Query 016461
Match_columns 389
No_of_seqs 142 out of 1519
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0677 Actin-related protein 100.0 3.1E-87 6.7E-92 570.7 26.4 387 1-387 1-387 (389)
2 PTZ00452 actin; Provisional 100.0 4E-86 8.6E-91 631.7 35.8 371 4-388 5-375 (375)
3 PTZ00466 actin-like protein; P 100.0 7.2E-85 1.6E-89 623.5 36.9 370 3-388 11-380 (380)
4 PTZ00281 actin; Provisional 100.0 1.7E-84 3.8E-89 622.2 34.9 372 3-388 5-376 (376)
5 KOG0676 Actin and related prot 100.0 5.1E-85 1.1E-89 603.4 26.4 367 3-388 6-372 (372)
6 PTZ00004 actin-2; Provisional 100.0 3.3E-82 7.1E-87 607.4 35.7 373 2-388 4-378 (378)
7 PTZ00280 Actin-related protein 100.0 4.3E-78 9.2E-83 586.0 36.2 384 1-388 1-410 (414)
8 KOG0679 Actin-related protein 100.0 2.1E-77 4.5E-82 536.7 27.0 368 2-388 9-426 (426)
9 PF00022 Actin: Actin; InterP 100.0 4.2E-77 9.2E-82 578.3 28.8 367 2-388 2-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 3.7E-75 7.9E-80 560.5 35.1 369 5-388 2-373 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.1E-72 2.4E-77 542.6 35.4 369 6-386 1-371 (371)
12 COG5277 Actin and related prot 100.0 3.1E-69 6.7E-74 516.9 30.9 372 3-388 4-444 (444)
13 KOG0680 Actin-related protein 100.0 2.4E-63 5.1E-68 435.8 26.9 363 2-388 1-399 (400)
14 KOG0681 Actin-related protein 100.0 1.9E-54 4.2E-59 402.7 23.1 367 2-387 21-639 (645)
15 KOG0678 Actin-related protein 100.0 2.5E-54 5.5E-59 379.5 16.2 382 1-386 1-408 (415)
16 KOG0797 Actin-related protein 100.0 4.1E-45 8.8E-50 338.2 21.3 311 64-389 177-616 (618)
17 PRK13930 rod shape-determining 100.0 7.7E-37 1.7E-41 290.1 19.9 307 6-360 10-327 (335)
18 PRK13927 rod shape-determining 100.0 4E-36 8.6E-41 285.0 18.0 306 5-360 6-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.7E-34 3.6E-39 273.4 19.1 311 6-360 4-326 (333)
20 PRK13929 rod-share determining 100.0 5.8E-34 1.3E-38 269.2 21.1 309 2-360 2-325 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 8.3E-31 1.8E-35 242.5 20.4 305 5-360 2-320 (326)
22 PRK13928 rod shape-determining 100.0 2.9E-30 6.4E-35 244.6 17.7 308 6-362 5-324 (336)
23 COG1077 MreB Actin-like ATPase 99.9 6.9E-25 1.5E-29 195.7 15.5 311 4-360 6-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 4.4E-19 9.6E-24 159.3 14.2 208 69-357 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 6.4E-17 1.4E-21 147.9 20.8 240 5-359 25-267 (267)
26 CHL00094 dnaK heat shock prote 99.7 4.9E-16 1.1E-20 158.5 18.4 214 102-362 136-377 (621)
27 TIGR01991 HscA Fe-S protein as 99.7 4.2E-16 9.2E-21 158.0 17.7 214 101-362 129-361 (599)
28 PTZ00400 DnaK-type molecular c 99.7 9E-16 2E-20 157.1 18.9 219 101-362 174-416 (663)
29 PRK13411 molecular chaperone D 99.7 5.8E-16 1.3E-20 158.4 17.5 221 101-363 133-378 (653)
30 PRK01433 hscA chaperone protei 99.7 8.9E-16 1.9E-20 154.8 18.4 207 101-362 141-357 (595)
31 PTZ00009 heat shock 70 kDa pro 99.7 2E-16 4.4E-21 161.9 13.6 217 101-363 140-383 (653)
32 PRK00290 dnaK molecular chaper 99.7 7.6E-16 1.7E-20 157.4 16.6 219 102-363 134-376 (627)
33 PLN03184 chloroplast Hsp70; Pr 99.7 1.8E-15 3.9E-20 155.0 18.5 238 81-363 151-415 (673)
34 PTZ00186 heat shock 70 kDa pre 99.7 1.8E-15 4E-20 153.9 17.9 219 101-362 160-402 (657)
35 TIGR02350 prok_dnaK chaperone 99.7 1.6E-15 3.4E-20 154.5 15.8 218 102-362 131-373 (595)
36 PRK13410 molecular chaperone D 99.7 4E-15 8.6E-20 152.0 18.5 218 102-362 136-377 (668)
37 PRK05183 hscA chaperone protei 99.7 1.9E-15 4.1E-20 153.6 15.9 212 101-362 149-377 (616)
38 PRK11678 putative chaperone; P 99.5 3.4E-13 7.4E-18 131.6 16.7 88 102-191 150-260 (450)
39 PF00012 HSP70: Hsp70 protein; 99.5 9.2E-14 2E-18 142.4 11.2 217 102-360 136-375 (602)
40 PRK09472 ftsA cell division pr 99.5 7.2E-12 1.6E-16 122.1 20.7 211 113-360 164-387 (420)
41 COG0443 DnaK Molecular chapero 99.4 2.8E-12 6.1E-17 128.9 14.9 187 5-196 6-222 (579)
42 TIGR01174 ftsA cell division p 99.3 4.9E-11 1.1E-15 114.8 12.9 174 113-319 156-339 (371)
43 COG0849 ftsA Cell division ATP 99.2 9.5E-10 2.1E-14 105.1 19.6 209 113-360 163-379 (418)
