778887 67788888899988887655 355555552 2236678889999999
Q ss_pred CeEE----eeeCCCeeEEeecceecccCcccC
Q 016458 356 SALC----TGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 356 ~~l~----~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
..++ +....+.|++ ||+.+|+...
T Consensus 375 ~~l~~~~ss~~~P~~v~~----~d~~~g~~~~ 402 (695)
T 2bkl_A 375 DDAYYVFTSFTTPRQIYK----TSVSTGKSEL 402 (695)
T ss_dssp SEEEEEEEETTEEEEEEE----EETTTCCEEE
T ss_pred CEEEEEEcCCCCCCEEEE----EECCCCcEEE
Confidence 8777 3334578998 9999887543
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=1.1e-15 Score=129.17 Aligned_cols=263 Identities=8% Similarity=-0.010 Sum_probs=179.1
Q ss_pred CCcccCCCcceeeeecc------cccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCC
Q 016458 48 APVSFGPTDLVCCRTLQ------GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG 121 (389)
Q Consensus 48 ~~~~~~~~~~~~~~~l~------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (389)
....+++...+....+. ........+++.. ++.+++...++.|.+||..+++.+..+.. ......+++++++
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g 95 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE 95 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC
Confidence 34456666655555442 1223467788753 44556666679999999999999888853 4568899999988
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-----cceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEE
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-----GYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTS 195 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 195 (389)
+.+++...++.|.+||..+.+ ....+.... .....+++ . ++.++++.. .++.|.++|+.+++...
T Consensus 96 ~lyv~~~~~~~v~~iD~~t~~-------~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 96 KAYVTQIWDYRIFIINPKTYE-------ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEEEBSCSEEEEEETTTTE-------EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred eEEEEECCCCeEEEEECCCCe-------EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 555554478999999998744 333332211 14456666 3 335555544 48999999999998887
Q ss_pred EecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----------CceEEEeCCCCCcceeEEeee-ccceEEEEEecCCCE
Q 016458 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNR 264 (389)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 264 (389)
.+.. ......+.++| ++++++++..+ +.|.++|..+. +....+... ......++|+|+++.
T Consensus 167 ~i~~------g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 167 ELTI------GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp EEEC------SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCE
T ss_pred EEEc------CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCE
Confidence 7632 23456788888 77777776654 78999999876 555454422 236789999999999
Q ss_pred EEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEE----ecCCcEEEEEcccceEEEee
Q 016458 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAG----YSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 265 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~i~d~~~~~~~~~~ 335 (389)
|+++.. .|.+||..+++......... .......++++|+ +.++++. ..++.|.+||.. ++.+..+
T Consensus 239 lyv~~~--~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp EEEESS--SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEEEcc--EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 988765 89999998876532111110 1234789999995 4455554 467899999997 8888777
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.77 E-value=8.6e-16 Score=129.64 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=191.1
Q ss_pred EcCCCCeEEEEec-----CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCC
Q 016458 75 WTSERNRIVSASQ-----DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLN 139 (389)
Q Consensus 75 ~~~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~ 139 (389)
..|+++.+++... ++.|.+.|..+++.+..+.....+ . ++++|+|++++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4578887777654 679999999999999999877776 4 99999999988775 36789999998
Q ss_pred CCCCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCeeEEEecCcccCCCCCCee
Q 016458 140 SPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 210 (389)
+.+ ....+.-. ......+.++|+|. +++.+. .++.|.++|+.+++.+..+.. . + .
T Consensus 118 t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v-----~-g-~- 181 (386)
T 3sjl_D 118 TLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDV-----P-D-C- 181 (386)
T ss_dssp TCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEEC-----C-S-E-
T ss_pred CCe-------EEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEEC-----C-C-c-
Confidence 754 33333211 12345689999984 555554 378999999999999988832 1 1 1
Q ss_pred EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec----cce-EEEEEe-cCCCEEEEEecCCeEEEEECCCCce
Q 016458 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDV-NTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ 284 (389)
Q Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~ 284 (389)
..+.|...+.+++.+.||.+.+.++....+.......+- .++ ....|. ++|++++ .+.+|.|++.|+.+...
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence 222344566777888899999999876324322111111 122 124564 5775544 55689999999976542
Q ss_pred --eeEeeccC-----CCCCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 285 --LQVYYQQH-----GENEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 285 --~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
...+.... ..-.......++++++++.+++... .+.|.++|+.+++.+..+. -...+.
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~ 334 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEID 334 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEEC
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----CCCCcc
Confidence 22221000 0000112345778999998888653 2479999999999999884 223788
Q ss_pred EEEECCCCC-eEEee-eCCCeeEEeecceecccCcccC
Q 016458 348 CLGLSADGS-ALCTG-SWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 348 ~~~~~~~~~-~l~~~-~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+|++++|++ +|+++ ..++.|.+ +|..++++..
T Consensus 335 ~lavs~D~~~~ly~tn~~~~~VsV----iD~~t~k~~~ 368 (386)
T 3sjl_D 335 SINVSQDEKPLLYALSTGDKTLYI----HDAESGEELR 368 (386)
T ss_dssp EEEECSSSSCEEEEEETTTTEEEE----EETTTCCEEE
T ss_pred eEEECCCCCeEEEEEcCCCCeEEE----EECCCCcEEE
Confidence 999999997 66664 45899999 9999998753
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=4.1e-17 Score=152.27 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=164.2
Q ss_pred cccCcEEEEEEcCCCCeEE-----EEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc-------
Q 016458 65 GHAGKVYSLDWTSERNRIV-----SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV------- 132 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~-----~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 132 (389)
+|...+.+++|||||++|| .|+.+..|++||+.+++.+............++|+|+|+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 4666799999999999998 3444568999999998865111111111267899999999999988765
Q ss_pred ------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEEEeCCCCeeEEEecCccc
Q 016458 133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~ 202 (389)
|++|++.++... .........+...+..+.|+|+| ++++.++.++ .|.+|+..++......
T Consensus 198 ~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~----- 268 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLLV----- 268 (695)
T ss_dssp GGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEEE-----
T ss_pred CCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEee-----
Confidence 999999875411 11222333455678899999998 4555555444 6777776655444333
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCc-ceeEEeee--ccceEEEEEecCCCEEEEEecCCeEEE
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASR-AVRTFHGH--EGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i 276 (389)
.+...+....+ + ++.+++.+. .++.|.+||+.++.. ....+..+ ...+..++|+ ++.++++...|+..++
T Consensus 269 -~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 269 -KGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp -ECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred -cCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 23344555555 4 344555544 257899999976521 12344433 4457888888 6778888889998888
Q ss_pred EECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceE
Q 016458 277 FDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV 331 (389)
Q Consensus 277 ~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~ 331 (389)
|.+. ++.....+... ....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 345 ~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLP----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCEEEECCCS----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCeeEEecCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7655 34444443221 122477788999998776443 246899999987764
No 199
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=2.4e-16 Score=134.67 Aligned_cols=223 Identities=9% Similarity=0.109 Sum_probs=148.9
Q ss_pred CcEEEEEEcCCCCeEEEEecC---C--cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC------------
Q 016458 68 GKVYSLDWTSERNRIVSASQD---G--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------------ 130 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~d---g--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 130 (389)
..+..++|+|||++|+.++.+ + .|.+|++.+++.......+ . +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458889999999999887754 3 3778888887765555444 3 9999999999998887632
Q ss_pred ---------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---------CeEEEE
Q 016458 131 ---------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---------QTCVLW 186 (389)
Q Consensus 131 ---------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iw 186 (389)
..|.+|++.++. ....+.. . .+..+.|+|++ +++++..+ ..|.++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~-------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE-------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE-------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCe-------EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEe
Confidence 568889987643 2123333 3 78889999987 66666543 245555
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccceEE-EE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNT-VK 257 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-~~ 257 (389)
| +++..... .+ ..+..+ +| +++.|+.++.+ ..|.+|| ++ ........+...+.. +.
T Consensus 206 d--~~~~~~l~------~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~ 270 (347)
T 2gop_A 206 E--DGKEEKMF------EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKI 270 (347)
T ss_dssp E--TTEEEEEE------EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEE
T ss_pred C--CCceEEec------cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccE
Confidence 5 55443332 22 344444 88 66666655543 3677888 32 333333345667776 89
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcE-EEEEcccce
Q 016458 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC-YVWDTLLAK 330 (389)
Q Consensus 258 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~ 330 (389)
|+ ++ ++++++.++.+++| +.+++.. .+... ...+.+++|+| .++++++.++.. .+|.+. ++
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~-----~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG-----RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-----SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-----CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 99 88 88999999999999 8755443 33222 22488999999 677777777654 777765 44
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=9.3e-16 Score=125.79 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=165.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccc-cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
.+++|++++.++.|.+||.++++ ....+..+. ..+.++.+.|+| ++++ +.++.|..||. +++.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE-------IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE-------EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe-------EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 46889999999999999997765 455555554 468889999998 5666 45788999999 788888874
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCCCCcceeEEee------eccceEEEEEecCCCEEEEEecC
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHG------HEGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d 271 (389)
. .....+.++.+.+ +++++++.+. ++.+..+|.. + +.+..+.. +......+++.++|+++++...+
T Consensus 73 ~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~ 145 (276)
T 3no2_A 73 A----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT 145 (276)
T ss_dssp C----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred C----CCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence 2 2234678888998 8888888776 7778777753 3 55555432 22345567889999999999999
Q ss_pred CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcC--CCCCCCeeEE
Q 016458 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCL 349 (389)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~ 349 (389)
+.|..||.. ++.+..+.... ...++.+.++|++++++..++.|..+|..+++.+.++.... ......+..+
T Consensus 146 ~~v~~~d~~-G~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 146 SEVREIAPN-GQLLNSVKLSG------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp TEEEEECTT-SCEEEEEECSS------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred CEEEEECCC-CCEEEEEECCC------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 999999988 88888876542 24567888999999999888899999999999999884210 1122347888
Q ss_pred EECCCCCeEEeee
Q 016458 350 GLSADGSALCTGS 362 (389)
Q Consensus 350 ~~~~~~~~l~~~~ 362 (389)
+..++|..+++..
T Consensus 219 ~~~~~G~i~v~~~ 231 (276)
T 3no2_A 219 FPLQNGGLYICNW 231 (276)
T ss_dssp EECTTSCEEEEEE
T ss_pred eEcCCCCEEEEec
Confidence 9999999888763
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=2.8e-14 Score=119.05 Aligned_cols=246 Identities=9% Similarity=0.018 Sum_probs=171.9
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 186 (389)
+...+.++++.++|+++++...++.|.+|+.. +. ... ....+...+.++++.+++ .++++...++.|..|
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRI 83 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEE
Confidence 34568999999999988877778899999987 32 111 112244678899999987 566666668899999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l 265 (389)
|.. +.. ..+.. ......+..+++.+ ++.++++...++.|..||. .+ .... ........+..+++++++.++
T Consensus 84 ~~~-g~~-~~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 84 TKK-GII-KEYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DG-KIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp CTT-SCE-EEEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred CCC-CcE-EEEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CC-CEEEecCCCCCCCCceEEEcCCCCEE
Confidence 986 332 22211 22445788999998 7778777777889999998 33 2221 122234568999999999888
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCC
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (389)
++...++.|..||. +++... +... .....+..++++++|++.++...++.|.+||. +++...... ..+...
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~-~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~ 226 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE-FKIP---TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI---PTPNAR 226 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCC
T ss_pred EEeCCCCEEEEEcC-CCcEEE-eeCC---CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC---CCCCCC
Confidence 87777889999998 555443 2111 11234789999999997776666789999998 665433211 335567
Q ss_pred eeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458 346 ITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 346 v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
+.+++++++|.++++...++.|.. |+. ++++..+
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~~i~~----~d~-~g~~~~~ 260 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGANKIGR----LTS-NNIIEEY 260 (299)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEE----EET-TTEEEEE
T ss_pred ceeEEECCCCCEEEeccCCceEEE----ECC-CCceEEE
Confidence 899999999987776667788988 887 4555443
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.74 E-value=1.3e-15 Score=143.19 Aligned_cols=280 Identities=12% Similarity=0.006 Sum_probs=174.7
Q ss_pred CCCCeEEEEecCCc---EEEEeC--C---CCCeeEEEe------eCCCcEEEEEECCCCcEEEEecCC-----CcEEEEe
Q 016458 77 SERNRIVSASQDGR---LIVWNA--L---TSQKTHAIK------LPCAWVMTCAFSPTGQSVACGGLD-----SVCSIFN 137 (389)
Q Consensus 77 ~~~~~l~~~~~dg~---v~iw~~--~---~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~ 137 (389)
|+|++++....++. -.+|.. . .++....+. .+...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 67777665554332 444543 3 333222211 122367889999999999877543 4699999
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--------------eEEEEeCCCCee--EEEecCcc
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--------------TCVLWDITTGLR--TSVFGGEF 201 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~--~~~~~~~~ 201 (389)
+.++. ... ...+...+..++|+|+ .. |+.++.++ .|++|++.++.. ...+..
T Consensus 196 l~tg~-------~~~-~~~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-- 263 (741)
T 1yr2_A 196 VADGK-------PLA-DELKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-- 263 (741)
T ss_dssp TTTCC-------EEE-EEEEEEESCCCEESTT-SE-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC--
T ss_pred CCCCC-------CCC-ccCCCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc--
Confidence 98855 111 1112222357899998 55 44444433 489999987652 222211
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeCCCCCcc-eeEEeeeccceEEEEEecCCCEEEEEec----C
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSD----D 271 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d 271 (389)
..+...+..+.|+| ++++|+..+.+ ..|++||+.++... ...+..+...+.... +|+++.|+..+. +
T Consensus 264 -~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 264 -PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp -TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred -CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence 22334588999999 77777666644 38999998765223 556665555555553 488998888775 3
Q ss_pred CeEEEEECCCCc-eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-cceEEEeecCcCCCCCCCeeEE
Q 016458 272 GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 272 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
+.|.+||+.++. ....+..... ..+..+.++ ++.++++...|+..+||.+. .+.....+. ..+.+.+..+
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~---~~~~~~v~~~ 412 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESK----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS---LPGIGSASGL 412 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCS----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB---CSSSCEEEEE
T ss_pred CEEEEEeCCCCccccEEEecCCC----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc---CCCCeEEEEe
Confidence 459999998752 3333332221 136677777 56677888888887777554 455555552 2246678999
Q ss_pred EECCCCCeEEe----eeCCCeeEEeecceecccCcccC
Q 016458 350 GLSADGSALCT----GSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 350 ~~~~~~~~l~~----~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+++|+++.|+. ....+.+.+ ||+.+|+...
T Consensus 413 ~~s~d~~~l~~~~ss~~~P~~i~~----~d~~tg~~~~ 446 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQPATVLA----LDPATAKTTP 446 (741)
T ss_dssp ECCBTCSCEEEEEEETTEEEEEEE----EETTTTEEEE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEE----EECCCCcEEE
Confidence 99999886663 334578888 9998887543
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.74 E-value=6.5e-15 Score=126.61 Aligned_cols=264 Identities=15% Similarity=0.136 Sum_probs=181.9
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeC-------CCcEE
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLP-------CAWVM 113 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~-------~~~v~ 113 (389)
.+++...+.+.++..-..+ .++++||+++|+++. .++.|.++|..+++.+..+... .....
T Consensus 103 VID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 103 VIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence 3455666666666655555 899999999888776 3678999999999999888754 22356
Q ss_pred EEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC
Q 016458 114 TCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (389)
Q Consensus 114 ~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 191 (389)
.++|+|+|++++++.. ++.|.+.|+.+.+ ....+.-.. +....|++...+++.+.||.+.+.+..++
T Consensus 181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp GSEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred eEEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 7899999999998864 5789999998754 333333211 13445655567788888999999898666
Q ss_pred eeEEEecCcccCCCCCC-eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc-eeEEe----------eeccceEEEEEe
Q 016458 192 LRTSVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH----------GHEGDVNTVKFF 259 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~----------~~~~~i~~~~~~ 259 (389)
+........+ .....+ ...+.+.+ ++..++..+..+.+.+.|....... ...+. ........++++
T Consensus 250 ~v~~~~~~~~-~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 250 ETKVTNTEVF-HTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp CCEEEECCCC-SCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred cEEEEeeeee-ccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 5553211000 111111 12345677 4444444566789999998643211 11111 011122347899
Q ss_pred cCCCEEEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC-EEEEEe-cCCcEEEEEcc
Q 016458 260 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL 327 (389)
Q Consensus 260 ~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d~~ 327 (389)
|+++.+++... ++.|.++|+.+.+.+..+..... ...++|+|||+ ++++.. .++.|.++|+.
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 99988777643 35799999999999988866442 68999999999 888888 58999999999
Q ss_pred cceEEEee
Q 016458 328 LAKVVLNL 335 (389)
Q Consensus 328 ~~~~~~~~ 335 (389)
+++.+.++
T Consensus 402 t~kvv~tI 409 (426)
T 3c75_H 402 TGEELRSV 409 (426)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEe
Confidence 99999886
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.74 E-value=2.2e-14 Score=120.59 Aligned_cols=248 Identities=9% Similarity=0.070 Sum_probs=165.7
Q ss_pred CCCcEEEEEECCCCcEEEE-------ecCCCcEEEEeCCCCCCCCCCCcceeee----cccccceEEEEEeeC-CCcEEE
Q 016458 108 PCAWVMTCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPD-EDTHLI 175 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~-~~~~l~ 175 (389)
.-....+++|++++.++++ +..++.|.+|+..++. ..... .++...+.++.+.++ + .++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~- 86 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-------KTVICKPEVNGYGGIPAGCQCDRDAN-QLF- 86 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-------EEEEECCEETTEECCEEEEEECSSSS-EEE-
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-------EEEEEecccCCCCCCCceEEEecCCC-cEE-
Confidence 3345789999999988877 5678899999976643 11111 124567889999998 5 444
Q ss_pred EeeCCCeEEEEeCCCCeeEEE-ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC---------------CceEEEeCCCC
Q 016458 176 TSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVA 239 (389)
Q Consensus 176 ~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~ 239 (389)
.++..+.|.+||.. ++.... ... ........+.++++++ +++++++...+ +.|..||.. .
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIAKKD-SEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECCSBC-TTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEECCCCEEEEeCC-CCEEEEEecc-CCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 44445579999988 655433 211 0011224588999998 67777766554 567777765 2
Q ss_pred CcceeEEeeeccceEEEEEe----cCCCEEEEE-ecCCeEEEEECC-CCceee--EeeccCCCCCC-CCeeEEEeCCCCC
Q 016458 240 SRAVRTFHGHEGDVNTVKFF----PDGNRFGTG-SDDGTCRLFDIR-TGHQLQ--VYYQQHGENEI-PHVTSIAFSISGR 310 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~ 310 (389)
.. ..+..+......++++ |+++.|+++ ..++.|.+||+. ++.... .+... .... ..+..++++++|+
T Consensus 163 -~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 163 -QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCC
T ss_pred -CE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCC
Confidence 32 3333344567889999 999766555 567899999986 343211 11111 1111 2478899999999
Q ss_pred EEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE-EeeeCCCeeEEeecceecccCc
Q 016458 311 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
++++...++.|.+||..+++....+ ..+...+.+++|+++++.| ++...++.|.. |++...-
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~----~~~~~~g 301 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWK----FEWQRNG 301 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEE----EECSSCB
T ss_pred EEEEEcCCCEEEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEE----EeCCCCC
Confidence 8888778889999998867666555 3455789999999999955 44555678888 8887543
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.73 E-value=2.4e-15 Score=129.30 Aligned_cols=278 Identities=11% Similarity=0.016 Sum_probs=190.2
Q ss_pred CCCCeEEEEec-C----CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCC
Q 016458 77 SERNRIVSASQ-D----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSP 141 (389)
Q Consensus 77 ~~~~~l~~~~~-d----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~ 141 (389)
++++.++++.. + +.|.++|..+++.+..+.....+ .++++|++++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 35555555443 2 69999999999999999987776 899999999998876 3678999999875
Q ss_pred CCCCCCCcceeeeccc-------ccceEEEEEeeCCCcEEEEee-C-CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE
Q 016458 142 TDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (389)
+ ....+.-. ......+.++|++ ++++.+. . ++.|.+.|+.+++.+..+.. .. . .
T Consensus 160 ~-------vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v-----~g--~--~ 222 (426)
T 3c75_H 160 L-------PIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-----PD--C--Y 222 (426)
T ss_dssp C-------EEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC-----CS--E--E
T ss_pred c-------EEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEc-----CC--c--e
Confidence 4 33333210 1234567899998 4566554 3 68999999999999888732 11 1 2
Q ss_pred EeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE----eeeccce-EEEEEecCCCEEEEEecCCeEEEEECCCCceee-
Q 016458 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF----HGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ- 286 (389)
Q Consensus 213 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 286 (389)
...|.....+++.+.||.+.+.+.... +..... .....++ ..+.|.+++..++..+..+.|.+.|+.......
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR 301 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe
Confidence 334434466777778888888888433 333211 1111111 235678888888877888999999987544221
Q ss_pred -Eeecc--CCC---CCCCCeeEEEeCCCCCEEEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458 287 -VYYQQ--HGE---NEIPHVTSIAFSISGRLLFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 287 -~~~~~--~~~---~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (389)
.+... ... ........++++|+++.+++... ++.|.++|+.+.+.+..+.. .....+++
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-----g~~P~gia 376 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-----GHEIDSIN 376 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----EEEECEEE
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-----CCCcCeEE
Confidence 11100 000 00011233789999998877653 34799999999999988841 23588999
Q ss_pred ECCCCC-eEEeee-CCCeeEEeecceecccCcccC
Q 016458 351 LSADGS-ALCTGS-WDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 351 ~~~~~~-~l~~~~-~dg~i~i~~~~W~~~~~~~~~ 383 (389)
|+|||+ +++++. .++.|.+ +|+.+++...
T Consensus 377 ~spDg~~~lyv~n~~s~~VsV----ID~~t~kvv~ 407 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHI----YDAATGEELR 407 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEE----EETTTCCEEE
T ss_pred EccCCCEEEEEEcCCCCeEEE----EECCCCCEEE
Confidence 999999 888888 5899999 9999998754
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.73 E-value=3.4e-14 Score=123.39 Aligned_cols=248 Identities=15% Similarity=0.040 Sum_probs=167.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cEEEEeCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLNSPTDKD 145 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~ 145 (389)
.....|+|+++++++++...++.|++||..++......... .... ++|+++++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 46889999999988888777899999999877665554443 3334 99999999998888766 788888765320
Q ss_pred CCCcceeee-cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe-e-EEEeeCCCCcEE
Q 016458 146 GNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV-L-SVSISGSNSRMF 222 (389)
Q Consensus 146 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~l 222 (389)
....... ......+.+++++|++.. |+.+..++.|+.||..++.......... ......- . .++++|.++.++
T Consensus 207 --~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~-~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 207 --PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLEL-SGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp --EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCC-CSCCCCSSCCEEEEETTTTEEE
T ss_pred --eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccc-cCCCCCCccccEEEeCCCCEEE
Confidence 0011111 214456788999995434 4446778999999998776433210000 1122222 3 999999667777
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeeec---------------cceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceee
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 286 (389)
++-..++.|+.|+.... ...+.++. .....++++|+|+++++-. .++.|+.|++.++....
T Consensus 283 v~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 77777889999987632 33333332 3478999999999878877 88999999987775433
Q ss_pred EeeccCC---------CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 287 VYYQQHG---------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 287 ~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
....... .........++++++|.++++-..++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2221000 011234789999999887777777888888765
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.73 E-value=9.3e-15 Score=122.91 Aligned_cols=240 Identities=11% Similarity=0.094 Sum_probs=162.0
Q ss_pred ccCcEEEEEEcCCCCeEEE-------EecCCcEEEEeCCCCCeeEEEe----eCCCcEEEEEECCC-CcEEEEecCCCcE
Q 016458 66 HAGKVYSLDWTSERNRIVS-------ASQDGRLIVWNALTSQKTHAIK----LPCAWVMTCAFSPT-GQSVACGGLDSVC 133 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~-------~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i 133 (389)
.-....+++|++++.++++ +..++.|.+||..+++...... .+...+..++++++ ++++++.. .+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445789999999988887 6778899999988877543221 13356899999999 76555554 4478
Q ss_pred EEEeCCCCCCCCCCCcceee-ec----ccccceEEEEEeeCCCcEEEEeeCC---------------CeEEEEeCCCCee
Q 016458 134 SIFNLNSPTDKDGNLPVSRM-LS----GHKGYVSCCQYVPDEDTHLITSSGD---------------QTCVLWDITTGLR 193 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~ 193 (389)
.+|+.. +. .... .. .....+.++++.+++ +++++...+ +.|..||.. ++.
T Consensus 95 ~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 95 LVVQTD-GT-------FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEETT-SC-------EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEEeCC-CC-------EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 889987 33 1111 11 122457899999987 566655544 578888876 444
Q ss_pred EEEecCcccCCCCCCeeEEEee----CCCCc-EEEEeeCCCceEEEeCCCCCc-----ceeEEeeec-cceEEEEEecCC
Q 016458 194 TSVFGGEFQSGHTADVLSVSIS----GSNSR-MFVSGSCDSTARLWDTRVASR-----AVRTFHGHE-GDVNTVKFFPDG 262 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~ 262 (389)
.... ........++++ | +++ ++++...++.|.+||...... ....+..+. ..+..++++++|
T Consensus 165 ~~~~------~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 165 IQVD------TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp EEEE------EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred EEec------cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence 3332 223346788999 8 554 445555678999999762112 112222232 557889999999
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE-ecCCcEEEEEccc
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLL 328 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 328 (389)
+++++...++.|.+||..+++....+.... ..+.+++|+|+|+.|+++ ..++.|..|++..
T Consensus 238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDGGQPKMRIRCPF-----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEETTTEEEEECTTCBSCSEEEECSS-----SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCEEEEEcCCCCcEeEEEeCCC-----CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 988888788999999988776665554322 248999999999966555 4567899999764
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.70 E-value=4.1e-15 Score=139.76 Aligned_cols=248 Identities=10% Similarity=0.045 Sum_probs=157.3
Q ss_pred ccCcEEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCc--------
Q 016458 66 HAGKVYSLDWTSERNRIVSASQD-----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-------- 132 (389)
Q Consensus 66 h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 132 (389)
|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 43468899999999999877654 3699999999987653 222222357899999 98888876554
Q ss_pred ------EEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCC--eeEEEecC
Q 016458 133 ------CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTG--LRTSVFGG 199 (389)
Q Consensus 133 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~ 199 (389)
|++|++.++... -........+...+..+.|+|+|. +++..+.+ ..|.+||+.++ .....+
T Consensus 239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-- 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTAL-- 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence 888998764311 011222223334588999999984 55555433 48999999877 312333
Q ss_pred cccCCCCCCeeEEEeeCCCCcEEEEeeC----CCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCEEEEEecCCeE
Q 016458 200 EFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 274 (389)
Q Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 274 (389)
..+...+.... +| +++.|+..+. ++.|.+||+..+. .....+..+...+..++++ ++.++++...|+..
T Consensus 313 ---~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp ---ECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred ---cCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 22333344443 46 5555655554 3459999987641 2333344444556677887 66678888889887
Q ss_pred EEEECC-CCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe----cCCcEEEEEcccceE
Q 016458 275 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV 331 (389)
Q Consensus 275 ~i~d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~ 331 (389)
++|.+. ++.....+... ....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 387 ~l~~~~~~g~~~~~l~~~----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLP----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEETTSCEEEECBCS----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEeCCCCceeeccCC----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 777554 34444443321 122478899999988665332 346899999988763
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.68 E-value=4.8e-13 Score=111.36 Aligned_cols=235 Identities=12% Similarity=0.100 Sum_probs=154.7
Q ss_pred CCCcEEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEE
Q 016458 108 PCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (389)
Q Consensus 108 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 186 (389)
...-..+..|+++ +.++++...++.|..|+..++. . ..+ .....+.++++++++ ++++ +. ++.|.+|
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~ 78 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSG-GYVA-TI-GTKFCAL 78 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTS-SEEE-EE-TTEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCC-CEEE-EE-CCeEEEE
Confidence 3345667889995 4566666778999999988643 1 112 234678999999998 4444 44 5689999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC---------CceEEEeCCCCCcceeEEeeeccceEEEE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEGDVNTVK 257 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 257 (389)
|..+++........ .......+..++++| +++++++.... ..-.+|.+..... ...+..+....+.++
T Consensus 79 d~~~g~~~~~~~~~-~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 79 NWKEQSAVVLATVD-NDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLD 155 (297)
T ss_dssp ETTTTEEEEEEECC-TTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEE
T ss_pred ECCCCcEEEEEecC-CCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceE
Confidence 99887654433211 011234578899998 77766654322 2234554443222 333344445678999
Q ss_pred EecCCCEEE-EEecCCeEEEEEC--CCCcee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 258 FFPDGNRFG-TGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 258 ~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
|+|+++.|+ +.+.++.|.+||+ .++... ..+... .........++++++|++.++...++.|..||..+++.+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 999998765 4556789999997 455432 112111 111124688999999988877777888999999989988
Q ss_pred EeecCcCCCCCCCeeEEEEC-CCCCeEEeeeC
Q 016458 333 LNLGSLQNSHEGRITCLGLS-ADGSALCTGSW 363 (389)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 363 (389)
..+ ..+...+++++|. |+++.|+.++.
T Consensus 234 ~~i----~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTV----KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEE----ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEE----ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 887 4555689999998 88877655543
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.67 E-value=7.6e-13 Score=110.33 Aligned_cols=244 Identities=9% Similarity=-0.006 Sum_probs=169.8
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
...+.++++.++++..++...++.|.+|+.. +. ... ........+..+++.+++ .++++...++.|..||
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLS 89 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEEC
Confidence 4568999999999988887778999999977 32 111 122334578899999887 5666666678999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCccee-EEeeeccceEEEEEecCCCEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFG 266 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 266 (389)
.. +.... +.. ......+..+++.+ +++++++...++.|..+|.. + .... .+......+..+++.+++++.+
T Consensus 90 ~~-g~~~~-~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 90 KK-GGFTE-YPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp TT-SCEEE-EEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-S-CEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred CC-CCeEE-ecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-C-CEEEccCCCCCCCceeEEECCCCCEEE
Confidence 88 54432 211 22346688999998 77777777668899999987 3 3222 1222345688999999999777
Q ss_pred EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCe
Q 016458 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (389)
Q Consensus 267 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 346 (389)
+...++.|..||. +++... +.. ......+..++++++|++.++....+.|.+||. +++...... ..+...+
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---~~~~~~~ 232 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI---PTPNARP 232 (300)
T ss_dssp EETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC---SSTTCCE
T ss_pred EecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC---CCCCCCc
Confidence 7666889999998 554433 222 112234789999999987777666778999998 444433211 3345678
Q ss_pred eEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 347 TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 347 ~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.+++++++|++.++...++.|.. ++. ++++..
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~----~~~-~g~~~~ 264 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGR----ITN-DNTIQE 264 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEE----ECT-TSCEEE
T ss_pred eEEEECCCCCEEEeccCCCeEEE----ECC-CCcEEE
Confidence 99999999987777666788988 887 455443
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=3.3e-14 Score=120.96 Aligned_cols=275 Identities=11% Similarity=0.007 Sum_probs=172.6
Q ss_pred ceeeeecccccCcEEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCCeeEEEe-------eCCCcEEEEEECCCCcEEEEe
Q 016458 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSAS--QDGRLIVWNALTSQKTHAIK-------LPCAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 57 ~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~ 127 (389)
++.+..+. ..+..++++++|+.+++.. .++.++||.+.+++ +..+. .+-..+..++++++++++++-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34444444 6799999999999888864 23435566554443 22221 133579999999998876654
Q ss_pred cC-----CCcEEEEeCCCCCCCCCCCcceeeec------ccccceEEEEEeeCCCcEEEEee---CCCeEEEEeCCCCee
Q 016458 128 GL-----DSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLR 193 (389)
Q Consensus 128 ~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~ 193 (389)
.. ++.|.+||+.+++ ....+. .+...+..+++.+++...+++.. .++.|.+||+.+++.
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~-------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQ-------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTE-------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CCCCcCCCCeEEEEECCCCe-------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 33 5789999998644 222222 12345688999986545556655 678999999998877
Q ss_pred EEEecCcccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCC
Q 016458 194 TSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 272 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 272 (389)
...+ ..|..... ...+.+ ++..+.+...+|.+..|. ..+..++|+|+++.|+++..++
T Consensus 158 ~r~~-----~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 158 ARVL-----QGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp EEEC-----TTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EEEe-----cCCCcccccccceeE-CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCC
Confidence 6655 22211100 022333 455566666677665442 1357899999999888887665
Q ss_pred -eEEEEECC---CCce-----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCC
Q 016458 273 -TCRLFDIR---TGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343 (389)
Q Consensus 273 -~i~i~d~~---~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 343 (389)
.+..++.. .+.. ...+... ........++++++|+++++...++.|.+||..+++...... ..+.
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---~~~~ 290 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---DEKL 290 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE---CGGG
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE---CCce
Confidence 55555432 1110 0000000 001125679999999998888889999999985565433331 1234
Q ss_pred CCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 344 GRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 344 ~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+++++|.+++.++++.+..+.+.+
T Consensus 291 ~~p~~va~~~~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFDCNQLHHSAP 316 (343)
T ss_dssp SCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred ecCCeeEECCCCcEEEEeCccccccc
Confidence 56899999999998888776655544
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.66 E-value=2.5e-14 Score=133.25 Aligned_cols=249 Identities=10% Similarity=0.064 Sum_probs=161.8
Q ss_pred cccCcEEEEEEcCCCCeEEEE-----ecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--------
Q 016458 65 GHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-------- 131 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~~~l~~~-----~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 131 (389)
+|...+..++|||||++||-+ +....|++||+.+++.+... .+......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 466679999999999988843 23357999999999865431 111112567899 999998887764
Q ss_pred -----cEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEEeeC---CCeEEEEeCCCCe-eEEEecCcc
Q 016458 132 -----VCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGL-RTSVFGGEF 201 (389)
Q Consensus 132 -----~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~ 201 (389)
.|++|++.++... -........ |......+.|+|++..++++.+. +..|+++|+.++. ....+
T Consensus 204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---- 276 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---- 276 (693)
T ss_dssp -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE----
T ss_pred cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE----
Confidence 3999998774411 011222233 44557789999998655555443 3589999998763 22333
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCC---CceEEEeCCCCCc-ceeEEeeeccceEEEEEecCCCEEEEEecCC---eE
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TC 274 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i 274 (389)
..+....... +++.++.+++.+..+ +.|..+|+..+.. ....+..|...+. .|+++++.|+....++ .|
T Consensus 277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 2333444444 555356666665544 5789999987532 2355666766665 8999998887776544 68
Q ss_pred EEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC----CcEEEEEcccceE
Q 016458 275 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV 331 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~ 331 (389)
++||+..+ ....+.... ...+..+.++++++.++....+ +.++.||+.+++.
T Consensus 353 ~~~d~~g~-~~~~l~~p~----~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG----LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECTTSC-EEEEECCSS----SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCCC-eeEEeecCC----CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 99998744 333332211 1236777888888876665544 7899999877654
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.66 E-value=3.2e-13 Score=112.39 Aligned_cols=233 Identities=13% Similarity=0.086 Sum_probs=153.1
Q ss_pred cccccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCC
Q 016458 63 LQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 63 l~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 141 (389)
+..+..-.-+..|++++ .++++...++.|..||..++.. ..+. ....+.+++++++++++++. ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC
Confidence 34444456689999954 4566666789999999987765 3333 34679999999999955553 567999998764
Q ss_pred CCCCCCCcceeeec--ccccceEEEEEeeCCCcEEEEeeC-----------CCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 142 TDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 142 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
. ........ .....+.++++.|+| +++++... .+.|..++.. +...... .....
T Consensus 84 ~-----~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~------~~~~~ 150 (297)
T 3g4e_A 84 S-----AVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF------DQVDI 150 (297)
T ss_dssp E-----EEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE------EEESB
T ss_pred c-----EEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-CCEEEEe------ecccc
Confidence 3 11111111 123457889999998 45544321 2345555543 3322222 22345
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCC--CCCcc-----eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTR--VASRA-----VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 281 (389)
...++|+|+...++++.+.++.|..||+. ++ .. +..+..+...+..++++++|++.++...++.|..||..+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 67899999444455666678899999874 32 21 112222345678999999998888877888999999998
Q ss_pred CceeeEeeccCCCCCCCCeeEEEeC-CCCCEEEEEecC
Q 016458 282 GHQLQVYYQQHGENEIPHVTSIAFS-ISGRLLFAGYSN 318 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d 318 (389)
++.+..+..... .+++++|. |+++.|++++..
T Consensus 230 G~~~~~i~~p~~-----~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 230 GKRLQTVKLPVD-----KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CCEEEEEECSSS-----BEEEEEEESGGGCEEEEEEBC
T ss_pred ceEEEEEECCCC-----CceEEEEeCCCCCEEEEEcCC
Confidence 888877765432 38999998 888877776543
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.65 E-value=2.7e-13 Score=113.36 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=158.8
Q ss_pred CeeEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee
Q 016458 100 QKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS 178 (389)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 178 (389)
..+..+...........|+|+++ ++++...++.|..|+... . ...+..+...+..+.+.+++ +++++..
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~--------~~~~~~~~~~~~gl~~d~dG-~l~v~~~ 104 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T--------VDVLLDATAFTNGNAVDAQQ-RLVHCEH 104 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C--------EEEEEESCSCEEEEEECTTS-CEEEEET
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C--------EEEEeCCCCccceeeECCCC-CEEEEEC
Confidence 34444555556678899999998 566777789999998743 1 23344456678899999987 5555555
Q ss_pred CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEE----eeC-------------CCceEEEeCCCCCc
Q 016458 179 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASR 241 (389)
Q Consensus 179 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~ 241 (389)
.++.|.+|+.. +...... ..........+..+++.+ +++++++ |.. .+.|..||..++ +
T Consensus 105 ~~~~v~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~ 180 (305)
T 3dr2_A 105 GRRAITRSDAD-GQAHLLV-GRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P 180 (305)
T ss_dssp TTTEEEEECTT-SCEEEEE-CEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C
T ss_pred CCCEEEEECCC-CCEEEEE-eccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c
Confidence 66889999986 5433222 111011123467899998 7788776 332 256777777544 3
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
.. .+. .......++|+|+++.|+++... +.|.+|++..+. +......... .......++++++|++. ++
T Consensus 181 ~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 181 LQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp CE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEE-EC
T ss_pred EE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEE-Ee
Confidence 22 223 44567889999999988877665 789999987654 2111110000 11224678999999944 44
Q ss_pred ecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+.+ .|.+|+. .++.+..+. .+. .+.+++|+++++.|..++.++..++
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred cCC-cEEEECC-CCCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 444 4999998 566666663 233 5889999999998888887765554
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.64 E-value=3.3e-14 Score=120.34 Aligned_cols=269 Identities=11% Similarity=0.026 Sum_probs=179.5
Q ss_pred ccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCeeEEEeeCC-------CcEE
Q 016458 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPC-------AWVM 113 (389)
Q Consensus 51 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~-------~~v~ 113 (389)
..++...+.+.++..-..+ .++++||+++++++. .++.|.+||..+++.+..+..+. ....
T Consensus 50 vID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred EEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc
Confidence 4567778888888766666 799999999988886 36899999999999999987651 2356
Q ss_pred EEEECCCCcEEEEecC--CCcEEE--EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC
Q 016458 114 TCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 189 (389)
Q Consensus 114 ~~~~~~~~~~l~~~~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 189 (389)
.++++|+|++++++.. +..+.+ +|..+ ...+.. .+. ....|++...+++.+.||.+.+.|+.
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD----------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE----------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh----------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 8999999999998865 456888 88754 111111 011 22346666677888889999999988
Q ss_pred C-----CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-ceeEEee----------eccce
Q 016458 190 T-----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG----------HEGDV 253 (389)
Q Consensus 190 ~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i 253 (389)
+ ++......... .....+. . .+..+ .++..+. +.+.+.|...... .+..+.. .....
T Consensus 194 ~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp SSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred cccccCCeEEEEeeeee-eCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 7 33221100000 1112222 3 55344 4444445 9999999864311 1111110 11122
Q ss_pred EEEEEecCCCEEEEEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE-EEEEe-cCCcEE
Q 016458 254 NTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDCY 322 (389)
Q Consensus 254 ~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~i~ 322 (389)
..++++|+++.++++.. ++.+.++|+.+.+.+..+..... ...++|+|||++ +++.. .++.|.
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECCCCCEEEEEccCCCCeEE
Confidence 23789999998887643 23566999999998887765442 689999999984 55555 489999
Q ss_pred EEEcccceEEEeecCcCCCCCCCeeEEEECC
Q 016458 323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
++|+.+++.+.++. .. .....+++.+
T Consensus 341 VID~~t~kvv~~I~----vg-~~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSSVE----LD-KGPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEECC----CC-SCCCEEECCC
T ss_pred EEECCCCcEEEEEE----CC-CCCCEEEeec
Confidence 99999999999883 22 3344566554
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.62 E-value=2.5e-12 Score=111.70 Aligned_cols=244 Identities=9% Similarity=0.100 Sum_probs=159.6
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEe
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWD 187 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd 187 (389)
.....++|+++++++++...++.|++||..++. ....... ..... ++|++++ ..++++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEE
Confidence 357899999999988888888999999998643 2222222 22233 8999998 5666666655 899999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-----eeeccc--eEEEEEec
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGD--VNTVKFFP 260 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~--i~~~~~~~ 260 (389)
...+.....+.. ........+.+++++|.++.+++ +..++.|+.||..... ...+ .++... ...++|+|
T Consensus 201 ~~~~~~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 201 KASGWAPTRIGQ-LGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GGGTTCEEEEEE-CCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEET
T ss_pred cCCCceeEEeee-ccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeC
Confidence 876654333210 00113456788999985555544 6678899999988652 2222 111111 13999999
Q ss_pred C-CCEEEEEecCCeEEEEECCCCceeeEeeccC-CC---------CCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEccc
Q 016458 261 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GE---------NEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL 328 (389)
Q Consensus 261 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 328 (389)
+ +.++++-..++.|+.|+.... ...+.... .. ........++++++|+++++-. .++.|+.|++.+
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 5 555666667889999997643 22222211 00 0122478999999999777776 788999999877
Q ss_pred ceEEEeecCc-C---------CCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 329 AKVVLNLGSL-Q---------NSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 329 ~~~~~~~~~~-~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+......... . ...-.....++++++|.++++-..++.|+.
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 7654333110 0 011246889999999888888878888887
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.61 E-value=5.4e-14 Score=119.27 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=131.7
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEE-----ecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEE
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 234 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 234 (389)
++..+++++.. .++++|+.++ +.+|++........ +.......+.. |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 58889999987 6788888875 55598654320000 00000023445 999999 55777777 88999999
Q ss_pred eCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEE
Q 016458 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
|+++. ........|..++.++.+.+. .+++++.||.|.+||+.++.... .. ..|++++|||+| +++
T Consensus 112 dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 112 DLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp ESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EEE
T ss_pred Echhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eEE
Confidence 99887 455566678888888877654 38889999999999999877643 11 139999999999 678
Q ss_pred EecCCcEEEEEcccceE--EEeecCcC-----CCCCCCeeEEEECCCCCeEEe
Q 016458 315 GYSNGDCYVWDTLLAKV--VLNLGSLQ-----NSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 315 ~~~dg~i~i~d~~~~~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~ 360 (389)
|..||.+++|+...+.. ..++.... .+|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887774 44442110 146789999999999998887
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.61 E-value=9.3e-12 Score=104.95 Aligned_cols=228 Identities=17% Similarity=0.112 Sum_probs=148.0
Q ss_pred EEEEEECCC-CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 112 VMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 112 v~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
.....|+|+ +.++++...++.|..|+..++. ...+ .....+.++.+.+++ .++++ +.+ .|.+||..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--------~~~~-~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~ 118 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR--------KTVH-ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTAT 118 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EEEE-ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--------EEEE-ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCC
Confidence 467789997 4556666678899999987643 1112 124578999999987 55544 444 499999988
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC------CCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCE
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
++........ .......+..++++| +++++++... .+.|..++ .+ . +..+..+......++|+|+++.
T Consensus 119 g~~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 119 GVLTLHAELE-SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp CCEEEEECSS-TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSCE
T ss_pred CcEEEEeeCC-CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCCE
Confidence 8754433110 011224588999998 6776665432 24565666 22 2 3333334456789999999987
Q ss_pred EEEE-ecCCeEEEEECC--CC-cee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCc
Q 016458 265 FGTG-SDDGTCRLFDIR--TG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 338 (389)
Q Consensus 265 l~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (389)
++.+ +.++.|.+||+. ++ ... ..+.... ........++++++|++.++...++.|.+||. +++.+..+
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i--- 266 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY--- 266 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE---
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE---
Confidence 7555 457899999986 55 321 1221111 11123678999999987777767788999998 56666666
Q ss_pred CCCCCCCeeEEEEC-CCCCeEEeeeCC
Q 016458 339 QNSHEGRITCLGLS-ADGSALCTGSWD 364 (389)
Q Consensus 339 ~~~~~~~v~~~~~~-~~~~~l~~~~~d 364 (389)
..+...+++++|+ +++..|+.++..
T Consensus 267 -~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 267 -EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 3455679999998 888777555443
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.60 E-value=2.1e-14 Score=121.74 Aligned_cols=183 Identities=11% Similarity=0.032 Sum_probs=131.5
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCC----CCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEE
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 185 (389)
.+++.+++++...++++|+.++ +.+|++..... ......... ...+.. |+.++| ++ ..|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG-DQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence 3689999999999999999885 56698764220 000111111 223556 999999 55 677777 8899999
Q ss_pred EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
||+.+....... ..+...+.++.+.+. + +++++.||.|.+||+... ... .+...|++++|+|+| +
T Consensus 111 ~dv~sl~~~~~~-----~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~-~~~----~~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 111 LDLEELSEFRTV-----TSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTK-STK----QLAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSSTTCEEEE-----EECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTC-CEE----EEEESEEEEEECSSE--E
T ss_pred EEchhhhccCcc-----ceeecceeeEEecCC--C-EEEEECCCCEEEEEccCC-ccc----cccCCceEEEEcCCc--e
Confidence 999877655444 355667888777653 2 888899999999999866 322 245689999999999 7
Q ss_pred EEEecCCeEEEEECCCCce--eeEeeccCC----CCCCCCeeEEEeCCCCCEEEE
Q 016458 266 GTGSDDGTCRLFDIRTGHQ--LQVYYQQHG----ENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~ 314 (389)
+.|..||.+++|+...+.. ...+..... ..+...|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 8899999999999887664 444422110 113456999999999998887
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.59 E-value=1.6e-13 Score=116.18 Aligned_cols=258 Identities=8% Similarity=-0.080 Sum_probs=171.3
Q ss_pred cEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec----------CCCcEEEEeCCCCCCCCCCCcceeeeccc--
Q 016458 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH-- 157 (389)
Q Consensus 90 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-- 157 (389)
+|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||..+.+ ....+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence 7889999999999999988776 799999999998886 36889999999855 44444322
Q ss_pred -----ccceEEEEEeeCCCcEEEEeeC--CCeEEE--EeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 158 -----KGYVSCCQYVPDEDTHLITSSG--DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 158 -----~~~v~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
......+.++|++. +++.+.. +..|.+ +|..+ ...+.. . .. ..+.|.....+++.+.|
T Consensus 118 ~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v----~--~~---~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKS----A--SC---FHIHPGAAATHYLGSCP 184 (368)
T ss_dssp CSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEEC----S--SC---CCCEEEETTEEECCCCT
T ss_pred cccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEEC----C--Cc---eEEccCCCeEEEEEcCC
Confidence 12355789999984 5665543 467888 89877 344421 1 11 12334355566777789
Q ss_pred CceEEEeCCC----CCccee----EEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce--eeEeeccC-----C
Q 016458 229 STARLWDTRV----ASRAVR----TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--LQVYYQQH-----G 293 (389)
Q Consensus 229 g~i~i~d~~~----~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-----~ 293 (389)
|.+.+.|+.. ..+... .+.....+. . ++++..++..+. +.+.+.|+..... ...+.... .
