BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016460
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus
musculus GN=Tmco4 PE=2 SV=2
Length = 631
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 184/294 (62%), Gaps = 12/294 (4%)
Query: 76 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 135
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + E +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTEGR-- 272
Query: 136 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 193
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 194 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 253
+ ++ TVL ++AAL WPA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 254 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 313
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ ++WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKHWEPFRNVVSG 450
Query: 314 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSY 365
R IN Y DW L+ +R S + +AG+QP+ +EN+D+T ++ GH Y
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLTSVVNGHLDY 504
>sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo
sapiens GN=TMCO4 PE=2 SV=1
Length = 634
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/268 (41%), Positives = 170/268 (63%), Gaps = 8/268 (2%)
Query: 102 FGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFD--QEDFVRPWE 159
FGAAGAGLTG KM +R+G+++EF F + E + +L + I ++G + F PW
Sbjct: 244 FGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGR---QLHITIAVTGWLASGKYRTFSAPWA 300
Query: 160 GQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATL 219
+ E+Y L WE+K L+ + A++ L S +A + ++ TVL ++AAL WPA+L
Sbjct: 301 ALAHSREQYCLAWEAKYLMELGNALETIL-SGLANMVAQEALKYTVLSGIVAALTWPASL 359
Query: 220 VFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAE 279
+ A++ID+ W + + RS + GK LA +L+ QG RPVTLIG+SLGARVI+ CL+ +A+
Sbjct: 360 LSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQ 419
Query: 280 NECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGL 339
+ GI+E V+LLGAP+ + ++WE RK+V+GR IN Y DW L+ +R S + +
Sbjct: 420 EKDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRV 479
Query: 340 AGIQPI--NGLGIENIDVTHLIEGHSSY 365
AG+QP+ +EN+D+T ++ GH Y
Sbjct: 480 AGLQPVLLQDRRVENVDLTSVVSGHLDY 507
>sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus
norvegicus GN=Tmco4 PE=2 SV=1
Length = 631
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 189/309 (61%), Gaps = 12/309 (3%)
Query: 76 VIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEFKAIGENQNQ 135
+IG++G A+A G+VAG + + FGAAGAGLTG KM +R+G+++EF F + + +
Sbjct: 219 IIGSAG----AAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTDGK-- 272
Query: 136 GRLAVEILISGVVFD--QEDFVRPWEGQNDNMERYVLQWESKNLIAVSTAIQDWLTSRIA 193
+L + I I+G + F PW + E+Y L WE+K L+ + A++ L S +A
Sbjct: 273 -QLHITIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETIL-SGLA 330
Query: 194 MELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQ 253
+ ++ TVL ++AAL PA+L+ A++ID+ W + + RS + GK LA +L+ Q
Sbjct: 331 NMVAQEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQ 390
Query: 254 GYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAG 313
G RPVTLIG+SLGARVI+ CL+ +A+ + GI+E VVLLGAP+ + WE R +V+G
Sbjct: 391 GRRPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSG 450
Query: 314 RFINCYATNDWTLAIAFRASLLSQGLAGIQPI--NGLGIENIDVTHLIEGHSSYLWASQL 371
R IN Y DW L+ +R S + +AG+QP+ +EN+D++ ++ GH Y +
Sbjct: 451 RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKMDV 510
Query: 372 ILERLELDT 380
IL+ + + T
Sbjct: 511 ILKAVGIRT 519
>sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans
GN=F35D11.3 PE=3 SV=2
Length = 617
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 200/370 (54%), Gaps = 25/370 (6%)
Query: 3 VASSAMAVRKAEASKEEEATSSESKWAKWKRGGIIGAAALTGGTLMAITGGLAAPAIAAG 62