44 PRK13917 plasmid segregation p 99.1 3.6E-09 7.9E-14 100.3 18.1 188 5-197 3-233 (344)
45 TIGR01175 pilM type IV pilus a 99.1 2.3E-08 5E-13 95.5 22.4 185 80-319 93-307 (348)
46 KOG0100 Molecular chaperones G 99.0 6E-09 1.3E-13 96.1 14.9 112 102-216 173-298 (663)
47 TIGR03739 PRTRC_D PRTRC system 99.0 6.5E-09 1.4E-13 97.9 15.8 185 9-197 2-215 (320)
48 COG4820 EutJ Ethanolamine util 99.0 3.7E-10 8E-15 94.6 3.4 135 125-318 116-250 (277)
49 KOG0101 Molecular chaperones H 99.0 1.8E-08 4E-13 99.4 15.3 226 102-365 144-387 (620)
50 PF11104 PilM_2: Type IV pilus 98.9 6.3E-08 1.4E-12 92.1 17.9 186 79-319 86-299 (340)
51 KOG0104 Molecular chaperones G 98.9 4.3E-08 9.4E-13 96.9 15.1 96 101-197 158-276 (902)
52 COG4972 PilM Tfp pilus assembl 98.7 1.2E-06 2.7E-11 79.5 17.0 118 151-319 195-312 (354)
53 PRK10719 eutA reactivating fac 98.5 2.4E-05 5.2E-10 75.3 19.9 164 6-189 8-184 (475)
54 PF06406 StbA: StbA protein; 98.4 1.7E-06 3.7E-11 81.4 11.3 111 86-197 81-213 (318)
55 KOG0103 Molecular chaperones H 98.3 3.4E-05 7.4E-10 76.4 16.7 98 99-197 135-247 (727)
56 TIGR00241 CoA_E_activ CoA-subs 98.1 0.00027 5.8E-09 64.1 17.3 105 79-195 33-138 (248)
57 KOG0102 Molecular chaperones m 98.0 0.00025 5.5E-09 68.5 15.6 197 102-317 161-376 (640)
58 TIGR03286 methan_mark_15 putat 97.7 0.00023 5.1E-09 67.6 9.8 47 295-360 356-402 (404)
59 TIGR02261 benz_CoA_red_D benzo 97.7 0.00078 1.7E-08 60.7 12.0 50 296-359 213-262 (262)
60 COG1924 Activator of 2-hydroxy 97.6 0.0011 2.5E-08 61.7 12.9 44 298-360 346-389 (396)
61 TIGR03192 benz_CoA_bzdQ benzoy 97.5 0.0031 6.7E-08 57.8 13.4 50 293-360 238-287 (293)
62 PF06277 EutA: Ethanolamine ut 97.4 0.0037 8.1E-08 60.5 14.0 129 69-201 51-204 (473)
63 PF08841 DDR: Diol dehydratase 96.0 0.046 1E-06 49.1 9.0 93 114-216 94-191 (332)
64 TIGR03706 exo_poly_only exopol 95.6 0.1 2.2E-06 48.7 10.1 86 102-191 73-165 (300)
65 PRK11031 guanosine pentaphosph 95.5 0.06 1.3E-06 53.9 8.6 79 109-189 85-170 (496)
66 PRK03011 butyrate kinase; Prov 95.3 2.1 4.5E-05 41.0 17.9 25 5-29 3-27 (358)
67 TIGR02259 benz_CoA_red_A benzo 95.2 0.13 2.7E-06 49.1 9.1 52 294-359 381-432 (432)
68 PF01869 BcrAD_BadFG: BadF/Bad 94.9 0.08 1.7E-06 48.6 7.1 83 81-173 42-130 (271)
69 COG0248 GppA Exopolyphosphatas 94.7 0.062 1.4E-06 53.3 6.0 75 114-190 87-168 (492)
70 TIGR03123 one_C_unchar_1 proba 94.5 0.43 9.4E-06 44.6 10.7 28 146-173 125-152 (318)
71 PRK10854 exopolyphosphatase; P 94.3 0.32 6.9E-06 49.0 10.2 79 109-189 90-175 (513)
72 TIGR00744 ROK_glcA_fam ROK fam 93.3 7.1 0.00015 36.5 18.5 52 120-173 89-147 (318)
73 COG1548 Predicted transcriptio 92.6 0.73 1.6E-05 41.1 8.2 24 148-171 129-152 (330)
74 PF02541 Ppx-GppA: Ppx/GppA ph 92.2 0.28 6.1E-06 45.4 5.5 78 111-190 67-151 (285)
75 PF14450 FtsA: Cell division p 91.8 0.79 1.7E-05 36.3 7.0 56 152-218 2-68 (120)
76 PF07318 DUF1464: Protein of u 91.2 0.92 2E-05 42.5 7.6 34 146-179 151-184 (343)
77 COG4819 EutA Ethanolamine util 91.1 1.9 4.1E-05 40.0 9.4 113 69-185 53-179 (473)
78 PF01968 Hydantoinase_A: Hydan 90.7 0.32 6.9E-06 45.2 4.2 33 141-173 68-101 (290)
79 PRK09557 fructokinase; Reviewe 90.3 15 0.00033 34.1 18.4 53 120-174 88-147 (301)
80 COG2441 Predicted butyrate kin 89.9 0.65 1.4E-05 41.8 5.2 165 149-362 163-333 (374)
81 PRK13317 pantothenate kinase; 88.9 0.42 9.1E-06 44.0 3.5 52 293-360 221-273 (277)
82 TIGR02707 butyr_kinase butyrat 87.4 27 0.00059 33.3 16.5 25 150-175 175-199 (351)
83 PRK13321 pantothenate kinase; 85.5 17 0.00037 32.9 12.0 19 6-24 2-20 (256)
84 PRK13324 pantothenate kinase; 82.9 28 0.00061 31.6 12.0 19 6-24 2-20 (258)
85 COG1521 Pantothenate kinase ty 82.6 21 0.00046 32.2 10.9 19 6-24 2-20 (251)
86 PRK13318 pantothenate kinase; 80.4 21 0.00046 32.3 10.5 18 6-23 2-19 (258)
87 PF03309 Pan_kinase: Type III 79.8 7.1 0.00015 34.1 7.0 18 7-24 2-19 (206)
88 TIGR00671 baf pantothenate kin 74.7 37 0.00081 30.5 10.2 18 7-24 2-19 (243)
89 KOG2708 Predicted metalloprote 67.4 85 0.0018 27.9 10.1 113 81-198 51-172 (336)
90 PRK13326 pantothenate kinase; 66.0 89 0.0019 28.5 10.7 20 5-24 7-26 (262)