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 9999999876 212211 011112333 3 666666666666 9999999865321 12111100 0
Q ss_pred CCCCCCeeEEEeCCCCCEEEEEec-C--------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe-EEeee-
Q 016458 294 ENEIPHVTSIAFSISGRLLFAGYS-N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGS- 362 (389)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~- 362 (389)
.........++++|+++.++++.. + +.+.++|+.+.+.+..+. . .....+|+|+|||++ +++..
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----v-g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----N-GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----E-EEEECEEEECCSSSCEEEEEET
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----C-CCCcceEEECCCCCEEEEEccC
Confidence 000001222689999998887643 2 357799999999988873 2 226889999999984 56666
Q ss_pred CCCeeEEeecceecccCcccC
Q 016458 363 WDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.++.|.+ +|+.+++...
T Consensus 335 ~~~~VsV----ID~~t~kvv~ 351 (368)
T 1mda_H 335 GTEVLDI----YDAASDQDQS 351 (368)
T ss_dssp TTTEEEE----EESSSCEEEE
T ss_pred CCCeEEE----EECCCCcEEE
Confidence 5999999 9999998763
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.58 E-value=3e-12 Score=107.02 Aligned_cols=236 Identities=11% Similarity=0.069 Sum_probs=156.5
Q ss_pred eecccccCcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 61 RTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
..+..+.......+|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 34444555678899999998 6677778899999997 454 45566667779999999999977776667889999875
Q ss_pred CCCCCCCCCcce-eeeccc-ccceEEEEEeeCCCcEEEE----eeC-------------CCeEEEEeCCCCeeEEEecCc
Q 016458 140 SPTDKDGNLPVS-RMLSGH-KGYVSCCQYVPDEDTHLIT----SSG-------------DQTCVLWDITTGLRTSVFGGE 200 (389)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~ 200 (389)
. . .... ....+. ...+.++.+.++| .++++ |.. .+.|..+|..+++.....
T Consensus 116 g-~-----~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 116 G-Q-----AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp S-C-----EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred C-C-----EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 2 2 1011 111111 1346789999987 56665 332 356888888666544332
Q ss_pred ccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeE---E-eeeccceEEEEEecCCCEEEEEec
Q 016458 201 FQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRT---F-HGHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~---~-~~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
.......++|+| +++.|+++... +.|..||+.... +.. + ......+..++++++|++. +++.
T Consensus 186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~ 257 (305)
T 3dr2_A 186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG 257 (305)
T ss_dssp ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCS
T ss_pred ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecC
Confidence 123467899999 66666665554 689999987542 211 1 1123345678999999844 4444
Q ss_pred CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEE
Q 016458 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (389)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (389)
+ .|.+|+. .++.+..+.... .+..++|+++++.|++++.++ ++.++
T Consensus 258 ~-gv~~~~~-~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 258 T-GVCVFDS-DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp S-EEEEECT-TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C-cEEEECC-CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4 5999997 466666665432 278899999999888887764 44443
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.57 E-value=1.2e-12 Score=121.90 Aligned_cols=243 Identities=15% Similarity=0.137 Sum_probs=156.0
Q ss_pred CcEEEEEECCCCcEEEEe-----cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC----
Q 016458 110 AWVMTCAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---- 180 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 180 (389)
..+..++|||||++||.+ +....|++||+.++. .... ..+......++|+ |++ .|+.++.+
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~~-~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~ 198 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLET-PLKDVKFSGISWL-GNE-GFFYSSYDKPDG 198 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEEE-EEEEEESCCCEEE-TTT-EEEEEESSCCC-
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCcc-ccCCceeccEEEe-CCC-EEEEEEecCccc
Confidence 457888999999998853 333579999999855 1111 1111113567899 884 55555555
Q ss_pred ---------CeEEEEeCCCCee--EEEecCcccCC-CCCCeeEEEeeCCCCcEEE-EeeC---CCceEEEeCCCCCccee
Q 016458 181 ---------QTCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFV-SGSC---DSTARLWDTRVASRAVR 244 (389)
Q Consensus 181 ---------g~i~iwd~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-~~~~---dg~i~i~d~~~~~~~~~ 244 (389)
..|++|++.++.. ...+.. .. +.....++.++| ++++|+ +... +..|+++|+..+.....
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 3499999987653 233311 12 334578899999 566554 3332 35899999987644566
Q ss_pred EEeeeccceEEEEEecCCCEEEEEec----CCeEEEEECCCCce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 245 TFHGHEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
.+..+....... +++++..|+..+. .+.|..+|+.++.. ...+...... +. .|++++++|+....+
T Consensus 275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEEE
T ss_pred EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEEE
Confidence 676666665555 6676666655443 36799999987654 2333332221 33 888999888776554
Q ss_pred C---cEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC----CeeEEeecceecccCccc
Q 016458 319 G---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 319 g---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~~~~W~~~~~~~~ 382 (389)
+ .|++||+..+. ...+. ....+.+..+.+++++..|+....+ +.+.. ||+.+++..
T Consensus 347 ~g~~~l~~~d~~g~~-~~~l~---~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~----~d~~~g~~~ 409 (693)
T 3iuj_A 347 DATARVEQFDYEGKR-VREVA---LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR----FEPKSGAIS 409 (693)
T ss_dssp TTEEEEEEECTTSCE-EEEEC---CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE----ECTTTCCEE
T ss_pred CCeeEEEEEECCCCe-eEEee---cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE----EECCCCeEE
Confidence 4 68899987544 34442 2345567888888888877666554 78888 999887654
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.56 E-value=1.3e-12 Score=120.76 Aligned_cols=283 Identities=12% Similarity=0.077 Sum_probs=184.1
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-----------EEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-----------VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
+..|++++.++.|..+|..+|+.+..+...... ...+++ .+..+++++.|+.+..+|..+++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~----- 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK----- 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence 457777788899999999999998887654310 011222 46678888899999999998865
Q ss_pred Ccceeeeccc-c----cceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCC------------
Q 016458 148 LPVSRMLSGH-K----GYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSG------------ 204 (389)
Q Consensus 148 ~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~------------ 204 (389)
..-.+..+ . ..+..--...+ ..++.++. +|.|+.+|..+++.+..+.......
T Consensus 150 --~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 150 --EVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp --EEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred --EEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence 22222221 0 11111111122 24555543 7999999999999988774321110
Q ss_pred ---------------CCCCeeEEEeeCCCCcEEEEeeCCC-------------------ceEEEeCCCCCcceeEEee--
Q 016458 205 ---------------HTADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG-- 248 (389)
Q Consensus 205 ---------------~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~-- 248 (389)
.......++++| ..++++.++.++ .|..+|.+++ +.+-.+..
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~ 303 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETP 303 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESST
T ss_pred cccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCC
Confidence 001113567888 566777766553 4899999987 55444432
Q ss_pred ec-------cceEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC------CCC---------------
Q 016458 249 HE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE------NEI--------------- 297 (389)
Q Consensus 249 ~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~--------------- 297 (389)
|. ....-+....+| ..++.++.+|.++++|..+++.+......... ...
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 21 122233344477 68999999999999999999988766432110 000
Q ss_pred ---------CCeeEEEeCCCCCEEEEEecC-------------------------------------------CcEEEEE
Q 016458 298 ---------PHVTSIAFSISGRLLFAGYSN-------------------------------------------GDCYVWD 325 (389)
Q Consensus 298 ---------~~i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d 325 (389)
..-..++|+|++.++++...+ |.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 001257889998888876432 6799999
Q ss_pred cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
+.+++.+.... +..++....+..++..++.++.||.+++ ||..+|+...
T Consensus 464 ~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a----~D~~tG~~lw 512 (677)
T 1kb0_A 464 PVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVA----YHAATGEKLW 512 (677)
T ss_dssp TTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred CCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEE----EECCCCceee
Confidence 99999998873 2334444556667778889999999999 9999998753
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.56 E-value=9.9e-12 Score=104.78 Aligned_cols=226 Identities=12% Similarity=0.050 Sum_probs=146.0
Q ss_pred cEEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 69 KVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 69 ~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
-..+.+|+|++. ++++...++.|..||..+++.. .+.. ...+.+++|+++++++++. .+ .|.+||..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~---- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL---- 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence 356789999754 5666667889999998876543 3332 4579999999999877765 34 489999876431
Q ss_pred Ccceeeec--ccccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 148 LPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 148 ~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
....... .....+.++.++|+| +++++... .+.|..++ +++..... ........++|+| ++
T Consensus 122 -~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~------~~~~~~~~i~~s~-dg 190 (326)
T 2ghs_A 122 -TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF------ADISIPNSICFSP-DG 190 (326)
T ss_dssp -EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE------EEESSEEEEEECT-TS
T ss_pred -EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee------CCCcccCCeEEcC-CC
Confidence 1111111 112468899999998 45544332 35666666 45443322 1223467899998 55
Q ss_pred c-EEEEeeCCCceEEEeCC--CC-Cc-ceeEE---eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeecc
Q 016458 220 R-MFVSGSCDSTARLWDTR--VA-SR-AVRTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (389)
Q Consensus 220 ~-~l~~~~~dg~i~i~d~~--~~-~~-~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 291 (389)
+ ++++.+.++.|.+||+. ++ .. ....+ ......+..++++++|.+.++...++.|.+||. +++.+..+...
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 5 44555567899999985 32 11 11122 122345678999999987777767789999998 56666655433
Q ss_pred CCCCCCCCeeEEEeC-CCCCEEEEEecCC
Q 016458 292 HGENEIPHVTSIAFS-ISGRLLFAGYSNG 319 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~-~~~~~l~~~~~dg 319 (389)
.. .+++++|+ ++++.|++++..+
T Consensus 270 ~~-----~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 270 GK-----QTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CS-----BEEEEEEESTTSCEEEEEEBCT
T ss_pred CC-----CcEEEEEecCCCCEEEEEecCC
Confidence 22 38999998 8888776665443
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.55 E-value=4.1e-16 Score=133.72 Aligned_cols=258 Identities=12% Similarity=0.027 Sum_probs=144.5
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. ......+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------LTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-------SEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-------eeeeecc
Confidence 467899999999999999999999988876 4455555666787888888999999999977542 1111111
Q ss_pred c-cceE-EEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEe
Q 016458 158 K-GYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235 (389)
Q Consensus 158 ~-~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 235 (389)
. ..+. ...+. .+ ..+++++.++.|+.||..+++....+. .+. ...++| .+..+++++.++.|+.||
T Consensus 79 ~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p-~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 79 IPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSP-STSLLYLGRTEYTITMYD 146 (369)
T ss_dssp HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCC
T ss_pred CccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccc-cCCEEEEEecCCEEEEEE
Confidence 1 1110 00111 22 467888999999999999999887762 221 133455 667888889999999999
Q ss_pred CCCCCcceeEEeeeccceEEEEEecCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 236 TRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
.+++ +.+..+..+. ....++.++. ..+++++.||.|..||..+++.+........ .+....++++|...
T Consensus 147 ~~tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p-----v~~~~~~~~dg~~~ 218 (369)
T 2hz6_A 147 TKTR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP-----VVAFYVWQREGLRK 218 (369)
T ss_dssp SSSS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC-----EEEEEECTTSSCEE
T ss_pred CCCC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc-----eEEEEEecCCceEe
Confidence 9987 4444443221 1223333322 5677888999999999999998776653221 13344556666432
Q ss_pred ----EEEecCCcEEEEEcccce----EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecc
Q 016458 313 ----FAGYSNGDCYVWDTLLAK----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 313 ----~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
+.+ ++.++.+|..+++ ....... .+.+.+.. -.+..|+.++.||.+.. .+..
T Consensus 219 v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~-----~~~~~sp~--~~~g~lyv~~~~G~l~a----l~~~ 278 (369)
T 2hz6_A 219 VMHINVA--VETLRYLTFMSGEVGRITKWKYPF-----PKETEAKS--KLTPTLYVGKYSTSLYA----SPSM 278 (369)
T ss_dssp ECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCC-----CCHHHHHH--HSEEEECBEECSSCEEC----CEEE
T ss_pred ccceeec--ccceeeeehhcCCcccceeeeecc-----Cccccccc--cccceEEEecccCCEEe----cCcc
Confidence 122 4457777777776 5544421 11221111 12446788888898888 7665
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.54 E-value=2.2e-12 Score=119.42 Aligned_cols=282 Identities=12% Similarity=0.099 Sum_probs=179.6
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc----------E-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
+..|++++.++.|..+|..+|+.+..+...... + ..++. .+..+++++.|+.+..+|..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~---- 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR---- 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE----
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE----
Confidence 557888888899999999999999887654321 0 11111 356788888999999999988652
Q ss_pred Ccceeeecc--cc---cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccC-------------
Q 016458 148 LPVSRMLSG--HK---GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQS------------- 203 (389)
Q Consensus 148 ~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------- 203 (389)
.-.... +. ..+.+--...++ .++.++ .+|.|..||..+++.+..+......
T Consensus 144 ---~W~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 144 ---AWSVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp ---EEEEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred ---eeeecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 211111 10 111110011233 344443 3789999999999988876421000
Q ss_pred -------------CCCCCeeEEEeeCCCCcEEEEeeCCCc-------------------eEEEeCCCCCcceeEEee--e
Q 016458 204 -------------GHTADVLSVSISGSNSRMFVSGSCDST-------------------ARLWDTRVASRAVRTFHG--H 249 (389)
Q Consensus 204 -------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~ 249 (389)
........++++| ..++++.++.++. |..+|.+++ +.+-.+.. |
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~ 296 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPG 296 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTT
T ss_pred ccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCc
Confidence 0001112567887 6677888777653 999999988 55544443 2
Q ss_pred c-------cceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCC-----------------------C-
Q 016458 250 E-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-----------------------N- 295 (389)
Q Consensus 250 ~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------~- 295 (389)
. .++.......+|+ .++.++.+|.++++|..+++.+......... .
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 1222223333565 7889999999999999999987443221100 0
Q ss_pred ----------CCCCeeEEEeCCCCCEEEEEec---------------------------------------------CCc
Q 016458 296 ----------EIPHVTSIAFSISGRLLFAGYS---------------------------------------------NGD 320 (389)
Q Consensus 296 ----------~~~~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~ 320 (389)
.......++|+|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0001223788898888877632 377
Q ss_pred EEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
|..||+.+++.+.... .+ .++..-.+...+.++++++.||.++. ||.++|++.
T Consensus 457 l~A~D~~tG~~~W~~~----~~-~~~~~g~~~tagglvf~gt~dg~l~a----~D~~tG~~l 509 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVP----YV-TIFNGGTLSTAGNLVFEGSADGRVIA----YAADTGEKL 509 (689)
T ss_dssp EEEEETTTTEEEEEEE----ES-SSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred EEEEECCCCCeEeEcc----CC-CCccCccceECCCEEEEECCCCcEEE----EECCCCccc
Confidence 9999999999998873 22 22333345556778999999999999 999999876
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.53 E-value=2.6e-11 Score=104.58 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=171.3
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCC---------CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---------AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.+..+++++.++.|..+|..+++.+....... ..+.+. ...++..+++++.++.|..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~------ 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT------ 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC------
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC------
Confidence 35688888889999999999999887776532 222221 12245677888889999999998765
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
..-.............. .+ ..++.++.++.|..+|..+++....................... +..+++++.+
T Consensus 125 -~~W~~~~~~~~~~~p~~-~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~ 197 (376)
T 3q7m_A 125 -VAWQTKVAGEALSRPVV-SD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDN 197 (376)
T ss_dssp -EEEEEECSSCCCSCCEE-ET--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTT
T ss_pred -EEEEEeCCCceEcCCEE-EC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCC
Confidence 22222211111111112 22 36888889999999999999888776321100000000122222 3467778889
Q ss_pred CceEEEeCCCCCcceeEEeeecc-------ceEEEEEec--CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCC
Q 016458 229 STARLWDTRVASRAVRTFHGHEG-------DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 299 (389)
+.+..+|..++ +.+........ .+..+...| .+..+++++.++.+..+|..+++........ .
T Consensus 198 g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~ 269 (376)
T 3q7m_A 198 GRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------S 269 (376)
T ss_dssp TEEEEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------C
T ss_pred CEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------C
Confidence 99999999877 44433331110 000011111 3567888888999999999999877655421 1
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
...+.. ++..+++++.++.|..+|..+++....... .....+..... .+..|+.++.+|.+.+ +|..+|
T Consensus 270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~--~~~~l~v~~~~g~l~~----~d~~tG 338 (376)
T 3q7m_A 270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVL--YNGNLVVGDSEGYLHW----INVEDG 338 (376)
T ss_dssp EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEE--ETTEEEEECTTSEEEE----EETTTC
T ss_pred CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEE--ECCEEEEEeCCCeEEE----EECCCC
Confidence 334443 466888888999999999999998877631 11222222233 2457888889999999 999998
Q ss_pred ccc
Q 016458 380 ALS 382 (389)
Q Consensus 380 ~~~ 382 (389)
++.
T Consensus 339 ~~~ 341 (376)
T 3q7m_A 339 RFV 341 (376)
T ss_dssp CEE
T ss_pred cEE
Confidence 865
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.53 E-value=1.5e-10 Score=98.61 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=150.2
Q ss_pred CCCcEEEE-ecCCCcEEEEeCCCCCCCCCCCcceeeec------c-cccceEEEEEeeCCCcEEEEeeCC------CeEE
Q 016458 119 PTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLS------G-HKGYVSCCQYVPDEDTHLITSSGD------QTCV 184 (389)
Q Consensus 119 ~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d------g~i~ 184 (389)
+++++|++ +..++.|.++|+.+.. ........+. . -......+...|++ +++++..+ |.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence 77777765 5567899999997532 1223444442 1 11245567788887 56665554 7899
Q ss_pred EEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-------------------CCCceEEEeCCCCCcceeE
Q 016458 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT 245 (389)
Q Consensus 185 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 245 (389)
++|..+.+.+..+... ......-..+-|+| +.+.+++.. .+.+|.+||+.+. +.+..
T Consensus 168 vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t 243 (462)
T 2ece_A 168 MLDHYSFEPLGKWEID--RGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS 243 (462)
T ss_dssp EECTTTCCEEEECCSB--CTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred EEECCCCeEEEEEccC--CCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence 9999999999888422 11222344678898 777777774 3689999999975 66666
Q ss_pred Eeee--ccceEEEEE--ecCCCEEEEEe------cCCeEEEEECCCCcee--eEeeccCC--CC-----------CCCCe
Q 016458 246 FHGH--EGDVNTVKF--FPDGNRFGTGS------DDGTCRLFDIRTGHQL--QVYYQQHG--EN-----------EIPHV 300 (389)
Q Consensus 246 ~~~~--~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~--~~~~~~~~--~~-----------~~~~i 300 (389)
+..- ......+.| +|+++++++++ .++.|.+|....+... ..+..... .. .....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 6542 123455656 99999988777 4568887766543211 11100000 00 01246
Q ss_pred eEEEeCCCCCEEEEEec-CCcEEEEEccc---ceEEEeecCcCCC------C------CCCeeEEEECCCCCeEEeee
Q 016458 301 TSIAFSISGRLLFAGYS-NGDCYVWDTLL---AKVVLNLGSLQNS------H------EGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~------~------~~~v~~~~~~~~~~~l~~~~ 362 (389)
..+.+|+||++|+++.. .+.|.+||+.. .+.+..+.. .+ | .+....++++|||++|+++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 88999999999998875 57899999852 345544431 11 0 12368899999999999888
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.51 E-value=3e-12 Score=108.35 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=173.3
Q ss_pred CcccCCCcceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec
Q 016458 49 PVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (389)
Q Consensus 49 ~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 128 (389)
...++ ...+....+..+...+.++...+++. |..++.+ |..+|. +++....+...........+. +..+.+++
T Consensus 42 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t 114 (330)
T 3hxj_A 42 LYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTS 114 (330)
T ss_dssp TEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEEC
T ss_pred EEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEe
Confidence 34455 44444444544555567788877774 5555544 888885 565544433332222222232 55677788
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCC
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 208 (389)
.++.+..+|.. +. ...........+.++...+++ .++.++.++.|..+|.. +.....+. .....
T Consensus 115 ~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~-----~~~~~ 178 (330)
T 3hxj_A 115 MDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFK-----TNDAI 178 (330)
T ss_dssp TTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEE-----CSSCC
T ss_pred cCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEe-----cCCCc
Confidence 88999999877 33 222233333344555555554 47778888999999998 77666652 33445
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (389)
+.++...+ ++.+++ ++ +.|..+| .++ ............+.++...+++. |.+++.++.|..+|. ++.....+
T Consensus 179 ~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 179 TSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp CSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEE
T ss_pred eeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEe
Confidence 66666655 555554 44 8899999 544 44445544455678888887775 566677788888874 56655555
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
..... .+..+.+.+++ .|.+++.+|.|..+|. +++....+ ......+.++..+++|. |..++.+|.++
T Consensus 251 ~~~~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~----~~~~~~~~~~~~d~~g~-l~~gt~~G~~~ 318 (330)
T 3hxj_A 251 KTGKR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF----ETGSWIIATPVIDENGT-IYFGTRNGKFY 318 (330)
T ss_dssp ECSSC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTCC-EEEECTTSCEE
T ss_pred eCCCC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE----EcCCccccceEEcCCCE-EEEEcCCCeEE
Confidence 43222 13445555555 5667778888999996 67766666 33455677788877776 66688899998
Q ss_pred E
Q 016458 369 V 369 (389)
Q Consensus 369 i 369 (389)
+
T Consensus 319 ~ 319 (330)
T 3hxj_A 319 A 319 (330)
T ss_dssp E
T ss_pred E
Confidence 8
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.50 E-value=1.3e-11 Score=114.08 Aligned_cols=262 Identities=11% Similarity=0.097 Sum_probs=169.6
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C----CcEEEEEECCCCcEEEEecC------CCcEEEEeCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C----AWVMTCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~ 147 (389)
+..|++++.|+.|..+|..+|+.+..+... . ..+..--.. .+..+++++. +|.|+.||..+++.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~---- 202 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGER---- 202 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcE----
Confidence 457888889999999999999999888765 2 111110000 2345555543 68999999988652
Q ss_pred Ccceeeec--------------------------------ccccceEEEEEeeCCCcEEEEeeCCC--------------
Q 016458 148 LPVSRMLS--------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQ-------------- 181 (389)
Q Consensus 148 ~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------- 181 (389)
.-.+. +.......+++.+++ .+++.++.++
T Consensus 203 ---~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 203 ---KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp ---EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCC
T ss_pred ---EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCC
Confidence 11111 111112356788876 5677666554
Q ss_pred -----eEEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEeee
Q 016458 182 -----TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (389)
Q Consensus 182 -----~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 249 (389)
.|..+|..+++....+....... .......+.... ++ ..++.++.+|.++++|.+++ +.+......
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~ 356 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFV 356 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESS
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCC-CEecccccc
Confidence 59999999999988874321000 011222233333 44 68899999999999999987 554443311
Q ss_pred c-----------cce------------------------EEEEEecCCCEEEEEecC-----------------------
Q 016458 250 E-----------GDV------------------------NTVKFFPDGNRFGTGSDD----------------------- 271 (389)
Q Consensus 250 ~-----------~~i------------------------~~~~~~~~~~~l~~~~~d----------------------- 271 (389)
. .++ ..++++|+..++++...+
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 0 001 157889988888876432
Q ss_pred --------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 272 --------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 272 --------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
|.|..||+.+++.+..+..... +....+..++..+++++.||.+++||..+++.
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 7899999999998877754321 33445666788899999999999999999999
Q ss_pred EEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 332 VLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
+..+.. .+.....-+.|..+|+.+++
T Consensus 511 lw~~~~---~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 511 LWEAPT---GTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred eeeeeC---CCCcccCCEEEEeCCEEEEE
Confidence 998853 33233344556677764443
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.49 E-value=1.9e-10 Score=99.11 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=162.6
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeeccc
Q 016458 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (389)
Q Consensus 78 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 157 (389)
++..+++++.++.|..+|..+++.+............... .+..+++++.++.+..+|..+++ ........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~-------~~W~~~~~ 172 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA-------VKWTVNLD 172 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC-------EEEEEECC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc-------EEEEEeCC
Confidence 3457888889999999999999998777655322111112 24577888889999999998755 22222111
Q ss_pred ccce-----EEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CC---e-eEEEeeCCCCcEEEEee
Q 016458 158 KGYV-----SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--AD---V-LSVSISGSNSRMFVSGS 226 (389)
Q Consensus 158 ~~~v-----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~l~~~~ 226 (389)
.... ...... + ..++.++.++.|..+|..+++.............. .. + ..... .+..+++++
T Consensus 173 ~~~~~~~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~ 246 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALA 246 (376)
T ss_dssp C-----CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEEC
T ss_pred CCceeecCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEe
Confidence 1100 111122 2 36788888999999999999888776321100000 00 1 11111 235667777
Q ss_pred CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 227 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.++.+..+|.+++ +.+.... ......+.. ++..+++++.++.|..+|..+++........... .+.....
T Consensus 247 ~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~- 316 (376)
T 3q7m_A 247 YNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR----LLTSPVL- 316 (376)
T ss_dssp TTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS----CCCCCEE-
T ss_pred cCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC----cccCCEE-
Confidence 8999999999877 4443332 223344443 4668888889999999999999877665422111 1222222
Q ss_pred CCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCCCCeEEeeeCCCeeEE
Q 016458 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.+..|++++.+|.|+++|..+++.+.... .....+. .... .+..|+.++.+|.+..
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~----~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQK----VDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTCCEEEEEE----CCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred -ECCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 35688889999999999999999887773 2222222 1222 2457888899999988
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.49 E-value=2.2e-11 Score=112.81 Aligned_cols=262 Identities=14% Similarity=0.157 Sum_probs=166.3
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeC-C-CcEEEEEECC---CCcEEEEec------CCCcEEEEeCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLP-C-AWVMTCAFSP---TGQSVACGG------LDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~vw~~~~~~~~~~~ 147 (389)
+..|++++.|+.|..+|..+|+.+..+... . .....+..+| ++. +++++ .+|.|..||..+++.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~---- 195 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKE---- 195 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCE----
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcE----
Confidence 457888889999999999999998877653 1 1111111122 444 44443 368899999988652
Q ss_pred Ccceeeec-------------------------------ccccceEEEEEeeCCCcEEEEeeCCCe--------------
Q 016458 148 LPVSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQT-------------- 182 (389)
Q Consensus 148 ~~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------- 182 (389)
.-.+. ++......+.+.|++ .+++.++.++.
T Consensus 196 ---~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 196 ---AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp ---EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCC
T ss_pred ---EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCc
Confidence 11110 011111256788876 57787777763
Q ss_pred -----EEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCCc---EEEEeeCCCceEEEeCCCCCcceeEEeeec
Q 016458 183 -----CVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (389)
Q Consensus 183 -----i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 250 (389)
|..+|..+++....+....... ............ ++. .++.++.+|.++++|.+++ +.+.......
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~ 349 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVP 349 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSC
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCC-CEeccccccc
Confidence 9999999999988874311000 111222222222 333 7889999999999999887 4432211000
Q ss_pred ----------------------------c-----------ceEEEEEecCCCEEEEEec---------------------
Q 016458 251 ----------------------------G-----------DVNTVKFFPDGNRFGTGSD--------------------- 270 (389)
Q Consensus 251 ----------------------------~-----------~i~~~~~~~~~~~l~~~~~--------------------- 270 (389)
. .-..++|+|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 0 0113788898888877532
Q ss_pred ------------------------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEc
Q 016458 271 ------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (389)
Q Consensus 271 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (389)
+|.|..||+.+++.+..+..... ...-.+...+.++++|+.||.++.||.
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------FNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------ccCccceECCCEEEEECCCCcEEEEEC
Confidence 37899999999998877755332 223355567889999999999999999
Q ss_pred ccceEEEeecCcCCCCCCCeeEEEECCCCCeEEe
Q 016458 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
.+++.+..+.. .+.....-+.|..+|+..++
T Consensus 504 ~tG~~lw~~~~---~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 504 DTGEKLWEQPA---ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTCCEEEEEEC---SSCCCSCCEEEEETTEEEEE
T ss_pred CCCccceeeeC---CCCcccCceEEEECCEEEEE
Confidence 99999998853 22222234666677764433
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.49 E-value=6.2e-10 Score=90.98 Aligned_cols=251 Identities=9% Similarity=0.039 Sum_probs=155.9
Q ss_pred CeEEEEecCCcEEEEeCCCCCee-----EEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceee
Q 016458 80 NRIVSASQDGRLIVWNALTSQKT-----HAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRM 153 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 153 (389)
++|+.+.. +.|+.+++...... ..+......+..++|++++..|+ +-..++.|..++..... ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~ 73 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI 73 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence 35555554 47888887654421 12222334578999999665555 44557899999987532 1222
Q ss_pred ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC--CCce
Q 016458 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTA 231 (389)
Q Consensus 154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i 231 (389)
..........+++.++++.++++....+.|.++++......... .........++++|.++.++++... .+.|
T Consensus 74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-----ECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 22222467889999876566666677889999998754433322 1222457899999845555555433 4688
Q ss_pred EEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 232 RLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
..+++... ....+. ..-.....++++|++..|+.+ ...+.|.++|+.......... .. .....++.. +
T Consensus 149 ~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~-----~~P~gi~~d--~ 218 (267)
T 1npe_A 149 ETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GL-----QYPFAVTSY--G 218 (267)
T ss_dssp EEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CC-----CSEEEEEEE--T
T ss_pred EEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CC-----CCceEEEEe--C
Confidence 88887643 222222 222457899999987666554 456899999987543322222 11 124566654 4
Q ss_pred CEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCC
Q 016458 310 RLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (389)
Q Consensus 310 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 356 (389)
..|+.+. .++.|..+|..+++.+..+. .+.......+++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCCCceEEEc---cccccccceeeecCccC
Confidence 5555554 56799999999999888874 12222467788888764
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=124.25 Aligned_cols=224 Identities=11% Similarity=0.005 Sum_probs=123.7
Q ss_pred CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 120 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
++..+++++.||.|+.||..+++ ....+.. +.+.+..+..++ ..+++++.||.|+.||..+++....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57789999999999999998865 3333333 344444445554 5677788999999999998887666521
Q ss_pred cccCCCCCCee-EEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEE
Q 016458 200 EFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (389)
Q Consensus 200 ~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 278 (389)
.. ...+. +..+. .+..+++++.++.|+.||.+++ +.+..+..+. ...++|++..+++++.|+.|+.||
T Consensus 78 ~~----~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 78 TI----PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp CH----HHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred cC----ccccccCceEe--cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence 10 00110 00111 3356778888999999999987 5554544332 245567888999999999999999
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCC---CEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee-EEEECCC
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD 354 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~ 354 (389)
.++++.+..+.... ....+++++. ..+++++.+|.|+.||..+++.+.... ...++. ...++++
T Consensus 147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d 214 (369)
T 2hz6_A 147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE 214 (369)
T ss_dssp SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence 99998776654321 1223333332 467778899999999999999988873 233443 3455666
Q ss_pred CCeEEe--eeCCCeeEEeecceecccCc
Q 016458 355 GSALCT--GSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 355 ~~~l~~--~~~dg~i~i~~~~W~~~~~~ 380 (389)
|...+. ...++.++. ++..+|+
T Consensus 215 g~~~v~~~~~~~~~l~~----ld~~tG~ 238 (369)
T 2hz6_A 215 GLRKVMHINVAVETLRY----LTFMSGE 238 (369)
T ss_dssp SCEEECCEEEEHHHHHH----HHHHHHH
T ss_pred ceEeccceeecccceee----eehhcCC
Confidence 643211 011344555 6666665
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=1.1e-11 Score=105.44 Aligned_cols=243 Identities=13% Similarity=0.078 Sum_probs=153.0
Q ss_pred CcEEEEEECCCCcEEEEec--CCCcEEEEeCCCCCCCCCCCcc-eeeecccccceEEEEEeeCCCcEEEEeeC-----CC
Q 016458 110 AWVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQ 181 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg 181 (389)
..+..++++++|+.+++.. .++.++||.+..+... .++. ......+-..+..+++.+++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 5789999999999988853 2343566665432100 0000 01122355678999999986 55554433 57
Q ss_pred eEEEEeCCCCeeEEEecCc-ccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcceeEEeeeccceE-EE
Q 016458 182 TCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVN-TV 256 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~-~~ 256 (389)
.|.+||+.+++....+... ....+...+..+++++.++..+++.. .++.|.+||+.+. +..+.+..|..... ..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence 8999999999877666321 11123345789999984555556655 6789999999866 44444433322110 14
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-cEEEEEccc---ce--
Q 016458 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLL---AK-- 330 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~---~~-- 330 (389)
.+.+++..+.+.+.+|.+..|.. .+..++|+|+|+.|+++..++ .++.++... +.
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred ceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 45557777777777877755531 267899999999888887766 455554321 00
Q ss_pred ---EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 331 ---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 331 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
....+.. .++.+....++++++|.++++...++.|.+ |+..+|++
T Consensus 234 ~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~----~d~~~G~~ 281 (343)
T 2qe8_A 234 DAELGSKIER--YSEKPICDGISIDKDHNIYVGDLAHSAIGV----ITSADRAY 281 (343)
T ss_dssp HHHHHTTCEE--EEECCSCSCEEECTTCCEEEEEGGGTEEEE----EETTTTEE
T ss_pred hhhhhcceEe--cccCCCCceEEECCCCCEEEEccCCCeEEE----EECCCCCE
Confidence 0000000 123345678999999999999888999999 99856654
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.44 E-value=3.9e-12 Score=107.59 Aligned_cols=263 Identities=16% Similarity=0.118 Sum_probs=164.1
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcce
Q 016458 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (389)
Q Consensus 72 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 151 (389)
+.....++ .|..++.++.|..|| .+++.......+...+.++...+++. +.+++.+ +..+|... . ..
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g-~-------~~ 90 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINPDG-T-------EK 90 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECCCG-G-------GG
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECCCC-c-------EE
Confidence 44454555 566777888899999 88887666555555567777777765 4445544 77777532 2 11
Q ss_pred eeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCce
Q 016458 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 231 (389)
Q Consensus 152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (389)
..............+. + ..+..++.++.|..+|.. +....... .....+.++...+ ++. +..++.++.|
T Consensus 91 ~~~~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~~~-~g~-l~vgt~~~~l 159 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFK-----TKKAIYATPIVSE-DGT-IYVGSNDNYL 159 (330)
T ss_dssp GGSCC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEECT-TSC-EEEECTTSEE
T ss_pred EEEECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEc-----CCCceeeeeEEcC-CCE-EEEEcCCCEE
Confidence 1111111111222222 3 457788889999999998 76665552 2333455556654 444 5667778999
Q ss_pred EEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
..+|.. + .....+......+.++...+++.+++ ++ +.|..+| .+++......... ..+.++...++|.
T Consensus 160 ~~~d~~-g-~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~-----~~~~~~~~~~~g~- 227 (330)
T 3hxj_A 160 YAINPD-G-TEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY-----WTVTRPAISEDGT- 227 (330)
T ss_dssp EEECTT-S-CEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS-----CCCSCCEECTTSC-
T ss_pred EEECCC-C-CEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC-----cceeceEECCCCe-
Confidence 999988 4 55555554555677777877777544 44 7899999 6776665554322 2377788888875
Q ss_pred EEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcc
Q 016458 312 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
|.+++.++.|..+|. +++.+..+. .....+.++.+.+++ .|..++.+|.+.. ++. +|+.
T Consensus 228 l~v~t~~~gl~~~~~-~g~~~~~~~----~~~~~~~~~~~~~~g-~l~v~t~~ggl~~----~d~-~g~~ 286 (330)
T 3hxj_A 228 IYVTSLDGHLYAINP-DGTEKWRFK----TGKRIESSPVIGNTD-TIYFGSYDGHLYA----INP-DGTE 286 (330)
T ss_dssp EEEEETTTEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTS-CEEEECTTCEEEE----ECT-TSCE
T ss_pred EEEEcCCCeEEEECC-CCCEeEEee----CCCCccccceEcCCC-eEEEecCCCCEEE----ECC-CCcE
Confidence 555667788888884 566665552 233334456666666 4667777878887 775 4543
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=2.1e-10 Score=101.17 Aligned_cols=275 Identities=11% Similarity=0.029 Sum_probs=174.5
Q ss_pred EEEEecCCcEEEEeCCCCCeeEEEeeC---------------------------------------CCcEEEEEECC---
Q 016458 82 IVSASQDGRLIVWNALTSQKTHAIKLP---------------------------------------CAWVMTCAFSP--- 119 (389)
Q Consensus 82 l~~~~~dg~v~iw~~~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~--- 119 (389)
|.+|+..|.++|+-+.+++.+..+... .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 667888899999988888777666321 01112233443
Q ss_pred --CCcEEEEecC-CCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEE-e-eCCCcEEEEee---------------
Q 016458 120 --TGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQY-V-PDEDTHLITSS--------------- 178 (389)
Q Consensus 120 --~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~~~~--------------- 178 (389)
||+++++... ++.|.+.|+.+.+ +...+.- ....+..+++ . |++ .++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~-------~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMK-------CDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCce-------EeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence 7788776654 5679999998744 3332221 1234667777 4 787 4566553
Q ss_pred ---CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--------------------------
Q 016458 179 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------------------------- 229 (389)
Q Consensus 179 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------------- 229 (389)
.++.+.+.|..+.+....+.. . .....++++| +++++++++.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~V-----g-g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLV-----S-GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEE-----S-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEEe-----C-CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 356899999999988888732 1 1345667888 666666666442
Q ss_pred ------------ceEEEeCCCCC-cc-eeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCc-----------
Q 016458 230 ------------TARLWDTRVAS-RA-VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH----------- 283 (389)
Q Consensus 230 ------------~i~i~d~~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----------- 283 (389)
.|.+.|.++.. .. +..+. -.....++.++|||+++++++ .+..|.++|+.+.+
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 47777777621 23 33443 234568899999999887666 67899999998643
Q ss_pred -eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc----------ceEEEeecCcCC-CCCCCeeEEEE
Q 016458 284 -QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQN-SHEGRITCLGL 351 (389)
Q Consensus 284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~-~~~~~v~~~~~ 351 (389)
........ .....++|+|+|....+...|+.|.+||+.. .+.+..+..... +|...-.++.+
T Consensus 322 ~v~~~v~vG------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 322 AVVAEPELG------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp GEEECCBCC------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred ceEEEcCCC------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 11222111 2368899999994344456789999999987 556666632111 22222233456
Q ss_pred CCCCCeEEeeeC---CCee----------EEeecceecccCccc
Q 016458 352 SADGSALCTGSW---DTNL----------KVNLGFWRVQEGALS 382 (389)
Q Consensus 352 ~~~~~~l~~~~~---dg~i----------~i~~~~W~~~~~~~~ 382 (389)
+|||++|+++.. |..+ .+ .|+..+++.
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql----~dis~~~m~ 435 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQL----IDISGDKMV 435 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEE----EECSSSSCE
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceE----EEcCCCcEE
Confidence 899999998764 3332 56 788766653
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.34 E-value=1.1e-08 Score=83.51 Aligned_cols=237 Identities=7% Similarity=-0.075 Sum_probs=145.5
Q ss_pred cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 201 (389)
.+|+.+.. +.|+.++++..... .......+......+..++|.++++.++++-..++.|..+++.........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---- 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---- 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE----
T ss_pred cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE----
Confidence 34555443 47888888763311 000011122223457889999976566667777899999999876544333
Q ss_pred cCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec---CCeEEEEE
Q 016458 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFD 278 (389)
Q Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d 278 (389)
.........+++++.++.++++....+.|.++++... ...............++++|++..|+.+.. .+.|..++
T Consensus 75 -~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 75 -RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp -CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred -ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 2223467899999855666666666789999998743 221122222245789999997666655543 46888888
Q ss_pred CCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCe
Q 016458 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 357 (389)
+... ....+... .......+++++++..|+.+. ..+.|.++|.........+ .. ......++.. ++.+
T Consensus 153 ~dg~-~~~~~~~~----~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~----~~-~~~P~gi~~d-~~~l 221 (267)
T 1npe_A 153 MDGT-NRRILAQD----NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL----EG-LQYPFAVTSY-GKNL 221 (267)
T ss_dssp TTSC-CCEEEECT----TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE----EC-CCSEEEEEEE-TTEE
T ss_pred cCCC-CcEEEEEC----CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe----cC-CCCceEEEEe-CCEE
Confidence 7643 33322211 112378999999887766655 4578999998765443333 11 2234567764 3444
Q ss_pred EEeeeCCCeeEEeecceecccCccc
Q 016458 358 LCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 358 l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
+++....+.|.+ .+..+|+..
T Consensus 222 yva~~~~~~v~~----~d~~~g~~~ 242 (267)
T 1npe_A 222 YYTDWKTNSVIA----MDLAISKEM 242 (267)
T ss_dssp EEEETTTTEEEE----EETTTTEEE
T ss_pred EEEECCCCeEEE----EeCCCCCce
Confidence 444445688988 898887643
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.32 E-value=1.1e-09 Score=86.39 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=132.1
Q ss_pred ceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
....+.|+ ++ .++.+.+.+| .|+++|+.+++....... .....-..++.. ++.+.+..-.++.+.+||..
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence 34778887 54 6777777766 899999999999888732 111112334544 45666666678999999999
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
+. +.+.++.... ....++++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+..-.
T Consensus 116 t~-~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 116 NL-RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp TC-CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred cC-cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 87 6777766422 22334457777877777889999999999988887664322222235667776 6765554446
Q ss_pred CCcEEEEEcccceEEEeecCc--C------CCCCCCeeEEEECCCCCeEEeeeC
Q 016458 318 NGDCYVWDTLLAKVVLNLGSL--Q------NSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~--~------~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
++.|.+.|..+++.+..+... . .......+.|||+|+++.|...+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 789999999999998887531 0 011246689999998887777664
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.31 E-value=1.9e-09 Score=86.35 Aligned_cols=205 Identities=8% Similarity=0.048 Sum_probs=140.5
Q ss_pred ceEEEEEeeCCCcEEEEeeC--CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC
Q 016458 160 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
....+.|++++ .++++.+. ++.|.++|+.+++....+.. ........+++. ++.+.++.-.++.+.++|..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 35789999875 55555443 68999999999999888742 122233455665 44666666678999999998
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
+. +.+..+..... ....+++|++.++++..++.|.++|..+.+....+...........++.+.|. +|...+....
T Consensus 95 t~-~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 95 TL-SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp TT-EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CC-cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 77 66666653211 22446668888887778899999999998888887654322222236788887 6754444445
Q ss_pred CCcEEEEEcccceEEEeecCcC-------C--CCCCCeeEEEECCCCCe-EEeeeCCCeeEEeecceecccC
Q 016458 318 NGDCYVWDTLLAKVVLNLGSLQ-------N--SHEGRITCLGLSADGSA-LCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
++.|.+.|..+++.+..+.... . ........|+|+|+++. ++++...+.+.+ -++.+.
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~----i~l~~~ 238 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE----IKLHLV 238 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE----EEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE----EEEecc
Confidence 7899999999999988885310 0 01135689999998765 455556788877 666554
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.31 E-value=1.5e-09 Score=100.31 Aligned_cols=282 Identities=14% Similarity=0.134 Sum_probs=174.8
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc----------E-EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW----------V-MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
+..|++++.++.|..+|..+|+.+..+...... + ..+++ .+..+++++.|+.+..+|..+++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~----- 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK----- 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence 457778888899999999999998887643211 0 11122 35678888889999999998865
Q ss_pred Ccceeeeccc----ccceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccCCC------------
Q 016458 148 LPVSRMLSGH----KGYVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQSGH------------ 205 (389)
Q Consensus 148 ~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~------------ 205 (389)
..-..... ...+.+--...++ .++.+.. +|.|..+|..+++.+..+........
T Consensus 139 --~~W~~~~~~~~~~~~~~~~P~v~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 214 (668)
T 1kv9_A 139 --AIWSQQTTDPAKPYSITGAPRVVKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (668)
T ss_dssp --EEEEEECSCTTSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred --EeeeeccCCCCCcceecCCCEEECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence 22111110 0111110011132 4555443 58999999999999887742100000
Q ss_pred --------------CCCeeEEEeeCCCCcEEEEeeCCC-------------------ceEEEeCCCCCcceeEEee--ec
Q 016458 206 --------------TADVLSVSISGSNSRMFVSGSCDS-------------------TARLWDTRVASRAVRTFHG--HE 250 (389)
Q Consensus 206 --------------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~ 250 (389)
......+++.| ..++++.++.++ .|..+|.+++ +.+-.+.. |.
T Consensus 215 ~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~ 292 (668)
T 1kv9_A 215 KTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGD 292 (668)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTC
T ss_pred ccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCc
Confidence 01112467777 556777777665 3899999987 55444432 21
Q ss_pred -------cceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCC-------CCC----------------
Q 016458 251 -------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEI---------------- 297 (389)
Q Consensus 251 -------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~---------------- 297 (389)
.+.....+..+|+ .++.++.+|.++++|..+++.+......... ...
T Consensus 293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 372 (668)
T 1kv9_A 293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV 372 (668)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence 2233333334665 6889999999999999999987443221100 000
Q ss_pred --------CCeeEEEeCCCCCEEEEEe------------------------------------cCCcEEEEEcccceEEE
Q 016458 298 --------PHVTSIAFSISGRLLFAGY------------------------------------SNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 298 --------~~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~ 333 (389)
..-..++++|+...+++.. .+|.|..||+.+++.+.
T Consensus 373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W 452 (668)
T 1kv9_A 373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452 (668)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence 0012367788777666521 23789999999999988
Q ss_pred eecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 334 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
.... ..+.....+...+.++++++.||.++. ||..+|++.
T Consensus 453 ~~~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a----~d~~tG~~l 492 (668)
T 1kv9_A 453 KVPY-----PTHWNGGTLSTAGNLVFQGTAAGQMHA----YSADKGEAL 492 (668)
T ss_dssp EEEE-----SSSCCCCEEEETTTEEEEECTTSEEEE----EETTTCCEE
T ss_pred EccC-----CCCCcCceeEeCCCEEEEECCcccchh----hhhhcChhh
Confidence 7742 122333333345778889999999999 999999865
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.29 E-value=9.9e-09 Score=87.50 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=141.8
Q ss_pred CCCCeEEE-EecCCcEEEEeCCCC----CeeEEEe-------eCCCcEEEEEECCCCcEEEEecCC------CcEEEEeC
Q 016458 77 SERNRIVS-ASQDGRLIVWNALTS----QKTHAIK-------LPCAWVMTCAFSPTGQSVACGGLD------SVCSIFNL 138 (389)
Q Consensus 77 ~~~~~l~~-~~~dg~v~iw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~ 138 (389)
+++++|+. +..+++|.++|+.+. +...++. ........+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77776655 556789999998654 4444442 112245667888999 66665444 78999998
Q ss_pred CCCCCCCCCCcceeeeccc---ccceEEEEEeeCCCcEEEEee-------------------CCCeEEEEeCCCCeeEEE
Q 016458 139 NSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSS-------------------GDQTCVLWDITTGLRTSV 196 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~ 196 (389)
.+.+ +....... ...-..+.|+|++ +.+++.. .+..|.+||+.+++....