+AS+ + + E+ ++ K KR +IGAA GG L+ +TGGLAAP +AA
Sbjct: 187 LASTLLEEQFVESEHSRTVREKTARNKKIKRYLMIGAAGGVGGVLIGLTGGLAAPLVAAS 246
Query: 63 FSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVD 122
L IG A + T AG+ + + G AGAG TG KM +R+G+++
Sbjct: 247 AGML----------IGG----GAVAGLATTAGAAVLGTTMGVAGAGFTGYKMKKRVGAIE 292
Query: 123 EFEFKAIGENQNQGRLAVEILISGVV----FDQEDFVRPWEGQNDNMERYVLQWESKNLI 178
EF + + E + L+ +++SG + + FV W E+Y L++ES L+
Sbjct: 293 EFSVETLSEGVS---LSCSLVVSGWIESDTSPDQAFVHQWRHLRHTKEQYTLRYESNYLM 349
Query: 179 AVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSD 238
+ AI+ +L S ++Q + T L L++A+AWP L+ + ++D+ W + V R+
Sbjct: 350 ELGNAIE-YLMSFAVSVAIQQTLLETALAGLVSAVAWPVALMSVSSVLDNPWNVCVSRAA 408
Query: 239 KAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAENECNAGIVERVVLLGAPIS 298
+ G+ LAEVL+ G RP+TLIG+SLGARVIF CL +++ + GI+E V+LLGAP++
Sbjct: 409 EVGEQLAEVLLSRSHGKRPITLIGFSLGARVIFHCLLTMSKRSESVGIIEDVILLGAPVT 468
Query: 299 IKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQPI---NGLGIENIDV 355
+ W V +V+GR IN Y DW L +R +AG PI N I N ++
Sbjct: 469 ASPKEWSKVCTVVSGRVINGYCETDWLLRFLYRTMSAQFRIAGTGPIDNRNSKKIYNYNL 528
Query: 356 THLIEGHSSY 365
+H+++GH Y
Sbjct: 529 SHIVKGHMDY 538
>sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1
Length = 778
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 195/352 (55%), Gaps = 19/352 (5%)
Query: 27 KWAKWKRGGIIGAAALTGGTLMAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAA 86
K ++ K+ ++G A + GG ++ ++ GL AP I+AG +G +G SG A +
Sbjct: 349 KVSRRKKYILMGLAGIGGGLVIGLSSGLLAPIISAG-------IGAAFTTVGLSGVATSG 401
Query: 87 SAAGTVAGSVAVAASFGA-AGAGLTGSKMARRIGSVDEFEFKAIGENQNQGRLAVEILIS 145
AG GS A+ + GA +GA + + MA R V FEF+ + Q R V + +S
Sbjct: 402 FLAG--GGSAALITAGGAISGAHIGTTGMAHRKADVKTFEFRPL---HAQRRANVIVTVS 456
Query: 146 GVVFDQEDFVRPWEGQNDNM--ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMM 203
G + +ED VR D + + Y + WE + ++A + + L + + + ++Q
Sbjct: 457 GWMLSKEDDVRLSFATLDPIVGDIYSVFWEPE-MLASAGQTMNILATEVVTQSLQQVLGS 515
Query: 204 TVLKTLLAALAWPATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGY 263
TVL +L+ AL WP L LID+ W ++DR+ G+LLA++L G RPVTL+GY
Sbjct: 516 TVLVSLMGALQWPLILTKLGYLIDNPWNNSLDRAKATGQLLADMLCYRSLGVRPVTLVGY 575
Query: 264 SLGARVIFKCLENLAENECNAGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATND 323
SLGARVI+ CL L E + I+E V L G P+ K +W +V+GRF+N Y ND
Sbjct: 576 SLGARVIYYCLREL-EKKKEFSIIENVYLFGTPVIFKRTSWLKAASVVSGRFVNGYKKND 634
Query: 324 WTLAIAFRASLLSQG-LAGIQPINGL-GIENIDVTHLIEGHSSYLWASQLIL 373
W L FRA+ G +AG++ I+ + GIENIDVT+L+ GH +Y + ++L
Sbjct: 635 WILGYLFRATSGGIGRVAGLRQIDCIPGIENIDVTNLVSGHLAYRESMPILL 686
>sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1
SV=2
Length = 1073
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 177/330 (53%), Gaps = 29/330 (8%)
Query: 56 APAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMA 115
AP I G +A T+G + GA+ F V G+ VA S A GA + M+
Sbjct: 563 APVIGGGIAAGLSTIG----ITGATSFLTG------VGGTTVVAVSSTAIGANIGARGMS 612
Query: 116 RRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVR-------PWEGQNDNMERY 168
+R+GSV FEF+ + N+ R+ + + +SG + ED VR P EG + Y
Sbjct: 613 KRMGSVRTFEFRPLHNNR---RVNLILTVSGWMVGNEDDVRLPFSTVDPVEG-----DLY 664
Query: 169 VLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATLVFAADLIDS 228
L WE + L ++ + + + I ++Q TVL L++++ WP L ++D+
Sbjct: 665 SLYWEPEMLKSIGQTVS-IVATEIFTTSLQQILGATVLTALISSIQWPMALSKLGYILDN 723
Query: 229 KWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAENECNAGIVE 288
W +++DR+ AGK+LA+ L+ G RP+TL+G+S+GARVIF CL L + + G++E
Sbjct: 724 PWNVSLDRAWSAGKILADTLIARNLGARPITLVGFSIGARVIFSCLIELCKKKA-LGLIE 782
Query: 289 RVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLS-QGLAGIQPING 347
V L G P +K + R +V+GRF+N Y+ DW LA FRA+ + GI I