91 COG0145 HyuA N-methylhydantoin 59.4 9.4 0.0002 39.7 3.5 32 142-173 269-302 (674)
92 PRK05082 N-acetylmannosamine k 56.1 1.6E+02 0.0035 26.9 11.0 50 122-173 90-145 (291)
93 cd08627 PI-PLCc_gamma1 Catalyt 55.0 25 0.00055 31.2 4.9 44 81-130 74-117 (229)
94 cd08626 PI-PLCc_beta4 Catalyti 53.4 26 0.00056 31.7 4.9 44 81-130 76-119 (257)
95 PF08735 DUF1786: Putative pyr 52.7 1.6E+02 0.0034 26.7 9.6 58 134-193 145-212 (254)
96 cd08630 PI-PLCc_delta3 Catalyt 52.6 28 0.0006 31.6 4.9 44 81-130 74-117 (258)
97 cd08632 PI-PLCc_eta1 Catalytic 52.0 29 0.00063 31.2 4.9 43 81-129 74-116 (253)
98 cd08596 PI-PLCc_epsilon Cataly 51.9 29 0.00062 31.4 4.9 43 81-129 74-116 (254)
99 cd08594 PI-PLCc_eta Catalytic 51.2 31 0.00066 30.6 4.8 43 81-129 74-116 (227)
100 PF03702 UPF0075: Uncharacteri 50.7 8.4 0.00018 36.9 1.4 25 296-320 286-310 (364)
101 cd08595 PI-PLCc_zeta Catalytic 50.7 30 0.00065 31.3 4.8 44 81-130 74-117 (257)
102 cd08629 PI-PLCc_delta1 Catalyt 50.1 31 0.00068 31.2 4.8 44 81-130 74-117 (258)
103 cd08593 PI-PLCc_delta Catalyti 50.1 30 0.00066 31.3 4.8 44 81-130 74-117 (257)
104 cd08592 PI-PLCc_gamma Catalyti 50.0 32 0.00069 30.6 4.8 44 81-130 74-117 (229)
105 cd08631 PI-PLCc_delta4 Catalyt 49.9 31 0.00067 31.2 4.8 43 81-129 74-116 (258)
106 smart00842 FtsA Cell division 49.4 55 0.0012 27.9 6.2 22 71-92 36-57 (187)
107 cd08633 PI-PLCc_eta2 Catalytic 49.2 34 0.00074 30.9 4.9 43 81-129 74-116 (254)
108 cd08591 PI-PLCc_beta Catalytic 48.7 34 0.00073 31.0 4.8 43 81-129 76-118 (257)
109 cd08598 PI-PLC1c_yeast Catalyt 48.7 34 0.00073 30.5 4.8 44 81-130 74-117 (231)
110 PRK09698 D-allose kinase; Prov 47.6 38 0.00083 31.3 5.4 52 120-173 96-153 (302)
111 PRK14101 bifunctional glucokin 47.4 96 0.0021 32.3 8.7 24 122-145 99-122 (638)
112 TIGR03367 queuosine_QueD queuo 45.8 28 0.0006 26.0 3.3 50 73-129 42-91 (92)
113 PRK00292 glk glucokinase; Prov 45.4 2.6E+02 0.0056 26.0 11.0 47 122-169 84-147 (316)
114 cd08597 PI-PLCc_PRIP_metazoa C 44.7 40 0.00087 30.6 4.7 44 81-130 74-117 (260)
115 PRK13310 N-acetyl-D-glucosamin 44.4 30 0.00065 32.0 4.1 53 120-174 88-147 (303)
116 cd08558 PI-PLCc_eukaryota Cata 44.2 44 0.00096 29.6 4.8 44 81-130 74-117 (226)
117 PRK05082 N-acetylmannosamine k 42.1 35 0.00076 31.4 4.1 20 5-24 2-21 (291)
118 cd08628 PI-PLCc_gamma2 Catalyt 41.7 51 0.0011 29.8 4.8 44 81-130 74-117 (254)
119 KOG1386 Nucleoside phosphatase 41.6 2.2E+02 0.0047 28.4 9.3 87 81-168 65-181 (501)
120 cd08623 PI-PLCc_beta1 Catalyti 39.1 59 0.0013 29.5 4.8 44 81-130 76-120 (258)
121 KOG1794 N-Acetylglucosamine ki 39.0 3.1E+02 0.0068 25.4 9.3 93 80-173 46-144 (336)
122 PRK13320 pantothenate kinase; 38.2 3E+02 0.0065 24.7 11.6 19 6-24 4-22 (244)
123 cd08624 PI-PLCc_beta2 Catalyti 37.8 62 0.0013 29.4 4.8 44 81-130 76-120 (261)
124 cd08599 PI-PLCc_plant Catalyti 37.0 72 0.0016 28.4 5.0 43 81-129 74-116 (228)
125 cd08625 PI-PLCc_beta3 Catalyti 35.6 63 0.0014 29.3 4.5 44 81-130 76-120 (258)
126 COG4012 Uncharacterized protei 34.2 2.5E+02 0.0055 25.6 7.8 45 149-195 227-274 (342)
127 smart00732 YqgFc Likely ribonu 33.6 48 0.001 24.6 3.0 19 5-23 2-20 (99)
128 PRK09585 anmK anhydro-N-acetyl 33.0 32 0.0007 32.9 2.4 23 297-319 289-311 (365)
129 TIGR01174 ftsA cell division p 31.6 1.2E+02 0.0025 29.1 6.0 22 71-92 37-58 (371)
130 TIGR00555 panK_eukar pantothen 29.7 44 0.00095 30.8 2.5 68 274-357 209-278 (279)
131 PLN02952 phosphoinositide phos 29.4 91 0.002 32.1 4.9 44 81-130 196-239 (599)
132 smart00732 YqgFc Likely ribonu 29.1 1.5E+02 0.0033 21.8 5.1 45 151-195 3-48 (99)
133 PLN02230 phosphoinositide phos 28.6 92 0.002 32.0 4.8 44 81-130 187-230 (598)
134 PLN02222 phosphoinositide phos 28.3 88 0.0019 32.0 4.6 44 81-130 176-219 (581)
135 TIGR01319 glmL_fam conserved h 27.7 36 0.00078 33.6 1.7 71 102-172 175-272 (463)
136 PRK09417 mogA molybdenum cofac 27.3 58 0.0012 28.2 2.7 20 298-317 70-106 (193)
137 COG1070 XylB Sugar (pentulose 26.1 55 0.0012 32.9 2.8 24 1-24 1-24 (502)