T Consensus 172 ~T~~-------v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFE-------PLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCC-------EEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCe-------EEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 8754 44444321 1223457889987 5666663 478999999999887777
Q ss_pred ecCcccCCCCCCeeEEEe--eCCCCcEEEEee------CCCceEEEeCCCCC-cceeE--Eeee----------------
Q 016458 197 FGGEFQSGHTADVLSVSI--SGSNSRMFVSGS------CDSTARLWDTRVAS-RAVRT--FHGH---------------- 249 (389)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~-~~~~~--~~~~---------------- 249 (389)
+... ........+.| +| +++++++++ .+++|.+|....+. ..... +...
T Consensus 244 I~vg---~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLG---EENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESC---TTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecC---CCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 7321 11233445555 88 555555554 56788776654321 00111 1110
Q ss_pred ccceEEEEEecCCCEEEEEe-cCCeEEEEECCCC---ceeeEeeccCC---------CCCCCCeeEEEeCCCCCEEEEEe
Q 016458 250 EGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG---HQLQVYYQQHG---------ENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
......|.++|||++|+++. ..+.|.+||+... +.+..+..... ..-......++++|||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 23467899999999998776 4689999998633 33333332200 00011247899999999999987
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.26 E-value=5.7e-09 Score=94.41 Aligned_cols=284 Identities=13% Similarity=0.036 Sum_probs=169.8
Q ss_pred CCeEEEEec-CCcEEEEeC-CCCCeeEEEeeCCCc-E----------EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 016458 79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-V----------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 79 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 145 (389)
+..++.++. ++.|.-+|. .+|+.+..+...... + ..++. .+..+++++.|+.+..+|..+++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~- 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN- 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE-
Confidence 446777777 889999999 899998877644310 0 11122 3567888888999999999876521
Q ss_pred CCCcceeeeccccc--ceEEEEEeeCCCcEEEEeeC------CCeEEEEeCCCCeeEEEecCcccC--------------
Q 016458 146 GNLPVSRMLSGHKG--YVSCCQYVPDEDTHLITSSG------DQTCVLWDITTGLRTSVFGGEFQS-------------- 203 (389)
Q Consensus 146 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------- 203 (389)
.......+.. .+.+--...++ .++.++. ++.|..+|..+++.+..+......
T Consensus 139 ----W~~~~~~~~~~~~~~~~P~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 139 ----WEVEVCDPKVGSTLTQAPFVAKD--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp ----EEEECCCGGGTCBCCSCCEEETT--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ----EEecCCCCCccceeccCCEEECC--EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 1111111110 11110011232 4555544 799999999999988876432100
Q ss_pred -------------------CCCCCeeEEEeeCCCCcEEEEeeCC----------------CceEEEeCCCCCcceeEEee
Q 016458 204 -------------------GHTADVLSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 204 -------------------~~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~ 248 (389)
........+++.+ ....++.++.+ +.|..+|.+++ +.+-.+..
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~ 290 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK 290 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence 0000002355666 34455554432 35889999887 44444432
Q ss_pred --e--------ccceEEEEEecCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCC--------CCCCe-------
Q 016458 249 --H--------EGDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--------EIPHV------- 300 (389)
Q Consensus 249 --~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~i------- 300 (389)
| ..++ -+...++|+ .++.++.+|.+.++|..+++.+.......... ...++
T Consensus 291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 1 1122 122234674 57788899999999999998877664322000 00001
Q ss_pred -------------------eEEEeCCCCCEEEEEe-------------------------------------cCCcEEEE
Q 016458 301 -------------------TSIAFSISGRLLFAGY-------------------------------------SNGDCYVW 324 (389)
Q Consensus 301 -------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~i~i~ 324 (389)
..++++|+..++++.. .+|.|..|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 3467888877777654 24789999
Q ss_pred EcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
|+.+++.+..... ...+.+..+...+..++.++.||.++. ||..+|++..
T Consensus 450 D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a----~D~~tG~~lw 499 (571)
T 2ad6_A 450 DLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKA----LDNKDGKELW 499 (571)
T ss_dssp CTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred ECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEE----EECCCCCEEE
Confidence 9999998887742 122222222234567778899999999 9999998763
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.25 E-value=1.3e-07 Score=89.66 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=180.2
Q ss_pred EEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEE-eeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 70 v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
|.++...+++.+.+ ++.++-|..|+..+++..... ......|.++...+++.+.+....+| +..|+..+..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~------ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKE------ 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTE------
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCe------
Confidence 88888888775444 665545889998776543321 12345688888887777555443344 8888876532
Q ss_pred cceeeec-------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCc--ccCCCCCCeeEEEeeCCCC
Q 016458 149 PVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 149 ~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 219 (389)
...... -....|.++...+++ .+..|+.+ -|.+||..++......... ........|.++...+ ++
T Consensus 247 -~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 321 (795)
T 4a2l_A 247 -IKNYLHSPSNPKSISSNYIRSLAMDSQN--RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QG 321 (795)
T ss_dssp -EEEECCCTTCTTSCSCSBEEEEEECTTS--CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TS
T ss_pred -EEEeecCCCCccccCCCeEEEEEEcCCC--CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-Cc
Confidence 111111 123568888888776 35556655 5889998877654432111 0112345789998886 55
Q ss_pred cEEEEeeCCCceEEEeCCCCCcceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 220 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
. |..|+.++-|..|+.... ....+.. ....|.++...++|. |..|+.++-|..||..++..........
T Consensus 322 ~-lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 322 G-MWLGTYFGGLNYYHPIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp C-EEEEESSSCEEEECGGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred C-EEEEECCCCeEEeCCCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence 4 455777778999987643 2222221 234688999888876 5557777789999987654332221110
Q ss_pred C---CCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 293 G---ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 293 ~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
. ......|.+++..++|+.|.+|+.++-|..||..+++...............|.++...++|.+.+.. .+| +.+
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~ 475 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVR 475 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeE
Confidence 0 01123589999988888677777777899999887764433211111345679999999888755544 444 666
Q ss_pred eecceecccCcccCc
Q 016458 370 NLGFWRVQEGALSPW 384 (389)
Q Consensus 370 ~~~~W~~~~~~~~~~ 384 (389)
|+..+++...+
T Consensus 476 ----~~~~~~~~~~~ 486 (795)
T 4a2l_A 476 ----FNPEQRSFTTI 486 (795)
T ss_dssp ----EETTTTEEEEC
T ss_pred ----EeCCCCeEEEc
Confidence 88777665443
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.25 E-value=9e-09 Score=93.09 Aligned_cols=286 Identities=12% Similarity=0.034 Sum_probs=169.6
Q ss_pred CCeEEEEec-CCcEEEEeC-CCCCeeEEEeeCCCc-----------EEEEEECCCCcE----EEEecCCCcEEEEeCCCC
Q 016458 79 RNRIVSASQ-DGRLIVWNA-LTSQKTHAIKLPCAW-----------VMTCAFSPTGQS----VACGGLDSVCSIFNLNSP 141 (389)
Q Consensus 79 ~~~l~~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~vw~~~~~ 141 (389)
+..|++++. ++.|.-+|. .+|+.+-.+...... ...+++.|.+.. +++++.|+.+.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 889999999 899998877654321 122445443444 888888999999999876
Q ss_pred CCCCCCCcceeeecccc--cceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCC---------
Q 016458 142 TDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSG--------- 204 (389)
Q Consensus 142 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~--------- 204 (389)
+.. .......+. ..+.+--...++ .++.++ .+|.|+.+|..+++.+..+.......
T Consensus 142 ~~~-----W~~~~~~~~~~~~~~ssP~v~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 142 ETV-----WKVENSDIKVGSTLTIAPYVVKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp CEE-----EEEECCCGGGTCBCCSCCEEETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CEE-----EeecCCCCCccceeecCCEEECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 521 111111110 011110011232 455554 38999999999999988774321100
Q ss_pred C-----------------------CCCe-eEEEeeCCCCcEEEEeeCC----------------CceEEEeCCCCCccee
Q 016458 205 H-----------------------TADV-LSVSISGSNSRMFVSGSCD----------------STARLWDTRVASRAVR 244 (389)
Q Consensus 205 ~-----------------------~~~v-~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~ 244 (389)
. ...+ ..+++.+ ...+++.++.+ +.|..+|.+++ +..-
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~~W 292 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKF 292 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ceee
Confidence 0 0000 1345556 45566666554 37889999887 5544
Q ss_pred EEeeec----------cceEEEEEe-cCC---CEEEEEecCCeEEEEECCCCceeeEeeccCCC--------CCCC----
Q 016458 245 TFHGHE----------GDVNTVKFF-PDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--------NEIP---- 298 (389)
Q Consensus 245 ~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~---- 298 (389)
.++... .++. +... .+| ..++.++.+|.+.++|..+++.+......... ....
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 371 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD 371 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence 443221 1121 2222 467 46778899999999999999988765432100 0000
Q ss_pred ----------------------CeeEEEeCCCCCEEEEEe---------------------------------------c
Q 016458 299 ----------------------HVTSIAFSISGRLLFAGY---------------------------------------S 317 (389)
Q Consensus 299 ----------------------~i~~~~~~~~~~~l~~~~---------------------------------------~ 317 (389)
.-..++++|+..++++.. .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~ 451 (599)
T 1w6s_A 372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451 (599)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence 012456777766655431 3
Q ss_pred CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 318 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.|.|..||+.+++.+...... .+...-.....+.+++.++.||.++. +|..+|++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagg~vf~gt~dg~l~A----~D~~tG~~lW 508 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER-----FAVWGGTMATAGDLVFYGTLDGYLKA----RDSDTGDLLW 508 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES-----SCCCSBCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred cCeEEEEECCCCCEEeEecCC-----CCccCcceEecCCEEEEECCCCeEEE----EECCCCCEEE
Confidence 478999999999988877421 11111111224567778999999999 9999998653
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.24 E-value=5.9e-09 Score=82.34 Aligned_cols=189 Identities=6% Similarity=-0.016 Sum_probs=133.0
Q ss_pred eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC
Q 016458 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (389)
Q Consensus 161 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 240 (389)
...+.|+. +.++.+.+.+|.|+++|+.+++....+ . ........+++. ++.+++..-.++.+.+||..+.
T Consensus 57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l----~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl- 126 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R----LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP- 126 (268)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E----CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT-
T ss_pred cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C----CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcC-
Confidence 46778863 478888888999999999999887775 1 111122335554 5566666677899999999987
Q ss_pred cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc
Q 016458 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (389)
Q Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (389)
+.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+....+...........++.+.|. +|+..+....++.
T Consensus 127 ~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 127 QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 6777776422 223444 57888888878999999999999988887665433333346778876 7754444446779
Q ss_pred EEEEEcccceEEEeecCc---------CCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 321 CYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 321 i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
|.+.|..+++.+..+... ........+.|||+|+++.|+..+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999998887532 0112346799999997766665553
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.23 E-value=5.7e-10 Score=98.41 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=152.4
Q ss_pred CCCCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEE-C-CCCcEEEEec------------------CCCcEE
Q 016458 77 SERNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAF-S-PTGQSVACGG------------------LDSVCS 134 (389)
Q Consensus 77 ~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~ 134 (389)
+||++|+.... ++.|.+.|+.+.+....+..+. ..+..+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37777776554 5679999999999888666543 45788887 5 9999998884 345788
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC---------------------------------
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--------------------------------- 181 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------------------------- 181 (389)
+.|.++.+ ....+.--. ....+.++|++ .++++.+.+.
T Consensus 179 vID~~t~~-------v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 179 AVDADKWE-------VAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEETTTTE-------EEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EEECCCCe-------EEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 88888633 333333211 34556788887 4555544321
Q ss_pred -----eEEEEeCCC--Cee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------c
Q 016458 182 -----TCVLWDITT--GLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------A 242 (389)
Q Consensus 182 -----~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~ 242 (389)
.|.+.|..+ +.. +..+ .......++.++|++..+++++..+.+|.++|+.+... .
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~I------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYI------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEE------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eeEECcEEEEeCcccCCceeEEEE------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 366666665 333 3333 12235678899994444556666789999999985411 1
Q ss_pred eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCC----------CceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT----------GHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
.... .-......++|+|+|...++...|+.|.+||+.. ...+..+..+....|...-..+.++|||++|
T Consensus 324 ~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 1122 2234578899999995455666899999999877 4455555554332221112334568999999
Q ss_pred EEEecC--CcE-----------EEEEcccce
Q 016458 313 FAGYSN--GDC-----------YVWDTLLAK 330 (389)
Q Consensus 313 ~~~~~d--g~i-----------~i~d~~~~~ 330 (389)
++...- .++ .++|+..++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 987542 233 889986544
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.22 E-value=1.3e-07 Score=89.68 Aligned_cols=290 Identities=10% Similarity=0.055 Sum_probs=180.1
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee-------CCCcEEEEEECCCCcEEEEecCCCcEEEEeCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-------PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~ 139 (389)
...|.++...+++.+. .|+.++-+..||..+++....... ....|.++...++|.+.+. +.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence 4578899888877544 455444488999776554332211 2356999999988876554 445 47888876
Q ss_pred CCCCCCCCCcceeee-------cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcc-cCCCCCCeeE
Q 016458 140 SPTDKDGNLPVSRML-------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF-QSGHTADVLS 211 (389)
Q Consensus 140 ~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~ 211 (389)
... ..... .-....|.++...++| .+..|+.++-|..|+..+........... .......|.+
T Consensus 291 ~~~-------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~ 361 (795)
T 4a2l_A 291 TDS-------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSC 361 (795)
T ss_dssp TTE-------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEE
T ss_pred CCe-------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEE
Confidence 532 11111 1123568888888876 47778888889999876654332211100 0113456888
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---------eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
+...+ +++ |..|+.++-|..||..+. . ...+. .....|.+++..+++..|.+|+.++-|..||..++
T Consensus 362 i~~d~-~g~-lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 362 IVEDK-DKN-LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEECT-TSC-EEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred EEECC-CCC-EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 88876 554 455777778999998754 2 22221 11356889998888885777787778999998876
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC--cCCCCCCCeeEEEECCCCCeEEe
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS--LQNSHEGRITCLGLSADGSALCT 360 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~ 360 (389)
+... +...........|.++...++|++.+.+ . +.+.+||..+++....... ........|.++..+++|.+.+.
T Consensus 438 ~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 438 QVEN-FNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred cEEE-eecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 5433 2221111223358999998888765544 4 4599999887654432210 00123467999999999876654
Q ss_pred eeCCCeeEEeecceecccCcc
Q 016458 361 GSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 361 ~~~dg~i~i~~~~W~~~~~~~ 381 (389)
. .+ .+.. |+..+++.
T Consensus 515 t-~~-Gl~~----~~~~~~~~ 529 (795)
T 4a2l_A 515 G-EE-GLSV----FKQEGLDI 529 (795)
T ss_dssp E-SS-CEEE----EEEETTEE
T ss_pred e-CC-ceEE----EeCCCCeE
Confidence 4 44 4666 77766554
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.22 E-value=4.3e-08 Score=78.48 Aligned_cols=210 Identities=11% Similarity=0.094 Sum_probs=136.0
Q ss_pred eeEEEeeCC-CcEEEEEECCCCcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecc-cccceEEEEEeeCCCcEEEE
Q 016458 101 KTHAIKLPC-AWVMTCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLIT 176 (389)
Q Consensus 101 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~ 176 (389)
.+.++.... .....++|++++.++++.+. ++.|.++|+.+++ ....+.- .......+++. ++.+.++
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcceEEEEEe--CCEEEEE
Confidence 444554333 23688999998755555443 6799999999865 3333321 11122234444 4466667
Q ss_pred eeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----c
Q 016458 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----G 251 (389)
Q Consensus 177 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~ 251 (389)
.-.++.+.++|..+.+.+..+.. + ...-.. ++++...+++ +..++.|.++|..+. +....+.-.. .
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~----g-~~~g~g--lt~Dg~~l~v-s~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTH----Q-MKDGWG--LATDGKILYG-SDGTSILYEIDPHTF-KLIKKHNVKYNGHRVI 152 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEEC----C-SSSCCE--EEECSSSEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECC
T ss_pred EecCCEEEEEECCCCcEEEEEEC----C-CCCeEE--EEECCCEEEE-ECCCCeEEEEECCCC-cEEEEEEECCCCcccc
Confidence 77789999999999999888842 1 112233 4443444554 456889999999887 5555554221 1
Q ss_pred ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEE-EecCCcEE
Q 016458 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFA-GYSNGDCY 322 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~ 322 (389)
.++.+.|. ++...+....++.|.+.|..+++....+.... ........+.++|+|+++.+++ +...+.+.
T Consensus 153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 36678888 67555555568899999999999988886531 0111124689999999875555 44677888
Q ss_pred EEEcccc
Q 016458 323 VWDTLLA 329 (389)
Q Consensus 323 i~d~~~~ 329 (389)
+.++...
T Consensus 232 ~i~l~~~ 238 (266)
T 2iwa_A 232 EIKLHLV 238 (266)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 8887654
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=8.4e-09 Score=95.30 Aligned_cols=243 Identities=12% Similarity=0.114 Sum_probs=152.4
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCc-EEEEEECC--CCcEEEEecC------CCcEEEEeCCCCCCCCCCCc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~ 149 (389)
+..++.++.|+.|..+|..+|+.+..+...... ...+.-+| .+..++++.. +|.|..+|..+++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~------ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL------ 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE------
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE------
Confidence 457888888999999999999999887653210 00011111 1334555432 58899999887652
Q ss_pred ceeeec-------------------------------ccccceEEEEEeeCCCcEEEEeeCCC-----------------
Q 016458 150 VSRMLS-------------------------------GHKGYVSCCQYVPDEDTHLITSSGDQ----------------- 181 (389)
Q Consensus 150 ~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~~~dg----------------- 181 (389)
.-.+. ++......+++.+.. .+++.++.++
T Consensus 191 -~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 191 -AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp -EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred -EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence 11110 011111246777775 5677777665
Q ss_pred --eEEEEeCCCCeeEEEecCcccCC----CCCCeeEEEeeCCCCc---EEEEeeCCCceEEEeCCCCCcceeEEeeec--
Q 016458 182 --TCVLWDITTGLRTSVFGGEFQSG----HTADVLSVSISGSNSR---MFVSGSCDSTARLWDTRVASRAVRTFHGHE-- 250 (389)
Q Consensus 182 --~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 250 (389)
.|..+|..+++....+....... ...+.....+.. +++ .++.++.+|.++++|..++ +.+.......
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~ 346 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVT 346 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCC
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccc
Confidence 49999999999988874321000 012222222222 333 6889999999999999887 4442221110
Q ss_pred ----------cc------------------------eEEEEEecCCCEEEEEe---------------------------
Q 016458 251 ----------GD------------------------VNTVKFFPDGNRFGTGS--------------------------- 269 (389)
Q Consensus 251 ----------~~------------------------i~~~~~~~~~~~l~~~~--------------------------- 269 (389)
.+ -..++++|+..++++..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 00 01267788766665421
Q ss_pred ---------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 270 ---------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 270 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
.+|.|..||+.+++.......... .....+...+.++++++.||.++.||..+++.+..+..
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC------CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 248899999999998877654322 22333445678899999999999999999999988853
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.21 E-value=3.9e-07 Score=75.88 Aligned_cols=247 Identities=11% Similarity=0.054 Sum_probs=144.8
Q ss_pred cceeeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCC--cE
Q 016458 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS--VC 133 (389)
Q Consensus 56 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i 133 (389)
..+....|... .....++|+++++++++-..++.|..||... .....+.. ...+..+++.++++++++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34555556443 4578999999998777776889999999764 44333333 35688999999999666554332 35
Q ss_pred EEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-EEEecCc----ccCCCCCC
Q 016458 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGE----FQSGHTAD 208 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~ 208 (389)
..++..++. ........ .......++..+.+ ..+++...++.|.++|...+.. +...... .....-..
T Consensus 98 ~~~d~~~g~-----~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 98 VSLVKSDGT-----VETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEECTTSC-----EEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEcCCCCe-----EEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 556655432 11111111 11223344444433 4455544688999999876532 2111100 00111123
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc--eeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
...+ +++++.++++-...+.|..||+...... ...+. .......++++++|+++++....+.|.++|.. ++...
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 4455 6634456666667789999998742111 12221 12346779999999887777778899999975 55432
Q ss_pred EeeccCCCCCCCCeeEEEeC---CCCCEEEEEecCC
Q 016458 287 VYYQQHGENEIPHVTSIAFS---ISGRLLFAGYSNG 319 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg 319 (389)
...... .....++++|. |+++.|++++..+
T Consensus 247 ~~~~~~---~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 IAQAEQ---GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECGGG---TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred Eeeccc---ccCCceEEEEecccCCCCEEEEECCCC
Confidence 211111 11247899998 8888887776544
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.19 E-value=2.2e-08 Score=78.44 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=131.9
Q ss_pred cceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 236 (389)
.....+.|++ +.++.+.+.+| .|+.+|+.+++....... .....-..++.. ++.+++..-.++.+.+||.
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 3456888876 36666766654 899999999999888732 111122334444 5566667777899999999
Q ss_pred CCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.+. +.+.++..... -..++ ++++.|+.+..++.|.++|..+.+....+...........++.+.+. +|+..+..-
T Consensus 93 ~tl-~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 93 ATL-TPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp TTT-EEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CcC-cEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 987 67777664322 23444 56777777777899999999999888887664432222346677765 666554444
Q ss_pred cCCcEEEEEcccceEEEeecCcC---------CCCCCCeeEEEECCCCCeEEeeeC
Q 016458 317 SNGDCYVWDTLLAKVVLNLGSLQ---------NSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
.+..|.+.|..+++.+..+.... .......+.|+++|+++.|...+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67799999999999988875321 012246789999998777766654
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.19 E-value=8.9e-08 Score=80.44 Aligned_cols=242 Identities=14% Similarity=0.071 Sum_probs=147.4
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeC--------------------CCcEEEEEECC-CCcEEEE
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------------CAWVMTCAFSP-TGQSVAC 126 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~ 126 (389)
....+++|++++++++++..++.|..|+..++... .+... ...+..+++.+ ++++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v- 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI- 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence 34667899999987888888999999997765433 22211 12478899998 565444
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCccee-eecc-cccceEEEEEee-CCCcEEEEeeC-----------------CCeEEEE
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSR-MLSG-HKGYVSCCQYVP-DEDTHLITSSG-----------------DQTCVLW 186 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~iw 186 (389)
+...+.|..++..++. ..... ...+ .......+++.+ ++ +++++... ++.|..+
T Consensus 97 ~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence 4444457888766422 00111 1111 113467899999 77 55554322 3779999
Q ss_pred eCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCC-cceeEEeeeccceEEEEEecCCCE
Q 016458 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNR 264 (389)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 264 (389)
|..++...... ........++++| +++ ++++-+..+.|..|++.... .....+....+ ...+++.++|++
T Consensus 171 d~~~~~~~~~~------~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 171 DPSTKETTLLL------KELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp ETTTTEEEEEE------EEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred eCCCCEEEEec------cCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence 98777644332 1123456789998 665 44554567899999987431 11122222223 788999999987
Q ss_pred EEEEec----------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 265 FGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 265 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
.++... .+.|..+|.. ++.+..+...... ....++.+++ .+++++++...++.|..+++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-ccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 666544 4678899864 6666666543221 1223666666 4565555555677899998753
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.19 E-value=5.5e-08 Score=88.11 Aligned_cols=285 Identities=18% Similarity=0.115 Sum_probs=166.1
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE---------EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcc
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV---------MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 150 (389)
..+++++.++.|.-+|..+|+.+..+....... ..+++ .+..+++++.++.+.-+|..+++.. .
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~-----W 141 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVV-----W 141 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEE-----E
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEE-----e
Confidence 456666664459999999999988876543210 11112 3567788888999999999886521 1
Q ss_pred eeeeccccc--ceE-EEEEeeC---CCcEEEEee------CCCeEEEEeCCCCeeEEEecCccc---------------C
Q 016458 151 SRMLSGHKG--YVS-CCQYVPD---EDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQ---------------S 203 (389)
Q Consensus 151 ~~~~~~~~~--~v~-~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------~ 203 (389)
......+.. .+. .-....+ +...+++++ .++.|..+|..+++.+........ .
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 111111110 111 0111221 212566655 378999999999998876532100 0
Q ss_pred C---------------------CCCCeeEEEeeCCCCcEEEEeeC--------------------C----CceEEEeCCC
Q 016458 204 G---------------------HTADVLSVSISGSNSRMFVSGSC--------------------D----STARLWDTRV 238 (389)
Q Consensus 204 ~---------------------~~~~v~~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~ 238 (389)
. ....-..+++.| ...+++.+.. | +.|..+|.++
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred ccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 0 000012345666 4455655542 2 5799999988
Q ss_pred CCcceeEEee--ec--------cceEEEEEe-cCCC---EEEEEecCCeEEEEECCCCceeeEeeccCCCC---------
Q 016458 239 ASRAVRTFHG--HE--------GDVNTVKFF-PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--------- 295 (389)
Q Consensus 239 ~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------- 295 (389)
+ +.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+..+......+
T Consensus 301 G-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 378 (582)
T 1flg_A 301 G-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT 378 (582)
T ss_dssp C-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT
T ss_pred C-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC
Confidence 7 44444432 21 1111 2221 3664 78889999999999999999887654432000
Q ss_pred --------------------CC-----------CCeeEEEeCCCCCEEEEEe----------------------------
Q 016458 296 --------------------EI-----------PHVTSIAFSISGRLLFAGY---------------------------- 316 (389)
Q Consensus 296 --------------------~~-----------~~i~~~~~~~~~~~l~~~~---------------------------- 316 (389)
.. .....++++|+...+++..
T Consensus 379 g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 458 (582)
T 1flg_A 379 GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIK 458 (582)
T ss_dssp CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred CCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeec
Confidence 00 0012456777666555533
Q ss_pred -----cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccC
Q 016458 317 -----SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 317 -----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~ 383 (389)
.+|.|..||+.+++.+...... .++..-.....+.+++.++.||.++. ||.++|++..
T Consensus 459 p~~~~~~G~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagglvf~g~~dg~l~A----~D~~tG~~lW 521 (582)
T 1flg_A 459 RMYDDHVGSLRAMDPVSGKVVWEHKEH-----LPLWAGVLATAGNLVFTGTGDGYFKA----FDAKSGKELW 521 (582)
T ss_dssp ESCSSCSEEEEEECTTTCCEEEEEEES-----SCCCSCCEEETTTEEEEECTTSEEEE----EETTTCCEEE
T ss_pred CCCCCCcceEEEEECCCCCEEEEecCC-----CCCcccceEeCCCEEEEECCCCcEEE----EECCCCCEEE
Confidence 2578999999999998877421 11211111123567888999999999 9999998753
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.16 E-value=9.7e-08 Score=79.54 Aligned_cols=227 Identities=12% Similarity=0.067 Sum_probs=137.5
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-C-CeEEEEe
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-D-QTCVLWD 187 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-g~i~iwd 187 (389)
.....++|+++++++++-..++.|..|+..... .... .....+..+++.+++ +++++... + ..|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--------~~~~-~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--------QIHA-TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--------EEEE-ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--------EEEE-eCCCCceeEEEcCCC-cEEEEeccCCcceEEEEc
Confidence 457789999999877777678899999876521 1111 123467889999987 45554433 2 2577778
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---------eeccceEEEEE
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKF 258 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~ 258 (389)
..+++....... ........++..+ ++..+++...++.|+.+|.......+.... ..-...+.+
T Consensus 102 ~~~g~~~~~~~~----~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 102 KSDGTVETLLTL----PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp CTTSCEEEEEEC----TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred CCCCeEEEEEeC----CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 777765443321 1122234444444 455555544588899998764311111110 011134455
Q ss_pred ecCCCEEEEE-ecCCeEEEEECCC-Cce--eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEE-
Q 016458 259 FPDGNRFGTG-SDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL- 333 (389)
Q Consensus 259 ~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 333 (389)
+|+++.|+++ ...+.|..|++.. +.. ...+... .....++++++|+++++....+.|.++|.. ++...
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES------CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc------CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 7888766554 4678999999875 321 1111111 125678999999887777678899999975 55432
Q ss_pred -eecCcCCCCCCCeeEEEEC---CCCCeEEeeeCC
Q 016458 334 -NLGSLQNSHEGRITCLGLS---ADGSALCTGSWD 364 (389)
Q Consensus 334 -~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 364 (389)
.+ .......++++|. |+++.|+.++..
T Consensus 248 ~~~----~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQA----EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECG----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eec----ccccCCceEEEEecccCCCCEEEEECCC
Confidence 23 2223568999998 887777766554
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.15 E-value=3.1e-08 Score=89.68 Aligned_cols=261 Identities=16% Similarity=0.161 Sum_probs=155.3
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcE-EEEEECC--CCcEEEEecC------CCcEEEEeCCCCCCCCCCCc
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWV-MTCAFSP--TGQSVACGGL------DSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~ 149 (389)
+..++.++.|+.|..+|..+|+.+.......... ..+.-+| .+..+++++. ++.|..+|..+++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~------ 188 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL------ 188 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE------
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE------
Confidence 4467788889999999999999988776432100 0011111 1334555544 78999999987652
Q ss_pred ceeeeccc-------------------------------------ccce-EEEEEeeCCCcEEEEeeCC-----------
Q 016458 150 VSRMLSGH-------------------------------------KGYV-SCCQYVPDEDTHLITSSGD----------- 180 (389)
Q Consensus 150 ~~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~~l~~~~~d----------- 180 (389)
.-.+... .+.+ ..+++.+.. ..++.+..+
T Consensus 189 -~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~g 266 (571)
T 2ad6_A 189 -KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp -EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred -EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCC
Confidence 1111100 0000 124566654 345544422
Q ss_pred -----CeEEEEeCCCCeeEEEecCcccC-----CCCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEe
Q 016458 181 -----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFH 247 (389)
Q Consensus 181 -----g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 247 (389)
+.|..+|..+++....+...... ....++. +.... ++ .+++.++.+|.++++|..++ +.+....
T Consensus 267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~ 343 (571)
T 2ad6_A 267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENG-NLIVAEK 343 (571)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCC-CEEeeec
Confidence 36999999999998877432100 0112221 22222 44 46778888999999999887 4443332
Q ss_pred eec-------------cce--------------------------EEEEEecCCCEEEEEe-------------------
Q 016458 248 GHE-------------GDV--------------------------NTVKFFPDGNRFGTGS------------------- 269 (389)
Q Consensus 248 ~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~------------------- 269 (389)
... .++ ..++++|+..++++..
T Consensus 344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 423 (571)
T 2ad6_A 344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF 423 (571)
T ss_dssp SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCc
Confidence 111 011 2467888777777654
Q ss_pred ------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE
Q 016458 270 ------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (389)
Q Consensus 270 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (389)
.+|.|..||+.+++.+..+..... +....+...+..+++++.||.|+.+|..+++.
T Consensus 424 ~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 347899999999998877654322 22222233566788899999999999999999
Q ss_pred EEeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458 332 VLNLGSLQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 332 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
+..+.........+ +.+..+|+.++
T Consensus 498 lw~~~~~~~~~~~p---~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSP---MTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred EEEEeCCCCcEeee---EEEEECCEEEE
Confidence 98885322222223 33546676444
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=5.9e-07 Score=85.05 Aligned_cols=294 Identities=12% Similarity=0.055 Sum_probs=176.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe--------------eCCCcEEEEEECCCCcEEEEecCCCc
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------------LPCAWVMTCAFSPTGQSVACGGLDSV 132 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 132 (389)
...|.++...++|. |..|+..+-|.++|..+........ .....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 35699999888875 5556664558889987665432211 2345699999988886 455666666
Q ss_pred EEEEeCCCCCCCCCCCccee-------eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCC
Q 016458 133 CSIFNLNSPTDKDGNLPVSR-------MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 205 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 205 (389)
|..++...... .... ........|.++...+++ .|..|+.++-|..||..++...... .. ....
T Consensus 335 l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~-~~-~~~~ 405 (781)
T 3v9f_A 335 INFISNAPPTF-----HTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK-EN-RELL 405 (781)
T ss_dssp EEEECSSCCSC-----EEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------CC
T ss_pred EEEeCCCCCcc-----eeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc-CC-CCCC
Confidence 88888765321 0000 001123568888877765 4677777777899998754332211 00 0223
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe---eeccceEEEEEecCCCEEEEEecCCeEEEEECCCC
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 282 (389)
...|.++...+ ++.+ ..|+.++-|..+|..+. . ...+. .....|.++...+++. |..|+. +-|..||..++
T Consensus 406 ~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 406 SNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASK 479 (781)
T ss_dssp CSBEEEEEECT-TSCE-EEEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSS
T ss_pred CcceEEEEECC-CCCE-EEEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCC
Confidence 45688888775 5554 45676677899987654 2 22222 1245688888887776 444555 56889998776
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
+................|.++...++|++.+ |+.++-+..||..+++... +..........|.++..+++|.+.++ +
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T 556 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-T 556 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence 5433222111111124589999998887655 4444458889887665433 32111223457899999999876554 4
Q ss_pred CCCeeEEeecceecccCcccCc
Q 016458 363 WDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
.+|.+.. |+..+++...+
T Consensus 557 ~~Glv~~----~d~~~~~~~~~ 574 (781)
T 3v9f_A 557 GEGLVCF----PSARNFDYQVF 574 (781)
T ss_dssp TTEEEEE----SCTTTCCCEEE
T ss_pred CCCceEE----ECCCCCcEEEc
Confidence 4676577 88877765544
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.14 E-value=4.4e-07 Score=76.87 Aligned_cols=246 Identities=12% Similarity=0.019 Sum_probs=152.6
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKD 145 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~ 145 (389)
.+..+|.+..++. +|+.+.. ..|+..++........+. ....+..++|++.+..|+ +-...+.|..+++....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--- 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--- 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CCCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC---
Confidence 4456677777744 5554443 458888876655443333 345588999998665555 44567889999887633
Q ss_pred CCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe
Q 016458 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (389)
..............+++.+.+..++++-...+.|.+.++......... .........+++.|.++.++++-
T Consensus 107 ----~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 107 ----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp ----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CTTCSCEEEEEEETTTTEEEEEE
T ss_pred ----ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-----eCCCCCcceEEEecCcCeEEEec
Confidence 122222222345678888766567777777889999998765544433 23345678999998666666665
Q ss_pred eCC-CceEEEeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeE
Q 016458 226 SCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (389)
Q Consensus 226 ~~d-g~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~ 302 (389)
... +.|..+++... ....+ ...-...+.++++|++..|+.+ ...+.|..+|+............ ......
T Consensus 178 ~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~~~P~g 250 (349)
T 3v64_C 178 WGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----LPHPFA 250 (349)
T ss_dssp CSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEE
T ss_pred cCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-----CCCceE
Confidence 555 78888887643 22222 1223357899999876666555 45678999998754332222211 123577
Q ss_pred EEeCCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 303 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
+++ ..+..+++-...+.|..++..+++....+
T Consensus 251 iav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 251 ITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 887 34445555556678888886566554444
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=1.5e-07 Score=79.12 Aligned_cols=248 Identities=7% Similarity=-0.041 Sum_probs=146.8
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-----------------ecccccceEEEEEee-CCC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-----------------LSGHKGYVSCCQYVP-DED 171 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~-~~~ 171 (389)
.....++|.+++++++++..++.|..|+...+.. ..... .......+..+++.+ ++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g- 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN- 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----EEEecccccccccccccccchhccccCCCCceEEEcCCCC-
Confidence 3456788999998788888899999998765320 00000 001123578899987 54
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-----------------CCceEEE
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARLW 234 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~i~ 234 (389)
. |+.+...+.|..+|..++...... .............+++.+.+++++++... ++.|..|
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLA-TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEE-SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEec-ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 4 555555555888887765432221 11000112346778888734455554322 3678888
Q ss_pred eCCCCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCc--eeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 235 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
|.... . +..+.........++++|+++.|+++ +.++.|.+|++.... ....+.. .. . ...++++++|++
T Consensus 171 d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 171 DPSTK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGHF 242 (322)
T ss_dssp ETTTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSCE
T ss_pred eCCCC-E-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCCE
Confidence 87644 2 22222223446789999999866655 566899999987532 1122221 11 1 578999999986
Q ss_pred EEEEec----------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccC
Q 016458 312 LFAGYS----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 312 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
.++... .+.|..+|. .++.+..+..........++++++ .+++++++....+.|.. +++...
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~----~~~~~~ 314 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI----LVYDKK 314 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE----EEC---
T ss_pred EEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE----Eecccc
Confidence 666544 467888886 466666653211111345777777 46666666667788888 877643
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.12 E-value=6.3e-08 Score=76.52 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=130.4
Q ss_pred cceeeeecccccCc--EEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCeeEEEeeCCCc-EEEEEECCCCcEE-EEecC
Q 016458 56 DLVCCRTLQGHAGK--VYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSV-ACGGL 129 (389)
Q Consensus 56 ~~~~~~~l~~h~~~--v~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l-~~~~~ 129 (389)
..+.++++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... .-.++.. ++.| .....
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee
Confidence 34566666 45443 4789998 666666777766 8999999999999988765432 1234443 4444 44456
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCe
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 209 (389)
++.+.+||..+.+ ....+.... ....+++++. .|+.+..++.|.++|..+.+....+........-..+
T Consensus 106 ~~~v~v~D~~t~~-------~~~ti~~~~---eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 106 NGLGFVWNIRNLR-------QVRSFNYDG---EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp SSEEEEEETTTCC-------EEEEEECSS---CCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred CCEEEEEECccCc-------EEEEEECCC---CceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 8899999998754 444444321 1223445664 4555555789999999999888877432101111334
Q ss_pred eEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeee------------ccceEEEEEecCCCEEEEEecC
Q 016458 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------------EGDVNTVKFFPDGNRFGTGSDD 271 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~d 271 (389)
+.+.+. ++.+++..-.++.|.+.|.+++ +.+..+... ....+.|+|+|+++.|++.+..
T Consensus 175 NELe~~--~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 175 NELEWV--DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ceeEEE--CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 567776 5666666657889999999987 666665431 1346899999988888877753
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.12 E-value=3.9e-08 Score=91.05 Aligned_cols=275 Identities=10% Similarity=0.019 Sum_probs=151.9
Q ss_pred EEEEcC-CCCeEEEEecCC-----------cEEEEeCCCCCeeE--EEee-CCCcEEEEEECCCCcEEEEecC-CCcEEE
Q 016458 72 SLDWTS-ERNRIVSASQDG-----------RLIVWNALTSQKTH--AIKL-PCAWVMTCAFSPTGQSVACGGL-DSVCSI 135 (389)
Q Consensus 72 ~~~~~~-~~~~l~~~~~dg-----------~v~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~v 135 (389)
++++.+ ++++++.|+.+. .+.+||..+++-.. .... +.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556667 888888887543 58899988776332 2222 2223345677889999999984 457999
Q ss_pred EeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CC-----CeEEEEeCCCCeeEEEec---CcccCCCC
Q 016458 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWDITTGLRTSVFG---GEFQSGHT 206 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~---~~~~~~~~ 206 (389)
||..+.. +.....+.... .-.+++..+++ ++++.|+ .+ ..+.+||..+......-. ........
T Consensus 270 yd~~t~~-----W~~~~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 270 YDSSSDS-----WIPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEGGGTE-----EEECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ecCcCCc-----eeECCCCCccc-cccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 9987633 11111111111 11234455565 6778887 34 569999998876544310 00000100
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCC---------ceEEEeCCCCCcceeEEeeecc---------ceEEEEEec-CCCEEEE
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDS---------TARLWDTRVASRAVRTFHGHEG---------DVNTVKFFP-DGNRFGT 267 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~---------~i~~~~~~~-~~~~l~~ 267 (389)
. ..+.. ++.+++.++.+| .+..||.... ........+.. .-.++.|.. ++++++.
T Consensus 343 ---~-~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 343 ---Q-GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp ---T-GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred ---c-ceeec-CCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 0 11112 444445554443 5677887765 22222221111 223444543 6778888
Q ss_pred EecCC-----------eEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----------CcEEEEE
Q 016458 268 GSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWD 325 (389)
Q Consensus 268 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d 325 (389)
|+.++ .|.+||..+..-........ . ....-.+++..|++++++.|+.+ ..+.+||
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-Y-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-S-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-C-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 87543 68888887665433220011 1 11112345666899999998754 4689999
Q ss_pred cccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
..+.+-.. +... ......-.+..+.++|+.++.||.
T Consensus 495 p~t~~W~~-~~~~-~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 495 PEQDTFYK-QNPN-SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GGGTEEEE-CCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCceee-cCCC-CCccccccHhhcCCCcEEEecCCC
Confidence 87765332 2111 111122234556789999999885
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.10 E-value=5.2e-07 Score=77.59 Aligned_cols=245 Identities=11% Similarity=0.002 Sum_probs=151.6
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
.-.|.+..++ .+|+.+.. ..|+..++........+. ....+..++|++.+..|+ +-...+.|..++++...
T Consensus 78 ~~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----- 149 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----- 149 (386)
T ss_dssp SSCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-----
T ss_pred CCeECCcccc-ceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-----
Confidence 3456665553 35544443 568888887665544433 345688999997655554 54567889999987632
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
..............+++.+.+..++++-...+.|.+.++........+ .........+++.|.++.++++-..
T Consensus 150 --~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-----~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 150 --VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp --EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred --cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence 122222222345678888766566777777889999998765544443 2333567899999866666666555
Q ss_pred C-CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEe
Q 016458 228 D-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 228 d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
. +.|..+++... .........-.....|+++|++..|+.+ +..+.|..+|+............ ......+++
T Consensus 223 ~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~~~P~giav 296 (386)
T 3v65_B 223 NTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----LPHPFAITV 296 (386)
T ss_dssp SSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-----CSSEEEEEE
T ss_pred CCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-----CCCceEEEE
Confidence 5 77888887643 2222222223457899999866666555 45678999998754332222211 123577888
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceEEEee
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (389)
..+.++++-...+.|..+|..+++....+
T Consensus 297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 297 -FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 34445555556778988986666655555
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.07 E-value=8.2e-08 Score=86.87 Aligned_cols=255 Identities=13% Similarity=0.127 Sum_probs=151.7
Q ss_pred EEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEEE-EEECCCCcEEEEec------CCCcEEEEeCCCCCCCCCCCcc
Q 016458 82 IVSASQDGRLIVWNALTSQKTHAIKLPCA----WVMT-CAFSPTGQSVACGG------LDSVCSIFNLNSPTDKDGNLPV 150 (389)
Q Consensus 82 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~ 150 (389)
|+.++.|+.|..+|..+|+.+........ .+.+ -.. .++ .+++++ .+|.|+-+|..+++.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~------- 194 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQ------- 194 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCE-------
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcE-------
Confidence 88888899999999999999887664321 1111 011 134 455554 378999999988652
Q ss_pred eeeeccc-------------------------------------ccce-EEEEEeeCCCcEEEEeeCC------------
Q 016458 151 SRMLSGH-------------------------------------KGYV-SCCQYVPDEDTHLITSSGD------------ 180 (389)
Q Consensus 151 ~~~~~~~-------------------------------------~~~v-~~~~~~~~~~~~l~~~~~d------------ 180 (389)
.-.+... ...+ ..+++.+.. .+++.+..+
T Consensus 195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd 273 (599)
T 1w6s_A 195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGD 273 (599)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCC
Confidence 1111100 0001 134555555 456655544
Q ss_pred ----CeEEEEeCCCCeeEEEecCcccCC-----CCCCeeEEEeeCCCC---cEEEEeeCCCceEEEeCCCCCcceeEEee
Q 016458 181 ----QTCVLWDITTGLRTSVFGGEFQSG-----HTADVLSVSISGSNS---RMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 181 ----g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
+.|..+|..+++....+....... ...++. +.....++ ..++.++.+|.++++|.+++ +.+.....
T Consensus 274 ~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~ 351 (599)
T 1w6s_A 274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKL 351 (599)
T ss_dssp CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEES
T ss_pred ccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccc
Confidence 489999999999988874321000 011121 22220144 56778889999999999887 44433321
Q ss_pred ec-------------cce--------------------------EEEEEecCCCEEEEEe--------------------
Q 016458 249 HE-------------GDV--------------------------NTVKFFPDGNRFGTGS-------------------- 269 (389)
Q Consensus 249 ~~-------------~~i--------------------------~~~~~~~~~~~l~~~~-------------------- 269 (389)
.. .++ ..++++|+..++++..
T Consensus 352 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~ 431 (599)
T 1w6s_A 352 DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFF 431 (599)
T ss_dssp STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcce
Confidence 10 011 2356777666555431
Q ss_pred -------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce
Q 016458 270 -------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (389)
Q Consensus 270 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (389)
.+|.|..||+.+++.+........ ...-.+...+..++.++.||.++.||..+++
T Consensus 432 ~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 432 VGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 347899999999988877654321 1111122356788889999999999999999
Q ss_pred EEEeecCcCCCCCCCeeEEEECCCCCe
Q 016458 331 VVLNLGSLQNSHEGRITCLGLSADGSA 357 (389)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ 357 (389)
.+..+.........+ +.+..+|+.
T Consensus 506 ~lW~~~l~~g~~~~P---~~y~~~G~q 529 (599)
T 1w6s_A 506 LLWKFKIPSGAIGYP---MTYTHKGTQ 529 (599)
T ss_dssp EEEEEECSSCCCSCC---EEEEETTEE
T ss_pred EEEEeeCCCCcEecc---EEEEeCCEE
Confidence 999885322222223 445557763
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.07 E-value=1.9e-06 Score=73.06 Aligned_cols=238 Identities=6% Similarity=-0.034 Sum_probs=143.7
Q ss_pred EEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe
Q 016458 113 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (389)
Q Consensus 113 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 192 (389)
+|.+..++. +|+.+. ...|+..++.... ...... ....+..++|.+.++.++++-...+.|..+++....
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-------~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSE-------YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSCC-------EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCCe-------eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 344444433 333332 3457777776522 222222 234578899998765666666678899999998765
Q ss_pred eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cC
Q 016458 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DD 271 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 271 (389)
..... .........+++.+.+++++++-...+.|.+.++... .........-.....++++|.+..|+... ..
T Consensus 107 ~~~~~-----~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 107 VEEVV-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp CEEEE-----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred ceEEE-----eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence 44443 2223446788888766777777777789999998754 22222222334578999999665555444 44
Q ss_pred -CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEE
Q 016458 272 -GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (389)
Q Consensus 272 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 349 (389)
+.|..+++..... ..+.. ........++++|++..|+.+. ..+.|..+|+........+ .........+
T Consensus 181 ~~~I~r~~~dG~~~-~~~~~----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~----~~~~~~P~gi 251 (349)
T 3v64_C 181 TPRIEASSMDGSGR-RIIAD----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI----SQGLPHPFAI 251 (349)
T ss_dssp SCEEEEEETTSCSC-EESCC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSSEEEE
T ss_pred CCEEEEEeCCCCCc-EEEEE----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE----eCCCCCceEE
Confidence 7899998764332 22211 1122468999998777776665 4567999998754333223 2223456778
Q ss_pred EECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 350 GLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 350 ~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
++. .+.++++-...+.|.. .+..+|+
T Consensus 252 av~-~~~ly~td~~~~~V~~----~~~~~G~ 277 (349)
T 3v64_C 252 TVF-EDSLYWTDWHTKSINS----ANKFTGK 277 (349)
T ss_dssp EEE-TTEEEEEETTTTEEEE----EETTTCC
T ss_pred EEE-CCEEEEecCCCCeEEE----EEccCCC
Confidence 883 4445555555667766 6644554
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.07 E-value=1.8e-07 Score=73.92 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=124.2
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
....+.|+ ++.++.+.+.+|.|+++|+.+++ ..... -..........++++.++++.-.++.+.+||..+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence 34678887 46677778888999999999866 22332 1122333223344556777777899999999999
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----cceEEEEEecCCCEE
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRF 265 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l 265 (389)
.+.+..+.. ...-..++. ++..|+.+..++.|.++|..+. +.+..+.-.. ..++.+.|. +|...