Sbjct: 783 NVYLFGTPAVMKKEQLVMARSVVSGRFVNGYSDKDWFLAYLFRAAAGGFSAVMGISTIEN 842
Query: 348 L-GIENIDVTHLIEGHSSYLWASQLILERL 376
+ GIENI+ T ++GH +Y + +L+R+
Sbjct: 843 VEGIENINCTEFVDGHLNYRKSMPKLLKRI 872
>sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1
Length = 579
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 178/340 (52%), Gaps = 23/340 (6%)
Query: 51 TGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLT 110
TGGLAAP +AAG LGTL +G A + + + A FG GA ++
Sbjct: 189 TGGLAAPFVAAG-------LGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMS 241
Query: 111 GSKMARRIGSVDEFEFKAIGENQNQGRLAVEILISGVVFDQEDFVRPWE----GQNDNM- 165
+M + +FEF + Q L V I ISG + D + W+ G
Sbjct: 242 MQQMGDVSKGLTDFEFIPLSV---QSHLPVTIGISGWLGDYNEVDAAWKSLTVGDKSYYW 298
Query: 166 -ERYVLQWESKNLIAVSTAIQDWLTSRIAMELMKQGAMMTVLKTLLAALAWPATLVFAAD 224
+ Y L++E + L+ + ++ L S + + T+L L AAL WP +L+ +
Sbjct: 299 GDIYALKFEVEALVDLGKSLSRILFSAGLGWVKGEVISRTILAPLAAAL-WPLSLLKVGN 357
Query: 225 LIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLENLAEN-ECN 283
++ + W IA + S KAG+ LA L QG RPVTLIG+SLGAR I +CL +LA+ E N
Sbjct: 358 ILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTLIGFSLGARTILECLLHLADRGETN 417
Query: 284 AGIVERVVLLGAPISIKDQNWEAVRKMVAGRFINCYATNDWTLAIAFRASLLSQGLAGIQ 343
+VE V+++GAP+ + W +R +VAGRF+N Y+ +D+ L + +R + AG+
Sbjct: 418 --LVENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAAGLG 475
Query: 344 PI--NGLGIENIDVTHLIEGHSSYLW-ASQLILERLELDT 380
P+ + +EN+DV L+EGH Y W ++++ ERL D
Sbjct: 476 PVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYDN 515
>sp|Q08787|SRFAC_BACSU Surfactin synthase subunit 3 OS=Bacillus subtilis (strain 168)
GN=srfAC PE=1 SV=2
Length = 1275
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 216 PATLVFAADLIDSKWTIAVDRSDKAGKLLAEVLMQGLQGYRPVTLIGYSLGARVIFKCLE 275
P+ + A D I+ + DR D+ L+ Q LQ P+TL GYS G + F+ +
Sbjct: 1082 PSYKLCAFDFIEEE-----DRLDRYADLI-----QKLQPEGPLTLFGYSAGCSLAFEAAK 1131
Query: 276 NLAENECNAGIVERVVLLGA 295
L E IV+R++++ +
Sbjct: 1132 KLEE---QGRIVQRIIMVDS 1148
>sp|B7KC96|UVRB_CYAP7 UvrABC system protein B OS=Cyanothece sp. (strain PCC 7424) GN=uvrB
PE=3 SV=1
Length = 665
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 133 QNQGRLAVEILISGVVFDQEDFVRPWEGQNDNMERYVLQW-ESKNLIAVSTAIQDWLTSR 191
Q+QG++ +I+ V D E FVRP EGQ D++ + Q + K + ++T LT R
Sbjct: 401 QSQGQVIEQIIRPTGVLDPEIFVRPTEGQVDDLLGEIKQRIKRKERVLITT-----LTKR 455
Query: 192 IAMELMK 198
+A +L +
Sbjct: 456 MAEDLTE 462
>sp|A6BLY7|K1C28_MOUSE Keratin, type I cytoskeletal 28 OS=Mus musculus GN=Krt28 PE=1 SV=1
Length = 462
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 71 GTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGSKMARRIGSVDEFEF---- 126
G+L P G +GFA ++ A G+VAGS A G G+ GS +G+V F
Sbjct: 17 GSLRPPSGGAGFAGSSVAGGSVAGSGFSWALGGTLGSAPGGSHATGALGNVSGVCFIGSE 76
Query: 127 --------KAIGENQNQGRLAVEILISGVVFDQEDFVRPWEGQNDNMERYVLQWESK 175
K +N N RLA + D V+ E N +ER + W K
Sbjct: 77 GGLLSGNEKVTMQNLN-NRLASYL----------DNVKALEEANSELERKIKTWHEK 122
>sp|B1XXP1|PYRF_LEPCP Orotidine 5'-phosphate decarboxylase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=pyrF PE=3 SV=1
Length = 284
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 48 MAITGGLAAPAIAAGFSALAPTLGTLIPVIGASGFAAAAS--------AAGTVAGSVAVA 99
+A+ G PA A LAPTL LIP +GA G A A+ A+G G + V
Sbjct: 187 LALVVGATYPAEIARVRELAPTLPLLIPGVGAQGGDAQATVQAGLVCDASGASTGPIIVN 246
Query: 100 ASFGA--AGAGLTGSKMARRI 118
+S A AG ++ ARR+
Sbjct: 247 SSRAVLYASAGDDFAQAARRV 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,953,203
Number of Sequences: 539616
Number of extensions: 5373201
Number of successful extensions: 23838
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 23060
Number of HSP's gapped (non-prelim): 800
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)