138 PLN02228 Phosphoinositide phos 26.1 1.1E+02 0.0024 31.2 4.9 44 81-130 179-222 (567)
139 TIGR03192 benz_CoA_bzdQ benzoy 26.0 1.2E+02 0.0027 28.0 4.8 47 151-199 34-83 (293)
140 PLN02223 phosphoinositide phos 25.5 1.2E+02 0.0025 30.8 4.8 45 81-130 179-223 (537)
141 KOG1138 Predicted cleavage and 24.5 1.6E+02 0.0035 29.4 5.3 84 74-163 303-403 (653)
142 PTZ00340 O-sialoglycoprotein e 24.4 43 0.00092 31.9 1.5 109 81-192 51-167 (345)
143 PF02685 Glucokinase: Glucokin 24.2 2E+02 0.0043 27.1 5.9 85 79-169 34-150 (316)
144 PF09693 Phage_XkdX: Phage unc 24.2 37 0.00081 21.0 0.7 10 368-377 25-34 (40)
145 PF00370 FGGY_N: FGGY family o 23.9 57 0.0012 29.0 2.2 19 6-24 2-20 (245)
146 PRK13333 pantothenate kinase; 23.5 1.1E+02 0.0023 26.9 3.7 29 138-169 75-103 (206)
147 COG0533 QRI7 Metal-dependent p 23.0 56 0.0012 30.9 2.0 107 81-189 52-167 (342)
148 TIGR01669 phage_XkdX phage unc 22.8 42 0.00091 21.4 0.8 10 368-377 30-39 (45)
149 KOG1794 N-Acetylglucosamine ki 22.7 1.1E+02 0.0024 28.3 3.7 74 274-362 243-317 (336)
150 PF13941 MutL: MutL protein 22.2 69 0.0015 31.7 2.5 74 101-174 178-273 (457)
151 KOG0169 Phosphoinositide-speci 21.8 1.4E+02 0.0031 31.2 4.7 43 81-129 361-403 (746)
152 PRK13310 N-acetyl-D-glucosamin 21.7 6.2E+02 0.014 23.1 11.7 69 275-360 233-301 (303)
153 PF02782 FGGY_C: FGGY family o 21.4 77 0.0017 27.0 2.5 46 295-360 150-195 (198)
154 PF13941 MutL: MutL protein 21.4 71 0.0015 31.7 2.4 24 6-29 2-27 (457)
155 TIGR00039 6PTHBS 6-pyruvoyl te 20.7 1.3E+02 0.0028 23.8 3.4 52 73-129 44-95 (124)
156 PRK00047 glpK glycerol kinase; 20.2 91 0.002 31.3 3.1 24 1-24 2-25 (498)
No 1
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=3.1e-87 Score=570.75 Aligned_cols=387 Identities=69% Similarity=1.191 Sum_probs=377.1
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccCh
Q 016461 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNW 80 (389)
Q Consensus 1 m~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 80 (389)
||+.++||.|+||.++|+||||++.|..+||+.+|+|..+...+.++...+++.+|++|.+.++.+++.||+.+|.+.||
T Consensus 1 Md~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnw 80 (389)
T KOG0677|consen 1 MDSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNW 80 (389)
T ss_pred CCCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccCh
Confidence 89999999999999999999999999999999999998887766667777899999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCc
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV 160 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~ 160 (389)
|+++++|+|.|.++|++++.+.++++++||++|.++|+++++.+||+++|.++|+.-++++++|+.|..||+|||.|-+.
T Consensus 81 ddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGV 160 (389)
T KOG0677|consen 81 DDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGV 160 (389)
T ss_pred HHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCccccee
Q 016461 161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240 (389)
Q Consensus 161 t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (389)
|+|+||++|+++++..++++++|++++++|.++|..+|+.++.+.+++.++.+||++||++.|++.+.++..+++....+
T Consensus 161 THi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~ 240 (389)
T KOG0677|consen 161 THIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVES 240 (389)
T ss_pred eEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHH
Q 016461 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILD 320 (389)
Q Consensus 241 ~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~ 320 (389)
|+||||..|.++.|||.+||.||+|..++.+.+++++++..+||..++|.|..++++|+|+||++..||+..||++||++
T Consensus 241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkq 320 (389)
T KOG0677|consen 241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQ 320 (389)
T ss_pred eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccC
Q 016461 321 RYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCG 387 (389)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~ 387 (389)
++.+..++|++..+.++++++..||.|++.+|+||+++|..+...+++|+||+||+|.|.+++.|+.