T Consensus 126 l~~~~ti~~------~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 126 PQRERTTRY------SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp TEEEEEEEC------SSCCCCEEE---ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CcEEEEEeC------CCceeEEec---CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 999999843 122244443 3445555556889999999887 5565554322 134667776 77655
Q ss_pred EEEecCCeEEEEECCCCceeeEeeccC--------CCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 266 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 266 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
+..-.+..|.+.|..+++.+..+.... ......-.+.++++|+++.|++.+.
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 555568899999999999888876531 1112234799999998776665544
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.3e-06 Score=81.10 Aligned_cols=292 Identities=11% Similarity=0.030 Sum_probs=175.1
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe---------eCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---------LPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~ 137 (389)
...|.++...++|. |..|+.++-|..++..+........ .....|.++...+++.+. .|+.++-+..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEE
Confidence 45799999998885 5567766678899877654332211 123569999988877644 555555688888
Q ss_pred CCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
..+..... ...........|.++...+++ .|..|+.++-|..+|..++....... . ......|.++...+
T Consensus 390 ~~~~~~~~----~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~- 459 (781)
T 3v9f_A 390 NGKRVAIY----NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDK- 459 (781)
T ss_dssp TTEEEEEC----C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECT-
T ss_pred CCCCeEEE----ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECC-
Confidence 76422100 000001234568888877665 46667777789999988775443221 0 12345788888776
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeee-----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 292 (389)
++.+ ..|+. +-|..||..+. ......... ...|.++...++|.+.+ |+.++-|..||..+++ ...+....
T Consensus 460 ~g~l-wigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~~~~~~~ 534 (781)
T 3v9f_A 460 NKKI-WIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL-VRKFNQYE 534 (781)
T ss_dssp TSEE-EEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE-EEEECTTT
T ss_pred CCCE-EEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe-EEEccCCC
Confidence 5554 44555 56889998754 222211111 35688999988887554 5554457788876653 33332211
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeec
Q 016458 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLG 372 (389)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~ 372 (389)
......|.++...++|.+.++. .+|.+..||..+++.. .+.....-....|.++..+++|.+.++ +.+| |..
T Consensus 535 -~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~--- 606 (781)
T 3v9f_A 535 -GFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISC--- 606 (781)
T ss_dssp -TCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEE---
T ss_pred -CCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEE---
Confidence 1123358899998888865544 4665588988765432 222111122346889999988875554 4556 444
Q ss_pred ceecccCcccCc
Q 016458 373 FWRVQEGALSPW 384 (389)
Q Consensus 373 ~W~~~~~~~~~~ 384 (389)
++..+++...+
T Consensus 607 -~~~~~~~~~~~ 617 (781)
T 3v9f_A 607 -YITSKKCFYTY 617 (781)
T ss_dssp -EETTTTEEEEE
T ss_pred -EECCCCceEEe
Confidence 66666555443
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.02 E-value=5.4e-06 Score=69.19 Aligned_cols=239 Identities=10% Similarity=0.002 Sum_probs=144.3
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+|+.+.. ..|+..|+.+.+....+. ....+..++|++.+..|+ +-..++.|..+++...... . .....+...-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--~-~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-SYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--c-ccEEEEeCCCC
Confidence 4444444 468999988776555443 345688999998665554 4455788999998752100 0 01112222223
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-CceEEEeCCC
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRV 238 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~ 238 (389)
....+++.+.+++++++-...+.|.++++......... .........+++.|.++.++++.... +.|..+++..
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEE-----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 45788888765566667677899999998765443333 22334678999998566555554433 6788888763
Q ss_pred CCcceeEE-eeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 239 ASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 239 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
. ....+ ...-.....++++|++..|+.+. ..+.|..+|+... ....+.... ........+++. .+.++++-.
T Consensus 153 ~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~--~~~~~P~giav~-~~~ly~~d~ 226 (316)
T 1ijq_A 153 V--DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDE--KRLAHPFSLAVF-EDKVFWTDI 226 (316)
T ss_dssp C--CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECT--TTTSSEEEEEEE-TTEEEEEET
T ss_pred C--CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecC--CccCCcEEEEEE-CCEEEEEEC
Confidence 3 22222 22234578999999777666554 5678999998743 333332211 111235677774 344555555
Q ss_pred cCCcEEEEEcccceEEEee
Q 016458 317 SNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~ 335 (389)
..+.|..++..+++....+
T Consensus 227 ~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcceEEE
Confidence 6778999997766655444
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.02 E-value=4.5e-06 Score=69.68 Aligned_cols=224 Identities=8% Similarity=0.000 Sum_probs=136.7
Q ss_pred CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----CeeEEEecCcccCCCC
Q 016458 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHT 206 (389)
Q Consensus 131 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~ 206 (389)
..|+..++.... ...... ....+..+.|.+.++.++++-..++.|..+++.. ......+ ....
T Consensus 10 ~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-----~~~~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRDI 76 (316)
T ss_dssp SSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSSC
T ss_pred CeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-----eCCC
Confidence 568888887643 222222 2345788999987656666767789999999876 2222222 1222
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-C-CeEEEEECCCCce
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTGHQ 284 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~ 284 (389)
.....+++.+.+++++++-...+.|.++|+... ...............++++|.+..|+.+.. . +.|..+++.. ..
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 346788888756677777677889999998743 222222223346789999996666655543 3 6888888764 33
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
...+... .......+++++++..|+.+. ..+.|..+|+........... .........+++. .+.++++-..
T Consensus 155 ~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~~ 227 (316)
T 1ijq_A 155 IYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-EDKVFWTDII 227 (316)
T ss_dssp EEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEETT
T ss_pred eEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec--CCccCCcEEEEEE-CCEEEEEECC
Confidence 3333211 122478999999877776665 456899999874322221110 1123346778885 3555555556
Q ss_pred CCeeEEeecceecccCc
Q 016458 364 DTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 364 dg~i~i~~~~W~~~~~~ 380 (389)
.+.|.. .+..+|+
T Consensus 228 ~~~V~~----~~~~~g~ 240 (316)
T 1ijq_A 228 NEAIFS----ANRLTGS 240 (316)
T ss_dssp TTEEEE----EETTTCC
T ss_pred CCeEEE----EeCCCCc
Confidence 677877 7766664
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.00 E-value=8.7e-07 Score=80.33 Aligned_cols=261 Identities=14% Similarity=0.127 Sum_probs=153.4
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCC----cEE---EEEEC-CCCc-EEEEec------CCCcEEEEeCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA----WVM---TCAFS-PTGQ-SVACGG------LDSVCSIFNLNSPTD 143 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~-~l~~~~------~dg~i~vw~~~~~~~ 143 (389)
+..++.++.|+.|..+|..+|+.+........ .+. .+.=. .+++ .+++++ .++.|.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 34678888899999999999999887765431 111 11111 1232 566654 378899999887652
Q ss_pred CCCCCcceeeeccc-----------------------------------------ccceEEEEEeeCCCcEEEEeeC---
Q 016458 144 KDGNLPVSRMLSGH-----------------------------------------KGYVSCCQYVPDEDTHLITSSG--- 179 (389)
Q Consensus 144 ~~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~~l~~~~~--- 179 (389)
. -..... ...-..+++.|.. .+++.+..
T Consensus 197 ~-------W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~ 268 (582)
T 1flg_A 197 I-------WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPG 268 (582)
T ss_dssp E-------EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBS
T ss_pred E-------eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCC
Confidence 1 000000 0000134566665 35554442
Q ss_pred -----------------C----CeEEEEeCCCCeeEEEecCcccC-----CCCCCeeEEEeeCCCC---cEEEEeeCCCc
Q 016458 180 -----------------D----QTCVLWDITTGLRTSVFGGEFQS-----GHTADVLSVSISGSNS---RMFVSGSCDST 230 (389)
Q Consensus 180 -----------------d----g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~~l~~~~~dg~ 230 (389)
| +.|..+|..+++....+...... ....++. +.....++ ..++.++.+|.
T Consensus 269 ~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~ 347 (582)
T 1flg_A 269 PWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF 347 (582)
T ss_dssp SSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE
T ss_pred cccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce
Confidence 2 68999999999999887432100 0011221 22210144 47888999999
Q ss_pred eEEEeCCCCCcceeEEeeec-------------cc--------------------------------eEEEEEecCCCEE
Q 016458 231 ARLWDTRVASRAVRTFHGHE-------------GD--------------------------------VNTVKFFPDGNRF 265 (389)
Q Consensus 231 i~i~d~~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~~~~~~~l 265 (389)
++++|.+++ +.+....... .+ -..++++|+..++
T Consensus 348 l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 348 FYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred EEEEECCCC-CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999999887 4443332211 00 0134666655555
Q ss_pred EEEe---------------------------------cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 266 GTGS---------------------------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 266 ~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
++.. .+|.|..||+.+++.+........ +..-.....+.++
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagglv 500 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLV 500 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC------CcccceEeCCCEE
Confidence 5432 268899999999998877654321 1111122246788
Q ss_pred EEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeE
Q 016458 313 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (389)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 358 (389)
+.++.||.++.||..+++.+..+........ .-+.|..+|+..
T Consensus 501 f~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a---~P~~y~~~G~qY 543 (582)
T 1flg_A 501 FTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPITWEQDGEQY 543 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEEEEETTEEE
T ss_pred EEECCCCcEEEEECCCCCEEEEecCCCCccc---CceEEEECCEEE
Confidence 8899999999999999999998853211111 225565677643
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=2.2e-06 Score=67.22 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=123.5
Q ss_pred CcEEEEEECCCCcEEEEecCC--CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe
Q 016458 110 AWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 187 (389)
.....+.|++ +.++.+.+.+ ..|+.+|+.+++ ......-. ...........++.++...-.++.+.+||
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-------v~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-------ILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-------EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-------EEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 4466888886 5555666664 489999999865 33333222 12222222333456677777899999999
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec-----cceEEEEEecCC
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDG 262 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~ 262 (389)
..+.+.+..+... ..-..++. +.+.+++ +..++.|.++|..+. +.+..+.-.. ..++.+.+. +|
T Consensus 92 ~~tl~~~~ti~~~------~~Gwglt~--dg~~L~v-Sdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 92 LATLTPRARFRYP------GEGWALTS--DDSHLYM-SDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp TTTTEEEEEEECS------SCCCEEEE--CSSCEEE-ECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CCcCcEEEEEeCC------CCceEEee--CCCEEEE-ECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CC
Confidence 9999999998431 22244543 2444444 455889999999887 5555554322 235566765 66
Q ss_pred CEEEEEecCCeEEEEECCCCceeeEeeccCC--------CCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
...+..-.+..|.+.|..+++.+..+..... .....-.+.++++|+++.|++.+..
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 6555555688999999999999888765421 1122347899999988877766543
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.99 E-value=3.1e-06 Score=72.81 Aligned_cols=237 Identities=6% Similarity=-0.042 Sum_probs=145.3
Q ss_pred EEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee
Q 016458 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (389)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 193 (389)
|.+..+. .+|+.+. ...|+.+++.... ...... ....+..++|.+.+..++++-...+.|..+++.....
T Consensus 81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~~-------~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 81 CKALGPE-PVLLFAN-RIDIRQVLPHRSE-------YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEECSSC-CEEEEEC-BSCEEEECTTSCC-------CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred ECCcccc-ceeEeec-CccceeeccCCCc-------EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 4444443 3343333 3567888876532 222222 2345788999987656666767788999999987665
Q ss_pred EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cC-
Q 016458 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DD- 271 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d- 271 (389)
...+ .........+++.+..++++++-...+.|.+.++... .....+...-.....++++|.+..|+... ..
T Consensus 151 ~~~~-----~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 151 EEVV-----STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp EEEE-----CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred EEEE-----eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 4444 2223345678888756777777777788999888744 22222333335678999999766665554 34
Q ss_pred CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 272 g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (389)
+.|..+++............ ......++++|++..|+.+. ..+.|..+|+........+ .........|+
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~-----~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~----~~~~~~P~gia 295 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTH-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI----SQGLPHPFAIT 295 (386)
T ss_dssp CEEEEEETTSCSCEEEECSS-----CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE----CSSCSSEEEEE
T ss_pred CEEEEEeCCCCCcEEEEECC-----CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE----ECCCCCceEEE
Confidence 68988887654332222111 12368999998777666664 4567999998654333333 22234567888
Q ss_pred ECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 351 LSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
+. .+.++++-...+.|.. .+..+|+
T Consensus 296 v~-~~~ly~td~~~~~V~~----~~~~~G~ 320 (386)
T 3v65_B 296 VF-EDSLYWTDWHTKSINS----ANKFTGK 320 (386)
T ss_dssp EE-TTEEEEEETTTTEEEE----EETTTCC
T ss_pred EE-CCEEEEeeCCCCeEEE----EECCCCc
Confidence 83 4455555556677777 6654554
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.98 E-value=5.3e-06 Score=66.00 Aligned_cols=211 Identities=11% Similarity=0.104 Sum_probs=137.9
Q ss_pred eecccccCcEEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEEEecCCCcEEEEeC
Q 016458 61 RTLQGHAGKVYSLDWTSERNRIV-SASQDGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (389)
Q Consensus 61 ~~l~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~ 138 (389)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+... ....-.+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46777778899999999876555 56778889999987 8888777543 245788899999987777667788999988
Q ss_pred CCCCCCCCCCcceeee------cccccceEEEEEeeCCCcEEEEeeCCC-eEEEEeC-CCCeeEEEecCc--ccCCCCCC
Q 016458 139 NSPTDKDGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDI-TTGLRTSVFGGE--FQSGHTAD 208 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~-~~~~~~~~~~~~--~~~~~~~~ 208 (389)
..... ....... ...+.....++|.|.++.++++.-.+. .|..|+- ............ ........
T Consensus 99 ~~~~~----i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 99 TPNSE----VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp CTTCC----EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred CCCCe----eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 76431 0111111 123455789999998755444444443 4444541 011111211100 00123456
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeec---------cceEEEEEecCCCEEEEEecCCeEEEEEC
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------GDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 279 (389)
+.+++++|..+++++....+..|..+|... +.+..+.-.. .....|+|.++|+ |+..+..+.++.|.-
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 799999998888889888899999999773 3444443221 2568899999998 444567777777753
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.97 E-value=1.9e-06 Score=68.56 Aligned_cols=208 Identities=10% Similarity=0.115 Sum_probs=132.8
Q ss_pred eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (389)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (389)
.+.+-...+..++|+|+++.++++...++.|...|.. +.....++. ........+++.+ ++.++++.-.++.+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 4445556899999999876777778889999999998 777776632 2235678888887 666666665678899
Q ss_pred EEeCCCCCc--ceeEEe------eeccceEEEEEecCCCEEEEEecCCeEEEEECCC---CceeeEeec--cCCCCCCCC
Q 016458 233 LWDTRVASR--AVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ--QHGENEIPH 299 (389)
Q Consensus 233 i~d~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~--~~~~~~~~~ 299 (389)
++++..... .+.... ..+.....++|+|.++.|+++.......+|.+.. ...+..... .........
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998776532 112221 1234468999999988888777655555555541 111222111 000111224
Q ss_pred eeEEEeCCCCC-EEEEEecCCcEEEEEcccceEEEeecCcCCCC------CCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 300 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 300 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+.+++++|... +++.+..+..+.++|.. ++.+..+... .+. -.....|+|+++|++.+ .+.-+.+++
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~-~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~ 248 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT-KGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYR 248 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS-TTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC-CccCCcccccCCCCeeEECCCCCEEE-EcCCceEEE
Confidence 78999999654 55556667788899965 5555544321 221 13678999999998544 466665544
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.96 E-value=1.3e-05 Score=69.21 Aligned_cols=240 Identities=10% Similarity=-0.013 Sum_probs=147.9
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeeccccc
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ..++.|+.+++..... .............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~---~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC---CCcceEEEeCCCC
Confidence 555444 3679999987765544433 44568899999866655554 5578888888865220 0011222232344
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-CCceEEEeCCC
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRV 238 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 238 (389)
....+++.+.+.+++++-...+.|.+.++........+ .........+++.|..+.++++-.. .+.|...++..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-----~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 57788898865577777777899999999876555444 2334457899999855555555423 47888888874
Q ss_pred CCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec
Q 016458 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
. .........-.....|++++++..|+.+. ..+.|..+|+..... ..+.... ........+++. .+.++.+-..
T Consensus 235 ~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~--~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 235 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp C-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECS--STTSSEEEEEEE-TTEEEEEESS
T ss_pred C-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCC--CCCCCCEEEEEe-CCEEEEecCC
Confidence 3 22222222234678999998777776654 567899999875433 3332211 111235677773 3344445556
Q ss_pred CCcEEEEEcccceEEEee
Q 016458 318 NGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~ 335 (389)
.+.|..+|..+++....+
T Consensus 310 ~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SCSEEEEESSSCCCCEEE
T ss_pred CCeEEEEEcCCCCceEEE
Confidence 678999997777665555
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.1e-06 Score=76.72 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=142.3
Q ss_pred cEEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecC-CC----cEEEEeCCCCC
Q 016458 69 KVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DS----VCSIFNLNSPT 142 (389)
Q Consensus 69 ~v~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~vw~~~~~~ 142 (389)
....|+++| ++..|..+...+.|+.+|...+.... +.........++|+++++.|+++.. ++ .+.+++....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~- 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG- 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-
Confidence 467899998 45566666655889999987655443 3334566899999999996666654 22 2333443221
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-E
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 221 (389)
......+. .......+++.|++..++++-..++.|..++...+....... .........++++| +++ +
T Consensus 216 -----~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----~~~~~~P~gia~~p-dG~~l 284 (430)
T 3tc9_A 216 -----FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----IQDSGWEFHIQFHP-SGNYA 284 (430)
T ss_dssp -----SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----CSSSSCCEEEEECT-TSSEE
T ss_pred -----eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----cCCCCcceeEEEcC-CCCEE
Confidence 11111221 123456788999444666666678899999998776533321 12224577899999 666 5
Q ss_pred EEEeeCCCceEEEeCCCCCcc---eeEEeee---------------ccceE-EEEEe--------cCCCEEEEEecCCeE
Q 016458 222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVN-TVKFF--------PDGNRFGTGSDDGTC 274 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i 274 (389)
+++-...+.|..++....... ...+.+. -.... .++.. +++.+.++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 666666788999876532111 1222211 01123 45553 345666666677889
Q ss_pred EEEECCCCceeeEeecc----CC--------CCCCCCeeEEEeCCC-CCEEEEEecCCcEEEEEcc
Q 016458 275 RLFDIRTGHQLQVYYQQ----HG--------ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~----~~--------~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 327 (389)
+.++ .++......... .+ .........++++|+ +.++++-..++.|+.++++
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9998 445433322210 00 011224788999985 5555554456678877653
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.91 E-value=1.3e-05 Score=69.12 Aligned_cols=232 Identities=9% Similarity=-0.022 Sum_probs=141.9
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEec
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFG 198 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~ 198 (389)
+|+.+. ...|+..++.... ... +......+..++|.+.++.++++-...+.|+.+++... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~-------~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~- 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI- 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS-------CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-
T ss_pred eeEEec-cceeEEEccCCcc-------eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-
Confidence 344333 4678888887633 122 22334567899999876566666667889999998752 222333
Q ss_pred CcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec--CCeEEE
Q 016458 199 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD--DGTCRL 276 (389)
Q Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i 276 (389)
.........+++.+..++++++-...+.|.+.++... .....+.........|+++|.+.+|+.... .+.|..
T Consensus 155 ----~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 155 ----SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred ----eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence 2234567888998766777777777889999998754 222233333345789999996666665542 478999
Q ss_pred EECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCC
Q 016458 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 277 ~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
.++........... .......+++++++..|+.+.. .+.|..+|+........... ........+|++. .+
T Consensus 230 ~~~dG~~~~~~~~~-----~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~l~~P~gl~v~-~~ 301 (400)
T 3p5b_L 230 GGLNGVDIYSLVTE-----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVF-ED 301 (400)
T ss_dssp EETTSCSCEEEECS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC--SSTTSSEEEEEEE-TT
T ss_pred EeCCCCccEEEEEC-----CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC--CCCCCCCEEEEEe-CC
Confidence 99875433322221 1124789999998887777654 56899999865433322211 1223345677774 33
Q ss_pred CeEEeeeCCCeeEEeecceecccCcc
Q 016458 356 SALCTGSWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 356 ~~l~~~~~dg~i~i~~~~W~~~~~~~ 381 (389)
.++++-...+.|.. ++..+|+.
T Consensus 302 ~lywtd~~~~~V~~----~~~~~G~~ 323 (400)
T 3p5b_L 302 KVFWTDIINEAIFS----ANRLTGSD 323 (400)
T ss_dssp EEEEEESSSCSEEE----EESSSCCC
T ss_pred EEEEecCCCCeEEE----EEcCCCCc
Confidence 45555555677777 77556643
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.88 E-value=1e-05 Score=67.39 Aligned_cols=235 Identities=8% Similarity=-0.015 Sum_probs=141.2
Q ss_pred eEEEEecCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 81 RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+|+.+. ...|+..++..... ...+......+..++|++.+..| .+-...+.|..+++..... ........-
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCC
Confidence 444443 35789999877642 21222222357789999865544 4555678899998876421 011111222
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR 237 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 237 (389)
.....+++.+.+..++++-...+.|.++++......... .........+++.|..+.++++-. ..+.|...++.
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 345678888766567777777889999998765443333 233456789999985555555432 35778888876
Q ss_pred CCCcceeEE-eeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 238 VASRAVRTF-HGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 238 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
.. ....+ ...-...+.++++|++..|+.+ +..+.|..+|+.... ...+... .......+++.. +.++.+-
T Consensus 154 G~--~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~----~~~~P~glav~~-~~lywtd 225 (318)
T 3sov_A 154 GS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKG----SLPHPFALTLFE-DILYWTD 225 (318)
T ss_dssp SC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----CCSCEEEEEEET-TEEEEEE
T ss_pred CC--CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecC----CCCCceEEEEeC-CEEEEEe
Confidence 33 22222 2223456899999976666555 456889999987433 3333221 112356777753 3444455
Q ss_pred ecCCcEEEEEcccceEEEee
Q 016458 316 YSNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~ 335 (389)
...+.|..++..+++....+
T Consensus 226 ~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 226 WSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTTEEEEEETTTCCSCEEE
T ss_pred cCCCeEEEEECCCCCceEEE
Confidence 56678999998777654444
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.88 E-value=3.8e-06 Score=73.25 Aligned_cols=245 Identities=12% Similarity=0.060 Sum_probs=141.8
Q ss_pred cEEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCC---C-cEEEEeCCCCC
Q 016458 69 KVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---S-VCSIFNLNSPT 142 (389)
Q Consensus 69 ~v~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~vw~~~~~~ 142 (389)
....|+|+|+ ...|..+...+.|+.+|..++..... .........++++++++++++...+ . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4678999985 44555555448899999877665443 3344568999999999944443321 1 13333322111
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc-E
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR-M 221 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 221 (389)
.....+. .-.....+++.|++..++++-..++.|+.+|..++.....+.. .........++++| +++ +
T Consensus 219 ------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~---~~~~~~~~~ia~dp-dG~~L 287 (433)
T 4hw6_A 219 ------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM---MDTKGSNFHIVWHP-TGDWA 287 (433)
T ss_dssp ------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE---CSCCSSCEEEEECT-TSSEE
T ss_pred ------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec---cCCCCCcccEEEeC-CCCEE
Confidence 0011111 2234566788884436666666788999999987765222211 11222334799999 555 5
Q ss_pred EEEeeCCCceEEEeCCCCCcc---eeEEeee---------------ccceEEEEE---------ecCCCEEEEEecCCeE
Q 016458 222 FVSGSCDSTARLWDTRVASRA---VRTFHGH---------------EGDVNTVKF---------FPDGNRFGTGSDDGTC 274 (389)
Q Consensus 222 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~~~~~---------~~~~~~l~~~~~dg~i 274 (389)
+++-...+.|+.++....... ...+.+. -.....+++ .+++.++++-...+.|
T Consensus 288 Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 288 YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 566566788999886532111 1122221 123567999 6777777777778899
Q ss_pred EEEECCCCceeeEeeccCC-------------CCCCCCeeEEEeC-CCCCEEEEEecCCcEEEEEcc
Q 016458 275 RLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFS-ISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 275 ~i~d~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~ 327 (389)
+.++. ++. +..+..... .........++++ ++|.++++=..++.|+.++++
T Consensus 368 ~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 453 333322110 0112346788888 556555555556677777653
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.88 E-value=2.5e-06 Score=80.20 Aligned_cols=196 Identities=10% Similarity=0.045 Sum_probs=111.4
Q ss_pred cEEEEEEc-CCCCeEEEEec-CC----cEEEEeCCCC-CeeE-EEeeCCCcEEEEEECCCCcEEEEecCC-----CcEEE
Q 016458 69 KVYSLDWT-SERNRIVSASQ-DG----RLIVWNALTS-QKTH-AIKLPCAWVMTCAFSPTGQSVACGGLD-----SVCSI 135 (389)
Q Consensus 69 ~v~~~~~~-~~~~~l~~~~~-dg----~v~iw~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v 135 (389)
.+...+|| |||++||-+.. +| .|+++|+.++ +.+. .+.. ....++|+|+++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68889999 99998885443 22 5999999988 6321 1111 13467899999888777654 25777
Q ss_pred EeCCCCCCCCCCCcceeeec-ccccceEEEEEeeCCCcEEEEee--CCCeEEEEeCCCCe-eE--EEecCcccCCCCCCe
Q 016458 136 FNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGL-RT--SVFGGEFQSGHTADV 209 (389)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~v 209 (389)
+++.++... ....+. ........+.|+|++..++++.. ....|.++|+.++. .. ..+. .......
T Consensus 252 ~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~ 322 (751)
T 2xe4_A 252 HVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----PREKGVR 322 (751)
T ss_dssp EETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----CCCTTCC
T ss_pred EECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----cCCCCce
Confidence 887654310 111211 22234567899999854444443 24568888988752 11 2221 2334455
Q ss_pred eEEEeeCCCCcEEEEeeCC--C--ceEEEeCCCCCcceeE-Eeeecc--ceEEEEEecCCCEEEEEecCCe--EEEEEC
Q 016458 210 LSVSISGSNSRMFVSGSCD--S--TARLWDTRVASRAVRT-FHGHEG--DVNTVKFFPDGNRFGTGSDDGT--CRLFDI 279 (389)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~ 279 (389)
.++.|+. ++.+++....+ + .|..+|+.+. ..... +..+.. .+..+.+. .+.++++...+|. |.++++
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 6666554 55555555544 3 5666676542 22222 333433 34445554 3334556666775 555665
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.81 E-value=2e-05 Score=65.64 Aligned_cols=226 Identities=5% Similarity=-0.065 Sum_probs=140.1
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE-EEecCcccCCCCCC
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQSGHTAD 208 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 208 (389)
...|+..+++.... ....... ....+..+.|.+.++.++.+-...+.|..+++...... ..+ ......
T Consensus 12 ~~~I~~i~l~~~~~-----~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-----~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKE-----NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-----VSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTS-----CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-----EECCSC
T ss_pred cCeEEEEECCCCce-----EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-----cCCCCC
Confidence 46788888876321 0111122 22456789999876566677677889999998776321 112 112234
Q ss_pred eeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCCceee
Q 016458 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 286 (389)
...+++.+..++++++-...+.|.++++... ...............+++.|.+..|+... ..+.|..+++.... ..
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~ 158 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF 158 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence 6778888757777777777789999998744 22222223345678999999766666555 35789888876433 22
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.+... .....+.+++++++..|+.+. ..+.|..+|+......... .........+++.. +.++++-...+
T Consensus 159 ~~~~~----~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~----~~~~~~P~glav~~-~~lywtd~~~~ 229 (318)
T 3sov_A 159 IIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV----KGSLPHPFALTLFE-DILYWTDWSTH 229 (318)
T ss_dssp EEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSCCSCEEEEEEET-TEEEEEETTTT
T ss_pred EEEEC----CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe----cCCCCCceEEEEeC-CEEEEEecCCC
Confidence 22211 112368999999777776664 4578999998643332222 22334567787754 34555555567
Q ss_pred eeEEeecceecccCcc
Q 016458 366 NLKVNLGFWRVQEGAL 381 (389)
Q Consensus 366 ~i~i~~~~W~~~~~~~ 381 (389)
.|.. .+..+|+.
T Consensus 230 ~V~~----~~~~~G~~ 241 (318)
T 3sov_A 230 SILA----CNKYTGEG 241 (318)
T ss_dssp EEEE----EETTTCCS
T ss_pred eEEE----EECCCCCc
Confidence 7877 77766654
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=2.5e-06 Score=74.37 Aligned_cols=243 Identities=9% Similarity=0.064 Sum_probs=136.3
Q ss_pred cEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC----eEEE
Q 016458 111 WVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL 185 (389)
Q Consensus 111 ~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i 185 (389)
....++++| ++..|+++...+.|+.+|+.... ...+.........+++++++..++++...++ .+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 357889998 45666666555788889887633 2222234456788999999843455444322 3444
Q ss_pred EeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee-eccceEEEEEecCCC
Q 016458 186 WDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGN 263 (389)
Q Consensus 186 wd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 263 (389)
++...... ...+. .......++++|.++.++++-..++.|..++.... ........ .......++|+|+++
T Consensus 210 ~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 210 LTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECTTSS
T ss_pred EeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcCCCC
Confidence 44332211 11221 12345678888866777777667889999998754 22111111 123467899999999
Q ss_pred EEE-EEecCCeEEEEECCCC--ce--eeEeeccCCC----------CCCCCee-EEEeC--------CCCCEEEEEecCC
Q 016458 264 RFG-TGSDDGTCRLFDIRTG--HQ--LQVYYQQHGE----------NEIPHVT-SIAFS--------ISGRLLFAGYSNG 319 (389)
Q Consensus 264 ~l~-~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~----------~~~~~i~-~~~~~--------~~~~~l~~~~~dg 319 (389)
+|+ +-...+.|..++.... .. ...+...... ....... .++.. ++|.+.++-..++
T Consensus 283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~ 362 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH 362 (430)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence 554 4456788999886532 11 1122111000 0011123 45553 3455555555667
Q ss_pred cEEEEEcccceEEEeecCc----C---------CCCCCCeeEEEECCC-CCeEEeeeCCCeeEE
Q 016458 320 DCYVWDTLLAKVVLNLGSL----Q---------NSHEGRITCLGLSAD-GSALCTGSWDTNLKV 369 (389)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~----~---------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 369 (389)
.|+.++ ..+......... . ...-.....|+++++ +.++++-.....|+.
T Consensus 363 ~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 363 CIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp EEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred EEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 888888 355544333210 0 011235789999994 655555555677776
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=1e-06 Score=81.59 Aligned_cols=248 Identities=10% Similarity=0.135 Sum_probs=136.1
Q ss_pred EEEECC-CCcEEEEecCCC-----------cEEEEeCCCCCCCCCCCcceeee-cccccceEEEEEeeCCCcEEEEee-C
Q 016458 114 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G 179 (389)
Q Consensus 114 ~~~~~~-~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~ 179 (389)
.+++.+ +++.++.|+.+. .+.+||..++. +.....+ ..+.....++++..++ .+++.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----EEeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence 456666 888888887543 57889887744 2222222 1223334456677776 6777877 4
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CC-----CceEEEeCCCCCcceeEEeeec-cc
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHGHE-GD 252 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~~-~~ 252 (389)
+..+.+||..+..-...-. ......-.+++..+ ++++++.|+ .+ ..+.+||..+. . ...+.... .+
T Consensus 264 ~~~v~~yd~~t~~W~~~~~----~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~-W~~~~~~~~~p 336 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPD----MQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK-T-WTSLPNAKVNP 336 (656)
T ss_dssp TTCEEEEEGGGTEEEECCC----CSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT-E-EEEETTSCSGG
T ss_pred CCceEEecCcCCceeECCC----CCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC-c-ceeCCCccccc
Confidence 5689999998876544321 11122223455555 778888888 34 46899998754 1 22221000 00
Q ss_pred e----EEEEEecCCCEEEEEecCC---------eEEEEECCCCceeeEeeccCC----CCCCCCeeEEEeC-CCCCEEEE
Q 016458 253 V----NTVKFFPDGNRFGTGSDDG---------TCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA 314 (389)
Q Consensus 253 i----~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~l~~ 314 (389)
. ....+..++..++.++.+| .+..||..+............ ......-.++.|. .++++++.
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 0 0011223455556665544 467888877654332221110 0000112444454 36778888
Q ss_pred EecCC-----------cEEEEEcccceEEEeecCcCCCCCCC-eeEEEECCCCCeEEeeeCC-----------CeeEEee
Q 016458 315 GYSNG-----------DCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWD-----------TNLKVNL 371 (389)
Q Consensus 315 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----------g~i~i~~ 371 (389)
|+.++ .|.+||..+..-...... ..+... -.+++..|++++++.||.+ ..+.+
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~-- 492 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI-- 492 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE--
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE--
Confidence 87543 577888776554332200 111122 2345667899999999865 34667
Q ss_pred cceecccCc
Q 016458 372 GFWRVQEGA 380 (389)
Q Consensus 372 ~~W~~~~~~ 380 (389)
||..+++
T Consensus 493 --ydp~t~~ 499 (656)
T 1k3i_A 493 --YVPEQDT 499 (656)
T ss_dssp --EEGGGTE
T ss_pred --EcCCCCc
Confidence 8887765
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.76 E-value=4.7e-05 Score=71.26 Aligned_cols=248 Identities=10% Similarity=-0.044 Sum_probs=146.9
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEE-EEecCCCcEEEEeCCCCCCCCCCCc
Q 016458 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLP 149 (389)
Q Consensus 71 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~ 149 (389)
+|.+..+. .+|+.+.. ..|+..++........+ .....+..++|++....| ++-...+.|+.+++...... ..
T Consensus 388 ~C~~~~~~-p~Ll~an~-~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~ 461 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SS 461 (791)
T ss_dssp CCEETTSC-CEEEEECB-SSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------
T ss_pred eeeecccc-cccccccc-cceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cc
Confidence 34444332 24444433 56888888765544433 344568899999855544 45555678888888753210 01
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD- 228 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 228 (389)
....+.........|++.+.+.+++++-...+.|.+.++........+ .........|++.|..+.++++-...
T Consensus 462 ~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~-----~~~l~~P~gIaVDp~~g~LYwtD~g~~ 536 (791)
T 3m0c_C 462 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTP 536 (791)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE-----eCCCCCcceEEEecCCCCEEEecCCCC
Confidence 122233233456778898877677777778899999999866554444 23345688999999556555554333
Q ss_pred CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC
Q 016458 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (389)
+.|...++... .....+...-.....|++++.+..|+.+. ..+.|..+++............. .......|++.
T Consensus 537 ~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~---~l~~P~glav~- 611 (791)
T 3m0c_C 537 AKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---RLAHPFSLAVF- 611 (791)
T ss_dssp CEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT---TTSSEEEEEEE-
T ss_pred CeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC---ccCCCCEEEEe-
Confidence 67888888643 22222222334688999998766666554 56789999987544333332211 11124566663
Q ss_pred CCCEEEEEe-cCCcEEEEEcccceEEEee
Q 016458 308 SGRLLFAGY-SNGDCYVWDTLLAKVVLNL 335 (389)
Q Consensus 308 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 335 (389)
+..|+.+. ..+.|...|..+++.+..+
T Consensus 612 -~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 612 -EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 33555544 5577888887666554444
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.76 E-value=5.6e-05 Score=63.38 Aligned_cols=277 Identities=8% Similarity=0.025 Sum_probs=146.8
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee----CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL----PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 142 (389)
...+.+|.|.+++..+++ +.+|.| +...+.++.-..... ....+..+.|.+ +..++ ++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 347999999887777774 456755 333333432222221 234688999976 44444 445564433 222222
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
.+........+.+.+..+.+.+++ ..++ ++.+|.|.. ....+..-.... ......+..+.+.+ ++.++
T Consensus 110 ----tW~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~-S~DgG~tW~~~~----~~~~~~~~~~~~~~-~~~~~ 177 (327)
T 2xbg_A 110 ----SWSQIPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYR-TKDSGKNWQALV----QEAIGVMRNLNRSP-SGEYV 177 (327)
T ss_dssp ----SCEECCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEE-ESSTTSSEEEEE----CSCCCCEEEEEECT-TSCEE
T ss_pred ----CceECccccCCCCCeEEEEEECCC-CEEE-EeCCccEEE-EcCCCCCCEEee----cCCCcceEEEEEcC-CCcEE
Confidence 111111111223456777777765 4444 445565432 122233332221 23445788999988 66666
Q ss_pred EEeeCCCceEE-EeCCCCCcceeEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 223 VSGSCDSTARL-WDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 223 ~~~~~dg~i~i-~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
+++. +|.+.. .|-. + .....+ ......+..+.+.+++..+ .++.+|.+++.+...++.-....... ......+
T Consensus 178 ~~g~-~G~~~~S~d~g-G-~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~-~~~~~~~ 252 (327)
T 2xbg_A 178 AVSS-RGSFYSTWEPG-Q-TAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPL-RRNSVGF 252 (327)
T ss_dssp EEET-TSSEEEEECTT-C-SSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTT-SSCCSCE
T ss_pred EEEC-CCcEEEEeCCC-C-CceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCc-ccCCcce
Confidence 6654 454443 3421 1 222221 2345578889999988755 45567887776433233222221110 0111247
Q ss_pred eEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..+.+.+++..++++ .+|.+ .+....++.-..+... ......+.++.|.+++ .+++++.+|.|.-
T Consensus 253 ~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-KKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp EEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG-TTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred EEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc-CCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 889999887776665 46666 4455555444333210 1234567889887555 4667778897765
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.73 E-value=0.00013 Score=71.25 Aligned_cols=287 Identities=14% Similarity=0.090 Sum_probs=157.8
Q ss_pred cCcEEEEEEcCC------CCeEEEEec-CCcEEEEeCCCCCeeEEEeeCC-CcEEEEEEC--CCCcEEEEecCCCcEEEE
Q 016458 67 AGKVYSLDWTSE------RNRIVSASQ-DGRLIVWNALTSQKTHAIKLPC-AWVMTCAFS--PTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 67 ~~~v~~~~~~~~------~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~~~~~dg~i~vw 136 (389)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....... ....++.+. ....+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 368999996 9999999998877665544322 233444332 244678899999998777
Q ss_pred eCCCCCCCCCCCccee-eecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEE-Ee
Q 016458 137 NLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV-SI 214 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 214 (389)
.++... +.+...+ ..-+ ..++.-..+...+...+++.+ +....+|.-...-....+ ....+..+ .|
T Consensus 633 ~~d~~t---g~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l-------~~~~v~~~~~F 700 (1158)
T 3ei3_A 633 GLNIET---GLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNV-------NLKEVNYMCPL 700 (1158)
T ss_dssp EECTTT---CCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEB-------SSSCCCEEEEE
T ss_pred EEcCCC---CccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEecc-------ChHHhceEecc
Confidence 765421 1111111 1222 234544444444433344433 343444443322111111 11233333 33
Q ss_pred eCCC-CcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecC----------------------
Q 016458 215 SGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------------------- 271 (389)
Q Consensus 215 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------- 271 (389)
+... .+-++..+ ++.++|..+....+....--+-...+..++++|+.+.++.+..+
T Consensus 701 ~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1158)
T 3ei3_A 701 NSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL 779 (1158)
T ss_dssp CCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred CcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence 3211 23344333 45699988765422222222234567889999877765554321
Q ss_pred ---------------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEE---eCCC-CCEEEEEe----
Q 016458 272 ---------------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA---FSIS-GRLLFAGY---- 316 (389)
Q Consensus 272 ---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~---- 316 (389)
+.|++.|-.+.+.+..+.....+ .+.+++ |..+ ..++++|+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE----~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNE----YALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTE----EEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCc----ceEEEEEEEEccCCCEEEEEEeeecC
Confidence 23666776666655554433222 244443 4433 46888887
Q ss_pred ------cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCc
Q 016458 317 ------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 317 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~ 380 (389)
..|.|++|++..++...... ....++|++++-- +|++|++. ...+++ |++...+
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~---~~v~g~v~al~~~-~g~Lla~i--g~~l~v----y~l~~~~ 915 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAE---KEVKGAVYSMVEF-NGKLLASI--NSTVRL----YEWTTEK 915 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEE---EEESSCEEEEEEE-TTEEEEEE--TTEEEE----EEECTTS
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEE---EEcCCcCEEEeee-CCEEEEEc--CCEEEE----EECCCCc
Confidence 35789999987544332222 3456789988743 45444433 478999 9987654
No 286
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.73 E-value=5.5e-05 Score=61.38 Aligned_cols=269 Identities=10% Similarity=0.164 Sum_probs=165.6
Q ss_pred CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (389)
+..|.|.|+.++......+...+ +.-.+|..+.+|.-. ...+.++|+++.. ......- ...|.-=.|.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad---sAIMnP~~~ViALra-g~~LQiFnletK~-------klks~~~-~e~VvfWkWi 115 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKWI 115 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTTE-------EEEEEEC-SSCEEEEEEC
T ss_pred CCEEEEEECCCCCCccccccccc---eeeeCCCccEEEEec-CCeEEEechHHhh-------hhcceec-CCccEEEEec
Confidence 34789999988777644443322 334588888887765 6789999999743 2222222 3466666777
Q ss_pred eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-Eee------CCCceEEEeCCCC
Q 016458 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGS------CDSTARLWDTRVA 239 (389)
Q Consensus 168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~ 239 (389)
... .|+..+ +..|+-|++... .+...+.... .-....|..-..++ +.+.++ +|- -.|.+.+|..+.
T Consensus 116 s~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~-~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er- 189 (365)
T 2xzh_A 116 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR- 189 (365)
T ss_dssp SSS--EEEEEE-SSEEEEEESSTTCCCEEEEECCG-GGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT-
T ss_pred CCC--eEEEEc-CCcEEEEcccCCCCCceeeecch-hcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeecc-
Confidence 653 444444 357999999753 4444543221 12245677777777 444444 332 247889999873
Q ss_pred CcceeEEeeeccceEEEEEecC---CCEEEEEec---CCeEEEEECCCC---c-----eeeEeeccCCCCCCCCeeEEEe
Q 016458 240 SRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSD---DGTCRLFDIRTG---H-----QLQVYYQQHGENEIPHVTSIAF 305 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~-----~~~~~~~~~~~~~~~~i~~~~~ 305 (389)
...+.+.+|......+.+..+ .++++.+.. .+.+++.++... . ....+..+. .....-..++..
T Consensus 190 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp-ea~~DFPVamqv 267 (365)
T 2xzh_A 190 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQI 267 (365)
T ss_dssp -TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT-TCTTCCEEEEEE
T ss_pred -cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc-cccCCceEEEEe
Confidence 455667777655443333211 123443333 268999998543 1 111111111 111223567888
Q ss_pred CCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
++.-..++.-+.-|.|++||+.++..+..- +-...+|..-+-+....=++.....|.|.- -.+++.++.|+
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~n----rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~----v~v~~~~ivpy 338 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS----VCVEEENIIPY 338 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEEGGGTEEEEEETTCEEEE----EEECTTTHHHH
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEe----ccCCCceEEecccCCCCcEEEEcCCCEEEE----EEECcccEehh
Confidence 888889999999999999999999999877 445556665555544445666668888776 67777777765
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.73 E-value=0.00015 Score=66.27 Aligned_cols=203 Identities=7% Similarity=-0.048 Sum_probs=117.9
Q ss_pred cCcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCe-eEEEeeCCCcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCC
Q 016458 67 AGKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD 143 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 143 (389)
-+.+.+|+|++.+..|+.+. ..+.|..+++..... ...+...-.....+++.+.+. ++++-...+.|.+.+++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence 34578999999666665544 467888888865532 223333335688999998555 44555667899999987632
Q ss_pred CCCCCcceeeecccccceEEEEEeeCCCcEEEEee-CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
........-.....|++.|.++.++++-. ..+.|...++......... ...-.....+++++.++.++
T Consensus 118 ------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-----~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 118 ------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-----NSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp ------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----CSSCSSEEEEEEETTTTEEE
T ss_pred ------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-----eCCCCCCcEEEEEccCCEEE
Confidence 11122233345678899987645555542 2467877787654443333 22345678999998666666
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCc
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 283 (389)
++-...+.|..+|+.... ......+.......+++..+ .++++-...+.|...|..+++
T Consensus 187 ~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEETTTCCEEEESSSCCE-EC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred EEeCCCCeEEEecCCCCc-cEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 666667889988886432 11111111122345666544 333344455667777765543
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.7e-05 Score=66.11 Aligned_cols=254 Identities=8% Similarity=0.024 Sum_probs=146.5
Q ss_pred cEEEEEEcCC-CCeEE-EEecCCcEEEEeCCCCCeeEEEeeCC---CcEEEEEE-------CCCCcEEEEecCCC-----
Q 016458 69 KVYSLDWTSE-RNRIV-SASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAF-------SPTGQSVACGGLDS----- 131 (389)
Q Consensus 69 ~v~~~~~~~~-~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~l~~~~~dg----- 131 (389)
....|+|+|. ...|+ +....+.|++.|..++.......... .....++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3668999983 44444 44444678889987766655444322 35899999 99999777665544
Q ss_pred --cEEEEeCCCCCCCCCCCcc---eeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCC-------CCee------
Q 016458 132 --VCSIFNLNSPTDKDGNLPV---SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-------TGLR------ 193 (389)
Q Consensus 132 --~i~vw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~------ 193 (389)
.|.+++..... .+.. ...+.. -.....++.+|++..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G----~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADG----TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTS----CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCC----ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 25566533211 1110 011211 12345778899665777777788999999997 5543
Q ss_pred -----EEEecCcccCCCCCCeeEEEeeCCCCc-EEEEeeCCCceEEEeCCCCCcce---eEEeee---c-----------
Q 016458 194 -----TSVFGGEFQSGHTADVLSVSISGSNSR-MFVSGSCDSTARLWDTRVASRAV---RTFHGH---E----------- 250 (389)
Q Consensus 194 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~----------- 250 (389)
...+. ..........++++| +++ ++++-+....|+.++.......+ ..+.+. .
T Consensus 295 ~~~g~~~~l~---~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 295 NNPNTFKQLF---TIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp GCTTTEEEEE---ECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccceeE---ecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 11110 022334567999999 666 45555567788886654321111 222221 0
Q ss_pred -cceE-EEEEe-------cCCCEEEEEecCCeEEEEECCCCceeeEeeccC-----------C--C------CCCCCeeE
Q 016458 251 -GDVN-TVKFF-------PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------G--E------NEIPHVTS 302 (389)
Q Consensus 251 -~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~--~------~~~~~i~~ 302 (389)
.... .++.. +++.++++-..+..|+.++ .++. +.++.... + . ........
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 1234 45554 4566667767788999999 4553 33333211 0 0 11234678
Q ss_pred EEeCCC-CCEEEEEecCCcEEEEEcccceEEE
Q 016458 303 IAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVL 333 (389)
Q Consensus 303 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (389)
++++++ |.++++=..+..|+.+++.......