T Consensus 321 lyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~~ 387 (389)
T KOG0677|consen 321 LYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKLG 387 (389)
T ss_pred HHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhhc
Confidence 9999999999999999999999999999999999999999779999999999999999999998864
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=4e-86 Score=631.68 Aligned_cols=371 Identities=36% Similarity=0.698 Sum_probs=342.3
Q ss_pred CCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhhH
Q 016461 4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 83 (389)
Q Consensus 4 ~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~ 83 (389)
+++||||+||.++|+||||++.|++++||.+|+++.+.... ....+++++|+++...+..+++++|+++|.|.|||++
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~ 82 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIF--STFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDI 82 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccc--cccccceEEChhhhccccCcEEcccCcCCEEcCHHHH
Confidence 36899999999999999999999999999999987643111 1113467899999887888899999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceEE
Q 016461 84 GQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHV 163 (389)
Q Consensus 84 e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v 163 (389)
|.+|+|+|.+.|++++.++|+++++|+++++..|++++|++||.|++|++++.+++++++|++|++||+|||+|++.|+|
T Consensus 83 e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v 162 (375)
T PTZ00452 83 EIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHC 162 (375)
T ss_pred HHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEEC
Q 016461 164 VPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTL 243 (389)
Q Consensus 164 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 243 (389)
+||+||++++++..++++||.+++++|.++|..+++.+....+.+.++++|+++||++.|++.+.+...........|+|
T Consensus 163 ~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L 242 (375)
T PTZ00452 163 VPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL 242 (375)
T ss_pred EEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC
Confidence 99999999999999999999999999999999888777666678899999999999999988776543333445678999
Q ss_pred CCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhh
Q 016461 244 PDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYL 323 (389)
Q Consensus 244 pdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~ 323 (389)
|||+.|.++.|||.+||+||+|+.++.+..+|+++|.++|++||+|.|+.|++||||+||+|++|||.+||++||..+
T Consensus 243 PDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~-- 320 (375)
T PTZ00452 243 PDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNL-- 320 (375)
T ss_pred CCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 324 EVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.|.. .+++|..+++|++++|+||||+|+ +++|+++||||+||+|+|+++++|||+
T Consensus 321 ------~p~~---~~v~v~~~~~r~~~aW~GgSilas-l~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 321 ------VPSQ---LKIQVAAPPDRRFSAWIGGSIQCT-LSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred ------CCCC---ceeEEecCCCcceeEEECchhhcC-ccchhhhEeEHHHHhccCcceeeeecC
Confidence 6654 578999999999999999999999 999999999999999999999999995
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=7.2e-85 Score=623.51 Aligned_cols=370 Identities=41% Similarity=0.778 Sum_probs=340.3
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhh
Q 016461 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (389)
Q Consensus 3 ~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 82 (389)
+..+||||+||+++|+||+|++.|++++||++|+++...... +...+++++|+++...+....+++|+++|.|.|||.
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~--~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMA--GAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWND 88 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccc--cCCCCCeEECchhhhhCcCceeCccccCCeECCHHH
Confidence 356899999999999999999999999999999987653211 122346899999987777788999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceE
Q 016461 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (389)
Q Consensus 83 ~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (389)
+|.+|+|+| +.|++++.++|+++++++++++..|+++++++||.|++|++++.++++||+|++|++||+|||+|++.|+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
|+||+||+++.+++.++++||++++++|+++|.+++..+....+.++++++|+++|||+.|+..+.+.. ........|+
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~-~~~~~~~~y~ 246 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS-EKALTTLPYI 246 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-cccccceeEE
Confidence 999999999999999999999999999999999888777666788999999999999999987665432 2223357899
Q ss_pred CCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhh
Q 016461 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRY 322 (389)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~ 322 (389)
||||+.|.++.|||.+||+||+|+.++.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||++||..+
T Consensus 247 LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l- 325 (380)
T PTZ00466 247 LPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKF- 325 (380)
T ss_pred CCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 323 LEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.|.. .+++|..+++|++++|+|||++|+ +++|+++||||+||+|+|+++++|||+
T Consensus 326 -------~p~~---~~v~v~~~~~r~~~aW~GgSilas-l~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 326 -------APKD---ITIRISAPPERKFSTFIGGSILAS-LATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred -------CCCC---ceEEEecCCCCceeEEECchhhcC-ccchhhhEeEHHHHhhhCcHhheeecC
Confidence 6654 578899999999999999999999 999999999999999999999999985
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.7e-84 Score=622.18 Aligned_cols=372 Identities=44% Similarity=0.840 Sum_probs=342.9
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhh
Q 016461 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (389)
Q Consensus 3 ~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 82 (389)
+.++||||+||.++|+||||++.|+.++||.+++++...... +.+.+++++|+++...+....+++|+++|.|.|||+
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~ 82 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMV--GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 82 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCccccc--CcccCCeEECchhhccccCcEEeccCcCCEEcCHHH
Confidence 456899999999999999999999999999999887653221 122346789999887777889999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceE
Q 016461 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (389)
Q Consensus 83 ~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (389)
++.+|+|+|.+.|.++++++||++++|+++++..|+++++++||.|++|++++.+++++++|++|++||+|||+|++.|+
T Consensus 83 ~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (376)
T PTZ00281 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH 162 (376)
T ss_pred HHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
|+||+||+++.+++.++++||++++++|.++|.++++.+....+.++++++|+++|||+.|++.+.+...........|.