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 999986 6555555567788888876554443
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.70 E-value=2.1e-05 Score=68.64 Aligned_cols=246 Identities=9% Similarity=0.078 Sum_probs=139.5
Q ss_pred cEEEEEECCC--CcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---C-eEE
Q 016458 111 WVMTCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q-TCV 184 (389)
Q Consensus 111 ~v~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~ 184 (389)
....++|+|+ +..|+.+...+.|+.++..++. ...+.........+++++++. ++++.... . .+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 3568899984 4445555444889999986543 223333445688999999984 44444321 1 233
Q ss_pred EEeCCCCee-EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--eccceEEEEEecC
Q 016458 185 LWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPD 261 (389)
Q Consensus 185 iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~ 261 (389)
..+...+.. ...+ ........++++|.++.++++-..++.|+.+|..++ .....+.. .......++|+|+
T Consensus 211 ~~~~~~~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 211 LFTRASGFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLTEEEVMMDTKGSNFHIVWHPT 283 (433)
T ss_dssp EECGGGTTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEEEEEEECSCCSSCEEEEECTT
T ss_pred EEECCCCeeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEEEEEeccCCCCCcccEEEeCC
Confidence 333322211 0111 112345667888856667666667788999998755 33122211 1122346999999
Q ss_pred CCEEEEE-ecCCeEEEEECCC--Cce--eeEeeccCC----------CCCCCCeeEEEe---------CCCCCEEEEEec
Q 016458 262 GNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQHG----------ENEIPHVTSIAF---------SISGRLLFAGYS 317 (389)
Q Consensus 262 ~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~----------~~~~~~i~~~~~---------~~~~~~l~~~~~ 317 (389)
+++|+.+ ...+.|+.++... +.. ...+..... .........+++ .++|.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 9955544 4678899988653 221 112211100 001223677999 777777666667
Q ss_pred CCcEEEEEcccceEEEeecCcC-------------CCCCCCeeEEEEC-CCCCeEEeeeCCCeeEEeecceecc
Q 016458 318 NGDCYVWDTLLAKVVLNLGSLQ-------------NSHEGRITCLGLS-ADGSALCTGSWDTNLKVNLGFWRVQ 377 (389)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~~~~W~~~ 377 (389)
++.|+.++. ++.......... ...-.....|+++ ++|.++++=...+.|+. .+++
T Consensus 364 n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~----i~~e 432 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK----IAPE 432 (433)
T ss_dssp TTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE----EEEC
T ss_pred CCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE----EecC
Confidence 788999985 554443331100 0112347789999 67766666556677777 6553
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.70 E-value=0.00018 Score=65.73 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=143.8
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEee-CCCcEEEEEECCCCcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+|+.+ ..+.|+..++.+......+.. .-..+..++|++.+..|+ +-..++.|..++++... .........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCC
Confidence 44444 446799999987654444332 224688999999666655 44567889988887532 122222222
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEe-eCCCceEEEeCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTR 237 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~ 237 (389)
.....+++.+.+++++++-...+.|.+.++......... ...-.....+++.|..+.++++- +..+.|...++.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d 154 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-----WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-----CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-----eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence 456788888776677777777889999998765443333 23334578999999566555553 225677777776
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.. ....+...-.....+++++++..|+.+. ..+.|..+|+..... ..+.... .....+++.. + .|+.+.
T Consensus 155 G~--~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l-----~~P~glav~~-~-~ly~tD 224 (628)
T 4a0p_A 155 GS--ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDL-----PHPFGLTQYQ-D-YIYWTD 224 (628)
T ss_dssp SC--SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECC-----SCEEEEEEET-T-EEEEEE
T ss_pred CC--ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccC-----CCceEEEEEC-C-EEEEec
Confidence 43 2333333445678999999776666554 567899999876444 3332211 1256777754 3 454444
Q ss_pred -cCCcEEEEEcccceE
Q 016458 317 -SNGDCYVWDTLLAKV 331 (389)
Q Consensus 317 -~dg~i~i~d~~~~~~ 331 (389)
..+.|...|..+++.
T Consensus 225 ~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 225 WSRRSIERANKTSGQN 240 (628)
T ss_dssp TTTTEEEEEETTTCCS
T ss_pred CCCCEEEEEECCCCCc
Confidence 477888888766543
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.67 E-value=6.6e-07 Score=82.97 Aligned_cols=233 Identities=11% Similarity=0.002 Sum_probs=135.2
Q ss_pred CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.+.|+..++.+......+.. ...+..++|++.+..|+.+ ...+.|+.+++........ ....+.........|++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEE
Confidence 35788888776655433332 2346788999877666655 4467899999875210000 11111111123456777
Q ss_pred eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-CceEEEeCCCCCcceeE
Q 016458 167 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRT 245 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 245 (389)
.+.+.+++++-...+.|.++++........+ .........+++.|..+.++++-... +.|..+++... ....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~--~~~~ 533 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYS 533 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC--CCCE
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEE-----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC--CeeE
Confidence 7655566666667889999998766544443 22234567888988555555554333 67888777633 2222
Q ss_pred Ee-eeccceEEEEEecCCCEEE-EEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE
Q 016458 246 FH-GHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 246 ~~-~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
+. ..-...+.|+|+|++..|+ +-+..+.|..+++.... ...+.... ........+++..+ .++++....+.|..
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 21 1223467899999755554 44567789999987433 33332211 01112345566443 34444456689999
Q ss_pred EEcccceEEEee
Q 016458 324 WDTLLAKVVLNL 335 (389)
Q Consensus 324 ~d~~~~~~~~~~ 335 (389)
++..+++.+..+
T Consensus 610 ~d~~~G~~~~~i 621 (699)
T 1n7d_A 610 ANRLTGSDVNLL 621 (699)
T ss_dssp EETTTEEEEECC
T ss_pred EEccCCCceEEe
Confidence 998888887776
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=5.5e-05 Score=71.13 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=107.5
Q ss_pred cEEEEEEC-CCCcEEEEecC-C----CcEEEEeCCCC-CCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC---
Q 016458 111 WVMTCAFS-PTGQSVACGGL-D----SVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--- 180 (389)
Q Consensus 111 ~v~~~~~~-~~~~~l~~~~~-d----g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 180 (389)
.+...+|| |||++|+.+.. + ..|+++|+.++ ... ...+. .....+.|+|++..++++...+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------CCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------Ccccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 57788999 99998886533 2 25999999886 311 11111 1234678999985555544321
Q ss_pred -CeEEEEeCCCCee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee---CCCceEEEeCCCCCcce--eEEe-eecc
Q 016458 181 -QTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAV--RTFH-GHEG 251 (389)
Q Consensus 181 -g~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~--~~~~-~~~~ 251 (389)
..|..+++.++.. ...+. .........+.|+| ++++|+... ....|+++|+..+.... ..+. ....
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~----~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYE----EHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEE----CCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCEEEEEECCCCchhcEEEEe----cCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887642 22321 12233467889999 666665544 23468888987652222 3332 2334
Q ss_pred ceEEEEEecCCCEEEEEe-cC----CeEEEEECCCCceeeE-eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCc--EEE
Q 016458 252 DVNTVKFFPDGNRFGTGS-DD----GTCRLFDIRTGHQLQV-YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--CYV 323 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~-~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~i 323 (389)
....+.|+. +..|+..+ .+ ..|..+|+.++..... +..... ...+..+.+. .+.++++...+|. |.+
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~---~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE---DVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS---SEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC---CcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 445555543 55554443 33 3677777764222122 211111 1124555554 2345556666775 555
Q ss_pred EEc
Q 016458 324 WDT 326 (389)
Q Consensus 324 ~d~ 326 (389)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 664
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.61 E-value=0.00019 Score=67.26 Aligned_cols=224 Identities=10% Similarity=-0.003 Sum_probs=133.6
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCC----eeEEEecCcccCCC
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGH 205 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 205 (389)
...|+..++.... ... +......+..++|.+....++++-...+.|+.+++... .....+ ...
T Consensus 403 ~~~Ir~i~l~~~~-------~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-----~~~ 469 (791)
T 3m0c_C 403 RHEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD 469 (791)
T ss_dssp BSSEEEECTTSCC-------CEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-----CSS
T ss_pred ccceeEeeccCCc-------cee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-----ecC
Confidence 3557777776532 122 22234567789999866566667777789999998753 222333 223
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe-c-CCeEEEEECCCCc
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-D-DGTCRLFDIRTGH 283 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~ 283 (389)
......|++.+..++++++-...+.|.+.++... .....+.........|+++|.+.+|+... . .+.|...++....
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 4556789998856677777777889999998754 22222223334578999999766666554 2 3689999987544
Q ss_pred eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
....... .......|++++.+..|+.+.. .+.|..+++........+.. ...-....+|++..+ .++++-.
T Consensus 549 ~~~lv~~-----~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~--~~~l~~P~glav~~~-~lYwtD~ 620 (791)
T 3m0c_C 549 IYSLVTE-----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFED-KVFWTDI 620 (791)
T ss_dssp EEEEECS-----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--TTTTSSEEEEEEETT-EEEEEET
T ss_pred eEEEEeC-----CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--CCccCCCCEEEEeCC-EEEEEEC
Confidence 3333221 1224789999987777777654 46799999865443333311 112234456776433 3334433
Q ss_pred CCCeeEEeecceecccC
Q 016458 363 WDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 363 ~dg~i~i~~~~W~~~~~ 379 (389)
..+.|.. -+..+|
T Consensus 621 ~~~~I~~----~dk~tG 633 (791)
T 3m0c_C 621 INEAIFS----ANRLTG 633 (791)
T ss_dssp TTTEEEE----EETTTC
T ss_pred CCCEEEE----EeCCCC
Confidence 4566665 554455
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.59 E-value=0.0002 Score=60.54 Aligned_cols=270 Identities=10% Similarity=0.161 Sum_probs=169.6
Q ss_pred cCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEE
Q 016458 87 QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (389)
Q Consensus 87 ~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 166 (389)
.+..|.|.|+.++..+...+... -+.-.+|..+.+|.-. ...+.|+|+++.. ......- ...|..-.|
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~A---dsAIMnP~~~iiALra-g~~lQiFnle~K~-------klks~~~-~e~VvfWkW 113 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKW 113 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCC---SEEEECSSSSCEEEEE-TTEEEEEETTTTE-------EEEEEEC-SSCCCEEEE
T ss_pred CCCeEEEEECCCCCcceeccccc---ceeeeCCCCcEEEEec-CCeEEEEchHHhh-------hhcceec-CCCceEEEe
Confidence 33478999998877664444332 2445688888887765 6789999998743 2222222 345666778
Q ss_pred eeCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-Eee------CCCceEEEeCCC
Q 016458 167 VPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGS------CDSTARLWDTRV 238 (389)
Q Consensus 167 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~ 238 (389)
.... .|+..+ +..|+-|++... .+...+.... .-....|..-..++ +.++++ +|- -.|.+.+|..+.
T Consensus 114 is~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~-~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 114 ISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS-SLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp EETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCG-GGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred cCCC--eEEEEc-CCeeEEecccCCCCchhheecch-hcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccc
Confidence 7754 444433 467999999753 4444553221 12245677777777 455544 332 247889999884
Q ss_pred CCcceeEEeeeccceEEEEEecC---CCEEEEEecC---CeEEEEECCCC--------ceeeEeeccCCCCCCCCeeEEE
Q 016458 239 ASRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDD---GTCRLFDIRTG--------HQLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---g~i~i~d~~~~--------~~~~~~~~~~~~~~~~~i~~~~ 304 (389)
...+.+.+|......+.+..+ ..+++.+... +.+++.++... +....+.... .....-..++.
T Consensus 189 --~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~DFPvamq 265 (494)
T 1bpo_A 189 --KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQ 265 (494)
T ss_dssp --CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTCCEEEEE
T ss_pred --cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccCceeEEE
Confidence 456677777766554444321 1244444432 78999998543 1111111111 11122356788
Q ss_pred eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
.++....++.-+.-|.|++||+.++..+..- +-...+|..-+-+....=++.....|.|.- -.+++..+.|+
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~----v~v~e~~ivpy 337 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS----VCVEEENIIPY 337 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEE----EEECTTTHHHH
T ss_pred ecccCCEEEEEecCceEEEEecccceeeeee----cccCCceEEecccCCCCcEEEEccCceEEE----EEEccccchhh
Confidence 8888889999999999999999999999877 445556666665555555666678888876 77777777765
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.58 E-value=6.1e-05 Score=62.30 Aligned_cols=186 Identities=13% Similarity=0.233 Sum_probs=119.8
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC---CCc---EEEEeeC---CCceEEEeCCCCCcc
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS---NSR---MFVSGSC---DSTARLWDTRVASRA 242 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~i~d~~~~~~~ 242 (389)
.+++.....+-+.+||+ +++.+..+ .. +.++.+..-|. ++. ++++... +++|.+|++......
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~-----~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSY-----NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEE-----CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEc-----cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 45777777889999999 78888777 22 45677766651 111 3333333 578999977422233
Q ss_pred eeEEee------ec-cceEEEEE--ecC-CC-EEEEEecCCeEEEEECC-------CCceeeEeeccCCCCCCCCeeEEE
Q 016458 243 VRTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 243 ~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~~~i~~~~ 304 (389)
+..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+..+.... .+-.+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------q~Egcv 186 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------QTEGMA 186 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------CEEEEE
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------CcceEE
Confidence 444311 11 45677888 664 43 68888899999999983 223444444432 378889
Q ss_pred eCCCCCEEEEEecCCcEEEEEcc-----cceEEEeecCcCCCCCCCeeEEEE--CCCCC-eEEeee-CCCeeEEeeccee
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTL-----LAKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKVNLGFWR 375 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~i~~~~W~ 375 (389)
..+....|+++-++..|..++.. +++.+..+.. ......+..|++ .++++ +|++++ .+..+.+ |+
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V----yd 260 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI----YD 260 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE----EE
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEE----EE
Confidence 99988999999998777777754 3445544421 222346888888 45655 566655 5778998 99
Q ss_pred cc
Q 016458 376 VQ 377 (389)
Q Consensus 376 ~~ 377 (389)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.51 E-value=0.00012 Score=60.12 Aligned_cols=170 Identities=11% Similarity=0.021 Sum_probs=110.6
Q ss_pred ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc--CCCCCCeeEEEe---eCCCCcEEEEeeC---
Q 016458 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSI---SGSNSRMFVSGSC--- 227 (389)
Q Consensus 156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~---~~~~~~~l~~~~~--- 227 (389)
.......++.|.+....++++.-..+.|..||...+........... ......+..+.+ .| .+.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 33444557789886645555555799999999986644433211100 011123578899 57 5777775442
Q ss_pred ----------CCceEEEeCC---CCCcceeEEe--eec-----------cceEEEEEecCCCEEEEEecC-CeEEEEECC
Q 016458 228 ----------DSTARLWDTR---VASRAVRTFH--GHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFDIR 280 (389)
Q Consensus 228 ----------dg~i~i~d~~---~~~~~~~~~~--~~~-----------~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 280 (389)
+..|..||+. ++ +.+.... ... .....++..++|+..++++.. +.|..++..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5779999998 55 3433332 111 247899999999999999988 888888866
Q ss_pred CCceeeEeeccC-CCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 281 TGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 281 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
.. ....+.... ........+.++++|+|+.|++....|.+..+|+..
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 43 333332211 111223478999999999888887799999999874
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.50 E-value=0.00031 Score=64.20 Aligned_cols=235 Identities=8% Similarity=-0.024 Sum_probs=134.7
Q ss_pred eEEEEecCCcEEEEeCCCCC-eeEEEeeCCCcEEEEEECCCCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeeecccc
Q 016458 81 RIVSASQDGRLIVWNALTSQ-KTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+|+-+. ...|+..++.... ...........+..++|++.+..|+.+ ...+.|..++++.... ....+...-
T Consensus 11 ~~~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~ 83 (619)
T 3s94_A 11 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGL 83 (619)
T ss_dssp CEEEEC-SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSC
T ss_pred eEEEec-cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCC
Confidence 344333 4578888887543 222222334568899999976666655 4467888888875310 112222222
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCC
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTR 237 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 237 (389)
.....+++.+.+.+++++-...+.|.+.++......... ...-.....+++.|.++.++++-- ..+.|...++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-----~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-----eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 467889999876677777777899999999866544333 233445778999985565555532 23566666665
Q ss_pred CCCcceeEEeeeccceEEEEEecCCCEEEEE-ecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.. .........-.....+++++++..|+.+ ...+.|..+|+............. .....+++..+ ..+++-.
T Consensus 159 G~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~-----~~P~gi~~~~~-~ly~td~ 231 (619)
T 3s94_A 159 GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-----PHPFALTLFED-ILYWTDW 231 (619)
T ss_dssp SC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECT
T ss_pred CC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC-----CCceEEEEeCC-EEEEecC
Confidence 33 2222222233457899999976666555 456789999987543332221111 12356777655 3333444
Q ss_pred cCCcEEEEEcccceEEEe
Q 016458 317 SNGDCYVWDTLLAKVVLN 334 (389)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~ 334 (389)
.++.|...|..+++....
T Consensus 232 ~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 232 STHSILACNKYTGEGLRE 249 (619)
T ss_dssp TTCSEEEEESSSCCCCEE
T ss_pred CCCEEEEEECCCCcccEE
Confidence 567899999877654433
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.49 E-value=1.9e-06 Score=79.96 Aligned_cols=225 Identities=9% Similarity=-0.019 Sum_probs=126.7
Q ss_pred CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC----CeeEEEecCcccCCC
Q 016458 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGH 205 (389)
Q Consensus 130 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~ 205 (389)
.+.|+..++.... ..... .....+..++|.+.+..++++-...+.|+.+++.. ......+ ...
T Consensus 385 ~~~I~~id~~~~~-------~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-----~~~ 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSE-------YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-----SRD 451 (699)
T ss_dssp TTC-CEECTTSCC-------EECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-----CSC
T ss_pred ccceEEEeCCCCc-------ceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-----eCC
Confidence 3467777766532 11111 12234567889887655555556678899999875 1211111 111
Q ss_pred CCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe-eeccceEEEEEecCCCEEEEEec-C-CeEEEEECCCC
Q 016458 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSD-D-GTCRLFDIRTG 282 (389)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~ 282 (389)
......+++.+..++++++-...+.|.++++... ....+. ........++++|.+.+|+.+.. . +.|..+++...
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC--ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 2335667887656677776666789999998743 222332 22245678999996655555442 2 67888887643
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
.. ..+... .......|+|+|++..|+.+. ..+.|..+++........+.. .........|++..+ .++++.
T Consensus 530 ~~-~~l~~~----~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~~~P~glavd~~-~lywtd 601 (699)
T 1n7d_A 530 DI-YSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFED-KVFWTD 601 (699)
T ss_dssp CC-CEESCS----SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC--SSSCSSCCCCEEETT-EEEEEC
T ss_pred Ce-eEEEeC----CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec--CCcCCCceEeEEECC-EEEEEe
Confidence 22 222111 112357899999866555554 556899999865333322210 111233445666554 455555
Q ss_pred eCCCeeEEeecceecccCcc
Q 016458 362 SWDTNLKVNLGFWRVQEGAL 381 (389)
Q Consensus 362 ~~dg~i~i~~~~W~~~~~~~ 381 (389)
...+.|.. ++..+|+.
T Consensus 602 ~~~~~V~~----~d~~~G~~ 617 (699)
T 1n7d_A 602 IINEAIFS----ANRLTGSD 617 (699)
T ss_dssp STTTCEEE----EETTTEEE
T ss_pred CCCCeEEE----EEccCCCc
Confidence 56677877 77665543
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.45 E-value=0.00023 Score=60.18 Aligned_cols=233 Identities=10% Similarity=0.075 Sum_probs=122.6
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE--Ee---eCCCcEEEEEECCC---CcEEEEecC-C-----Cc
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IK---LPCAWVMTCAFSPT---GQSVACGGL-D-----SV 132 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 132 (389)
-.....++|.|+|+++++ ..+|.|++++ +++.... +. ........++++|+ +..|+++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 335679999999985554 5669999998 4432211 11 12346899999998 555554433 2 56
Q ss_pred EEEEeCCCCCCCCCCCcceeeec---ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCCe----
Q 016458 133 CSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTGL---- 192 (389)
Q Consensus 133 i~vw~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~---- 192 (389)
|..|+....... ....+...+. ........++|.|+| .++++.+. .|.|..++....-
T Consensus 107 v~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 777777642100 0000111122 111123578999998 55555332 2566666654310
Q ss_pred --------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCc--------eEEEeCCC---------------CCc
Q 016458 193 --------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--------ARLWDTRV---------------ASR 241 (389)
Q Consensus 193 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~---------------~~~ 241 (389)
....+. .++ .....++|+|..+.++++-..... |.+..... ...
T Consensus 185 pf~~~~~~~~~i~a----~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 185 PFLGRRGARPEVYS----LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTTTCTTSCTTEEE----ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred cccCCCCCCccEEE----EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 000000 112 235677888855565555333222 33332111 001
Q ss_pred ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------LQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
++..+. +......++| .+|.++++....+.|...++..... ...+.. ....+..+++.|||.++++.
T Consensus 260 p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 260 PLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECTTSCEEEEE
T ss_pred CeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECCCCcEEEEE
Confidence 222332 2234567777 4677766666777888887764431 122221 12348999999999766655
Q ss_pred e
Q 016458 316 Y 316 (389)
Q Consensus 316 ~ 316 (389)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00032 Score=61.41 Aligned_cols=250 Identities=9% Similarity=0.030 Sum_probs=140.8
Q ss_pred EEEEEECCC-CcEEE-EecCCCcEEEEeCCCCCCCCCCCcceeeecc---cccceEEEEE-------eeCCCcEEEEeeC
Q 016458 112 VMTCAFSPT-GQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQY-------VPDEDTHLITSSG 179 (389)
Q Consensus 112 v~~~~~~~~-~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~~~~~ 179 (389)
...|+|+|. ...|+ +-...+.|++.|+..+. +...... .......++| ++++..++++...
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 568999983 44444 44445678888887643 2222211 1235789999 9998544444444
Q ss_pred CC------eEEEEeCCC-CeeE-----EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCC-------CCC
Q 016458 180 DQ------TCVLWDITT-GLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-------VAS 240 (389)
Q Consensus 180 dg------~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~ 240 (389)
++ .|.+++... +... ..+. .......++++|.++.++++-..++.|..+|+. ++.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 32 366665443 1211 1221 112446778898677777777788899999987 332
Q ss_pred c-----c-----eeEE-e-eeccceEEEEEecCCCEEEEE-ecCCeEEEEECCC--Cce--eeEeecc---CCC------
Q 016458 241 R-----A-----VRTF-H-GHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--GHQ--LQVYYQQ---HGE------ 294 (389)
Q Consensus 241 ~-----~-----~~~~-~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~---~~~------ 294 (389)
. + ...+ . +.......++|+|++++|+.+ +....|+.++... +.. ...+... .+.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~ 367 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT 367 (496)
T ss_dssp CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence 1 0 1122 1 122346789999999965544 5677899866543 221 1122211 000
Q ss_pred -CCCCCee-EEEeC-------CCCCEEEEEecCCcEEEEEcccceEEEeecCc-------------------CCCCCCCe
Q 016458 295 -NEIPHVT-SIAFS-------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------------------QNSHEGRI 346 (389)
Q Consensus 295 -~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------~~~~~~~v 346 (389)
....... .++.. ++|.++++=..+.+|+.++ .++......... ....-...
T Consensus 368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 0111234 44554 4566666666778899998 455433222110 00112357
Q ss_pred eEEEECCC-CCeEEeeeCCCeeEEeecceecccC
Q 016458 347 TCLGLSAD-GSALCTGSWDTNLKVNLGFWRVQEG 379 (389)
Q Consensus 347 ~~~~~~~~-~~~l~~~~~dg~i~i~~~~W~~~~~ 379 (389)
..|+++++ |.++++=.....|+. ++++..
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrk----i~~~~~ 476 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRT----ISMEQE 476 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE----EEECCC
T ss_pred cEEEEECCCCEEEEEeCCCCEEEE----EECCCC
Confidence 78999996 766666666778888 777653
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.40 E-value=0.00029 Score=58.29 Aligned_cols=195 Identities=8% Similarity=0.197 Sum_probs=121.3
Q ss_pred CCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCC----Cc---EEE-EecC--CCcEEEEeCCCCCCCCCCC
Q 016458 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT----GQ---SVA-CGGL--DSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 79 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~-~~~~--dg~i~vw~~~~~~~~~~~~ 148 (389)
..+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ +++ +... +++|.+|+++.... .
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---~- 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---T- 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---C-
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---c-
Confidence 346666667788999999 8888888754 45666666552 22 223 3333 57899998753221 1
Q ss_pred cceeeec------ccc-cceEEEEE--eeCCC-cEEEEeeCCCeEEEEeCC-------CCeeEEEecCcccCCCCCCeeE
Q 016458 149 PVSRMLS------GHK-GYVSCCQY--VPDED-THLITSSGDQTCVLWDIT-------TGLRTSVFGGEFQSGHTADVLS 211 (389)
Q Consensus 149 ~~~~~~~------~~~-~~v~~~~~--~~~~~-~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~v~~ 211 (389)
..... ... ..+..+++ +|... .++++...+|.+..|++. +.+.+..+ .....+..
T Consensus 113 --l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f------~lgsq~Eg 184 (355)
T 3amr_A 113 --LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF------KMNSQTEG 184 (355)
T ss_dssp --EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE------ECSSCEEE
T ss_pred --eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe------cCCCCcce
Confidence 11111 011 45566777 55433 468888889999999983 23445555 23457888
Q ss_pred EEeeCCCCcEEEEeeCCCceEEEeCCCCC----cceeEEe-ee-ccceEEEEEe--cCCC-EEEEEe-cCCeEEEEECC-
Q 016458 212 VSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFH-GH-EGDVNTVKFF--PDGN-RFGTGS-DDGTCRLFDIR- 280 (389)
Q Consensus 212 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~-~~-~~~i~~~~~~--~~~~-~l~~~~-~dg~i~i~d~~- 280 (389)
+...+ ....|+.+-++..|..|+.+-.. ..+..+. ++ ...+..|++. ++++ +|++++ .++.+.+||..
T Consensus 185 cvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 185 MAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 88887 66788888888777777754221 2232221 11 2367888884 4555 666666 67799999996
Q ss_pred CCceeeEee
Q 016458 281 TGHQLQVYY 289 (389)
Q Consensus 281 ~~~~~~~~~ 289 (389)
+.+.+..+.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 555566654
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.39 E-value=0.00015 Score=60.72 Aligned_cols=220 Identities=14% Similarity=0.128 Sum_probs=115.5
Q ss_pred CCCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeC--CCcEEEEe-eC--CCeEEEEeCCCCeeEEEecCccc
Q 016458 129 LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPD--EDTHLITS-SG--DQTCVLWDITTGLRTSVFGGEFQ 202 (389)
Q Consensus 129 ~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~ 202 (389)
.+|.|.++|.++.......+..... +.........+.+.++ +..+|+.+ .. +..|.+|++........+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6889999998753211111111100 1112346677777763 43334443 32 46777877655322222211111
Q ss_pred CCCCCCeeEEEeeCCCCcEEEEee-----------------CCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEE
Q 016458 203 SGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (389)
Q Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 265 (389)
...-...+.+.+.+ ++.++++.. ..|.|.-+|.. . +..+...-...+.++|+||++.|
T Consensus 161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence 22345678899998 777766643 12455555542 2 23333334457899999999887
Q ss_pred EEEe-cCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCC-CCCEEEEEecC-CcEEEEEcc--cceEEEeecCcCC
Q 016458 266 GTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSN-GDCYVWDTL--LAKVVLNLGSLQN 340 (389)
Q Consensus 266 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~ 340 (389)
+++. ..+.|..|++.....+........ ....-.+++.+ +|++.+++..+ +.|..|+.. .+..+..+... .
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~-~ 311 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDI-L 311 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECT-T
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEcc-C
Confidence 7665 578899999864222211111110 12367889999 59877766544 345445543 24445444321 1
Q ss_pred CCCCCeeEEEECCCCCeE
Q 016458 341 SHEGRITCLGLSADGSAL 358 (389)
Q Consensus 341 ~~~~~v~~~~~~~~~~~l 358 (389)
.....|..+ |..||+.+
T Consensus 312 ~~~~~v~~v-~~ddG~~l 328 (355)
T 3sre_A 312 SEEPKVTVV-YAENGTVL 328 (355)
T ss_dssp SSSCEEEEE-EEECSSSC
T ss_pred CCCcEEEEE-EEcCCCEE
Confidence 123344444 44466643
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.34 E-value=0.00077 Score=55.33 Aligned_cols=208 Identities=9% Similarity=-0.032 Sum_probs=124.1
Q ss_pred CcEEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCeeEEEeeCC--------CcEEEEEE---CCCCcEEEEec-------
Q 016458 68 GKVYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPC--------AWVMTCAF---SPTGQSVACGG------- 128 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~l~~~~------- 128 (389)
----+++|++....|..++ ..++|..|+...+..... .... ..+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3345789988655666555 789999999876654433 2221 13688999 68887777543
Q ss_pred ------CCCcEEEEeCC---CCCCCCCCCcceeeeccc-----------ccceEEEEEeeCCCcEEEEeeCC-CeEEEEe
Q 016458 129 ------LDSVCSIFNLN---SPTDKDGNLPVSRMLSGH-----------KGYVSCCQYVPDEDTHLITSSGD-QTCVLWD 187 (389)
Q Consensus 129 ------~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd 187 (389)
.+..+..||+. +++ ......+... ......++..++| +..++++.. +.|...+
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~-----~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSK-----PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVS 165 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCC-----CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEEC
T ss_pred cccccCCCCEEEEEcCCcCCCCC-----EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEe
Confidence 25779999988 433 1112222211 1347899999998 677778877 8888888
Q ss_pred CCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEe--ee---ccceEEE-EEecC
Q 016458 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH---EGDVNTV-KFFPD 261 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~~i~~~-~~~~~ 261 (389)
......................+.++++| ++++|++....|.|..+|++.......... +. -.....+ ..-.+
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 76543322221110012233477999999 666666665699999999985421001111 21 1123343 33347
Q ss_pred CCE-EEEEecCCeEEEEECCCCc
Q 016458 262 GNR-FGTGSDDGTCRLFDIRTGH 283 (389)
Q Consensus 262 ~~~-l~~~~~dg~i~i~d~~~~~ 283 (389)
|+. +++....+.+.+.+....+
T Consensus 245 G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp TEEEEEEEETTEEEEEECSSTTS
T ss_pred CEEEEEEcCCCCEEEEECCCCcc
Confidence 777 4555556667776655543
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.33 E-value=0.001 Score=56.27 Aligned_cols=234 Identities=10% Similarity=0.011 Sum_probs=124.3
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee---cccccceEEEEEeeC---CCcEEEEeeC---
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---SGHKGYVSCCQYVPD---EDTHLITSSG--- 179 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~~~~~--- 179 (389)
-.....++|.|+|+++++ ..+|.|.+++... . .....+ .........|+++|+ +..++++-+.
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K------KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c------eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 345789999999985554 5568998886322 1 111111 112345789999997 4344444332
Q ss_pred C----CeEEEEeCCCC--ee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCC
Q 016458 180 D----QTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV 238 (389)
Q Consensus 180 d----g~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~ 238 (389)
+ ..|..|+.... .. ...+..............++|.| ++.++++.+. .|.|.-++...
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 3 67888887654 11 11110000011112346789998 7777766432 24455555432
Q ss_pred CC-------cceeEEeeeccceEEEEEec-CCCEEEEEecCC---eEEEEECCCCc------------------eeeEee
Q 016458 239 AS-------RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG---TCRLFDIRTGH------------------QLQVYY 289 (389)
Q Consensus 239 ~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~------------------~~~~~~ 289 (389)
.- .......++.. ...++|+| ++.++++-...+ .|.+.. .+. +...+.
T Consensus 179 ~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 179 RPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp CCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC
Confidence 10 01111223333 46899999 666555433222 233322 111 011110
Q ss_pred ccCCCCCCCCeeEEEeC-------CCCCEEEEEecCCcEEEEEcccc-eEE--EeecCcCCCCCCCeeEEEECCCCCeEE
Q 016458 290 QQHGENEIPHVTSIAFS-------ISGRLLFAGYSNGDCYVWDTLLA-KVV--LNLGSLQNSHEGRITCLGLSADGSALC 359 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 359 (389)
........++|. .+|.++++....+.|...++... +.. ..+. ......+..+++.|||.+.+
T Consensus 256 -----~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~~~rp~~v~~~pDG~lyv 327 (354)
T 3a9g_A 256 -----SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF---KNVFGRLRDVVIDDDGGILI 327 (354)
T ss_dssp -----TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC---TTTSCCEEEEEECTTSCEEE
T ss_pred -----CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec---cCCCCCeeEEEECCCCcEEE
Confidence 011236778883 46777777666778988888753 322 2221 22346789999999997666
Q ss_pred eee
Q 016458 360 TGS 362 (389)
Q Consensus 360 ~~~ 362 (389)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.28 E-value=0.00092 Score=56.54 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=121.2
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee---eecccccceEEEEEeeC---CCcEEEEeeCC--
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR---MLSGHKGYVSCCQYVPD---EDTHLITSSGD-- 180 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-- 180 (389)
-.....++|.|+|+++++ ..+|.|.+++ .. . ..... ...........++++|+ +..++++-...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~-----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-R-----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-E-----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-C-----ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 345789999999985555 5569999988 22 1 00111 11112346789999997 43444444432
Q ss_pred ---CeEEEEeCCCCee-----E-EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCC
Q 016458 181 ---QTCVLWDITTGLR-----T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRV 238 (389)
Q Consensus 181 ---g~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~ 238 (389)
+.|..++...+.. + ..++.. .........++|.| ++.++++.+. .|.|.-++...
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~--~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPAR--PHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCC--TTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCC--CCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 6788888775421 1 112100 01112346899999 6677666432 14555565542
Q ss_pred C------------CcceeEEeeeccceEEEEEec-CCCEEEEEecCCeE------EEEECCCCc----------------
Q 016458 239 A------------SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGH---------------- 283 (389)
Q Consensus 239 ~------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~---------------- 283 (389)
. ........++. ....++|+| ++.++++-.....+ .+.-+..+.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred CCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCC
Confidence 0 01111122333 357799999 66655544333321 122222221
Q ss_pred --eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceE------EEeecCcCCCCCCCeeEEEECCCC
Q 016458 284 --QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV------VLNLGSLQNSHEGRITCLGLSADG 355 (389)
Q Consensus 284 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 355 (389)
+...+ ........++| .+|.++++....+.|...++..... ...+. .....+..+++.|||
T Consensus 258 ~~p~~~~------~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~----~~~~rp~~v~~~pdG 326 (352)
T 2ism_A 258 RDPLYFW------PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL----SGFGRLREVQVGPDG 326 (352)
T ss_dssp CCCSEEC------TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE----ESSCCEEEEEECTTS
T ss_pred cCCeEec------CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec----ccCCCeeEEEECCCC
Confidence 00010 00112467777 4666666665667788877764321 11221 123578999999999
Q ss_pred CeEEeee
Q 016458 356 SALCTGS 362 (389)
Q Consensus 356 ~~l~~~~ 362 (389)
.++++..
T Consensus 327 ~lyv~~~ 333 (352)
T 2ism_A 327 ALYVTTS 333 (352)
T ss_dssp CEEEEEC
T ss_pred cEEEEEe
Confidence 8776654
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.25 E-value=0.00034 Score=57.81 Aligned_cols=232 Identities=12% Similarity=0.145 Sum_probs=116.1
Q ss_pred CCCeEEEEe-cC-----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 016458 78 ERNRIVSAS-QD-----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDK 144 (389)
Q Consensus 78 ~~~~l~~~~-~d-----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 144 (389)
++.+++.|+ .+ ..+.+||..+.+-...-..+. .....+. .++..++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~- 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED- 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence 344556665 32 368888887664322111111 1112222 357777777754 4688888876430
Q ss_pred CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
..+.....+.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-.. .....-.+++.. ++
T Consensus 91 -~~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 91 -GVWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----QTAREGAGLVVA--SG 160 (301)
T ss_dssp -CCCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEEEE--TT
T ss_pred -CeeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC----CCCcccceEEEE--CC
Confidence 002222222111111222222 3 3677777654 3688999988765443211 111112223333 56
Q ss_pred cEEEEeeCC-----CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeE
Q 016458 220 RMFVSGSCD-----STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV 287 (389)
Q Consensus 220 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 287 (389)
.+++.|+.+ ..+..||+.+. ....+.....+ -.+++. -++++++.|+.+ ..+.+||+.+.+-...
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 778887754 45888898754 12222111111 112222 266777777764 4689999987654332
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccce
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK 330 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 330 (389)
-..... ......+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 238 ~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 238 TSMTTP---RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCCSSC---CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCc---ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 211111 111222233 66777777665 357888887654
No 307
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.24 E-value=0.0035 Score=59.12 Aligned_cols=292 Identities=11% Similarity=0.040 Sum_probs=156.2
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.|.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+. +.+ -+.+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~----- 263 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPL----- 263 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCC-----
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcE-----
Confidence 4888888877765555654 35888887766543322223345888888877776554 444 477777655321
Q ss_pred cceeee-----cccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 149 PVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 149 ~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
...... .-....|.++....++ .|-.|+..| +.++.....-................|.++.... ++.+.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE
Confidence 000000 0123457887766655 356666667 5444332211111110000012234678887765 555544
Q ss_pred EeeCCCceEEEeCCCCC-cceeEEee-------eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCC-
Q 016458 224 SGSCDSTARLWDTRVAS-RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE- 294 (389)
Q Consensus 224 ~~~~dg~i~i~d~~~~~-~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 294 (389)
|+.+| +..++..+.. .....+.. ....|.++.-..++.+. .|+ ++-|..||..+++... +......
T Consensus 340 -Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~-~~~~~~~~ 414 (758)
T 3ott_A 340 -GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIH-YNIVDNTG 414 (758)
T ss_dssp -EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEE-EEEECCC-
T ss_pred -eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEE-eecCCCcC
Confidence 45554 6666655321 11222210 12357888877777644 455 4579999987764332 2211111
Q ss_pred -CCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc-----eEE---EeecCcCCCCCCCeeEEEECCCCCeEEe-eeCC
Q 016458 295 -NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----KVV---LNLGSLQNSHEGRITCLGLSADGSALCT-GSWD 364 (389)
Q Consensus 295 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 364 (389)
.....|.++...++|+ |.+|+..+-|..+|..+. ... ..+..........|.++..+++|.+.+. ++..
T Consensus 415 ~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~ 493 (758)
T 3ott_A 415 TYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK 493 (758)
T ss_dssp -CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred CCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence 1123478888777765 455666667889986531 111 1111000112346899999999987763 4444
Q ss_pred CeeEEeecceecccCcccC
Q 016458 365 TNLKVNLGFWRVQEGALSP 383 (389)
Q Consensus 365 g~i~i~~~~W~~~~~~~~~ 383 (389)
| +.. ++..+++...
T Consensus 494 G-l~~----~d~~~~~~~~ 507 (758)
T 3ott_A 494 G-IDK----INPRTREVTK 507 (758)
T ss_dssp S-EEE----EETTTTEEEE
T ss_pred C-cEE----EeCCCCceEE
Confidence 5 555 7777665544
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.23 E-value=0.0017 Score=54.93 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=124.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-eeEEEe---eCCCcEEEEEECCC---CcEEEEecC----C----C
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIK---LPCAWVMTCAFSPT---GQSVACGGL----D----S 131 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 131 (389)
-.....|+|.|+|++++ +..+|.|++++ .+++ .+..+. ........++++|+ +..|+++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997544 55669999997 4454 111111 12345889999997 455544432 2 5
Q ss_pred cEEEEeCCCCCCCCCCCc-ceeeec-ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCC-----
Q 016458 132 VCSIFNLNSPTDKDGNLP-VSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG----- 191 (389)
Q Consensus 132 ~i~vw~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~----- 191 (389)
.|..|+............ +...+. ........+.|.|++ .++++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 677777664310000000 111111 111124568999998 45555332 255666665432
Q ss_pred ----eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC---ceEEEeCCC---------------CCcceeEEeee
Q 016458 192 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRV---------------ASRAVRTFHGH 249 (389)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~~~~~~ 249 (389)
..+.. .++ .....++|+|..+.++++-.... .|.+..... ...++..+...
T Consensus 185 pf~~~~i~a------~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFPNSPIWS------YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SSTTCCEEE------ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCcEEE------Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 01111 122 23567889985555555432221 233322110 00122232112
Q ss_pred ccceEEEEEe-------cCCCEEEEEecCCeEEEEECCCC-cee--eEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 250 EGDVNTVKFF-------PDGNRFGTGSDDGTCRLFDIRTG-HQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 250 ~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
......++|. .++.++++.-..+.|...++... ... ..+.. .....+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK----NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT----TTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc----CCCCCeeEEEECCCCcEEEEEe
Confidence 2356788884 46777777767788988888753 221 12211 1123588999999997665553
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.22 E-value=0.00064 Score=56.15 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=97.6
Q ss_pred CcEEEEeeCC-----CeEEEEeCCCCe---eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-----ceEEEeCC
Q 016458 171 DTHLITSSGD-----QTCVLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTR 237 (389)
Q Consensus 171 ~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~ 237 (389)
+.+++.|+.+ ..+.+||+.+.. -...-.. .....-.+++.. ++.+++.|+.++ .+.+||+.
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~----p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM----NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC----SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC----CCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence 3677777754 468999998876 3333211 111112223333 567778777543 57888887
Q ss_pred CCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCC
Q 016458 238 VASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (389)
Q Consensus 238 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (389)
+.. ...+.....+ -.+++. .++++++.|+.+ ..+.+||+.+.+-...-.... .......+.+ +++
T Consensus 137 ~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~--~~~ 208 (301)
T 2vpj_A 137 IDQ--WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALL--NDH 208 (301)
T ss_dssp TTE--EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS---CCBSCEEEEE--TTE
T ss_pred CCe--EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc---ccccceEEEE--CCE
Confidence 541 2222211111 112222 267777777754 458899988765433211111 1111122222 567
Q ss_pred EEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceecccCc
Q 016458 311 LLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQEGA 380 (389)
Q Consensus 311 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~~~ 380 (389)
+++.|+.+ ..+.+||+.+.+-...- ....... ....+.+ ++++++.|+.++ .+.+ +|+.+.+
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~~~ 280 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-SMTTPRC-YVGATVL--RGRLYAIAGYDGNSLLSSIEC----YDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSSBEEEEEE----EETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcEEECC-CCCCccc-ceeEEEE--CCEEEEEcCcCCCcccccEEE----EcCCCCe
Confidence 77777654 46899999876543322 1111111 1122222 677888887663 3455 7776654
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.17 E-value=0.00057 Score=56.47 Aligned_cols=228 Identities=13% Similarity=0.147 Sum_probs=113.7
Q ss_pred CeEEEEecC----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecCC-----CcEEEEeCCCCCCCCCCC
Q 016458 80 NRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 80 ~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~ 148 (389)
.+++.|+.+ ..+..||..+.+-...-..+. ..-..+.+ ++..++.|+.+ ..+.+||..+.. +
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W 89 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-----W 89 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE-----E
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc-----e
Confidence 345555533 357888887664322211111 11122222 67777777754 357888877633 1
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCC-----eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEE
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (389)
.....+.........+.+ + +.+++.|+.++ .+.+||+.+..-...-.. .....-.+++.. ++.+++
T Consensus 90 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv 160 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM----NTRRSSVGVGVV--GGLLYA 160 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEE
T ss_pred eeCCCCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC----CCcccCceEEEE--CCEEEE
Confidence 111111111111122222 3 36777777553 578899988765444211 111112233333 567777
Q ss_pred EeeCC-------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEee
Q 016458 224 SGSCD-------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYY 289 (389)
Q Consensus 224 ~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~ 289 (389)
.|+.+ ..+.+||+.+. ....+.....+ -.+++. -++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence 77653 35888998754 11122111111 112222 267777888764 368999988764333221
Q ss_pred ccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccceE
Q 016458 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAKV 331 (389)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 331 (389)
..... .....+. .++++++.|+.++ .+.+||..+.+-
T Consensus 238 ~~~~r---~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 238 MNMCR---RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CSSCC---BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCcc---ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 11111 1112222 2667777777653 589999887654
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.15 E-value=0.0011 Score=55.60 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=108.4
Q ss_pred ceEEEEEeeCCCcEEEEee-------------CCCeEEEEeCCCC-eeEEEecCcc--cCCCCCCeeEEEeeCC-CC--c
Q 016458 160 YVSCCQYVPDEDTHLITSS-------------GDQTCVLWDITTG-LRTSVFGGEF--QSGHTADVLSVSISGS-NS--R 220 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~-------------~dg~i~iwd~~~~-~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~--~ 220 (389)
..-++...|+| ++++++ .+|.|.++|+.+. .....+.... .....-....+.+.++ ++ .
T Consensus 51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34556667765 344443 6899999998742 1122221100 0112345677777552 22 3
Q ss_pred EEEEeeC--CCceEEEeCCCCCcceeEE---eee-ccceEEEEEecCCCEEEEEe-----------------cCCeEEEE
Q 016458 221 MFVSGSC--DSTARLWDTRVASRAVRTF---HGH-EGDVNTVKFFPDGNRFGTGS-----------------DDGTCRLF 277 (389)
Q Consensus 221 ~l~~~~~--dg~i~i~d~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~ 277 (389)
++++-.. +..|.+|++.........+ .+. -...+.+.+.++|.+.++.. ..|.|..+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4454333 4678888776543322222 211 13478999999998777654 12456666
Q ss_pred ECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe-cCCcEEEEEccc-ceE--EEeecCcCCCCCCCeeEEEECC
Q 016458 278 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL-AKV--VLNLGSLQNSHEGRITCLGLSA 353 (389)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~v~~~~~~~ 353 (389)
|. ++ ......... ..+.++|+||++.|+++. ..+.|..|++.. +.. ...+ ...+..-.+++++
T Consensus 209 d~--~~-~~~~~~~l~-----~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-----~~~g~PDGi~vD~ 275 (355)
T 3sre_A 209 SP--ND-VRVVAEGFD-----FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-----SFDTLVDNISVDP 275 (355)
T ss_dssp CT--TC-CEEEEEEES-----SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSEEEEEEECT
T ss_pred EC--Ce-EEEeecCCc-----ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-----eCCCCCceEEEeC
Confidence 54 22 222222111 268999999999887765 467899999863 322 1222 1245678899999
Q ss_pred -CCCeEEeeeCC
Q 016458 354 -DGSALCTGSWD 364 (389)
Q Consensus 354 -~~~~l~~~~~d 364 (389)
+|.+.+++..+
T Consensus 276 e~G~lwva~~~~ 287 (355)
T 3sre_A 276 VTGDLWVGCHPN 287 (355)
T ss_dssp TTCCEEEEEESC
T ss_pred CCCcEEEEecCC
Confidence 59888777644
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.09 E-value=0.0059 Score=55.88 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=96.4
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEE-eeeccceEEEEEec-CCCEEEEEecCC--eEEEEECCCC
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSDDG--TCRLFDIRTG 282 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~ 282 (389)
..+..+++.+..++++++-+..+.|.+.++... ....+ .........|++.| .|.++++-.... .|...++..
T Consensus 389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~--~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG- 465 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR--SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG- 465 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-
T ss_pred CCcceEEeeccCCeEEEEcCCCCEEEEEECCCC--eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-
Confidence 357889998856777778777889999998633 33333 23345689999999 555444433332 577777653
Q ss_pred ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec-CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
.....+... .....+.+++++++..|+.+.. .+.|..+++.... ...+. ........+|++.. +.++++=
T Consensus 466 ~~~~~l~~~----~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~---~~~~~~P~glav~~-~~ly~tD 536 (628)
T 4a0p_A 466 TEREVLFFS----GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLE---DSNILQPVGLTVFE-NWLYWID 536 (628)
T ss_dssp CSCEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSSCSCEEEEEEET-TEEEEEE
T ss_pred CCcEEEEec----cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEE---cCCCCCcEEEEEEC-CEEEEEE
Confidence 333333221 1224789999998887777754 5789999985433 33332 22234467777764 4444444
Q ss_pred eCCCeeEEeecceecccCc
Q 016458 362 SWDTNLKVNLGFWRVQEGA 380 (389)
Q Consensus 362 ~~dg~i~i~~~~W~~~~~~ 380 (389)
...+.|.. -+..+|+
T Consensus 537 ~~~~~i~~----~~k~~G~ 551 (628)
T 4a0p_A 537 KQQQMIEK----IDMTGRE 551 (628)
T ss_dssp TTTTEEEE----EETTSSS
T ss_pred CCCCeEEE----EECcCCC
Confidence 44556655 5555554
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.09 E-value=0.0015 Score=53.99 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=97.0
Q ss_pred CcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC-----ceEEEeCCCCC
Q 016458 171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS 240 (389)
Q Consensus 171 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 240 (389)
+.+++.|+.+ ..+.+||..+.+-...-.. .....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~- 134 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM----RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN- 134 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCC----CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence 3677777754 3588999988765443311 111112233333 567777777654 4778887754
Q ss_pred cceeEEeeeccc--eEEEEEecCCCEEEEEecC-------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCE
Q 016458 241 RAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (389)
Q Consensus 241 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (389)
....+.....+ -.+++. -++++++.|+.+ ..+.+||+.+.+-...-..... ......+.+ ++++
T Consensus 135 -~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~--~~~i 207 (302)
T 2xn4_A 135 -EWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR---RSGAGVGVL--NNLL 207 (302)
T ss_dssp -EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE--TTEE
T ss_pred -eEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc---cccccEEEE--CCEE
Confidence 12222111111 112222 266777777643 3588999887653332111111 111222222 5677
Q ss_pred EEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCe-----eEEeecceecccCc
Q 016458 312 LFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN-----LKVNLGFWRVQEGA 380 (389)
Q Consensus 312 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~~~~W~~~~~~ 380 (389)
++.|+.+ ..+.+||..+.+-...- ....... .-..+.+ ++++++.|+.++. +.+ ||+.+.+
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~~~ 278 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNMCRR-NAGVCAV--NGLLYVVGGDDGSCNLASVEY----YNPTTDK 278 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEE----EETTTTE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCC-CCCCccc-cCeEEEE--CCEEEEECCcCCCcccccEEE----EcCCCCe
Confidence 7777654 36899998876543321 1111111 1112222 6778888886643 566 7777654
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.08 E-value=0.002 Score=53.33 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=114.7
Q ss_pred eEEEEec--CCcEEEEeCCCCCeeEEE--eeCCCcEEEEEECCCCcEEEEecCC----CcEEEEeCCCCCCCCCCCccee
Q 016458 81 RIVSASQ--DGRLIVWNALTSQKTHAI--KLPCAWVMTCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR 152 (389)
Q Consensus 81 ~l~~~~~--dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~ 152 (389)
+++.|+. ...+.+||..+.+-...- .........+. .++..++.|+.+ ..+.+||..+.. +....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-----W~~~~ 86 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-----WYSKL 86 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-----EEEEE
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-----EEECC
Confidence 4455553 357888998775533221 11111122222 266777777754 568888887643 11111
Q ss_pred eecccccceEEEEEeeCCCcEEEEeeCC------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 153 MLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
.+.........+.+ + +.+++.|+.+ ..+.+||+.+..-...-.. .....-.+++.. ++.+++.|+
T Consensus 87 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG 157 (306)
T 3ii7_A 87 GPPTPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM----LTQRCSHGMVEA--NGLIYVCGG 157 (306)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC----SSCCBSCEEEEE--TTEEEEECC
T ss_pred CCCccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC----cCCcceeEEEEE--CCEEEEECC
Confidence 11111111122222 3 3677777765 4689999988765443211 111112223333 567777776
Q ss_pred C---------CCceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeec
Q 016458 227 C---------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 227 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 290 (389)
. -..+.+||+.+. ....+.....+ -.+++.. ++++++.|+.+ ..+.+||+.+.+-...-..
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 4 345788998754 22222211111 1122222 66777777754 4688999887643322111
Q ss_pred cCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccce
Q 016458 291 QHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAK 330 (389)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 330 (389)
+........+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 235 ---p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 ---PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ---SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ---CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111111233333 66777777754 468899987654
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.05 E-value=0.0024 Score=53.96 Aligned_cols=238 Identities=8% Similarity=0.104 Sum_probs=122.6
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEE---E----eeCCCcEEEEEECCC---CcEEEEec-C------
Q 016458 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA---I----KLPCAWVMTCAFSPT---GQSVACGG-L------ 129 (389)
Q Consensus 67 ~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~------ 129 (389)
-.....|+|.|+|+.|+++...|.|++++.. +..... + .........++++|+ +..|++.. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3457899999999834455567999999843 322111 1 112345789999995 44444432 2
Q ss_pred -CCcEEEEeCCCCCCCCCCCcc-eeeec---ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeCCCC
Q 016458 130 -DSVCSIFNLNSPTDKDGNLPV-SRMLS---GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDITTG 191 (389)
Q Consensus 130 -dg~i~vw~~~~~~~~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 191 (389)
...|..|++............ ...+. ........+.|.|++ .++++.+. .|.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666542110000000 11111 011123568999998 55554433 246777776532
Q ss_pred e------------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC----ceEEEe--------CCC---------
Q 016458 192 L------------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWD--------TRV--------- 238 (389)
Q Consensus 192 ~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d--------~~~--------- 238 (389)
. ....+. .++ .....++|+|..+.++++ .... .|.+.. ...
T Consensus 175 ~p~~npf~~~~~~~~~i~a----~G~-rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS----YGI-RNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE----ECC-SEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE----EcC-cCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 0 011110 122 346788999845555443 3221 222111 000
Q ss_pred -----------CCcceeEEeeeccceEEEEEec-------CCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCe
Q 016458 239 -----------ASRAVRTFHGHEGDVNTVKFFP-------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (389)
Q Consensus 239 -----------~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i 300 (389)
...++..+.. ...+..++|.. ++.++++....+.|...++..++........ ......+
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp 325 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRI 325 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCE
T ss_pred cCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCce
Confidence 0012223332 23567788864 4677777777888888888765433221110 0112258
Q ss_pred eEEEeCCCCCEEEEE
Q 016458 301 TSIAFSISGRLLFAG 315 (389)
Q Consensus 301 ~~~~~~~~~~~l~~~ 315 (389)
..+++.|||.+.++.
T Consensus 326 ~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEECCCCcEEEEE
Confidence 999999999865544
No 316
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.04 E-value=0.004 Score=52.04 Aligned_cols=236 Identities=10% Similarity=0.041 Sum_probs=123.2
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee-ecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
..+.++.|.+.+..+++| ..|.| +...+.++ .+..... .......+..+.+.+ + ..+ .++..+.|.. ..
T Consensus 36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~----tW~~~~~~~~~~~~~~~~i~~~~-~-~~~-~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQ----TWEPRTLVLDHSDYRFNSVSFQG-N-EGW-IVGEPPIMLH-TT 105 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTS----SCEECCCCCSCCCCEEEEEEEET-T-EEE-EEEETTEEEE-ES
T ss_pred CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCC----CCeECCCCCCCCCccEEEEEecC-C-eEE-EEECCCeEEE-EC
Confidence 468899998777777755 46654 33333322 1111111 111244678888875 2 444 4456665544 23
Q ss_pred CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeE-EeeeccceEEEEEecCCCEEEE
Q 016458 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGT 267 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~ 267 (389)
..++.-...... ......+..+.+.+ ++.+++++ .+|.|.. .......... ..+....+..+++.|++.++++
T Consensus 106 DgG~tW~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~--S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (327)
T 2xbg_A 106 DGGQSWSQIPLD--PKLPGSPRLIKALG-NGSAEMIT-NVGAIYR--TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAV 179 (327)
T ss_dssp STTSSCEECCCC--TTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE--ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEE
T ss_pred CCCCCceECccc--cCCCCCeEEEEEEC-CCCEEEEe-CCccEEE--EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEE
Confidence 334333332110 12234567777765 55555554 4554422 2222222222 2334557889999998887776
Q ss_pred EecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCee
Q 016458 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (389)
Q Consensus 268 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 347 (389)
+...+..+-.|- .+..-...... ....+..+.+.+++..+++ +.+|.+++.+...++....+......+...+.
T Consensus 180 g~~G~~~~S~d~-gG~tW~~~~~~----~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 180 SSRGSFYSTWEP-GQTAWEPHNRT----TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp ETTSSEEEEECT-TCSSCEEEECC----SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred ECCCcEEEEeCC-CCCceeECCCC----CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 654433333442 12222222111 1224888999999876654 46787777643335444333210001234588
Q ss_pred EEEECCCCCeEEeeeCCCeeE
Q 016458 348 CLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 348 ~~~~~~~~~~l~~~~~dg~i~ 368 (389)
++++.+++..++++ .+|.+.
T Consensus 254 ~v~~~~~~~~~~~g-~~g~i~ 273 (327)
T 2xbg_A 254 DLAYRTPNEVWLAG-GAGALL 273 (327)
T ss_dssp EEEESSSSCEEEEE-STTCEE
T ss_pred EEEecCCCEEEEEe-CCCeEE
Confidence 99999887766654 466663
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.03 E-value=0.0032 Score=52.03 Aligned_cols=230 Identities=13% Similarity=0.171 Sum_probs=114.9
Q ss_pred CcEEEEecC--CCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC----CeEEEEeCCCCeeE
Q 016458 121 GQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLRT 194 (389)
Q Consensus 121 ~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 194 (389)
+.+++.|+. ...+.+||..+.. +.....+.........+. -+ +.+++.|+.+ ..+.+||+.+..-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~-----W~~~~~~p~~r~~~~~~~--~~-~~lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS-----WTDIRCPFEKRRDAACVF--WD-NVVYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE-----EEECCCCSCCCBSCEEEE--ET-TEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCC-----EecCCCCCcccceeEEEE--EC-CEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 345566654 3568888887643 111111111111112222 23 3677777754 67889999988654
Q ss_pred EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEE
Q 016458 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFG 266 (389)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~ 266 (389)
..-.. . ....-.+++.. ++.+++.|+.+ ..+.+||..+. . ...+.....+ -.+++. -++++++
T Consensus 84 ~~~~~---p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~-~~~~iyv 154 (306)
T 3ii7_A 84 SKLGP---P-TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVE-ANGLIYV 154 (306)
T ss_dssp EEECC---S-SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEE-ETTEEEE
T ss_pred ECCCC---C-ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEE-ECCEEEE
Confidence 44321 1 11111222222 66778887765 45888998764 1 2222111111 111222 2667777
Q ss_pred EEec---------CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceEE
Q 016458 267 TGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKVV 332 (389)
Q Consensus 267 ~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 332 (389)
.|+. -..+.+||+.+.+-...-..... ...-..+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA---RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeEEECCCccch---hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 7764 34588999887643322111111 111122222 66677776653 36899998876533
Q ss_pred EeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceecccCc
Q 016458 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQEGA 380 (389)
Q Consensus 333 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~~~ 380 (389)
.. ... ........++.+ ++++++.|+.++ .+.+ +|+.+.+
T Consensus 230 ~~-~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~----yd~~~~~ 274 (306)
T 3ii7_A 230 MV-SPM-PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILE----YNTETDK 274 (306)
T ss_dssp EC-CCC-SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEE----EETTTTE
T ss_pred EC-CCC-CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEE----EcCCCCe
Confidence 22 111 111112223333 677888888553 4555 7776654
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.00 E-value=0.004 Score=50.72 Aligned_cols=235 Identities=11% Similarity=0.087 Sum_probs=141.7
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee
Q 016458 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (389)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 152 (389)
.-.+|..+.+|.-. ..++.+||+++.+.+...... +.|..-.|-.+..+-++. +..|+-|++.... .+.+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s------~P~k 141 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT--DNAVYHWSMEGES------QPVK 141 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE--SSEEEEEESSTTC------CCEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc--CCcEEEEcccCCC------CCce
Confidence 44577777777665 578999999999999988876 468888887555444433 4579999997622 1334
Q ss_pred eeccc----ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC--CCCc
Q 016458 153 MLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG--SNSR 220 (389)
Q Consensus 153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 220 (389)
.+..| ...|..-..+++..-++++|- -.|.+.+|..+.+.... + .+|......+.... ....
T Consensus 142 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-i-----eGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 142 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-E-----CCSEEEEEEECCTTCSSCEE
T ss_pred eeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce-e-----eeeeeeeEEEecCCCCCCce
Confidence 44333 245555566666544444443 24788899988764433 3 45554443333321 1122
Q ss_pred EEEEeeC---CCceEEEeCCCC---Ccce-----eEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 221 MFVSGSC---DSTARLWDTRVA---SRAV-----RTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 221 ~l~~~~~---dg~i~i~d~~~~---~~~~-----~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
+++.+.. .+.+++.++... ..+. ..+.+ ...-..++..++....++.-+.-|.|++||+.++.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 3333332 268999988543 1111 11111 13345678888888899999999999999999999887
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
.-...... |-..+.+....=+++....|.|.-..++.
T Consensus 296 ~nrIS~d~-----iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 296 MNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEECCSSC-----EEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EeccCCCc-----eEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 76554432 44334333333344444666665555443
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.87 E-value=0.0094 Score=50.67 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=143.9
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCccee
Q 016458 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (389)
Q Consensus 73 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 152 (389)
.-.+|..+.+|.=. ..++.|||+++.+.+..+.... .|..-.|-.+..+-++ + +..|+-|++.... .+.+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T-~taVyHWsi~~~s------~P~k 140 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T-DNAVYHWSMEGES------QPVK 140 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-C-SSEEEEEESSSSC------CCEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-c-CCeeEEecccCCC------Cchh
Confidence 44567777777655 5799999999999998888765 4666677544443333 2 4679999997622 1334
Q ss_pred eeccc----ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC--CCCc
Q 016458 153 MLSGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG--SNSR 220 (389)
Q Consensus 153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 220 (389)
.+..| ...|..-..+++..-++++|- -.|.+.+|..+.+.... + .+|......+.... ....
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-i-----eGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-E-----CCSEEEEEEEECTTCSSEEE
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-h-----eeeeeeeEEEecCCCCCCce
Confidence 44433 345666666666644444442 24788899988764433 3 46655554444432 1122
Q ss_pred EEEEeeC---CCceEEEeCCCC---Ccce--eEE---ee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 221 MFVSGSC---DSTARLWDTRVA---SRAV--RTF---HG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 221 ~l~~~~~---dg~i~i~d~~~~---~~~~--~~~---~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
+++.+.. .+.+++.++... ..+. +.. .+ ...-..++..++....++..+.-|.|.+||+.++.++.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 4444433 378999998643 1111 111 11 12345678889888899999999999999999999887
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (389)
.-...... |-..+......=++.....|.|.-..++..
T Consensus 295 ~nrIs~~~-----iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 295 MNRISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEECCSSC-----EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eecccCCc-----eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 76554332 444444444444444456676665555443
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.86 E-value=0.0019 Score=53.47 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=114.0
Q ss_pred CCCeEEEEecC----CcEEEEeCCCCCeeEEEeeCC--CcEEEEEECCCCcEEEEecC----C-----CcEEEEeCCCCC
Q 016458 78 ERNRIVSASQD----GRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGL----D-----SVCSIFNLNSPT 142 (389)
Q Consensus 78 ~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~----d-----g~i~vw~~~~~~ 142 (389)
++.+++.|+.+ ..+.+||..+.+-...-..+. .....+.+ ++.+++.|+. + ..+.+||..+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666632 368888887654332211111 11122222 6677777775 2 457888887643
Q ss_pred CCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCC-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCC
Q 016458 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
+.....+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-...-.. .....-.+++..
T Consensus 102 -----W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 102 -----WSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM----LTRRIGVGVAVL-- 167 (308)
T ss_dssp -----EEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE--
T ss_pred -----EeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCC----CccccceEEEEE--
Confidence 1111111111111122222 33 667776643 4688999988765443211 111112223333
Q ss_pred CCcEEEEeeCC-----CceEEEeCCCCCcceeEEee---eccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCce
Q 016458 218 NSRMFVSGSCD-----STARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQ 284 (389)
Q Consensus 218 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 284 (389)
++.+++.|+.+ ..+.+||+.+.. ...+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56777877764 458888887541 111111 1111122222 67777777764 4699999887643
Q ss_pred eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC-----CcEEEEEcccceE
Q 016458 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKV 331 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 331 (389)
...-.... .......+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 244 ~~~~~~p~---~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 244 TFVAPMKH---RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EECCCCSS---CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EECCCCCC---CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 32211111 1111122222 56777777654 3578888876543
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.82 E-value=0.0099 Score=49.31 Aligned_cols=227 Identities=9% Similarity=0.052 Sum_probs=112.9
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEee--CCCcEEEEEECCCCcEEEEecC-----C------CcEEEEeCCCCCCCCCC
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKL--PCAWVMTCAFSPTGQSVACGGL-----D------SVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~vw~~~~~~~~~~~ 147 (389)
+++.|+ ..+.+||..+.+-.. ... +.......+...++..++.|+. . ..+.+||..+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE----- 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-----
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-----
Confidence 344555 468999988776432 222 2122333344457788888873 1 126677876633
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCC--------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCC
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (389)
+.....+........ ++.. + +.+++.|+.+ ..+.+||+.+.+-...-. . .....-.+++.. ++
T Consensus 79 W~~~~~~p~~r~~~~-~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~ 149 (315)
T 4asc_A 79 WLGMPPLPSPRCLFG-LGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--L--PYVVYGHTVLSH--MD 149 (315)
T ss_dssp EEECCCBSSCEESCE-EEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--C--SSCCBSCEEEEE--TT
T ss_pred EEECCCCCcchhcee-EEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--C--CCcccceeEEEE--CC
Confidence 111111111111111 1222 3 3677777632 458999998876443221 1 111112223333 56
Q ss_pred cEEEEeeC-C-----CceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecCC-----eEEEEECCCCceee
Q 016458 220 RMFVSGSC-D-----STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQ 286 (389)
Q Consensus 220 ~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 286 (389)
.+++.|+. + ..+.+||+.+.. ...+.....+ -.+++. -++++++.|+.++ .+.+||+.+.+-..
T Consensus 150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 150 LVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp EEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 78888876 2 468889987541 1111111111 112222 2677778887654 58899988764333
Q ss_pred EeeccCCCCCCCCeeEEEeCCCCCEEEEEecC--------------CcEEEEEcccceEE
Q 016458 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVV 332 (389)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~ 332 (389)
.-..... ......+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 227 ~~~~p~~---r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 227 FEAFPQE---RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp ECCCSSC---CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred CCCCCCc---ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 2211111 111122222 56777777653 24678888766543
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.79 E-value=0.0035 Score=61.34 Aligned_cols=268 Identities=10% Similarity=0.179 Sum_probs=153.0
Q ss_pred CCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEe
Q 016458 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV 167 (389)
Q Consensus 88 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (389)
..+|.|.|+.++..+...+.. .-+.-.+|..+.+|.-. ...+.|+|+++.. ......- ..+|.--.|.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnl~~k~-------klks~~~-~e~VvfWkWi 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTM-TDDVTFWKWI 114 (1630)
T ss_pred CceEEEEECCCCCCccccccc---chhhccCCCcceEEEec-CCeEEEeehHHhh-------hhccccc-CCCceEEEec
Confidence 347889998887655332221 22344678888777664 6789999998743 1122111 3456666776
Q ss_pred eCCCcEEEEeeCCCeEEEEeCCCC-eeEEEecCcccCCCCCCeeEEEeeCCCCcEEE-Eee------CCCceEEEeCCCC
Q 016458 168 PDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGS------CDSTARLWDTRVA 239 (389)
Q Consensus 168 ~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~ 239 (389)
... .|+..+ +..|..|++... .+...+... ..-....|..-..++ +.++++ +|- -.|.+.+|....
T Consensus 115 s~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~-~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er- 188 (1630)
T 1xi4_A 115 SLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH-SSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR- 188 (1630)
T ss_pred CCC--eeEEEc-CCeEEEeccCCCCccHHHHhcc-hhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc-
Confidence 643 344333 357999999753 232333111 011245577777777 444444 332 358899998874
Q ss_pred CcceeEEeeeccceEEEEEec---CCCEEEEEec---CCeEEEEECCCC---ceee------EeeccCCCCCCCCeeEEE
Q 016458 240 SRAVRTFHGHEGDVNTVKFFP---DGNRFGTGSD---DGTCRLFDIRTG---HQLQ------VYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~~~~~~~~~~i~~~~ 304 (389)
...+.+.+|-+....+.... ....++.+.. .+.++|.++... .... .+..+. ....-..++.
T Consensus 189 -~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~--~~~Dfpv~~~ 265 (1630)
T 1xi4_A 189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--AQNDFPVAMQ 265 (1630)
T ss_pred -ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc--cccCcceEEE
Confidence 34445566655544433321 1223333322 368999888543 1111 111111 1111245677
Q ss_pred eCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceecccCcccCc
Q 016458 305 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALSPW 384 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~~~ 384 (389)
.++....++.-+.-|.+++||+.++..+..- +-...+|...+-+....-++.....|.|.- -.+.+..++|+
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~----ris~~~iF~~~~~~~~~g~~~vnr~G~vl~----v~v~~~~iv~y 337 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS----VCVEEENIIPY 337 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhc----cccCCceEEeccCCCCCceEEEcCCceEEE----EEEccchhhhh
Confidence 8888888889999999999999999888765 334445554444443333444556777665 66666666665
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.78 E-value=0.013 Score=49.50 Aligned_cols=253 Identities=11% Similarity=0.052 Sum_probs=124.9
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeC---CCcEEEEeeC-------
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSG------- 179 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~------- 179 (389)
.....|+|.|+|+.|+++...|.|++++....... ..................++++|+ +..++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA-PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC-CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee-EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45789999999983444556799999885431100 000000111122345688999985 4344444332
Q ss_pred CCeEEEEeCCCC----eeEEEecCcccC--CCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCCCCC
Q 016458 180 DQTCVLWDITTG----LRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS 240 (389)
Q Consensus 180 dg~i~iwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 240 (389)
...|..|++... .....+...... ........+.|.| ++.++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235767776543 111111101100 1112245799999 6666665433 2456666654320
Q ss_pred -----------cceeEE-eeeccceEEEEEec-CCCEEEEEec-CCeEEEEECCCCcee----eE---------ee----
Q 016458 241 -----------RAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSD-DGTCRLFDIRTGHQL----QV---------YY---- 289 (389)
Q Consensus 241 -----------~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~----~~---------~~---- 289 (389)
.....+ .++. ....++|+| ++.++++-.. ++.=.|.-+..+... .. +.
T Consensus 176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 011122 2333 367899999 5554443221 211122222221110 00 00
Q ss_pred ---cc-CCC----CCCCCeeEEEeCC-------CCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCC
Q 016458 290 ---QQ-HGE----NEIPHVTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (389)
Q Consensus 290 ---~~-~~~----~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 354 (389)
.. ..+ .+......++|.. +|.++++....+.|...++..++.......+ ......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCC
Confidence 00 000 0011356677753 4667777667788888888765543332111 223457999999999
Q ss_pred CCeEEeee-CCCe
Q 016458 355 GSALCTGS-WDTN 366 (389)
Q Consensus 355 ~~~l~~~~-~dg~ 366 (389)
|.++++.. .+|.
T Consensus 334 G~lyv~td~~~g~ 346 (353)
T 2g8s_A 334 GYLYVLTDESSGE 346 (353)
T ss_dssp SCEEEEECSTTEE
T ss_pred CcEEEEEeCCCCE
Confidence 98666433 3443
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.76 E-value=0.0065 Score=50.24 Aligned_cols=187 Identities=7% Similarity=0.072 Sum_probs=95.4
Q ss_pred CcEEEEeeC----C-----CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-----CceEEEeC
Q 016458 171 DTHLITSSG----D-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDT 236 (389)
Q Consensus 171 ~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~ 236 (389)
+.+++.|+. + ..+.+||+.+..-...-.. ..... -.+++.. ++.+++.|+.+ ..+.+||+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRN-RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC---SSCCB-TCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC---CcCcc-ccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence 367777765 2 4688999988764433211 11111 1223333 56777777644 35788888
Q ss_pred CCCCcceeEEee---eccceEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458 237 RVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (389)
Q Consensus 237 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (389)
.+.. ...+.. ....-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-.... .......+.+ +
T Consensus 145 ~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~--~ 215 (308)
T 1zgk_A 145 ERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT---IRSGAGVCVL--H 215 (308)
T ss_dssp TTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEE--T
T ss_pred CCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC---ccccceEEEE--C
Confidence 7541 111111 1111122222 66777777754 458899987764332211111 1111222333 6
Q ss_pred CCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC-----eeEEeecceeccc
Q 016458 309 GRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKVNLGFWRVQE 378 (389)
Q Consensus 309 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~~~~W~~~~ 378 (389)
+++++.|+.+ ..+.+||+.+.+-...- ....... ....+.+ ++++++.|+.++ .+.+ +|+.+
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~----yd~~~ 287 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVA-PMKHRRS-ALGITVH--QGRIYVLGGYDGHTFLDSVEC----YDPDT 287 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECC-CCSSCCB-SCEEEEE--TTEEEEECCBCSSCBCCEEEE----EETTT
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEECC-CCCCCcc-ceEEEEE--CCEEEEEcCcCCCcccceEEE----EcCCC
Confidence 6777777654 46999998876543321 1111111 1122222 577888887654 3445 77766
Q ss_pred Cc
Q 016458 379 GA 380 (389)
Q Consensus 379 ~~ 380 (389)
.+
T Consensus 288 ~~ 289 (308)
T 1zgk_A 288 DT 289 (308)
T ss_dssp TE
T ss_pred CE
Confidence 53
No 325
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.74 E-value=0.031 Score=52.71 Aligned_cols=276 Identities=11% Similarity=0.043 Sum_probs=146.8
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCC
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 147 (389)
..|.++....++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..|+..+..
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~----- 132 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK----- 132 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC-----
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe-----
Confidence 468998877776 566666665 788998765433211111234776654 344 45556555 57788876532
Q ss_pred Ccceeeec-----ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 148 LPVSRMLS-----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 148 ~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
. ..+. .....|.++....++ . +..|+.+ -|..++..++.................|.++...+ ++..|
T Consensus 133 --~-~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~l 205 (758)
T 3ott_A 133 --L-TSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCV 205 (758)
T ss_dssp --E-EEECHHHHCCSCSCEEEEEECTTC-C-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEE
T ss_pred --E-EEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEE
Confidence 1 1110 112457777766655 3 5555554 47788887765433211100001123478887776 44544
Q ss_pred EEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccC---CCCCCCC
Q 016458 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPH 299 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~ 299 (389)
..|+. +-+..+|..+. ............|.++...++|.+.+ |+. +-+.+++..+.... .+.... .......
T Consensus 206 Wigt~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 280 (758)
T 3ott_A 206 WIGTE-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNI 280 (758)
T ss_dssp EEEEE-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSC
T ss_pred EEEEC-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCe
Confidence 44554 45888887654 22111111234588888877776554 444 45788887665432 222111 0112234
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC-cCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
|.++....+|.+-+ |+..| +.++.....-....... ........|.++.-..+|.+.+ |+.+|..+
T Consensus 281 i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~ 347 (758)
T 3ott_A 281 IWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR 347 (758)
T ss_dssp EEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred EEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence 88888888776444 54556 55543322111111100 0012234688998888887554 44555443
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.72 E-value=0.0089 Score=49.59 Aligned_cols=215 Identities=9% Similarity=0.032 Sum_probs=103.2
Q ss_pred EEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC-----C------CeEEEEeCCCC
Q 016458 123 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----D------QTCVLWDITTG 191 (389)
Q Consensus 123 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~ 191 (389)
+++.|+ ..+..||..+.. +.. ..+..............+ +.+++.|+. . ..+..||..+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~-----W~~-~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE-----CYC-ASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEET--TEEEEEETTTTE-----EEE-EECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcC--CceEEECCCCCe-----Eec-CCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 345555 568899987743 111 111111111122222233 367777773 1 23788999887
Q ss_pred eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC--------CceEEEeCCCCCcceeEEeeeccc--eEEEEEecC
Q 016458 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGD--VNTVKFFPD 261 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~ 261 (389)
+-...-. . .....-.+++.. ++.+++.|+.+ ..+.+||..+.. ...+.....+ -.+++. .+
T Consensus 78 ~W~~~~~--~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~ 148 (315)
T 4asc_A 78 EWLGMPP--L--PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HM 148 (315)
T ss_dssp EEEECCC--B--SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ET
T ss_pred eEEECCC--C--CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-EC
Confidence 6533211 1 111111223333 56777777742 458888887541 1111111110 111222 36
Q ss_pred CCEEEEEec-C-----CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCC-----cEEEEEcccce
Q 016458 262 GNRFGTGSD-D-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLAK 330 (389)
Q Consensus 262 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 330 (389)
+++++.|+. + ..+.+||..+.+-...-.... ....-..+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT---ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC---chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 677777776 2 468999988764332211111 1111122222 667777777654 58889987764
Q ss_pred EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCC
Q 016458 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (389)
Q Consensus 331 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 364 (389)
-...- ....... .-..+.+ ++++++.|+.+
T Consensus 224 W~~~~-~~p~~r~-~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 224 WAPFE-AFPQERS-SLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEEC-CCSSCCB-SCEEEEE--TTEEEEEEEEE
T ss_pred EEECC-CCCCccc-ceeEEEE--CCEEEEECCcc
Confidence 33322 1111111 1122222 56777888764
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.64 E-value=0.013 Score=49.81 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=95.5
Q ss_pred CCcEEEEeeCCCceEEEeCCCCCcceeEEeee----ccceEEEEEecCCCEEEEEecCCeEEEEECCCCce---------
Q 016458 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------- 284 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 284 (389)
++.-++.+- ++.||.-++... ...+.+... -..|..+..+|+|.+|+..+. ..|.|..+..+..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~-~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTD-SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTC-SSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCC-CcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 444444433 477888787754 345555543 225788999999999998865 5899998874321
Q ss_pred ---eeEeeccCC-CCCCCCeeEEEeCCC---CCEEEEEecCCcEEEEEcccc--eEEEeecCcC-----CCCCCCeeEEE
Q 016458 285 ---LQVYYQQHG-ENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQ-----NSHEGRITCLG 350 (389)
Q Consensus 285 ---~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~~~v~~~~ 350 (389)
...+..... .....+|..+.|+|- +..|++-..|+.|++||+... ++. .+.... ......|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 112222111 112456999999995 458999999999999999752 122 232110 22336789999
Q ss_pred ECCCCCeEEeee--CCCeeEE
Q 016458 351 LSADGSALCTGS--WDTNLKV 369 (389)
Q Consensus 351 ~~~~~~~l~~~~--~dg~i~i 369 (389)
|.+++-.|...+ ..|.|+-
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEE
Confidence 999888777755 7788764
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.61 E-value=0.065 Score=52.73 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=105.2
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee---CCCCcEEEEee----------CCCceEEEeCCCCCcceeEEee
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS---GSNSRMFVSGS----------CDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
.|++.|..+.+.+..+. ......+.+++.. .....++++|+ ..|.|.+|++...+-.+..-..
T Consensus 808 ~i~lidp~t~~~i~~~~----l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQ----FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEETTTCCEEEEEE----CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEe----CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 46777777666655553 2333445555543 22346888876 3578999998733111112223
Q ss_pred eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc-
Q 016458 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL- 327 (389)
Q Consensus 249 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 327 (389)
.++++++++-- +| +|++|- ...|++|++...+.+..-..... .+..+.....++++++|+.-..|.++..+
T Consensus 884 v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-----~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-----NIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-----CSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-----cEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 46778887754 45 444443 46899999987654441111111 13333333457899999888778776543
Q ss_pred -cceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 328 -LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 328 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..+....-. ..+...++++.+-.++ .++.+..+|.+.+ .+...
T Consensus 956 ~~~~L~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gNl~v----l~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIAR---DFNPNWMSAVEILDDD-NFLGAENAFNLFV----CQKDS 999 (1158)
T ss_dssp TTTEEEEEEE---CCSCBCEEEEEEEETT-EEEEEETTSEEEE----EEECT
T ss_pred CCCeEEEEEe---ecccccEEEEEEEccC-cEEEEcCCCcEEE----EecCC
Confidence 343333322 4455678888887554 6777899999998 66554
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.59 E-value=0.017 Score=49.11 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCC---c--------ceeEEee
Q 016458 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---R--------AVRTFHG 248 (389)
Q Consensus 180 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~--------~~~~~~~ 248 (389)
++.||.-++......+.+.... ...-..+..+..+| ++.+|+..+ +..|.|..+..+. . ..+.+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~-~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSR-HLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTT-TCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred CCEEEEEECCCCCcceEEecCc-ccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3778888877544343432110 01223678899999 888888776 4578888876321 0 1112222
Q ss_pred ------eccceEEEEEec---CCCEEEEEecCCeEEEEECCCCce-eeEeeccC----CCCCCCCeeEEEeCCCCCEEEE
Q 016458 249 ------HEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH----GENEIPHVTSIAFSISGRLLFA 314 (389)
Q Consensus 249 ------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~ 314 (389)
...+|..+.|+| .+..|++-..|+.|++||+..... ...+.... .......+.+++|.+++-.|++
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 246799999999 567899999999999999986321 11221110 0111245899999998877777
Q ss_pred Ee--cCCcEEEE
Q 016458 315 GY--SNGDCYVW 324 (389)
Q Consensus 315 ~~--~dg~i~i~ 324 (389)
.+ .+|.|+-.
T Consensus 197 l~~t~~GDIYAl 208 (452)
T 3pbp_A 197 LNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSCEEEEE
T ss_pred EecCCCCCEEEE
Confidence 55 78888754
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.50 E-value=0.025 Score=47.82 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=68.7
Q ss_pred CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC------CCceEEEeCCCCCcceeEEeeec---c
Q 016458 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHE---G 251 (389)
Q Consensus 181 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~---~ 251 (389)
..+.+||+.+..-...-... ... ..-.+++.. ++.+++.|+. ...+..||+.........+.... .
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p--~~~-~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESP--WYG-TAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCC-CBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCCcEEECCCCC--CCC-cccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 57999999887655442111 111 111333333 5677777764 34577787622212222221111 1
Q ss_pred ceEEEEEecCCCEEEEEecC----------------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCC
Q 016458 252 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
.....+...++++++.|+.+ ..+.+||+.+.+-...-...... ..-.++ ..++
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~--~~~~ 317 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR---AYGVSL--PWNN 317 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC---BSSEEE--EETT
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc---ccceeE--EeCC
Confidence 11111223366777777742 25788998875533322111111 111222 2467
Q ss_pred CEEEEEecCC------cEEEEEcccceEEEee
Q 016458 310 RLLFAGYSNG------DCYVWDTLLAKVVLNL 335 (389)
Q Consensus 310 ~~l~~~~~dg------~i~i~d~~~~~~~~~~ 335 (389)
++++.|+.++ .|.++++++++.....
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 7778887543 3566688777665544
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.49 E-value=0.03 Score=46.43 Aligned_cols=177 Identities=11% Similarity=0.132 Sum_probs=85.4
Q ss_pred CcEEEEeeC----CC-------eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC-------CceE
Q 016458 171 DTHLITSSG----DQ-------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STAR 232 (389)
Q Consensus 171 ~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~ 232 (389)
+.+++.|+. ++ .+..||..+.+-...-.. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL----PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB----SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC----CccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 367777773 12 277889887765433211 111112233333 56777777754 2477
Q ss_pred EEeCCCCCcceeEEeeeccce--EEEEEecCCCEEEEEecC------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEE
Q 016458 233 LWDTRVASRAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (389)
Q Consensus 233 i~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (389)
+||..+. ....+.....+. .+++. .++++++.|+.+ ..+.+||+.+.+-...-..... ......+.
T Consensus 131 ~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~ 204 (318)
T 2woz_A 131 CYDPVAA--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP---RSMFGVAI 204 (318)
T ss_dssp EEETTTT--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEE
T ss_pred EEeCCCC--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC---cccceEEE
Confidence 8888754 112221111110 11222 367777777642 3589999887653332111111 11112222
Q ss_pred eCCCCCEEEEEecC-----CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 305 FSISGRLLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 305 ~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
+ ++++++.|+.+ ..+.+||+.+.+-... ....... ..-..+.+ ++++++.||.++
T Consensus 205 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r-~~~~~~~~--~~~i~v~GG~~~ 264 (318)
T 2woz_A 205 H--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQER-SSISLVSL--AGSLYAIGGFAM 264 (318)
T ss_dssp E--TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCC-BSCEEEEE--TTEEEEECCBCC
T ss_pred E--CCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCcc-cceEEEEE--CCEEEEECCeec
Confidence 2 56777777643 2577899876543322 1111111 11122222 567778877653
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.49 E-value=0.034 Score=46.47 Aligned_cols=245 Identities=15% Similarity=0.145 Sum_probs=128.5
Q ss_pred eeeecccccCcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEe------eCCCcEEEEEECCC---CcEEEEe--
Q 016458 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK------LPCAWVMTCAFSPT---GQSVACG-- 127 (389)
Q Consensus 59 ~~~~l~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~-- 127 (389)
....+...-.....|+|.|+|.++++--..|.|++++..++....... ........|+++|+ +..|++.
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 444444455568899999999877776558999999866555432211 22456899999995 3444432
Q ss_pred -cCCCcEEEEeCCCCCC---C-CCCCcceeeec-ccccceEEEEEeeCCCcEEEEeeC-------------CCeEEEEeC
Q 016458 128 -GLDSVCSIFNLNSPTD---K-DGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSG-------------DQTCVLWDI 188 (389)
Q Consensus 128 -~~dg~i~vw~~~~~~~---~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~ 188 (389)
..++.|.-|.+..... . .....+...+. ........|.|.|++ .++++.+. .|.|.-.+.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 2345566666654211 0 01111111121 111234568999998 55555432 355555565
Q ss_pred CCCe-------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee-CCCceEEEeCCCC-----------------Ccce
Q 016458 189 TTGL-------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVA-----------------SRAV 243 (389)
Q Consensus 189 ~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------~~~~ 243 (389)
...- ....+ ..++. ....++|+| ++.++++-. .++.=.|.-+..+ ..++
T Consensus 182 dG~ip~~nPf~~~~i~----a~G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 182 DGEPAPGNPFPGSPVY----SYGHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp TSSBCTTCSSTTCCEE----EBCCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred CCCccCCCCCCCCeEE----eeCCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 4320 00011 02332 456789998 666655422 2221122111111 1223
Q ss_pred eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCcee---eEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 244 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
..+..+......++|. ++..++..-..+.|....+...... ..+.. .....+..++..|||.++++.
T Consensus 256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~----~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE----GEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST----TTSSCEEEEEEEETTEEEEEE
T ss_pred EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeec----CCCCCccEEEECCCCcEEEEE
Confidence 3333332356777876 4566666556667777776554321 11111 112358899999998765554
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.37 E-value=0.045 Score=45.34 Aligned_cols=229 Identities=11% Similarity=0.108 Sum_probs=111.7
Q ss_pred eEEEEecCCcEEEEeCCCCCeeEEEeeC--CCcEEEEEECCCCcEEEEecC----CC-------cEEEEeCCCCCCCCCC
Q 016458 81 RIVSASQDGRLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGL----DS-------VCSIFNLNSPTDKDGN 147 (389)
Q Consensus 81 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~vw~~~~~~~~~~~ 147 (389)
.++.|+. .+..||..+.+-.. .... ...........++..++.|+. ++ .+.+||..+..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----- 89 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE----- 89 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-----
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-----
Confidence 3444443 37889988776443 2221 122233334457788888873 12 16677776533
Q ss_pred CcceeeecccccceEEEEEeeCCCcEEEEeeCC-------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
+.....+........ ++.. + +.+++.|+.+ ..+.+||+.+.+-...-.. .....-.+++.. ++.
T Consensus 90 W~~~~~~p~~r~~~~-~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~--~~~ 160 (318)
T 2woz_A 90 WVGLPPLPSARCLFG-LGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL----PIKVYGHNVISH--NGM 160 (318)
T ss_dssp EEECSCBSSCBCSCE-EEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC----SSCEESCEEEEE--TTE
T ss_pred EEECCCCCccccccc-eEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC----CCcccccEEEEE--CCE
Confidence 111111111111111 2222 3 3677777754 3588899988765543211 111111222232 667
Q ss_pred EEEEeeC------CCceEEEeCCCCCcceeEEeeeccc--eEEEEEecCCCEEEEEecC-----CeEEEEECCCCceeeE
Q 016458 221 MFVSGSC------DSTARLWDTRVASRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQV 287 (389)
Q Consensus 221 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 287 (389)
+++.|+. -..+.+||+.+. ....+.....+ -.+++. -++++++.|+.+ ..+.+||+.+.+-...
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 7777764 235889998764 12222111111 112222 266777777653 3577899887653332
Q ss_pred eeccCCCCCCCCeeEEEeCCCCCEEEEEecC--------------CcEEEEEcccceEEEe
Q 016458 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSN--------------GDCYVWDTLLAKVVLN 334 (389)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~ 334 (389)
-..... ......+. .++++++.|+.+ ..+.+||+.+.+-...
T Consensus 238 ~~~p~~---r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 238 TEFPQE---RSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCSSC---CBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCCCCc---ccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 111111 11112222 256777776653 3588889877654433
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00086 Score=55.70 Aligned_cols=199 Identities=9% Similarity=0.016 Sum_probs=103.8
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee--CCCCcEEEEe-eCCCceEEEeCCCCCcceeEEee
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHG 248 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~ 248 (389)
.+++.++.||.|.-+|..+|+....+... ...++....-. +.++..++.. +.||.|..++..++ .....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeecc
Confidence 47899999999999999999999988432 11122221100 1123444444 68999999998765 22222211
Q ss_pred e----ccceEE---EEE-e----cCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCC--CeeEEE---e--CCCC
Q 016458 249 H----EGDVNT---VKF-F----PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP--HVTSIA---F--SISG 309 (389)
Q Consensus 249 ~----~~~i~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~i~~~~---~--~~~~ 309 (389)
. ..++.. ... . ..+..+++|+.+|.+...|+++|+.+..+.......... ...+.. + ...+
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 1 111111 000 0 145678999999999999999999998886543211000 000111 1 0124
Q ss_pred CEEEEEecCCcEEEEEcccceEEEeecCcC-CCC--CCCe-eEEEECCCCCeEEeeeCCCeeEEeecceecccCccc
Q 016458 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-NSH--EGRI-TCLGLSADGSALCTGSWDTNLKVNLGFWRVQEGALS 382 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~v-~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~~~~~ 382 (389)
..|+.+..+..+.+.+ ++++ ...+.... ... ..++ .+-..+.|+.+ +.++.||.|.- .|..+|+..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A----~d~~~G~~~ 235 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLA----SDLDFRIAR 235 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEE----ECSTTCCEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEE----EECCCCcEE
Confidence 5677777766666666 3443 22211000 000 0000 00011234555 44677777777 777766654
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.32 E-value=0.024 Score=55.79 Aligned_cols=237 Identities=11% Similarity=0.096 Sum_probs=132.9
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458 75 WTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML 154 (389)
Q Consensus 75 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 154 (389)
.+|..+.+|.=. ..++.|||+++...+..+..+. +|..-.|-.....-+++ +..|.-|++..... +.+.+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~------P~k~f 142 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT--DNAVYHWSMEGESQ------PVKMF 142 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc--CCeEEEeccCCCCc------cHHHH
Confidence 456666666554 5789999999998888877654 47777776544443332 45799999975221 22222
Q ss_pred ccc----ccceEEEEEeeCCCcEEEEee------CCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEee--CCCCcEE
Q 016458 155 SGH----KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMF 222 (389)
Q Consensus 155 ~~~----~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l 222 (389)
..| ...|..-..+++..-++++|- -.|.+.+|..+.+.... + .+|......+... +....++
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-i-----egha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-h-----hHhHhhhheeccCCCCCCceEE
Confidence 222 345666666676644444443 35788888877653321 2 3443333333222 1112233
Q ss_pred EEeeC---CCceEEEeCCCC--C-cc-----eeEEee---eccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEe
Q 016458 223 VSGSC---DSTARLWDTRVA--S-RA-----VRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (389)
Q Consensus 223 ~~~~~---dg~i~i~d~~~~--~-~~-----~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 288 (389)
+.+.. .+.++|.++... + .+ +..+.+ ...-..++..++....+...+.-|.|.+||+.++..+..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 22221 368888888543 1 11 111111 1233456778887788899999999999999999877654
Q ss_pred eccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEE
Q 016458 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (389)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (389)
...... |-..+......-+++....|.|.-..+.....+
T Consensus 297 ris~~~-----iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 297 RISGET-----IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred cccCCc-----eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 433221 333333332223333346666655555444433
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.015 Score=48.25 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=105.2
Q ss_pred CeEEEEecCCcEEEEeCCCCCeeEEEeeCC-CcEEEEEE--CC-CCcEEEEe-cCCCcEEEEeCCCCCCCCCCCcceeee
Q 016458 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAF--SP-TGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRML 154 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~ 154 (389)
..++.++.||.|.-.|..+|+....+.... .++....- .+ ++..++.. +.||.+..++..++.. ......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-----~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-----KLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-----EEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-----Eeeecc
Confidence 378899999999999999999998887651 22222110 01 23334443 5799999998776421 011111
Q ss_pred cc--cccceEE---EEE-----eeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCC--CCeeEEEee----CCC
Q 016458 155 SG--HKGYVSC---CQY-----VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLSVSIS----GSN 218 (389)
Q Consensus 155 ~~--~~~~v~~---~~~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~----~~~ 218 (389)
.. ...++.. ... ... +..+++|+.+|.+...|+.+|+.+..+.......+- ....|.... ...
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHHTTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred ccceeccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 10 1111211 000 002 357899999999999999999999998532111100 000011110 012
Q ss_pred CcEEEEeeCCCceEEEeCCCCCcce-eEEeeeccc-eE-----EEEEecCCCEEEEEecCCeEEEEECCCCceee
Q 016458 219 SRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGD-VN-----TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (389)
Q Consensus 219 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~-i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 286 (389)
+..++.+..+..+.+.+ +++ +.. ..+...... +. .-..+.++.+ +.++.||.|.-+|..++..+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG-~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDG-ASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTS-CCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCC-CeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 34677777777777776 333 211 111110000 00 0001123555 557889999999988888664
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.29 E-value=0.06 Score=44.98 Aligned_cols=241 Identities=11% Similarity=0.085 Sum_probs=125.9
Q ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceee----ecccccceEEEEEeeC---CCcEEEEe--e
Q 016458 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM----LSGHKGYVSCCQYVPD---EDTHLITS--S 178 (389)
Q Consensus 108 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~---~~~~l~~~--~ 178 (389)
.-.....|+|.|+|.++++-...|.|++++...+.. ..... ..........|+++|+ +..+.++- .
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 345678999999999877776689999887654321 11111 1223456789999985 22333321 2
Q ss_pred CCCeEEEEeCCCCe--------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC-------------CCceEEEeCC
Q 016458 179 GDQTCVLWDITTGL--------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTR 237 (389)
Q Consensus 179 ~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~ 237 (389)
.++.|.-|.+..+. ....+. ............+.|.| ++.++++.+. .|.|.-++..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~-~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFR-GIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEE-EECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEE-cCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 45567777665421 111110 01011222356789998 6777776542 3445444544
Q ss_pred CCC---c---ceeE-EeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCcee------------------eEeecc
Q 016458 238 VAS---R---AVRT-FHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL------------------QVYYQQ 291 (389)
Q Consensus 238 ~~~---~---~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~------------------~~~~~~ 291 (389)
..- . .... -.+|.+ ...++|+|++.+.++=. .|+.=.+--+..+... ..+..
T Consensus 183 G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~- 260 (347)
T 3das_A 183 GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST- 260 (347)
T ss_dssp SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-
T ss_pred CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-
Confidence 210 0 1112 224443 46899999877655432 2332222222222110 00000
Q ss_pred CCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
.......++|. +|..+......+.|....+...........+.....+.+.+|+..|||.++++..