T Consensus 163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 99999999999999999999999999999999988877766677899999999999999998776654333344567899
Q ss_pred CCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhh
Q 016461 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRY 322 (389)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~ 322 (389)
||||+.|.++.|||.+||+||+|+.++.+..+|+++|.++|.+||+|.|+.|++||||+||+|++|||.+||++||..+
T Consensus 243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~- 321 (376)
T PTZ00281 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTAL- 321 (376)
T ss_pred CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 323 LEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.|.. .+++|..+++|++++|+|||++|+ +++|+++||||+||+|+|+++++|||+
T Consensus 322 -------~p~~---~~v~v~~~~~r~~~aW~Ggsilas-l~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 322 -------APST---MKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred -------CCCC---cceEEecCCCCceeEEECcccccC-cccHhhceeeHHHHhhhCchheeeecC
Confidence 6654 578899989999999999999999 999999999999999999999999995
No 5
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=5.1e-85 Score=603.36 Aligned_cols=367 Identities=46% Similarity=0.872 Sum_probs=342.8
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhh
Q 016461 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (389)
Q Consensus 3 ~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 82 (389)
+.++||||+||.++|+||+|++.|+.++||.++++++...+. +...++.++|+++...+ .++||+++|.|.|||+
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~--~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMA--GMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccc--cccccccccchhhhccc---cccCccccccccchHH
Confidence 357999999999999999999999999999999988765543 44556889999998777 7799999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceE
Q 016461 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (389)
Q Consensus 83 ~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (389)
++.||.|+|.+.|.++|+++||++++|+++|+..||++++++||.|++|++++..++++ |++|++||+|||+|++.|+
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999665555 9999999999999999999
Q ss_pred EEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
++||+||+++++++.++++||+++++++...|.++++.+....+.++++++|+++||++.|+++|.............|.
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999988888888889999999999999999999988776334455566799
Q ss_pred CCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhh
Q 016461 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRY 322 (389)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~ 322 (389)
+|||+.|.++++||.+||+||+|+.++.+..+|++++..+|.+||+|+|+.|++||+|+||++.+|||.+||++||..+
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l- 317 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQAL- 317 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 323 LEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.|.. .+++|..+|++.+++|+||||+|+ +++|+++||||+||+|+|++++|||||
T Consensus 318 -------~P~~---~~ikv~~pp~r~~s~WlGgSIlas-lstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 318 -------APST---IKIKVIAPPERKYSAWLGGSILAS-LSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred -------CCCC---cceEEecCcccccceecCceeEee-cchHhhccccHHHHhhhCCceeeeccC
Confidence 6765 779999999999999999999999 999999999999999999999999997
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=3.3e-82 Score=607.36 Aligned_cols=373 Identities=45% Similarity=0.840 Sum_probs=340.9
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChh
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 81 (389)
++.++||||+||.++|+||+|++.|++++||++++++.+.... +...+.+++|+++...+....+++|+++|.|.|||
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d 81 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMV--GMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWD 81 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEeccccccc--CcCCCceEECchhhcccccceEcccCcCCEEcCHH
Confidence 4567899999999999999999999999999999987643221 12234688999987767778899999999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCce
Q 016461 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (389)
Q Consensus 82 ~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (389)
.++.+|+|+|.+.|++++.++||++++|+++++..|+++++++||.|+++++++.+++++++|++|++||+|||+|++.|
T Consensus 82 ~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t 161 (378)
T PTZ00004 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 161 (378)
T ss_pred HHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccC-ccccee
Q 016461 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET-TILVKN 240 (389)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~-~~~~~~ 240 (389)
+|+||+||+++.++..++++||++++++|.++|..++..+....+.++++++|+++|||+.|+.++.+..... ......
T Consensus 162 ~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~ 241 (378)
T PTZ00004 162 HTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEES 241 (378)
T ss_pred EEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceE
Confidence 9999999999999999999999999999999999988777666678899999999999999988776532211 223578
Q ss_pred EECCCCcEEEECccccccccccCCCCCCCCC-CCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHH
Q 016461 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEIL 319 (389)
Q Consensus 241 ~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~ 319 (389)
|.||||+.+.++.+||.+||+||+|+.++.+ ..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||++||.
T Consensus 242 y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~ 321 (378)
T PTZ00004 242 YELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELT 321 (378)
T ss_pred EECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHH
Confidence 9999999999999999999999999998888 889999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 320 DRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.+ .|.. .+++|..+++|++++|+|||++|+ +++|+++||||+||+|+|+++++|||+
T Consensus 322 ~~--------~p~~---~~~~v~~~~~~~~~aW~Ggsilas-~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 322 TL--------APST---MKIKVVAPPERKYSVWIGGSILSS-LPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred Hh--------CCCC---ccEEEecCCCCceeEEECcccccC-ccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99 6654 568888888999999999999999 999999999999999999999999995
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.3e-78 Score=586.00 Aligned_cols=384 Identities=36% Similarity=0.616 Sum_probs=335.7
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhh-hhhccCCceEeccccccccCcceeeccccCCcccC
Q 016461 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEES-LMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQN 79 (389)
Q Consensus 1 m~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d 79 (389)
|+..++||||+||.++|+||+|++.|++++||++++++...... .......++++|+++...+..+.+++|+++|.|.|
T Consensus 1 ~~~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~d 80 (414)
T PTZ00280 1 ASTLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVED 80 (414)
T ss_pred CCCCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCC
Confidence 77788999999999999999999999999999999886532100 00111236889999988777789999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhc----------CCc
Q 016461 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ----------GLL 149 (389)
Q Consensus 80 ~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~ 149 (389)
||.+|.+|+|+|.+.|.+++.++++++++|+++++..|++++|++||.|++|++++..++++|+|++ |++