T Consensus 261 ----~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 261 ----DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ----TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ----CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 00124567775 4556666666667777777654432111111134457899999999998766643
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.23 E-value=0.014 Score=44.70 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=79.3
Q ss_pred cceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE------EEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceE
Q 016458 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (389)
Q Consensus 159 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (389)
..+.+++|+|++ . |++. .+|.+.-.+..+.... ..+.. .+-. ...++.|.| ++.+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~---~Gw~-~F~a~~fD~-~G~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGN---GGWN-QFQFLFFDP-NGYLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEEC---SCGG-GCSEEEECT-TSCEEEE--ETTEEE
T ss_pred ccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcccccccccEecc---cccc-cceEEEECC-CCCEEEe--CCCEEE
Confidence 367799999976 4 4444 7788777776542111 11100 0111 147888888 7777776 569888
Q ss_pred EEeCCCCCcce-----eEE-eeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec--cCCCCCCCCeeEEE
Q 016458 233 LWDTRVASRAV-----RTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIA 304 (389)
Q Consensus 233 i~d~~~~~~~~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~i~~~~ 304 (389)
-++..+....- ..+ ..-=..+..|.|.|+|.+.++. |+.++-....+.....-+.. ......-.....+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 77754321110 011 1111467999999999877666 77765433332111000000 00000011244566
Q ss_pred eCCCCCEEEEEecCCcE
Q 016458 305 FSISGRLLFAGYSNGDC 321 (389)
Q Consensus 305 ~~~~~~~l~~~~~dg~i 321 (389)
|++++.+.++. +|.+
T Consensus 189 f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp ECTTSCEEEEE--TTEE
T ss_pred ECCCCcEEEEe--CCeE
Confidence 88888776665 6633
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.15 E-value=0.056 Score=45.61 Aligned_cols=198 Identities=10% Similarity=0.040 Sum_probs=93.3
Q ss_pred CCCeEEEEec-C---------CcEEEEeCCCCCeeEEE--e-eCCCcEEEEEECCCCcEEEEecCC--------------
Q 016458 78 ERNRIVSASQ-D---------GRLIVWNALTSQKTHAI--K-LPCAWVMTCAFSPTGQSVACGGLD-------------- 130 (389)
Q Consensus 78 ~~~~l~~~~~-d---------g~v~iw~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d-------------- 130 (389)
++.+++.|+. + ..+.+||..+.+-.... . .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 4566666665 2 46888888775432211 1 1111122222 467888888764
Q ss_pred -------------------------CcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeC------
Q 016458 131 -------------------------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------ 179 (389)
Q Consensus 131 -------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------ 179 (389)
..+.+||..+.. +.....+......-.+++.. + +.+++.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~ 215 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ-----WSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPGLR 215 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE-----EEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETTEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCc-----EEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCCcc
Confidence 468888887633 22222221111110222222 3 366777664
Q ss_pred CCeEEEEeC--CCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC----------------------CceEEEe
Q 016458 180 DQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------------------STARLWD 235 (389)
Q Consensus 180 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d 235 (389)
...+..||+ .+..-...-. ........-.+++.. ++.+++.|+.+ ..+.+||
T Consensus 216 ~~~v~~~d~d~~~~~W~~~~~--~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd 291 (357)
T 2uvk_A 216 TDAVFELDFTGNNLKWNKLAP--VSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL 291 (357)
T ss_dssp CCCEEEEECC---CEEEECCC--SSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred cCceEEEEecCCCCcEEecCC--CCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence 345777887 4443322211 101111111223333 56777877742 2577899
Q ss_pred CCCCCcceeEEeeeccc-eEEEEEecCCCEEEEEecCC------eEEEEECCCCceeeEeec
Q 016458 236 TRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGSDDG------TCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~ 290 (389)
+.+. . ...+.....+ ....+...++++++.|+.++ .|.++++++++.......
T Consensus 292 ~~~~-~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 292 WHNG-K-WDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CC-----CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred cCCC-c-eeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 8754 1 1122111111 11122234678888888543 466678887776655444
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.11 E-value=0.032 Score=42.78 Aligned_cols=180 Identities=10% Similarity=0.051 Sum_probs=95.4
Q ss_pred cEEEEeeCCCeEEEEeCCCCe------eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc----
Q 016458 172 THLITSSGDQTCVLWDITTGL------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---- 241 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 241 (389)
.+|+....| +++.=....+. ....+. ..-=..+..++|+| ++.+.++ .+|.++-.+..+...
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG----~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~ 76 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG----KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWM 76 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE----SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHH
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccC----ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccc
Confidence 456666666 65554444333 112221 11123677999999 8887776 678777766543211
Q ss_pred -ceeEEe-eeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC--CCCCCCeeEEEeCCCCCEEEEEec
Q 016458 242 -AVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYS 317 (389)
Q Consensus 242 -~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~ 317 (389)
.-..+- .--....++.|.|+|.+.++ .||.|+-++-.+...-.-+..... ...-..+..+.|.|+|.+.++.
T Consensus 77 ~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 77 GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 111110 00112478999999987777 669998887543221111100000 0000137899999999877776
Q ss_pred CCcEEEEEcccce------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeE
Q 016458 318 NGDCYVWDTLLAK------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (389)
Q Consensus 318 dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 368 (389)
|+.++-....+.. ....+. ...-..-.-+.|.+++.+.++. +|.+.
T Consensus 153 dg~lyr~~~P~~~~~~wl~~~~~~g---~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 GQQFYKALPPVSNQDNWLARATKIG---QGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEE---SSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCcEEecCCCCCCCcccccccceec---cCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 7775433222110 001110 1222234557799999776665 77554
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.03 E-value=0.13 Score=47.73 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=104.7
Q ss_pred CCCCeEEEEecC----CcEEEEeCCCCCeeEEE-e-----eCC--CcEEEEEECCCCcEEEEecCC------CcEEEEeC
Q 016458 77 SERNRIVSASQD----GRLIVWNALTSQKTHAI-K-----LPC--AWVMTCAFSPTGQSVACGGLD------SVCSIFNL 138 (389)
Q Consensus 77 ~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~-~-----~~~--~~v~~~~~~~~~~~l~~~~~d------g~i~vw~~ 138 (389)
.++..++.|+.+ ..+.+||..+.+-...- . .+. ..-..+.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888898776544332 1 111 122333333277788888754 35778888
Q ss_pred CCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCC--eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeC
Q 016458 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
.+.. +.....+....... +++...++ .+++.|+.++ .+.+||+.+..-...-.............++.+..
T Consensus 476 ~t~~-----W~~~~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTRE-----WSMIKSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTE-----EEECCCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred CCCc-----EEECCCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 7632 11111111111111 22222243 6777887654 69999998876544321000011122223355555
Q ss_pred CCCcEEEEeeCC-------CceEEEeCCCCCc--c--eeEEeee--cc-ceEEEEEecCCCEEEEEecC--------CeE
Q 016458 217 SNSRMFVSGSCD-------STARLWDTRVASR--A--VRTFHGH--EG-DVNTVKFFPDGNRFGTGSDD--------GTC 274 (389)
Q Consensus 217 ~~~~~l~~~~~d-------g~i~i~d~~~~~~--~--~~~~~~~--~~-~i~~~~~~~~~~~l~~~~~d--------g~i 274 (389)
..+.+++.|+.+ ..+..||+.+..- . ...+... .. .-.+++...++++++.|+.+ ..+
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 336788888762 3588899887631 0 1222111 11 11223333337777888743 459
Q ss_pred EEEECCCCcee
Q 016458 275 RLFDIRTGHQL 285 (389)
Q Consensus 275 ~i~d~~~~~~~ 285 (389)
.+||+.+.+-.
T Consensus 629 ~~yd~~t~~W~ 639 (695)
T 2zwa_A 629 ISLDPLSETLT 639 (695)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999876543
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.85 E-value=0.15 Score=41.84 Aligned_cols=140 Identities=6% Similarity=-0.053 Sum_probs=78.4
Q ss_pred EEeeCCCcEEEEeeCC-------------CeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEee--CCC
Q 016458 165 QYVPDEDTHLITSSGD-------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDS 229 (389)
Q Consensus 165 ~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg 229 (389)
-++++++.+.++...+ ..|+..++......... .. . ...+++ .++.|+-.. .++
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~------~~--~--~~~~s~-~g~~Iy~~~~~~~~ 127 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD------PD--P--CIYASL-IGNYIYYLHYDTQT 127 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE------CS--C--EEEEEE-ETTEEEEEEESSSS
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee------cC--C--ccEEEE-eCCEEEEEeecCCC
Confidence 4567775555555443 46888888777644433 11 1 225566 445555444 334
Q ss_pred --ceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec-CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeC
Q 016458 230 --TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (389)
Q Consensus 230 --~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (389)
.|...++. ......+..+.. .+++|+++.|+-.+. ...|...++..+.....+ . .. . ...+.
T Consensus 128 ~~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~--~~-----~-~~~~~ 192 (302)
T 3s25_A 128 ATSLYRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D--CN-----C-YKPVV 192 (302)
T ss_dssp CEEEEEEETT--SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C--SC-----E-EEEEE
T ss_pred CceEEEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C--CC-----c-cceee
Confidence 45555554 334445544432 456788888876654 678888888765543332 1 11 2 23456
Q ss_pred CCCCEEEEEecCC--cEEEEEcccce
Q 016458 307 ISGRLLFAGYSNG--DCYVWDTLLAK 330 (389)
Q Consensus 307 ~~~~~l~~~~~dg--~i~i~d~~~~~ 330 (389)
|++.+|+-...++ .|..-++....
T Consensus 193 P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 193 LDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred ecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 8888888765443 56666665444
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.80 E-value=0.25 Score=45.96 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=101.1
Q ss_pred CCCcEEEEecCC----CcEEEEeCCCCCCCCCCCccee-e-----ecccccceEEEEEee-CCCcEEEEeeCC------C
Q 016458 119 PTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSR-M-----LSGHKGYVSCCQYVP-DEDTHLITSSGD------Q 181 (389)
Q Consensus 119 ~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g 181 (389)
.++..++.|+.+ ..+.+||..+.. +.... . ....... .+++..+ ++ .+++.|+.+ .
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~-----W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~~~~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK-----IDMKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAPHQGLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC-----EEEEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSSTTCBCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe-----EEEeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCCCCccc
Confidence 456666667643 357788876632 11111 1 1111111 2233332 43 677777754 3
Q ss_pred eEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCC--ceEEEeCCCCCcceeEEee------eccce
Q 016458 182 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHG------HEGDV 253 (389)
Q Consensus 182 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~------~~~~i 253 (389)
.+.+||+.+..-...-.. .....-.+++... ++.+++.|+.++ .+.+||..+.. ...+.. .....
T Consensus 469 dv~~yd~~t~~W~~~~~~----p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSL----SHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp CCEEEETTTTEEEECCCC----SBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBS
T ss_pred cEEEEeCCCCcEEECCCC----CCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccce
Confidence 588899988754443211 1111222333323 677888887655 68999987641 112111 11112
Q ss_pred EEEEEecC-CCEEEEEec--C-----CeEEEEECCCCce-----eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEec---
Q 016458 254 NTVKFFPD-GNRFGTGSD--D-----GTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--- 317 (389)
Q Consensus 254 ~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 317 (389)
.++.+..+ +++++.|+. + ..+.+||+.+... -......... ... -.+++...++++++.|+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~-~~~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRY-GSQIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCB-SCEEEEEETTEEEEECCBCSS
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-Ccc-cceEEEeCCCEEEEECCccCC
Confidence 33555554 667777775 2 4589999988761 1111110000 001 112233333677777764
Q ss_pred -----CCcEEEEEcccceEE
Q 016458 318 -----NGDCYVWDTLLAKVV 332 (389)
Q Consensus 318 -----dg~i~i~d~~~~~~~ 332 (389)
...+.+||+.+.+-.
T Consensus 620 ~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CCCCTTTSEEEEETTTTEEE
T ss_pred CCCCCCCeEEEEECCCCeEE
Confidence 346999999877654
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.73 E-value=0.094 Score=45.86 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=64.3
Q ss_pred cceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCC---CCCCCCeeEEEeCCC---CCEEEEEec-------
Q 016458 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---ENEIPHVTSIAFSIS---GRLLFAGYS------- 317 (389)
Q Consensus 251 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~------- 317 (389)
.....++|.|+|+++++-...+.|++++..++........... ......+..++|+|+ +..|++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999998777654445798888665543322211111 012335789999996 555555543
Q ss_pred ------CCcEEEEEcccc-------eEEEe-ecCcCCCCCCCeeEEEECCCCCeEEeeeC
Q 016458 318 ------NGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSW 363 (389)
Q Consensus 318 ------dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 363 (389)
...|.-|++... +.+.. +. .........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---CCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCC---CCCCCCCCeEeECCCCeEEEEECC
Confidence 134555654321 12221 21 122234789999999987777554
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.48 E-value=0.39 Score=41.96 Aligned_cols=112 Identities=8% Similarity=0.001 Sum_probs=60.8
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeec------ccccceEEEEEeeC---CCcEEEEeeC
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------GHKGYVSCCQYVPD---EDTHLITSSG 179 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~l~~~~~ 179 (389)
-.....|+|.|+|+++++-...+.|.+++...+. ......+. .....+..|+|+|+ +..+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-----EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 3457899999999977776554578888754322 11111111 12356779999995 4344444332
Q ss_pred ------------CCeEEEEeCCCC--ee--EEEecCcccCCCCCCeeEEEeeCCCCcEEEEee
Q 016458 180 ------------DQTCVLWDITTG--LR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (389)
Q Consensus 180 ------------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (389)
...|..++.... .. ...+..............++|.| ++.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 235666665432 11 11111001112223478999999 667766644
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.26 E-value=0.47 Score=40.56 Aligned_cols=270 Identities=9% Similarity=-0.022 Sum_probs=122.0
Q ss_pred CcEEEEEEcC-CCCeEEEEecCC----cEEEEeCCCCCeeEEEee--------------CCCcEEEEEECCC--CcEEEE
Q 016458 68 GKVYSLDWTS-ERNRIVSASQDG----RLIVWNALTSQKTHAIKL--------------PCAWVMTCAFSPT--GQSVAC 126 (389)
Q Consensus 68 ~~v~~~~~~~-~~~~l~~~~~dg----~v~iw~~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~~ 126 (389)
..|.+|+++| +...|..++..| .|...+ ..++.-..+.. ....|.++++.|. ...+.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 233444454444 343322 23332222211 1124778999872 455666
Q ss_pred ecCCCcEEEEeCCCCCCCCCCCcceeeec----------------ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 127 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
++..+.|... ..+. ..+....... .....+.+|.+.|..+..++.+..++.|...+- .
T Consensus 134 g~~~ggl~~S--~DgG---~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-g 207 (394)
T 3b7f_A 134 GTSPQGLFRS--TDHG---ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-A 207 (394)
T ss_dssp EEETTEEEEE--SSTT---SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-T
T ss_pred EecCCcEEEE--cCCC---CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-C
Confidence 6555554433 2211 1111111110 112357888888754445566655554544432 2
Q ss_pred CeeEEEecCcccCC--------CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--ec---cceEEEE
Q 016458 191 GLRTSVFGGEFQSG--------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVK 257 (389)
Q Consensus 191 ~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~i~~~~ 257 (389)
++.-..+....... ....+.++.+.|.+...++++...+ |...+-. ......+.. .. ..+.+++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~--G~tW~~~~~~l~~~~~~~~~~i~ 284 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR--EGVWKRIGDAMPREVGDIGFPIV 284 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT--TTEEECGGGGSCTTTCSCEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC--CCcceECCCCCCCCCccceEEEE
Confidence 22222221100000 0135889999986556777776544 4433321 122211111 11 2356788
Q ss_pred Eec-CCCEEEEEec-----------CCeEEEEECCC-CceeeEeeccCCCCCC---CCeeEEEeCCC-CCEEEEEecCCc
Q 016458 258 FFP-DGNRFGTGSD-----------DGTCRLFDIRT-GHQLQVYYQQHGENEI---PHVTSIAFSIS-GRLLFAGYSNGD 320 (389)
Q Consensus 258 ~~~-~~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~~~~~~~~---~~i~~~~~~~~-~~~l~~~~~dg~ 320 (389)
++| +...|.++.. ++...+|...+ ++.-..+......... .....++++|. ...|++++.++.
T Consensus 285 ~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~ 364 (394)
T 3b7f_A 285 VHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE 364 (394)
T ss_dssp ECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC
T ss_pred ECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe
Confidence 876 3344555432 23344555444 3333332211111000 01235778774 345666766665
Q ss_pred EEEEEcccceEEEeecCcCCCCCCCeeEEEEC
Q 016458 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (389)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 352 (389)
|..-+ ..++....+ ..+-..+.+++|.
T Consensus 365 l~~S~-D~G~tW~~~----~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 365 IWASA-DEGEHWQCI----ASHLPHIYAVQSA 391 (394)
T ss_dssp EEEES-STTSBCEEE----ECSCSCEEEEEEE
T ss_pred EEEEC-CCCCCceEc----ccCCCCeeEEEEe
Confidence 54332 334333333 2233456777663
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.04 E-value=0.69 Score=40.48 Aligned_cols=114 Identities=7% Similarity=0.038 Sum_probs=59.4
Q ss_pred CcEEEEEECCCCc-EEEEecCCCcEEEEeCCCCCCCCCCCcceeeec-----ccccceEEEEEeeC---CCcEEEEeeC-
Q 016458 110 AWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-----GHKGYVSCCQYVPD---EDTHLITSSG- 179 (389)
Q Consensus 110 ~~v~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~- 179 (389)
.....|+|.|++. .|+++...|.|++++............+...+. ........|+++|+ +..+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999996 555666789999997543211000000000011 11356788999985 2133333221
Q ss_pred -C----------CeEEEEeCCCC----------eeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeC
Q 016458 180 -D----------QTCVLWDITTG----------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 180 -d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
+ ..|.-|.+..+ +.+..+.. .........|.|.| ++.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgp-DG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGP-DGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECT-TSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECC-CCcEEEEeCC
Confidence 1 14545655421 22222211 12223467899999 6777666554
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.95 E-value=0.51 Score=38.20 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=115.4
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 148 (389)
.|..++..... .++. . ||.|..|-......+.........|..++....... +. . ||.|..|-.........
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~-~l-~-~G~v~~wG~n~~Gqlg~-- 96 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSL-AL-K-DGEVIAWGGNEDGQTTV-- 96 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEE-EE-E-TTEEEEEECCTTSTTCC--
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEE-EE-E-CCEEEEeeCCCCCCCCC--
Confidence 46777765442 2333 4 899999965432222111111234666665543333 33 4 89999997665321111
Q ss_pred cceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCC
Q 016458 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (389)
+ . .-...|..++.... ..+.-. +|.|..|-......+... ......|..++... ...++. . |
T Consensus 97 P--~---~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~~G~--~~~~~l-~-~ 158 (282)
T 3qhy_B 97 P--A---EARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALDGGV--YTALAV-K-N 158 (282)
T ss_dssp C--G---GGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEEECS--SEEEEE-E-T
T ss_pred C--c---ccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEEccc--CEEEEE-E-C
Confidence 1 0 01235666665542 334445 999999976543222111 12334577776643 233333 3 7
Q ss_pred CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC
Q 016458 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (389)
Q Consensus 229 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (389)
|.|+.|-.....+.- ........|..++...+ ..++. .||.|+.|-......+..-. .....|..++-...
T Consensus 159 G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~ 229 (282)
T 3qhy_B 159 GGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGEW 229 (282)
T ss_dssp TEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECSS
T ss_pred CEEEEecCCCCCCCC-CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc-----ccCCCceEEEcCCC
Confidence 999999766542221 11112345777766433 23333 69999999865533322111 11123677765443
Q ss_pred CCEEEEEecCCcEEEEEcccc
Q 016458 309 GRLLFAGYSNGDCYVWDTLLA 329 (389)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~ 329 (389)
. .++.. ||.|+.|-....
T Consensus 230 h-~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 230 Y-SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp C-EEEEE--TTEEEEESTTCC
T ss_pred E-EEEEE--CCEEEEecCCCC
Confidence 3 33333 899999976543
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.50 E-value=0.37 Score=42.66 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=75.3
Q ss_pred ceEEEeCCCC---CcceeEEeeeccceEEEEEecCCCEEEEEe-cCCeEEEEECCCCce-----e----eEeeccCCCCC
Q 016458 230 TARLWDTRVA---SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ-----L----QVYYQQHGENE 296 (389)
Q Consensus 230 ~i~i~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-----~----~~~~~~~~~~~ 296 (389)
.+.+.|.+.. ...+..+-+-......+.++|||+++++++ .+.++.++|++.... + ..... . ...
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e-~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-E-PEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-C-CBC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-e-ccC
Confidence 3566666641 123333334455667899999999988776 578999999874211 0 00000 0 011
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCcEEEEEcccc----------eEEEeecCcCCCCCCCeeEEE------ECCCCCeEEe
Q 016458 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----------KVVLNLGSLQNSHEGRITCLG------LSADGSALCT 360 (389)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~ 360 (389)
.......+|.++|+...+-.-|..|.-|++... ..+..+ ..|-. +-.+. -.+||++|++
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~----dv~Yq-pGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKL----DVHYQ-PGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE----ECSSC-EEEEEETTTTSTTCCSCEEEE
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecc----ccccC-CcccccCCCccCCCCccEEEE
Confidence 123678899999955555568999999998754 344444 23322 22222 2468888888
Q ss_pred ee
Q 016458 361 GS 362 (389)
Q Consensus 361 ~~ 362 (389)
..
T Consensus 452 ln 453 (638)
T 3sbq_A 452 LS 453 (638)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.45 E-value=0.81 Score=37.00 Aligned_cols=222 Identities=12% Similarity=0.034 Sum_probs=114.3
Q ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCC
Q 016458 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (389)
Q Consensus 111 ~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 190 (389)
.|..++...... ++. . ||.|..|-........ .+. .....|..++.... ..++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg--~p~-----~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLT--MPA-----ATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTS--CCG-----GGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCC--CCc-----cCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence 466666543322 233 4 8999999766532111 011 11235666655442 33444 4 89999997654
Q ss_pred CeeEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEec
Q 016458 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 270 (389)
.-.+.. + ......|..++... ...++ -. +|.|+.|-.....+.- ........|..++...+ ..+.-.
T Consensus 91 ~Gqlg~-P----~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~- 157 (282)
T 3qhy_B 91 DGQTTV-P----AEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK- 157 (282)
T ss_dssp TSTTCC-C----GGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-
T ss_pred CCCCCC-C----cccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-
Confidence 322211 1 11234677777763 23333 34 9999999766542221 11112345766665433 333334
Q ss_pred CCeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecCcCCCCCCCeeEEE
Q 016458 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 350 (389)
Q Consensus 271 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 350 (389)
||.|..|-......+..-.. ....|..++..... .++. .||.|+.|-......+..- ......|..++
T Consensus 158 ~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~ 225 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPAE-----AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVP----TEALSGVSAIA 225 (282)
T ss_dssp TTEEEEEECCTTSTTSCCGG-----GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCC----GGGGSSCCEEE
T ss_pred CCEEEEecCCCCCCCCCcee-----cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCC----cccCCCceEEE
Confidence 79999998665332221100 11237777654332 3333 5999999976542222111 11223577777
Q ss_pred ECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 351 LSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 351 ~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
-..+- .++. . ||.+.. |-...
T Consensus 226 ~G~~h-~~al-~-~g~v~~----wG~n~ 246 (282)
T 3qhy_B 226 SGEWY-SLAL-K-NGKVIA----WGSSR 246 (282)
T ss_dssp ECSSC-EEEE-E-TTEEEE----ESTTC
T ss_pred cCCCE-EEEE-E-CCEEEE----ecCCC
Confidence 55432 3333 3 888888 86654
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.44 E-value=0.87 Score=37.25 Aligned_cols=177 Identities=6% Similarity=-0.016 Sum_probs=96.9
Q ss_pred EEEcCCCCeEEEEecC--------------CcEEEEeCCCCCeeEEEeeCCCcEEEEEECCCCcEEEEec--C--CCcEE
Q 016458 73 LDWTSERNRIVSASQD--------------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG--L--DSVCS 134 (389)
Q Consensus 73 ~~~~~~~~~l~~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--dg~i~ 134 (389)
--+++++++|+-+... ..|+..++..++... +... . ...|+++++.|+-.. . +..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457788887766543 357777776665433 2222 1 225677888888765 3 34455
Q ss_pred EEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCCCCCCeeEEEe
Q 016458 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (389)
Q Consensus 135 vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (389)
..+++... ...+..+.. ..++++++.++.+......|.+.++..+.....+ .. ... ..+
T Consensus 133 ~~~~dGs~--------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-----~~---~~~-~~~ 191 (302)
T 3s25_A 133 RIRIDGEE--------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-----DC---NCY-KPV 191 (302)
T ss_dssp EEETTSCC--------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-----CS---CEE-EEE
T ss_pred EEECCCCC--------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-----CC---Ccc-cee
Confidence 55555322 122222222 3467777665656555788999998877655444 21 112 235
Q ss_pred eCCCCcEEEEeeCC--CceEEEeCCCCCcceeEEeeeccceEEEEEecCCCEEEEEe--cCCeEEEEECCCC
Q 016458 215 SGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTG 282 (389)
Q Consensus 215 ~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~ 282 (389)
.| .+..|+-...+ ..|..-++... ....+. ...+ ..|+|++.+|+-+. ..+.|..-++...
T Consensus 192 ~P-~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 192 VL-DDTNVYYMDVNRDNAIVHVNINNP--NPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EE-ETTEEEEEEGGGTTEEEEECSSSC--CCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred ee-cCCEEEEEEcCCCcEEEEEECCCC--CeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 57 44455444433 34555555533 233333 2233 34788888887653 3456777776543
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.22 E-value=1.3 Score=37.86 Aligned_cols=280 Identities=10% Similarity=-0.023 Sum_probs=125.8
Q ss_pred CeEEEEecCCcEEEEeCCC-CCeeEEE--eeCCCcEEEEEECC-CCcEEEEecCCC--cEEEEeCCCCCCCCCCCcceee
Q 016458 80 NRIVSASQDGRLIVWNALT-SQKTHAI--KLPCAWVMTCAFSP-TGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRM 153 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~ 153 (389)
..|..|+..| +.+++... +..-... ......|.++++.| +...+.+++..| .-.||...... ..+.....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G---~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGG---GNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTT---SCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCC---CCceECCc
Confidence 3677777776 55555433 2222222 23345799999998 334444444444 01233322211 01111110
Q ss_pred ---ecc--------cccceEEEEEeeCC-CcEEEEeeCCCeEEEEeCCCCeeEEEecCcc--c------------CCCCC
Q 016458 154 ---LSG--------HKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEF--Q------------SGHTA 207 (389)
Q Consensus 154 ---~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~------------~~~~~ 207 (389)
+.. ....|.++++.|.+ +..+++++..+.|...+-. +..-..+.... . .....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence 110 12357788888743 3556776666666555322 22222221000 0 01224
Q ss_pred CeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcceeEEee--e-----------ccceEEEEEecC-CCEEEEEecCCe
Q 016458 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--H-----------EGDVNTVKFFPD-GNRFGTGSDDGT 273 (389)
Q Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----------~~~i~~~~~~~~-~~~l~~~~~dg~ 273 (389)
.+.++.+.|.+...++.+..++.|...+ ........+.. . ...+.++.++|+ ...|+++...+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~--DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST--DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES--STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC--CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 5788999875444455554444444332 22222222210 0 124788999985 45677666544
Q ss_pred EEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCC-CCEEEEEec-----------CCcEEEEEccc-ceEEEeecC-cC
Q 016458 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYS-----------NGDCYVWDTLL-AKVVLNLGS-LQ 339 (389)
Q Consensus 274 i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~-~~ 339 (389)
|...+ ..++.-..+...........+..++++|. ...|+++.. ++...+|.... ++....+.. +.
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 44443 22333322221111100023567888763 344444432 33345565443 333222211 00
Q ss_pred CCCC---CCeeEEEECCC-CCeEEeeeCCCeeE
Q 016458 340 NSHE---GRITCLGLSAD-GSALCTGSWDTNLK 368 (389)
Q Consensus 340 ~~~~---~~v~~~~~~~~-~~~l~~~~~dg~i~ 368 (389)
.... .....++++|. ...|+.++.++.|.
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 1000 01246788874 45566666566554
No 353
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.28 E-value=0.066 Score=47.17 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=64.4
Q ss_pred CCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc-----------ceeEEeeeccceEEEEEecCCCEEEEEecCCeEE
Q 016458 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 275 (389)
.....+.++|+....++.|-.+.++.++|++.... .+..-..-.-.....+|.++|....+..-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 34566788884444455556688999999874211 1111111233467899999996666677899999
Q ss_pred EEECCCC----------ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEe
Q 016458 276 LFDIRTG----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (389)
Q Consensus 276 i~d~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (389)
.|++... ..+..+..+....|......-.-.++|++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9998653 3344444443322211001112257888888865
No 354
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=91.94 E-value=0.51 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
+++..+.++....++|++..++++.+.+-
T Consensus 2 ekiaaikeeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888889999888888877654
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.90 E-value=6 Score=34.57 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCC-eEEEEecCCcEEEEeCCCC---CeeEEEe---e------CCCcEEEEEECCC
Q 016458 68 GKVYSLDWTSERN-RIVSASQDGRLIVWNALTS---QKTHAIK---L------PCAWVMTCAFSPT 120 (389)
Q Consensus 68 ~~v~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~---~~~~~~~---~------~~~~v~~~~~~~~ 120 (389)
..-..|+|.|++. .|+++...|.|++++.... ..+..+. . .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567999999996 5666678899999975322 1222221 0 1346789999996
No 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=91.90 E-value=8.6 Score=36.36 Aligned_cols=157 Identities=6% Similarity=-0.010 Sum_probs=76.4
Q ss_pred cCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEeeC-------CCcEEEEEECCC-CcEEEEecCCCc----E
Q 016458 67 AGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLP-------CAWVMTCAFSPT-GQSVACGGLDSV----C 133 (389)
Q Consensus 67 ~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~~~~~dg~----i 133 (389)
.+.|.+|+++|.. ..+++++..+.|...+ ..++.-..+..+ ...+.++++.|. ...++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4589999999953 4666677666665544 334333333221 235999999984 344444432211 3
Q ss_pred EEEeCCCCCCCCCCCcceee-ec-----ccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCccc-CCCC
Q 016458 134 SIFNLNSPTDKDGNLPVSRM-LS-----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHT 206 (389)
Q Consensus 134 ~vw~~~~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~ 206 (389)
.||....+. ..+..... +. .....+..+++.|..+..++.+...+.|.. ....++.-........ ....
T Consensus 93 ~v~~S~DgG---~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRG---QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESSTT---SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred EEEEECCCC---CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 344333211 11111110 00 001134567777765456666664443321 2222333222211000 0112
Q ss_pred CCeeEEEeeCCCCcEEEEeeCC
Q 016458 207 ADVLSVSISGSNSRMFVSGSCD 228 (389)
Q Consensus 207 ~~v~~~~~~~~~~~~l~~~~~d 228 (389)
..+..+.++|.+...++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 4578889988666666666654
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.89 E-value=5.2 Score=33.80 Aligned_cols=175 Identities=9% Similarity=0.085 Sum_probs=96.4
Q ss_pred CeEEEEeCCCC--eeEEEecCcc-cCCCCCCeeEEEee---CC---CCcEEEEee-CCCceEEEeCCCCCcceeEEe---
Q 016458 181 QTCVLWDITTG--LRTSVFGGEF-QSGHTADVLSVSIS---GS---NSRMFVSGS-CDSTARLWDTRVASRAVRTFH--- 247 (389)
Q Consensus 181 g~i~iwd~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~---~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--- 247 (389)
-.|.+||+.+. +.+..+.... .......+..+.+. |. ++.++..+. ..+.|.++|+.++ +..+...
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~-~swRv~~~~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ-DSWNVTHPTF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT-EEEEEECGGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC-cEEEEccCCC
Confidence 35778888888 7777764321 12234567888887 21 134444443 4678999999876 3322221
Q ss_pred -----------ee----ccceEEEEEecC----CCEEEEEecCCeEEEEECC-----CCc---eeeEeeccCCCCCCCCe
Q 016458 248 -----------GH----EGDVNTVKFFPD----GNRFGTGSDDGTCRLFDIR-----TGH---QLQVYYQQHGENEIPHV 300 (389)
Q Consensus 248 -----------~~----~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~---~~~~~~~~~~~~~~~~i 300 (389)
+. ...+..++++|+ ++.|+-....+. ++|.+. ... .+..+-. .+ ....-
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-kg--~~s~~ 277 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-RG--KYNDA 277 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-CC--TTCCE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-cC--CCCCc
Confidence 11 236788999987 677776665442 333332 221 1111111 11 01123
Q ss_pred eEEEeC-CCCCEEEEEecCCcEEEEEccc-c---eEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 301 TSIAFS-ISGRLLFAGYSNGDCYVWDTLL-A---KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 301 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
..+++. .+|.++++--..+.|..|+..+ . .....+.. ...-..+..+.+.++|.+.+..+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~--d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT--SSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE--CTTCCSEEEEEECTTSCEEEEEC
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE--CCCccccCeEEECCCCeEEEEEC
Confidence 456775 5777777777788999999865 1 11122210 12333577888877776555543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.35 E-value=14 Score=35.88 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCEEEEEecCCeEEEEECCCCceeeEeec
Q 016458 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (389)
Q Consensus 252 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 290 (389)
.+.+++..++..++++-+.|+++++|++.+++++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467777888888999999999999999999988877643
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.98 E-value=7 Score=31.95 Aligned_cols=242 Identities=10% Similarity=0.032 Sum_probs=121.3
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCeeE---------EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CCCC
Q 016458 77 SERNRIVSASQDGRLIVWNALTSQKTH---------AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDK 144 (389)
Q Consensus 77 ~~~~~l~~~~~dg~v~iw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~ 144 (389)
|+...+++.+.+|.|+--.+.+-+... .+.. ...+..+........++..+..|.++-+.... ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999877654422211 1122 23344444444556677777788766555432 2111
Q ss_pred CCCCcceeeec-ccccceEEEEEee--CCCcEEEEeeCCCeEEEEeCCCCee-----EEEecCcccCCCCCCeeEEEeeC
Q 016458 145 DGNLPVSRMLS-GHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADVLSVSISG 216 (389)
Q Consensus 145 ~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~ 216 (389)
..-.+....+. .....|..+...+ +.+.+++..+..|.++...+..-.. ...+. ....+.+..+....
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~----l~~~d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK----LVDGDELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC----CCTTCCEEEEEEEC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE----ECCCCEEEEEEEeC
Confidence 11111111111 1233455554432 2235788999999999987642111 11110 11225566655554
Q ss_pred CCCcEEEEeeCCCceEEEeCCCCC---c---ce--eEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce----
Q 016458 217 SNSRMFVSGSCDSTARLWDTRVAS---R---AV--RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ---- 284 (389)
Q Consensus 217 ~~~~~l~~~~~dg~i~i~d~~~~~---~---~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 284 (389)
+...++..+.+|.+..++...-. . -+ ..+. ....|.++...+++..+++.+..|.++-.++.....
T Consensus 156 -~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 156 -GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp -TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred -CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 44556677788888877764321 1 11 1121 234566665555566788889999988887643211
Q ss_pred ---eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 285 ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 285 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
...+.. ......+..+....+...++..+.+|.+.-++...
T Consensus 234 ~kG~~~~~~---~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 234 TKGVISIKV---TERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCEESSCC---CTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCCEEeeEe---cCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 111111 01112344443333344555666777766666543
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.88 E-value=7.4 Score=32.12 Aligned_cols=242 Identities=8% Similarity=0.026 Sum_probs=125.5
Q ss_pred CeEEEEecCCcEEEEeCCCC-------CeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEe---CCCCCCCCCCC
Q 016458 80 NRIVSASQDGRLIVWNALTS-------QKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNL 148 (389)
Q Consensus 80 ~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~ 148 (389)
..+++.+.+|.|+--.+.+- .-...+.. ....+..+........|+.-+..|.++-.. +........-.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 46778888888886543221 11111111 123455554444555666666677765544 33221111111
Q ss_pred cceeeec-ccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCeeEE---EecCcccCCCCCCeeEEEeeCCCCcEE
Q 016458 149 PVSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTS---VFGGEFQSGHTADVLSVSISGSNSRMF 222 (389)
Q Consensus 149 ~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (389)
+....+. .....|..+...++ .+.+++..+.+|.++...+....... ..... ....+.+..+.... ....+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~--lke~D~lv~~~~~~-~~d~i 160 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN--LRDNDELVGAVLCS-AGDDL 160 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB--CCTTCCEEEEEEEC-TTCEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE--ECCCCEEEEEEEec-CCCEE
Confidence 1111111 12345555544442 24689999999999998865422111 00000 12345566665554 44567
Q ss_pred EEeeCCCceEEEeCC--CCC---c-----ceeEEeeeccceEEEEEecCCCEEEEEecCCeEEEEECCCCce-------e
Q 016458 223 VSGSCDSTARLWDTR--VAS---R-----AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-------L 285 (389)
Q Consensus 223 ~~~~~dg~i~i~d~~--~~~---~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~ 285 (389)
+..+..|.+..+... .-. . ....+. ....|.++...+++..++..+..|.++.-.+..... .
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 777888988887766 221 1 111121 234566666666677899999999999887654222 1
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
..+.... ....+..+....+...++..+.+|.+.-++...
T Consensus 240 ~~~~l~~---~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 240 LTVMYDR---RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ESSCCCT---TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEecC---CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1121111 011244444444455677777888888787643
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=89.61 E-value=14 Score=34.93 Aligned_cols=159 Identities=10% Similarity=0.076 Sum_probs=82.3
Q ss_pred ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCCCc----e
Q 016458 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDST----A 231 (389)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~----i 231 (389)
.+.|.+|.++|..+..+++++..+.|...+= .++.-..+....... ....+.++++.|.+.+.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999987778888888787766552 333333321100000 13469999999855565655543322 3
Q ss_pred EEEeCCCCCcceeEEeee-------c--cceEEEEEecC-CCEEEEEecCCeEEEEECCCCceeeEeeccCC-CCCCCCe
Q 016458 232 RLWDTRVASRAVRTFHGH-------E--GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHV 300 (389)
Q Consensus 232 ~i~d~~~~~~~~~~~~~~-------~--~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~i 300 (389)
.||-.....+.-...... . ..+..++++|. ...++.+...+.|. .....++.-........ ......+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433333333210 0 13456888873 45666666444332 22222332222221100 0011347
Q ss_pred eEEEeCCC-CCEEEEEecC
Q 016458 301 TSIAFSIS-GRLLFAGYSN 318 (389)
Q Consensus 301 ~~~~~~~~-~~~l~~~~~d 318 (389)
..+.++|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88999884 4466666554
No 362
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=89.12 E-value=0.83 Score=20.30 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
+.++.++...+++|+..++-++.+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4567777777777777777776654
No 363
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.09 E-value=1.2 Score=21.78 Aligned_cols=31 Identities=3% Similarity=0.124 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++|.+|+.+.+++-.+...|+.+....+.-+
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4678888888888888888888887776543
No 364
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.04 E-value=1.2 Score=22.17 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++|.||+.+.+++..+...|+.+...++..+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3567777777777777777777776666543
No 365
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.91 E-value=1.2 Score=21.72 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
+|.+|+++.+++..+...|+.+...++.-
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777777777777777777666554
No 366
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.84 E-value=1 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
+.++.|+.+..+++.++..|.++.++.+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999887765
No 367
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.69 E-value=1.3 Score=21.71 Aligned_cols=31 Identities=6% Similarity=0.199 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++|.+|+++.+.+-.+-+.|+.+...++.-+
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4678888888888888888888877776543
No 368
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=88.43 E-value=1.1 Score=20.73 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
.+..+.+++..++.|+..++-++.++++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777777777666654
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.29 E-value=14 Score=35.76 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.3
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEec
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 198 (389)
.+.++...++. .++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45666666654 689999999999999999999888764
No 370
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=87.31 E-value=1.6 Score=21.22 Aligned_cols=30 Identities=3% Similarity=0.189 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+|.||+.+.+++-.+...++.++...+.-+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467888888888888888888877776543
No 371
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=87.13 E-value=20 Score=33.62 Aligned_cols=110 Identities=9% Similarity=0.024 Sum_probs=61.9
Q ss_pred ceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecCcccCC--CCCCeeEEEeeCCCCcEEEEeeCC-------Cc
Q 016458 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCD-------ST 230 (389)
Q Consensus 160 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-------g~ 230 (389)
.|..|+++|.++..++++...+.|...+-.. +.-..+....... ....+.+++++|.+.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G-~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPST-ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTT-TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCC-CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7899999998767788888777776665333 3222221100000 124689999998665555554421 12
Q ss_pred eEEEeCCCCCcceeEEee-ec--------cceEEEEEecC-CCEEEEEec
Q 016458 231 ARLWDTRVASRAVRTFHG-HE--------GDVNTVKFFPD-GNRFGTGSD 270 (389)
Q Consensus 231 i~i~d~~~~~~~~~~~~~-~~--------~~i~~~~~~~~-~~~l~~~~~ 270 (389)
..||......+....... .. ..+..++++|. ...++.+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 456655544344433321 11 12467999984 456666653
No 372
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=87.08 E-value=1.4 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
.+.+|+++..+++.|.-+|+++..++.-
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4788999999999999999988877653
No 373
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=86.73 E-value=0.41 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 6 SELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
-+++.+.+.+++.+..++.+++...+.+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777766544
No 374
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=86.35 E-value=1.5 Score=19.99 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
-|.++++...++..++.++.++++..
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999998887763
No 375
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=86.29 E-value=3.2 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=32.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVDVAGY 41 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (389)
|+.+|.|++++.++.+...+|+.+-.-+|.......+..+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~ 53 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKF 53 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6889999999999999999999988888776555544443
No 376
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.22 E-value=1.6 Score=21.63 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+|.||+.+.+++..+...|+.+...++..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 566777777777777777777666665543
No 377
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=84.81 E-value=1.7 Score=19.30 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 6 SELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
+.++-+.+.+++.+..+++++...
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 345555555666666666655544
No 378
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.47 E-value=2.4 Score=20.78 Aligned_cols=31 Identities=6% Similarity=0.247 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++|.+|+.+.+.+-.+-..++.+....+.-+
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3677888888888777777777777766543
No 379
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.17 E-value=2.5 Score=20.73 Aligned_cols=30 Identities=7% Similarity=0.310 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+|.+|+++-+++-.+...|+++....+.-+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 567788888888887888887777776543
No 380
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.17 E-value=15 Score=29.47 Aligned_cols=202 Identities=9% Similarity=0.044 Sum_probs=110.1
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEE---eCCCCCeeEEEeeCCCcEEEEEECC-CCcEEEEecCCCcEEEEeCCCCCCC
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVW---NALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDK 144 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw---~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~ 144 (389)
.+..+.-......|+.-+.+|.++-- ++..+.... +-...+.|..+.... +..+++..+.+|.++-..+..-. .
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-Y 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-T
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-h
Confidence 56555555555567667777877643 332221111 222345566664421 46789999999999999876532 1
Q ss_pred CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCee-------EEEecCcccCCCCCCeeEEEeeCC
Q 016458 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-------TSVFGGEFQSGHTADVLSVSISGS 217 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~ 217 (389)
...-.....+. ..+.+..+...... ..++..+..|.+..++...-.. ...+. ......|..+...+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~----L~~~d~vv~~~~~~- 175 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIK----LEKNDETSGLRIWN- 175 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC----CCTTCCEEEEEEES-
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc----cCCCCEEEEEEEeC-
Confidence 11111111122 23455555554443 5688888999988887532111 11110 12335666666655
Q ss_pred CCcEEEEeeCCCceEEEeCCCCC------cceeEEeeeccceEEEEEecCCCEEEEEecCCeEEE--EECC
Q 016458 218 NSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIR 280 (389)
Q Consensus 218 ~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~ 280 (389)
++..++..+..|.++...+.... +-+..+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 45677888899998888764321 112222 22334444433333445666777777777 7654
No 381
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=83.91 E-value=3.4 Score=21.98 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=20.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
+++-+++++|+..++.+++.+.+.+++
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888888888888888777654
No 382
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.75 E-value=2.6 Score=20.49 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+|.+|+.+.+++-.+-..|+.+....+.-+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466777777777777777777777666543
No 383
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=83.66 E-value=0.75 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.+.++.+++++..++.+.+.++++.......+
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999998887665
No 384
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.62 E-value=2.1 Score=26.46 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (389)
.+++|++.....+.++..|..++..+.+++....
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777777777777665544
No 385
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.86 E-value=5.9 Score=35.78 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=42.4
Q ss_pred CeeEEEeCCCCCEEEEEecC------------CcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEee
Q 016458 299 HVTSIAFSISGRLLFAGYSN------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (389)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 361 (389)
..-.|+|+|.|+++++-..+ +.+.+.+..+++....+. ......++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~---~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE---CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe---CCCCccCcCeeECCCCCEEEEE
Confidence 35679999999976664432 235666666777665553 3345789999999999988765
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=80.86 E-value=22 Score=29.23 Aligned_cols=244 Identities=7% Similarity=0.016 Sum_probs=123.1
Q ss_pred CCCCeEEEEecCCcEEEEeCCCC----CeeEEEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CCCCCCCCc
Q 016458 77 SERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTDKDGNLP 149 (389)
Q Consensus 77 ~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~ 149 (389)
|+...+++.+.+|.|+--.+..- .....+.. ...+..+........++..+..|.++-+.... ......-.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56678889999999987654311 11111222 23455554545566677777788766555432 111111111
Q ss_pred ceeeec-ccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee------EEEecCcccCCCCCCeeEEEeeCCCCc
Q 016458 150 VSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR------TSVFGGEFQSGHTADVLSVSISGSNSR 220 (389)
Q Consensus 150 ~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (389)
....+. .....|..+...++ .+.+++.++.+|.++...+..-.. ...+. ....+.+..+.... ...
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~----l~e~d~lv~~~~~~-~~~ 156 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN----LKNDDQVVDVHLTD-GMN 156 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC----CCTTCCEEEEEEEC-SCS
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE----eCCCCEEEEEEEeC-CCC
Confidence 111111 12234555443332 235788999999999988742211 11111 12235565555554 445
Q ss_pred EEEEeeCCCceEEEeCCCCC---c---ceeEEee-eccceEEEEEecCCC-EEEEEecCCeEEEEECCCC-------cee
Q 016458 221 MFVSGSCDSTARLWDTRVAS---R---AVRTFHG-HEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTG-------HQL 285 (389)
Q Consensus 221 ~l~~~~~dg~i~i~d~~~~~---~---~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------~~~ 285 (389)
.++..+.+|.+..+....-. . -+..+.- ....|.++...+++. .+++.+..|..+..++..- +-.
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 67777888988888764321 1 1111111 223466665444444 7888888998888776541 111
Q ss_pred eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
..+... ......+..+....++..++..+.+|.+.-+++..
T Consensus 237 ~~~~~~--~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 237 VILREL--KANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp ECSCCC--SSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ECeeec--CCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 111110 01111244333223344555666777776666543
No 387
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.73 E-value=22 Score=29.08 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=106.3
Q ss_pred cEEEEeeCCCeEEEEeCCCCeeEEEec-C--cccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc------
Q 016458 172 THLITSSGDQTCVLWDITTGLRTSVFG-G--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------ 242 (389)
Q Consensus 172 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------ 242 (389)
.++++.+.+|.|+-..+..-.....-. . .......+.+..+.... ....++..+..|.++-+....-...
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 578889999999988765432111000 0 00012334455554444 4455666778888777655322110
Q ss_pred -----eeEEeeeccceEEEEEec---CCCEEEEEecCCeEEEEECCCCcee-----eEeeccCCCCCCCCeeEEEeCCCC
Q 016458 243 -----VRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQL-----QVYYQQHGENEIPHVTSIAFSISG 309 (389)
Q Consensus 243 -----~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~ 309 (389)
...+. ....|.++...+ +..+|+..+..|.++...+...... ..+.. .....+..+......