T Consensus 81 wd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 9999999999998999999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHh
Q 016461 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ 229 (389)
Q Consensus 150 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 229 (389)
||+|||+|++.|+|+||+||+++.++.+++++||++++++|.++|.+++..+....+.++++++|+++||++.|+..+.+
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~ 240 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766556688999999999999999877765
Q ss_pred hccc-CcccceeEECCC---Cc--EEEECccccccccccCCCCCCCCC-CCChHHHHHHHHHhCChhHHHHhhcCeEEec
Q 016461 230 LGLE-TTILVKNYTLPD---GR--VIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIVLSG 302 (389)
Q Consensus 230 ~~~~-~~~~~~~~~lpd---g~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~G 302 (389)
.... +......|.+|| |+ .+.++.+||.+||+||+|+.++.. ..+|+++|.++|++||+|.|+.|++||+|+|
T Consensus 241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G 320 (414)
T PTZ00280 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG 320 (414)
T ss_pred HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence 4221 122345688887 33 899999999999999999987655 4599999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhhcC--------CCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHH
Q 016461 303 GSTMYPGLPSRLEKEILDRYLEVVLKG--------NKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDD 374 (389)
Q Consensus 303 G~s~i~G~~~rl~~el~~~~~~~~~~~--------~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~e 374 (389)
|+|++|||.+||++||.+++.....+. .|. ..+++|..++++++++|+||||+|+ +++|+++||||+|
T Consensus 321 G~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~~~~~~~~W~GgSilas-~~~f~~~~itk~e 396 (414)
T PTZ00280 321 GSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPI---PIDVNVVSHPRQRYAVWYGGSMLAS-SPEFEKVCHTKAE 396 (414)
T ss_pred CcccCcCHHHHHHHHHHHhccccccccccccccccCCC---CceEEEecCCccceeEEEChhhccc-CcchhhheEEHHH
Confidence 999999999999999999853210000 122 2578888888999999999999999 9999999999999
Q ss_pred HhhcCcccccccCC
Q 016461 375 YLEEGIACLSKCGP 388 (389)
Q Consensus 375 y~e~G~~~l~~k~~ 388 (389)
|+|+|+++++|+.+
T Consensus 397 Y~E~G~~i~~~~~~ 410 (414)
T PTZ00280 397 YDEYGPSICRYNNV 410 (414)
T ss_pred HhccChHheeeccc
Confidence 99999999999754
No 8
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.1e-77 Score=536.67 Aligned_cols=368 Identities=31% Similarity=0.555 Sum_probs=318.0
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccc-cccCcceeeccccCCcccCh
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAAL-DLRHQLDVSYPVNNGIVQNW 80 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~p~~~g~i~d~ 80 (389)
+|-.+||||+||+++|+||||++.|++++||.+|...+.... ....+.++++.++. ..|...+++.|+++|.+.||
T Consensus 9 dEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d---~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 9 DEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD---AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred cccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc---cccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 456789999999999999999999999999999964322211 11223478888775 45778899999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCc
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV 160 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~ 160 (389)
|.++.+|+|+|.++|.++|.++|++|+||++++++.|++++|++||.|+||+++++++++|++|+.|+.||||||||+.+
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCc---------------------------------hH
Q 016461 161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTA---------------------------------DF 207 (389)
Q Consensus 161 t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~---------------------------------~~ 207 (389)
|+|+||+||+++.+++.++++||+.|+..+++.|..+++++.... ..
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~ 245 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQ 245 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875543210 12
Q ss_pred HHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCC------------CCCCCh
Q 016461 208 ETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELID------------VEGDGM 275 (389)
Q Consensus 208 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~------------~~~~~l 275 (389)
.+.+++|++++.++...-.+.. ..+...++|++|||....++.+||++||.||+|+.+. ....++
T Consensus 246 ~v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~ 322 (426)
T KOG0679|consen 246 RVYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGL 322 (426)
T ss_pred HHHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCc
Confidence 3455566666655522211111 1236678999999999999999999999999998653 234689
Q ss_pred HHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCC---CCcceee
Q 016461 276 ADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPP---RRKHMVY 352 (389)
Q Consensus 276 ~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~---~~~~~~w 352 (389)
++++..+|..||+|+|..|+.|||+|||+|.|+||.+||.+||..+ .|. .+++++... +|++++|
T Consensus 323 ~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~--------~P~----srlki~as~~t~eR~~~~W 390 (426)
T KOG0679|consen 323 PHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKR--------APS----SRLKIIASGHTVERRFQSW 390 (426)
T ss_pred hHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHh--------CCc----ceEEEEecCceeeehhhhh
Confidence 9999999999999999999999999999999999999999999999 665 367776643 8899999
Q ss_pred ehHHHHhcCCCCCCcccccHHHHhhcCc-ccccccCC
Q 016461 353 LGGAVLAGIMKDAPEFWISRDDYLEEGI-ACLSKCGP 388 (389)
Q Consensus 353 ~Gasi~a~~l~~~~~~~itr~ey~e~G~-~~l~~k~~ 388 (389)
+||||+|+ |++|+++||+|+||||.|. +.++|||+
T Consensus 391 lGGSILAS-LgtFqq~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 391 LGGSILAS-LGTFQQLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred hhhHHHhc-cccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence 99999999 9999999999999999999 99999996
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=4.2e-77 Score=578.35 Aligned_cols=367 Identities=40% Similarity=0.741 Sum_probs=319.7
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChh
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 81 (389)
|+.++||||+||.++|+||+|++.|+.++|+.++++...... .++++|+++........+++|+++|.+.||+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 74 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSS-------NDYYVGDEALSPRSNLELRSPIENGVIVDWD 74 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSS-------SSCEETHHHHHTGTGEEEEESEETTEESSHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccc-------eeEEeecccccchhheeeeeecccccccccc
Confidence 578899999999999999999999999999999987764321 1678898865556777899999999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCce
Q 016461 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (389)
Q Consensus 82 ~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (389)
.++.+|+++|.+.|.+++.+++|++++|+++++..|+++++++||.|++++++++++++||+|++|.+||+|||+|++.|
T Consensus 75 ~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t 154 (393)
T PF00022_consen 75 ALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSST 154 (393)
T ss_dssp HHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-E
T ss_pred ccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeee
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCC-----------------ccCchHHHHHHHHHhcceeccCh
Q 016461 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSM-----------------NRTADFETVRQIKEKLCYISYDY 224 (389)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----------------~~~~~~~~~~~ik~~~~~v~~~~ 224 (389)
+|+||+||+++.+++.++++||++++++|+++|.+++..+ ....+..+++++|++.|+++.+.