T Consensus 88 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L----~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 88 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL----NDKDFVTSAEIVFKD 162 (312)
T ss_dssp CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC----CTTCCEEEEEEECTT
T ss_pred cChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec----CCCCEEEEEEEeCCC
Confidence 11112 123344443332 4677888999999998887543211 11111 112235555555555
Q ss_pred CEEEEEecCCcEEEEEcccce-------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEEeecceeccc
Q 016458 310 RLLFAGYSNGDCYVWDTLLAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKVNLGFWRVQE 378 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~~~~W~~~~ 378 (389)
..++..+.+|.+..+....-. -...+. -.....|.++....++..+++.+..|..+. .++.+
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~---L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr----~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK---LKEGDLFVKVLSVKENPYLLIVSENGYGKR----LNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC---CCTTCCEEEEEECTTCSEEEEEETTSEEEE----EEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE---eCCCCEEEEEEEECCCCeEEEEECCCceEE----EEHHH
Confidence 678888899999888875311 111111 122455666666555667888888888877 55543
No 388
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.06 E-value=1.8 Score=27.42 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLD 35 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (389)
.++++|+++...++.++++|+.++..++..+..
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877766543
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.64 E-value=11 Score=33.73 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCeeEEEeCCCCCEEEEEec------------CCcEEEEEcccceEEEeecCcCCCCCCCeeEEEECCCCCeEEeee
Q 016458 298 PHVTSIAFSISGRLLFAGYS------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (389)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 362 (389)
.....|+|+++|.+.++... .+.+..++..+++....+. ......++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~---~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV---GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE---CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe---CCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987774432 1257777776777655552 22345789999999999887754
No 390
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=78.51 E-value=41 Score=30.95 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=71.2
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCee--E--EEeeCCCcEEEEEECCCCcEEEEecCCCcEEEEe---CCCCCCCCCCCc
Q 016458 77 SERNRIVSASQDGRLIVWNALTSQKT--H--AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNLP 149 (389)
Q Consensus 77 ~~~~~l~~~~~dg~v~iw~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~~ 149 (389)
++.+..++-+.+|.|+-- .+.-. . .++.. ..+..+.-......++.-+..|.++-.. +...........
T Consensus 470 ~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~~-D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~ 545 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 545 (716)
T ss_dssp CCCCCCEEEETTTEEEEC---CC----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBST
T ss_pred CCceEEEEEecCCeEecc---CCCCcCccccccCCC-CeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHH
Confidence 556667777777877642 11111 1 11111 2233333333444455555667644433 322211111111
Q ss_pred ceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE-----EEecCcccCCCCCCeeEEEeeCCCCcEEEE
Q 016458 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-----SVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (389)
Q Consensus 150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (389)
....+. ....|..+....+ +.+++.++..|.++...+...... ..+. ....+.+..+.........++.
T Consensus 546 ~ll~l~-~~e~i~~~~~~~~-~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~----L~~~d~lv~~~~~~~~~~~v~l 619 (716)
T 1zvu_A 546 GKLTLP-PGATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARNRAGKALIT----LPENAHVMPPVVIEDASDMLLA 619 (716)
T ss_dssp TTSCCC-TTCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBC----CCTTCCBCCCEECCCTTCEEEE
T ss_pred hccCCC-CCCeEEEEEEecC-CceEEEEeCCceEEEecHHHhcccCccceEEEe----eCCCCEEEEEEEecCCCCEEEE
Confidence 111111 2334555544444 367888899999998876542211 1110 1223444444444224456777
Q ss_pred eeCCCceEEEeCCC
Q 016458 225 GSCDSTARLWDTRV 238 (389)
Q Consensus 225 ~~~dg~i~i~d~~~ 238 (389)
.+.+|.+..|+...
T Consensus 620 ~t~~g~~lrf~~~~ 633 (716)
T 1zvu_A 620 ITQAGRMLMFPVSD 633 (716)
T ss_dssp EETTSEEEEEESTT
T ss_pred EeCCCeEEEEEHHH
Confidence 88889988888764
No 391
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.85 E-value=2.6 Score=20.93 Aligned_cols=26 Identities=4% Similarity=0.012 Sum_probs=14.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLK 27 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (389)
|-+..+.++.+++++.+...|++++.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665554
No 392
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.27 E-value=47 Score=30.94 Aligned_cols=241 Identities=11% Similarity=0.082 Sum_probs=115.4
Q ss_pred ECCCCcEEEEe-----cCCCcEEEEeCCCCCCCCCCCcceeeecc---cccceEEEEEeeCCCcEEEEe----------e
Q 016458 117 FSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQYVPDEDTHLITS----------S 178 (389)
Q Consensus 117 ~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~----------~ 178 (389)
++|++++++.+ +.-..++++|+.+++.....+. . ..+. .......++|..+ +..+++. +
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~-~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-P-ITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-C-BCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-c-ccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCC
Confidence 78898887764 2234699999998653221111 0 0000 0001233477744 3445432 1
Q ss_pred CCCeEEEEeCCCCe--eEEEecCcccCCCCCCeeEEEeeCCCCc----EEEEee---CCCceEEEeCCCCCcceeEEeee
Q 016458 179 GDQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSR----MFVSGS---CDSTARLWDTRVASRAVRTFHGH 249 (389)
Q Consensus 179 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~ 249 (389)
....|+.|.+-+.. -...+.. .....-.+...+++... .+++.+ ....+.+.|.......+..+...
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEV----PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEEC----CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CCCEEEEEECCCChHHCeEEecc----CCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 23568888877653 2233321 11222233444443332 344433 22456666665432222233221
Q ss_pred ccceEEEEEecCCCEEEEE----------ecCCeEEEEECCCCc-------eeeEeeccCCCCCCCCeeEEEeCCCCCEE
Q 016458 250 EGDVNTVKFFPDGNRFGTG----------SDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (389)
Q Consensus 250 ~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (389)
.. ..+..+.++.+++.. ...+.|...|+.++. ....+..+. ....+..+.+..+ .++
T Consensus 290 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 290 SD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT---ANEVFNFISTTKD-RVF 363 (711)
T ss_dssp TT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC---TTEEEEEEEECSS-CEE
T ss_pred Cc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC---CCCeEEEEEEECC-EEE
Confidence 11 112334455555532 146778888887642 122222211 1224778888865 566
Q ss_pred EEEecCC--cEEEEEcccce-EEEe-ecCcCCCCCCCeeEEEECCCCCe-EEeeeC---CCeeEEeecceecc
Q 016458 313 FAGYSNG--DCYVWDTLLAK-VVLN-LGSLQNSHEGRITCLGLSADGSA-LCTGSW---DTNLKVNLGFWRVQ 377 (389)
Q Consensus 313 ~~~~~dg--~i~i~d~~~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~i~~~~W~~~ 377 (389)
++...++ .+.++|+.++. .... +. ....+.+..+..++++.. +++.+. -+.+.. +++.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~---lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~----~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLK---LPYQNAIFGMSSYEEEEEALITIENSIVPPTIYL----WVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEEC---CCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEE----ECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccC---CCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEE----EeCC
Confidence 6666776 46777776664 1222 21 111345666677676544 343332 244555 5554
No 393
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.78 E-value=48 Score=30.85 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=119.6
Q ss_pred cEEEEE-EcCCCCeEEEEe-----cCCcEEEEeCCCCCeeEE-Ee-eCCC------cEEEEEECCCCcEEEEe-------
Q 016458 69 KVYSLD-WTSERNRIVSAS-----QDGRLIVWNALTSQKTHA-IK-LPCA------WVMTCAFSPTGQSVACG------- 127 (389)
Q Consensus 69 ~v~~~~-~~~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~-~~-~~~~------~v~~~~~~~~~~~l~~~------- 127 (389)
....+. ++|++++++.+- .-..++++|+.+++.+.. +. .... ....++|..+...+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 345555 889998776532 224799999999877631 11 0000 11334676344444432
Q ss_pred ---cCCCcEEEEeCCCCCCCCCCCcceeeecccccce-EEEEEeeCCCc----EEEEeeC---CCeEEEEeCCC--CeeE
Q 016458 128 ---GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-SCCQYVPDEDT----HLITSSG---DQTCVLWDITT--GLRT 194 (389)
Q Consensus 128 ---~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~~~~~---dg~i~iwd~~~--~~~~ 194 (389)
+....|+.|.+.++... -...+.+....+ .....++++.. .+++.+. ...+.+.+... +...
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 284 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEK-----AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ 284 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGG-----CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE
T ss_pred CcCCCCCEEEEEECCCChHH-----CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce
Confidence 12346888888764321 122232222222 22334455432 3444332 24566666553 3322
Q ss_pred EEecCcccCCCCCCeeEEEeeCCCCcEEEEe----------eCCCceEEEeCCCCC------cceeE-Eee-eccceEEE
Q 016458 195 SVFGGEFQSGHTADVLSVSISGSNSRMFVSG----------SCDSTARLWDTRVAS------RAVRT-FHG-HEGDVNTV 256 (389)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~------~~~~~-~~~-~~~~i~~~ 256 (389)
... ..... .+..+. ++.+++.. ...+.|...|+.... ..... +.. ....+..+
T Consensus 285 ~l~-----~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (711)
T 4hvt_A 285 KIN-----MPSDA---TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFI 355 (711)
T ss_dssp ECC-----SCTTC---EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEE
T ss_pred Eee-----cCCcc---eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEE
Confidence 221 11111 122333 45555532 246779999987641 22333 322 23357788
Q ss_pred EEecCCCEEEEEecCCe--EEEEECCCCc-eeeE-eeccCCCCCCCCeeEEEeCCCCCE-EEEEec---CCcEEEEEcc
Q 016458 257 KFFPDGNRFGTGSDDGT--CRLFDIRTGH-QLQV-YYQQHGENEIPHVTSIAFSISGRL-LFAGYS---NGDCYVWDTL 327 (389)
Q Consensus 257 ~~~~~~~~l~~~~~dg~--i~i~d~~~~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~---dg~i~i~d~~ 327 (389)
.+..+ .++++...++. +.++|+.++. .... +.... ...+.....++++.. +++.+. -+.+..+|+.
T Consensus 356 ~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~----~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 356 STTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY----QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCS----TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCC----CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 88765 56677777764 6777766553 1222 21111 113666666777654 443332 3568888876
No 394
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=76.75 E-value=3.8 Score=18.05 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 016458 17 ETVNSLRERLKQKRQ 31 (389)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (389)
.|++.+++++...+.
T Consensus 8 keledlqerlrklrk 22 (27)
T 3twe_A 8 KELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 395
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=76.54 E-value=13 Score=33.68 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=40.1
Q ss_pred eEEEEEecCCCEEEEEecC------------CeEEEEECCCCceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 253 VNTVKFFPDGNRFGTGSDD------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 253 i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++....+..+. ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~----gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT----TCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC----CccCcCeeECCCCCEEEEE
Confidence 4679999999866654322 246666666666555444332 2359999999999988775
No 396
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.52 E-value=2.9 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
+++.+..+...+..++..|++++..+++
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 397
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.50 E-value=2.5 Score=26.06 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.++++|+++...++.+++.|..++..++..+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666543
No 398
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=75.80 E-value=5.5 Score=19.51 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
+|.+|+.+.+++-.+-..|+.+...++..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46677777777777777777666666554
No 399
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.70 E-value=2.6 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
.+++|+.+...++.++..|+.++..+++.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 400
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.77 E-value=4.5 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=19.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 2 SSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+.++.++.+..-++++.-+.++.-+..++.++
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdei 40 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEI 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHH
Confidence 44566777666666666666666665555543
No 401
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.48 E-value=4.1 Score=26.90 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
.+++|+.++..+.++++....+++.+|.+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4677777777777777777777777765543
No 402
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.19 E-value=6.7 Score=19.27 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++.|++.+.+++-.+...++.+....+.-+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567788888888888888887777776544
No 403
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.55 E-value=35 Score=27.25 Aligned_cols=198 Identities=7% Similarity=-0.024 Sum_probs=106.3
Q ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEe---CCCCCCCCCCCcceeeecccccceEEEEEeeC-CCcEEEEeeCCCeEEE
Q 016458 110 AWVMTCAFSPTGQSVACGGLDSVCSIFN---LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVL 185 (389)
Q Consensus 110 ~~v~~~~~~~~~~~l~~~~~dg~i~vw~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i 185 (389)
+.+..+........|+.-+.+|.++--. +...... . . +. ....|..+.. ++ .+..++..+.+|.++.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-~----l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKV-S----L--KS-REEKIVGAFI-REKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEEC-C----C--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccc-c----c--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEE
Confidence 3344444444444555566677655433 2211100 0 1 22 2345555543 32 3468999999999999
Q ss_pred EeCCCCe----eEEEecCcccCCCCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCc--------ceeEEeeeccce
Q 016458 186 WDITTGL----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--------AVRTFHGHEGDV 253 (389)
Q Consensus 186 wd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~i 253 (389)
..+..-. -...+ .....+.+..+.... ....++..+..|.+..+....-.. ....+. ....|
T Consensus 95 ~~l~~~~~~~~G~~~i----~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~v 168 (276)
T 3no0_A 95 IPLAEFEYKAQGMPII----KLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDET 168 (276)
T ss_dssp EEGGGTTTCSTTEECS----CCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred EEHHHhhhhcCCeEEE----ecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEE
Confidence 9875532 01111 012345566665554 455677778889888876543211 111122 23456
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCc-------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEE--E
Q 016458 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV--W 324 (389)
Q Consensus 254 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~ 324 (389)
..+...+++..++..+..|.++...+.... -...+ . ....+..+....+...++..+.+|.+.. +
T Consensus 169 v~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~-----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~ 242 (276)
T 3no0_A 169 SGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-G-----TKDTLVDLIPIKEEVELLITTKNGKAFYDKI 242 (276)
T ss_dssp EEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-C-----SSSCEEEEEEESSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-c-----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeee
Confidence 666555667789999999999988864322 12222 1 1122444433334446666778888777 7
Q ss_pred Eccc
Q 016458 325 DTLL 328 (389)
Q Consensus 325 d~~~ 328 (389)
+...
T Consensus 243 ~~~~ 246 (276)
T 3no0_A 243 NQKD 246 (276)
T ss_dssp EGGG
T ss_pred CHHH
Confidence 7643
No 404
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=72.19 E-value=4.7 Score=26.91 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
++.+|+.+...++++++.++++++..++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999988865
No 405
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.15 E-value=31 Score=30.94 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCCeEEEEec------------CCcEEEEeCCCCCeeEEEeeC-CCcEEEEEECCCCcEEEEe
Q 016458 68 GKVYSLDWTSERNRIVSASQ------------DGRLIVWNALTSQKTHAIKLP-CAWVMTCAFSPTGQSVACG 127 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~------------dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 127 (389)
+....|.|+++|.+.++... .+.|..++..+++....+..+ ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45778999999987763221 125666777777776666544 3568999999999988875
No 406
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.69 E-value=15 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=31.4
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeec
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (389)
+.+++..++..++++-+.|+.++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 5556667788999999999999999999999887754
No 407
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.30 E-value=4.4 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
++.|+.+...+..++..|.+++..++
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 408
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=70.82 E-value=11 Score=21.38 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+++|+.+...++.+...|..++..+++..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777777776553
No 409
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=70.73 E-value=47 Score=28.02 Aligned_cols=249 Identities=11% Similarity=0.056 Sum_probs=121.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCC--------CeeEE---Ee-eCCCcEEEEEECCCCcEEEEecCCCcEEEE
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTS--------QKTHA---IK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--------~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 136 (389)
.|..++.. ....+.-..||.|..|-.... ..... +. .....+..++.+......+.-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 35555543 235555667889999853221 11111 11 122345556777666777777789999999
Q ss_pred eCCCCCC----CCCCCcceeeeccc-ccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCe------e-EEEecCcccCC
Q 016458 137 NLNSPTD----KDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL------R-TSVFGGEFQSG 204 (389)
Q Consensus 137 ~~~~~~~----~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~-~~~~~~~~~~~ 204 (389)
-...... ..........+... ...|..++.. ....++-..+|.|..|-....- . ....+......
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 6543110 00000111111111 1245555443 2456666789999999653210 0 00000011112
Q ss_pred CCCCeeEEEeeCCCCcEEEEeeCCCceEEEeCCCCCcc---------e-eEEee-eccceEEEEEecCCCEEEEEecCCe
Q 016458 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---------V-RTFHG-HEGDVNTVKFFPDGNRFGTGSDDGT 273 (389)
Q Consensus 205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 273 (389)
....|..++... .....++-..+|.|+.|-.....+. . ..+.. ....|..++.. ....++-..||.
T Consensus 209 ~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~ 285 (389)
T 3kci_A 209 QGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGA 285 (389)
T ss_dssp TTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSC
T ss_pred CCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCe
Confidence 234566666543 2345556678999999965432111 0 01111 11235555553 345555678999
Q ss_pred EEEEECCCCcee-------eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcc
Q 016458 274 CRLFDIRTGHQL-------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (389)
Q Consensus 274 i~i~d~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (389)
|+.|-......+ ...+..-.......|..++. ...+.++-..||.|+.|-..
T Consensus 286 v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence 999975431110 00000000001113555554 33455556789999999754
No 410
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=70.37 E-value=9.9 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERL 26 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (389)
++.+|++...+.++|+++|..-+
T Consensus 19 kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHH
Confidence 34555555555555555554443
No 411
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=69.79 E-value=9.1 Score=19.38 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 10 ERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
++...++.|++.++.++.+.+..+
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776665443
No 412
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.43 E-value=9.4 Score=35.23 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee
Q 016458 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL 107 (389)
Q Consensus 68 ~~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 107 (389)
..|.++.+. ..++++-+.|+++|+||+.+++.+.....
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 357766664 56999999999999999999998877665
No 413
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.87 E-value=50 Score=27.17 Aligned_cols=239 Identities=10% Similarity=-0.002 Sum_probs=121.8
Q ss_pred cEEEEecCCCcEEEEeCCCCCCC--CCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEe---CCCC-----
Q 016458 122 QSVACGGLDSVCSIFNLNSPTDK--DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD---ITTG----- 191 (389)
Q Consensus 122 ~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd---~~~~----- 191 (389)
..+++.+.+|.|+--.+..-... .+.-.....+ .....+..+...... ..++.-+..|.++... +...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-ke~D~~~~~~~~~t~-d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVAHFFVCSTH-DLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC-CGGGCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-CCCCEEEEEEEeCCC-CEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 45667777888776553320000 0000000111 123445555444544 4566666777766544 3322
Q ss_pred -eeEEEecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCCc------ceeEEeeeccceEEEEEecCC
Q 016458 192 -LRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 192 -~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~ 262 (389)
..+..+ ........|.++...+. +...++..+.+|.++-..+..... ....+.. ...+..+......
T Consensus 82 G~~i~~~---l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 82 GQHVANL---LAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG 157 (327)
T ss_dssp CEEHHHH---TTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT
T ss_pred CEEHHHc---cCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC
Confidence 211111 11223455666655432 467899999999999887654311 1112222 3345555555556
Q ss_pred CEEEEEecCCeEEEEECC--CCceeeE----eeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce------
Q 016458 263 NRFGTGSDDGTCRLFDIR--TGHQLQV----YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK------ 330 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~--~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------ 330 (389)
..|+..+..|.+..+... .-..... ... -.......|.++...+++.+++..+..|.++.-.+..-.
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~-i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRPMGRATSGVQG-MRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES-SCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CEEEEEECCCeEEEEECcccccCcCCcCCCCeee-ecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC
Confidence 678888899998888776 2111000 000 001112247777666666788899999998887764322
Q ss_pred -EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 331 -VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 331 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
-+..+.. ..-.+.+..+....+...++..+.+|.+.-
T Consensus 237 ~G~~~~~l--~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 237 KGVLTVMY--DRRRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp CCEESSCC--CTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred CcEEEEEe--cCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 2222211 111234544444334445666666776554
No 414
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.85 E-value=7.3 Score=22.84 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.+++|+.+...++.+...|..++..+++++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777776654
No 415
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.67 E-value=7 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQLLDV 36 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (389)
+.+..+.++++.++.|..+|+++++.+..++...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888877666543
No 416
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.45 E-value=4.7 Score=40.00 Aligned_cols=39 Identities=31% Similarity=0.281 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCCeEEEEecCCcEEEEeCCCCCeeEEEee
Q 016458 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL 107 (389)
Q Consensus 69 ~v~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 107 (389)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667777888999999999999999999998887654
No 417
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.17 E-value=10 Score=19.05 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
++++..+++..++.++++|+++.-+
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655433
No 418
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.07 E-value=11 Score=22.72 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016458 11 RHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+++.++.++.+.++.++.++.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 419
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.67 E-value=2.8 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
+++|+.+...+..+...|..++..++.+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 420
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=65.56 E-value=89 Score=29.22 Aligned_cols=112 Identities=11% Similarity=-0.003 Sum_probs=55.8
Q ss_pred cEEEEEECCCC-cEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecc----cccceEEEEEeeCCCcEEEEeeCC-----
Q 016458 111 WVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG----HKGYVSCCQYVPDEDTHLITSSGD----- 180 (389)
Q Consensus 111 ~v~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d----- 180 (389)
.|..++++|.. ..++++...+.|...+-... .+..+..... ....|.+|++.|..+..++++...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~-----tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~ 98 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTE-----TWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDW 98 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTT-----EEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCC-----CEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccc
Confidence 78999999863 55666665665544432221 1111100001 124589999998655555554421
Q ss_pred --CeEEEEeCC-CCeeEEEecCcccCC----CCCCeeEEEeeCCCCcEEEEeeC
Q 016458 181 --QTCVLWDIT-TGLRTSVFGGEFQSG----HTADVLSVSISGSNSRMFVSGSC 227 (389)
Q Consensus 181 --g~i~iwd~~-~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~ 227 (389)
+...+|.-. .++.-.......... ....+..++++|.+.+.++++..
T Consensus 99 ~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 99 LPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp SCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 123344433 333222221111000 01134678999877777777764
No 421
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.41 E-value=62 Score=27.33 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=82.2
Q ss_pred ccceEEEEEe---eC---CCcEEEEe-eCCCeEEEEeCCCCeeEEEecCcccCCC-------------CCCeeEEEeeCC
Q 016458 158 KGYVSCCQYV---PD---EDTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGH-------------TADVLSVSISGS 217 (389)
Q Consensus 158 ~~~v~~~~~~---~~---~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~ 217 (389)
...+..+.+. +. ++.+++.+ ...+-|.++|+.+++..+.....+.... ...+..++.+|.
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3567788887 21 12344443 3578899999999987766632221110 246778888884
Q ss_pred C---CcEEEEeeCCCceEEEeCC-----CC--CcceeEEeeecc---ceEEEEEe-cCCCEEEEEecCCeEEEEECCC-C
Q 016458 218 N---SRMFVSGSCDSTARLWDTR-----VA--SRAVRTFHGHEG---DVNTVKFF-PDGNRFGTGSDDGTCRLFDIRT-G 282 (389)
Q Consensus 218 ~---~~~l~~~~~dg~i~i~d~~-----~~--~~~~~~~~~~~~---~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~ 282 (389)
. ++.|.-....+ -++|.+. .. ...++. .+..+ .-..+++. .+|.++++--..+.|..|+..+ .
T Consensus 231 ~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~ 308 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMP 308 (381)
T ss_dssp CTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCS
T ss_pred cCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCc
Confidence 1 34444443332 2333322 11 122222 22332 23356675 5777777777889999999875 1
Q ss_pred ---ceeeEeeccCCCCCCCCeeEEEeCCCCCEEEEE
Q 016458 283 ---HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (389)
Q Consensus 283 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (389)
.....+... . .......+.+.++|.+.+..
T Consensus 309 ~~~~n~~~l~~d--~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 309 LRMKNTDVVYTS--S-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp BCGGGEEEEEEC--T-TCCSEEEEEECTTSCEEEEE
T ss_pred cccCceEEEEEC--C-CccccCeEEECCCCeEEEEE
Confidence 122222221 1 23356777776666544443
No 422
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=64.65 E-value=16 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
.+.++.++..++++..+++.++...+.++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777777777766554
No 423
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=64.08 E-value=3.4 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
+|.+||+++.+++.++.++++++..
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999988888887777654
No 424
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.40 E-value=4.5 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRER 25 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (389)
.++|+.+...+.++.+.+..+
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 425
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=63.28 E-value=11 Score=22.37 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 11 RHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
++.+++.++....+++.+++.++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 426
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.47 E-value=1e+02 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.1
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEEcccceEEEeecC
Q 016458 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (389)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (389)
|.++.+ +..++++-+.|..+++|++.+++.+.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 454444 467999999999999999999998877653
No 427
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=61.80 E-value=8.6 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016458 7 ELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
+++.+...+....+.|.+.+++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333333
No 428
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.35 E-value=13 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
++.+||.-+....+|+.+..+.++....
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk 47 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELEL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444444433
No 429
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=61.24 E-value=12 Score=17.55 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 7 ELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
+|+++...++.-.+.|.+++..+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 430
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.72 E-value=17 Score=22.68 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
|..|+++...++.++++|+++...++.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777665543
No 431
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=59.91 E-value=1.1e+02 Score=28.31 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=48.9
Q ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeCCCCCCCCCCCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC
Q 016458 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (389)
Q Consensus 109 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 188 (389)
...|..+....+..+++.++.+|.++.-.+..-............+.. ...+..+....+++..++..+.+|.+..|+.
T Consensus 553 ~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 553 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred CCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence 345666655556778888999999998887653221111111222222 2344444444333457888899999999987
Q ss_pred CC
Q 016458 189 TT 190 (389)
Q Consensus 189 ~~ 190 (389)
..
T Consensus 632 ~~ 633 (716)
T 1zvu_A 632 SD 633 (716)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 432
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.70 E-value=9.5 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
.|..|++++.++..++++|+.+.+....+
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 45555555555555555555555544443
No 433
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.05 E-value=12 Score=21.36 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 7 ELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
|..+-+++..++++.+.++..+++++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~ 49 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAK 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455554444444443
No 434
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=58.76 E-value=6.6 Score=18.05 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
+..|++++..+++.-...++++.++.
T Consensus 2 iaaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555555555543
No 435
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=58.53 E-value=6.1 Score=23.54 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=15.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Q 016458 2 SSSVSELKERHAAAIETVNSLRER 25 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (389)
+++|.+|+++..+++.|-.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666665543
No 436
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.41 E-value=20 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
|..|+++...+..+.++|+.+...++.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777776666666554
No 437
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=57.98 E-value=17 Score=23.51 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
+.+++||+++...+.++...+++++...++
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888777777777665544
No 438
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=57.73 E-value=10 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
.+.+|+.++.....++.+|+.++...+.-
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666666666666655543
No 439
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=57.09 E-value=23 Score=19.67 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016458 8 LKERHAAAIETVNSL 22 (389)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (389)
|+.+..+.++|+++|
T Consensus 30 Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 30 LEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 440
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.08 E-value=19 Score=18.79 Aligned_cols=28 Identities=7% Similarity=0.247 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
+|+++..+++..++++..++.++.++.+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666555543
No 441
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=56.66 E-value=17 Score=18.06 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016458 7 ELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
+|.+.+++-.+|+.+|+++-.++
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455555555555555554444
No 442
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.15 E-value=24 Score=21.71 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
.++.+++.+...++..++.++++++..+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655544
No 443
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=55.62 E-value=25 Score=19.62 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
++..|++.++.++.++...+++....++.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555566666655555555554444443
No 444
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.52 E-value=15 Score=20.49 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
++++|..+...+..++.+|..++...+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 445
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.06 E-value=7.9 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRE 24 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (389)
+++|++++..+++++.+|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444
No 446
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=54.82 E-value=29 Score=20.16 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.++..++.+++..+..+..|++++...|.++
T Consensus 26 ~~vgdiEqeLe~Ck~sIrrLE~evn~ErFrm 56 (72)
T 1k1f_A 26 RSVGDIEQELERAKASIRRLEQEVNQERFRM 56 (72)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3577888889999999999998888776543
No 447
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.30 E-value=22 Score=18.54 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
+.+|+.+..+++....+|++++.-..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 448
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=53.70 E-value=30 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
+.+++|++++...+.++...+++++.....
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888877777777665543
No 449
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.47 E-value=24 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
+.+.+.+...+..+++.+++++++.
T Consensus 47 L~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 47 LREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555543
No 450
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.20 E-value=26 Score=19.04 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.++++|-++.+.++.|...|+++++....++
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 4677888888888888877777777655444
No 451
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=52.89 E-value=41 Score=30.05 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=44.1
Q ss_pred eeEEEeCCCC--CEEEEEecCCcEEEEEcccc----eEEEeecCcCCCCCCCee-EEEECCCCCeEEeeeCCCeeEE
Q 016458 300 VTSIAFSISG--RLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 300 i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 369 (389)
+++++....+ ..++.|+.+|.|.-..+... ..+..+.. .....+|. .|.++++..+|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v--~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV--FKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC--CTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe--ecCCCccccceEEccCCCeEEEEecccccee
Confidence 4555544333 36778999998765544322 22333321 22346785 8999999999999999888877
No 452
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=52.51 E-value=93 Score=25.30 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=110.5
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCC--CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeE--
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-- 194 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-- 194 (389)
++..++++.+.+|.|+--.+..-..... .-.....+.. ...+..+...... ..++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4667788889999999887654221100 0000111222 2344455455544 46777888898877765321111
Q ss_pred -E---EecCcccCCCCCCeeEEEeeCC--CCcEEEEeeCCCceEEEeCCCCC------cceeEEeeeccceEEEEEecCC
Q 016458 195 -S---VFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 195 -~---~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~ 262 (389)
. .+...........|.++...+. ....++..+..|.++...+.... .....+.. ...+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 0 0000011223345655544431 35567788999999988775331 11112222 3455555555556
Q ss_pred CEEEEEecCCeEEEEECCCCce-------eeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEccc
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQ-------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (389)
..++..+.+|.+..+....-.. ...+... ....+..+..-.++..+++.+..|.....++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~----~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK----EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC----TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC----CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6788899999999988754111 1111111 122366665555666788888999988888753
No 453
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.25 E-value=22 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
..++++.+...++.+...|+.++..++.+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888887776653
No 454
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.14 E-value=17 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
++.+++.+...++..+..++++++..+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455555566666666666665555543
No 455
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=49.90 E-value=31 Score=19.06 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
++++|+++...+..++++..+++..
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~ 35 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQ 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5788998888776666554444433
No 456
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.60 E-value=32 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016458 7 ELKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (389)
.++++++.+..++..|+.++.....++.+.+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4577788888888888888888887776654
No 457
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=49.32 E-value=6 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Q 016458 2 SSSVSELKERHAAAIETVNSLRER 25 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (389)
++++++|+++..+++.++.+++.+
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877643
No 458
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=49.07 E-value=34 Score=21.24 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
|.+|+++...++++.++|+..+++.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666665554
No 459
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.89 E-value=37 Score=19.59 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.+++|+.+...+..+...|..++..++.++
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888888777654
No 460
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=48.83 E-value=42 Score=21.44 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
+.+++|++++...+.++...+++++....
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAER 33 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778887777777777766666655443
No 461
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=48.07 E-value=64 Score=28.44 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=43.6
Q ss_pred eeEEEeCC----CCC--EEEEEecCCcEEEEEcc-cce-------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCC
Q 016458 300 VTSIAFSI----SGR--LLFAGYSNGDCYVWDTL-LAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (389)
Q Consensus 300 i~~~~~~~----~~~--~l~~~~~dg~i~i~d~~-~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 365 (389)
.++++... +++ .++.|+.+|.|.=.-+. .+. .+.++.. .....+|..|.++++..+|.+++.++
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v--~~~~~pI~~m~l~~~~~~Lyv~s~~~ 483 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV--FREPTTISAMELSTKQQQLYIGSTAG 483 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECC--SSSCCCCCEEEEETTTTEEEEEBSSC
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee--cCCCCccceEEEcCCCCEEEEEECCe
Confidence 46665542 233 57789999987544332 211 1222221 12357899999999999999999999
Q ss_pred eeEE
Q 016458 366 NLKV 369 (389)
Q Consensus 366 ~i~i 369 (389)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 462
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=47.06 E-value=61 Score=28.96 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=41.7
Q ss_pred ceEEEEEecC--CCEEEEEecCCeEEEEECCCCc----eeeEeeccCCCCCCCCee-EEEeCCCCCEEEEEecCCcEEE
Q 016458 252 DVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 252 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 323 (389)
.+++|+.... ...++.|+.+|.|.-..+.... ....+... ....+|. .|.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~---~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVF---KDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECC---TTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEee---cCCCccccceEEccCCCeEEEEecccccee
Confidence 3566666553 3457788899987666554321 12222221 1123574 8999999999999987754443
No 463
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.87 E-value=1.1e+02 Score=24.70 Aligned_cols=242 Identities=8% Similarity=-0.002 Sum_probs=119.9
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCCCCCC--CCcceeeecccccceEEEEEeeCCCcEEEEeeCCCeEEEEeC---CCCee
Q 016458 119 PTGQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI---TTGLR 193 (389)
Q Consensus 119 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~~ 193 (389)
|+...+++.+.+|.|+--.+..-..... .-.....++. .+.+..+...... ..++..+..|.++-+.. .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCC
Confidence 3556788888999998777654211000 0000111222 2344444444443 46777778888666554 22211
Q ss_pred --EEE-ecCcccCCCCCCeeEEEeeC--CCCcEEEEeeCCCceEEEeCCCCCc------ceeEEeeeccceEEEEEecCC
Q 016458 194 --TSV-FGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKFFPDG 262 (389)
Q Consensus 194 --~~~-~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~ 262 (389)
... +...........|.++...+ .+..+++..+..|.++-..+..... ....+..+ ..+..+....+.
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 000 00001112344566665432 2455788889999999887643211 11122222 445555555555
Q ss_pred CEEEEEecCCeEEEEECCCCcee-------eEeeccCCCCCCCCeeEEEeCCCCCEEEEEecCCcEEEEEcccce-----
Q 016458 263 NRFGTGSDDGTCRLFDIRTGHQL-------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK----- 330 (389)
Q Consensus 263 ~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 330 (389)
..++..+.+|.+..+....-... ..+.. .....|.++...+++..+++.+..|.+.-.++..-.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L----~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL----GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC----CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe----CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 67888888999888876432111 11111 112246666655556678888899988887764211
Q ss_pred --EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 331 --VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 331 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
-...+.. ....+.+..+....+...++..+.+|.+.-
T Consensus 234 ~kG~~~~~~--~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir 272 (307)
T 1zi0_A 234 TKGVISIKV--TERNGLVVGAVQVDDCDQIMMITDAGTLVR 272 (307)
T ss_dssp SCCEESSCC--CTTTCSEEEEEEECTTCEEEEEESSCCEEE
T ss_pred CCCEEeeEe--cCCCCeEEEEEEeCCCceEEEEcCCCcEEE
Confidence 1112211 122244544444333344555666666544
No 464
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.33 E-value=21 Score=22.30 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
+++++.++..++-+++.+..+++..
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 465
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.75 E-value=23 Score=21.92 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016458 6 SELKERHAA 14 (389)
Q Consensus 6 ~~~~~~~~~ 14 (389)
++|+++...
T Consensus 30 eELKekN~~ 38 (81)
T 2jee_A 30 EELKEKNNS 38 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 466
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=45.65 E-value=75 Score=29.27 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=38.6
Q ss_pred EEEEEecCCcEE-EEEcccce-------EEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 311 LLFAGYSNGDCY-VWDTLLAK-------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 311 ~l~~~~~dg~i~-i~d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.++.|+.+|.|. +....... .+..+.. .....+|..|.++++..+|.+++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v--~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV--FREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEEC--SSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEee--cCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 677899999875 33221111 2222221 245668999999999999999999998887
No 467
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=45.55 E-value=1.4e+02 Score=25.15 Aligned_cols=157 Identities=8% Similarity=0.025 Sum_probs=86.3
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCC-------CCeeEEEee-CCCcEEEEEECCCCcEEEEecCCCcEEEEeCCC---CCC
Q 016458 75 WTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS---PTD 143 (389)
Q Consensus 75 ~~~~~~~l~~~~~dg~v~iw~~~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~ 143 (389)
+-|+..++++.+.+|.|+--.+.. ++-...+.. ....+..+........++..+..|.++-+.... ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 447778999999999999764421 111222222 234566665555666677777788776655432 111
Q ss_pred CCCCCccee--eecccccceEEEEEeeC--CCcEEEEeeCCCeEEEEeCCCCee-----EEEecCcccCCCCCCeeEEEe
Q 016458 144 KDGNLPVSR--MLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADVLSVSI 214 (389)
Q Consensus 144 ~~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~ 214 (389)
...-.+... .+. ....|.++....+ .+.+++.++..|.++...+..... ...+ . ....+.+..+..
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai--~--L~~~d~lv~v~~ 157 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI--N--LDEGDALVGVAL 157 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS--C--CCTTCCEEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE--E--eCCCCEEEEEEE
Confidence 111111111 112 2345555544321 235899999999999987643221 1111 1 122445555555
Q ss_pred eCCCCcEEEEeeCCCceEEEeCC
Q 016458 215 SGSNSRMFVSGSCDSTARLWDTR 237 (389)
Q Consensus 215 ~~~~~~~l~~~~~dg~i~i~d~~ 237 (389)
.. ....++..+.+|.+..++..
T Consensus 158 ~~-~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 158 TD-GDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EC-SCCEEEEEETTSEEEEEEGG
T ss_pred eC-CCceEEEEeCCCeEEEEEcc
Confidence 54 44566777788888777654
No 468
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=45.37 E-value=21 Score=19.17 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRER 25 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (389)
.+|+.+|+.+.++.++..|+.+
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k 28 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNK 28 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 469
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.17 E-value=44 Score=19.36 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQ 32 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (389)
..+++|+.+...+..++..|.+++..+++.
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776665543
No 470
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.14 E-value=23 Score=27.48 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016458 16 IETVNSLRERLKQKRQQ 32 (389)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (389)
.++++++++++...+++
T Consensus 74 ~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 74 METLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 471
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=45.14 E-value=16 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
.++|+|..++..++-|.+.|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999988888754
No 472
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.06 E-value=12 Score=23.27 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016458 7 ELKERHAAAIETVNSLRERL 26 (389)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (389)
+++++.+.++.+.+.|.+++
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 473
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.79 E-value=13 Score=23.19 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERLK 27 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (389)
..+++++.+.++.+...|+.++.
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 474
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.29 E-value=32 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
+..+++.+...+++|-..|+.+++.+..++.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888876654
No 475
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=44.23 E-value=66 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.++.+|++++..+.++-..|.+.+...++.+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666666666665554444
No 476
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.11 E-value=15 Score=22.09 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 016458 6 SELKERHAAAI 16 (389)
Q Consensus 6 ~~~~~~~~~~~ 16 (389)
.+|+.+...++
T Consensus 32 ~~LE~~v~~le 42 (70)
T 1gd2_E 32 KALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 477
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.09 E-value=24 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=11.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERL 26 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (389)
+++++|+.+++=.+.-+++|.+.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v 37 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEAL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444433
No 478
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=44.08 E-value=24 Score=16.70 Aligned_cols=22 Identities=36% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLRERL 26 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (389)
+..+.++...++++.--+.-+.
T Consensus 3 vsalkekvsalkeqflmlmfkv 24 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444333333
No 479
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=43.61 E-value=83 Score=29.00 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=38.9
Q ss_pred EEEEEecCCcEEE-EEcccce-EEEeecCcCCCCCCCeeEEEECCCC--CeEEeeeCCCeeEE
Q 016458 311 LLFAGYSNGDCYV-WDTLLAK-VVLNLGSLQNSHEGRITCLGLSADG--SALCTGSWDTNLKV 369 (389)
Q Consensus 311 ~l~~~~~dg~i~i-~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i 369 (389)
.++.|+.+|.|.= ....... .+..+.. .....+|..|.++++. .+|++++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~--~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQL--FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEEC--CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecc--cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 6888999998743 3333322 2222222 2345689999999988 89999999888877
No 480
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=42.97 E-value=19 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=11.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERL 26 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (389)
++++.+++++..++..+.-|+.++
T Consensus 45 ~KLa~ln~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 45 NKLSDLNEKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444
No 481
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.62 E-value=25 Score=25.54 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
++++++++..+++.+++++++++..
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544433
No 482
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.27 E-value=50 Score=19.21 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
.+++|+.+...+..+...|..++..++.+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777766554
No 483
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=41.75 E-value=82 Score=28.44 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.2
Q ss_pred CEEEEEecCCcEEEEEcc-cc-----eEEEeecCcCCCCCCCeeEEEECCCCCeEEeeeCCCeeEE
Q 016458 310 RLLFAGYSNGDCYVWDTL-LA-----KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~-~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
..++.|+.+|.|.-.-.. .+ ..+..+.. .....+|..|.++++...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~--~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQP--FRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECC--CSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeec--cCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 367789999987643322 22 12222321 134568999999999999999999988887
No 484
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.72 E-value=28 Score=15.86 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 6 SELKERHAAAIETVNSLRERLKQK 29 (389)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (389)
++++.-...++.|.++++.+.++.
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666555544
No 485
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.60 E-value=22 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQ 28 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (389)
.+++.|+.+...++++.+.|+-++..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 486
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.44 E-value=41 Score=20.69 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016458 4 SVSELKERHAAAIETVNSLRERLKQKRQQLL 34 (389)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (389)
+..+++++...++.|-..|+.++..++.++.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888876654
No 487
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=40.39 E-value=2.4e+02 Score=26.51 Aligned_cols=160 Identities=14% Similarity=0.015 Sum_probs=76.2
Q ss_pred cccCcEEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCeeEEEee------------CCCcEEEEEECC-CCcEEEEecCC
Q 016458 65 GHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKL------------PCAWVMTCAFSP-TGQSVACGGLD 130 (389)
Q Consensus 65 ~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~------------~~~~v~~~~~~~-~~~~l~~~~~d 130 (389)
+-.+.|.+|+++|.+ +.+.++...|.|...+ ..++.-..+.. ....+.+++++| +...++++..+
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 355689999999966 4666666556554433 22332222221 124589999988 33444443221
Q ss_pred -----CcEEEEeCCCCCCCCCCCcceee-ecc---cccc--eEEEEEeeCCCcEEEEeeCCCeEEEEeCCCCeeEEEecC
Q 016458 131 -----SVCSIFNLNSPTDKDGNLPVSRM-LSG---HKGY--VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 199 (389)
Q Consensus 131 -----g~i~vw~~~~~~~~~~~~~~~~~-~~~---~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 199 (389)
....||.-..+. ..+..... ... ..+. ...+++.|..+..++++...+.|.. ....++.-.....
T Consensus 97 ~~~~~~~~~i~~S~DgG---~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~ 172 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRG---KTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQ 172 (763)
T ss_dssp CTTTCSCCEEEEESSTT---SSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTT
T ss_pred cccCCCCceEEEECCCC---CCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCcccccc
Confidence 123444433321 11211111 000 0111 1357888765556666665543332 2223333222211
Q ss_pred cc-cCCCCCCeeEEEeeCCCCcEEEEeeCCC
Q 016458 200 EF-QSGHTADVLSVSISGSNSRMFVSGSCDS 229 (389)
Q Consensus 200 ~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (389)
.. .......+..+.++|.+...++++..++
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 00 0011234778889886655566665554
No 488
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=39.18 E-value=98 Score=27.28 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=40.4
Q ss_pred eEEEEEecC----C--CEEEEEecCCeEEEEECCCCc--------eeeEeeccCCCCCCCCeeEEEeCCCCCEEEEEecC
Q 016458 253 VNTVKFFPD----G--NRFGTGSDDGTCRLFDIRTGH--------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (389)
Q Consensus 253 i~~~~~~~~----~--~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (389)
.++|+...- + ..+..|+.+|.|.-.-+.... .+..+... ....+|..|.++++..+|++++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~---~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF---REPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCS---SSCCCCCEEEEETTTTEEEEEBSS
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeec---CCCCccceEEEcCCCCEEEEEECC
Confidence 466655431 3 346788889987554432211 11222221 122468999999999999999888
Q ss_pred CcEEE
Q 016458 319 GDCYV 323 (389)
Q Consensus 319 g~i~i 323 (389)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 75554
No 489
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.01 E-value=35 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNS 21 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (389)
+..++.+++..+.+..+
T Consensus 23 v~~le~~Le~s~~~q~~ 39 (72)
T 3cve_A 23 LSEMEQRLEKSQSEQDA 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 490
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.11 E-value=71 Score=19.89 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016458 12 HAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (389)
+...+.+++.+++.+...+.
T Consensus 53 l~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544443
No 491
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.95 E-value=36 Score=20.98 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016458 5 VSELKERHAAAIETVNSLR 23 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (389)
+..++.+++..+.+..+++
T Consensus 29 v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 29 LRAMERSLEEARAERERAR 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333
No 492
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.83 E-value=17 Score=31.04 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLDVD 37 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (389)
+++++++++++..++++++++++.++++..+++....
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=37.41 E-value=64 Score=20.32 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
|.+.++++.++++....++-.|-.+....-
T Consensus 1 m~~~L~~lR~~ID~iD~~l~~Ll~~R~~~~ 30 (90)
T 2d8d_A 1 MDERIQALRKEVDRVNREILRLLSERGRLV 30 (90)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888877665554443
No 494
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.91 E-value=31 Score=23.29 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016458 3 SSVSELKERHAAAIETVNSLRERLKQKR 30 (389)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (389)
.+++++++|....+.|+..|+.++...+
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777766555443
No 495
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=36.89 E-value=68 Score=19.23 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQ 31 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (389)
|.+.+++|++++..++....+..-.+=.+-+
T Consensus 1 Mtedi~eLkkevkKL~~~A~q~kmdLHDLaE 31 (71)
T 2js5_A 1 MSEGAEELKAKLKKLNAQATALKMDLHDLAE 31 (71)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 6788899999998888888777766655543
No 496
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=36.72 E-value=45 Score=29.63 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=42.1
Q ss_pred eeEEEeCC--CCCEEEEEecCCcEEEEEcc-cc--eEEEeecCcCCCCCCCe-eEEEECCCCCeEEeeeCCCeeEE
Q 016458 300 VTSIAFSI--SGRLLFAGYSNGDCYVWDTL-LA--KVVLNLGSLQNSHEGRI-TCLGLSADGSALCTGSWDTNLKV 369 (389)
Q Consensus 300 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~--~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i 369 (389)
.++++... +...++.|+.+|.|.-.-+. .. ..+..+. -....+| ..|.++++..+|..++.++.++|
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~---v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQS---IQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEE---SSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeec---cCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 45555432 22356778899987644432 21 1222222 1234577 48999999999999999998887
No 497
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=36.68 E-value=1.2e+02 Score=26.92 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=41.0
Q ss_pred eEEEEEec-CC-CEEEEEecCCeEEEEECC-CC--ceeeEeeccCCCCCCCCe-eEEEeCCCCCEEEEEecCCcEEE
Q 016458 253 VNTVKFFP-DG-NRFGTGSDDGTCRLFDIR-TG--HQLQVYYQQHGENEIPHV-TSIAFSISGRLLFAGYSNGDCYV 323 (389)
Q Consensus 253 i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~-~~--~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 323 (389)
.++|+... ++ ..+..|+.+|.|.-.-+. .. ..+..+... ...+| ..+.++++..+|++++.++.++|
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~----~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQ----QGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESS----TTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccC----CCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 56666554 22 346678889988755543 21 122333221 12356 48899999999999988876554
No 498
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.63 E-value=22 Score=30.45 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQLLD 35 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (389)
|++.+++++++.++++++++++.++++...+++..
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.17 E-value=85 Score=20.24 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
+.+.++.+++++..++.+......++..+...+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 500
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.13 E-value=55 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016458 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (389)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (389)
|...++++++++..++.++..+.+.....+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i 33 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKI 33 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!