T Consensus 155 ~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~ 234 (393)
T PF00022_consen 155 SVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDP 234 (393)
T ss_dssp EEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSH
T ss_pred eeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccc
Confidence 9999999999999999999999999999999999874332 22245789999999999999988
Q ss_pred HHHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCC-------ChHHHHHHHHHhCChhHHHHhhcC
Q 016461 225 KREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGD-------GMADMVFRCIQEMDIDNRMMLYQH 297 (389)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~-------~l~~~i~~~i~~~~~d~r~~l~~n 297 (389)
..+. ...........|.+|||+.+.++.+|+.+||+||+|+..+.+.. +|+++|.++|++||+|.|+.|++|
T Consensus 235 ~~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~n 313 (393)
T PF00022_consen 235 DEEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSN 313 (393)
T ss_dssp HHHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTT
T ss_pred cccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccc
Confidence 7511 11123556678999999999999999999999999998887766 999999999999999999999999
Q ss_pred eEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCC-CCcceeeehHHHHhcCCCCCCcccccHHHHh
Q 016461 298 IVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPP-RRKHMVYLGGAVLAGIMKDAPEFWISRDDYL 376 (389)
Q Consensus 298 Ivl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~ 376 (389)
|+|+||+|++|||.+||++||..+ .|.. .+++|..++ +|.+++|+|||++|+ +.+|+++||||+||+
T Consensus 314 Ivl~GG~S~i~G~~eRL~~eL~~~--------~~~~---~~~~v~~~~~~~~~~aW~Ggsilas-l~~f~~~~itr~eYe 381 (393)
T PF00022_consen 314 IVLTGGSSLIPGFKERLQQELRSL--------LPSS---TKVKVIAPPSDRQFAAWIGGSILAS-LSSFQSFWITREEYE 381 (393)
T ss_dssp EEEESGGGGSTTHHHHHHHHHHHH--------SGTT---STEEEE--T-TTTSHHHHHHHHHHT-SGGGGGTSEEHHHHH
T ss_pred eEEecccccccchHHHHHHHhhhh--------hhcc---ccceeccCchhhhhcccccceeeec-cccccceeeeHHHHh
Confidence 999999999999999999999998 5554 578999888 999999999999999 999999999999999
Q ss_pred hcCcccccccCC
Q 016461 377 EEGIACLSKCGP 388 (389)
Q Consensus 377 e~G~~~l~~k~~ 388 (389)
|+|+++++|||+
T Consensus 382 E~G~~~i~rkc~ 393 (393)
T PF00022_consen 382 EYGPSIIHRKCF 393 (393)
T ss_dssp HHGGGGHHHHT-
T ss_pred CcCcceeeecCC
Confidence 999999999995
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=3.7e-75 Score=560.45 Aligned_cols=369 Identities=51% Similarity=0.924 Sum_probs=335.8
Q ss_pred CeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhhHH
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~e 84 (389)
++||||+||+++|+||++++.|++++||++++++...... ...+.+++|+++.+.+....+++|+++|.+.||+.++
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~---~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e 78 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMV---GDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDME 78 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEeccccccc---CCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHH
Confidence 5899999999999999999999999999999876542110 1223678999987666666899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceEEE
Q 016461 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (389)
Q Consensus 85 ~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~ 164 (389)
.+|+++|.+.|++++.++++++++|.++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 79 ~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 158 (373)
T smart00268 79 KIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV 158 (373)
T ss_pred HHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence 99999998799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhccc---CcccceeE
Q 016461 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKNY 241 (389)
Q Consensus 165 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~ 241 (389)
||+||+++.++.+++++||++++++|.++|+.++..+....+.+.++++|+++|+++.++..+.+.... .......|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (373)
T smart00268 159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY 238 (373)
T ss_pred EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence 999999999999999999999999999999886655655667889999999999999988776554321 23445789
Q ss_pred ECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHh
Q 016461 242 TLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDR 321 (389)
Q Consensus 242 ~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~ 321 (389)
.+|||+.+.++.+|+.+||.||+|+.++.+..+|+++|.++|++||+|.|+.|++||+|+||+|++|||.+||++||..+
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 322 YLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
.|.. .++++..++++.+++|.|||++|+ +++|+++||||+||+|+|+++++|||+
T Consensus 319 --------~p~~---~~v~v~~~~~~~~~~W~G~silas-~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 319 --------APKK---LKVKVIAPPERKYSVWLGGSILAS-LSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred --------CCCC---ceeEEecCCCCccceEeCcccccC-ccchhhhEEEHHHHhhhCcceEEeecC
Confidence 5643 568888888999999999999999 999999999999999999999999996
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.1e-72 Score=542.57 Aligned_cols=369 Identities=50% Similarity=0.898 Sum_probs=332.2
Q ss_pred eEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccC-cceeeccccCCcccChhhHH
Q 016461 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRH-QLDVSYPVNNGIVQNWEDMG 84 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~p~~~g~i~d~~~~e 84 (389)
+||||+||+++|+||+|++.|++++||++++++...... +.+...+++|+++...+. ...+++|+++|.+.||+.++
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~--~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e 78 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMV--GAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDME 78 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccccc--ccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence 689999999999999999999999999999886543211 122347899999876554 37889999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceEEE
Q 016461 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (389)
Q Consensus 85 ~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~ 164 (389)
.+|+++|.+.+..++.++++++++|+++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 158 (371)
T cd00012 79 KIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVV 158 (371)
T ss_pred HHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEE
Confidence 99999998888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHh-hcccCcccceeEEC
Q 016461 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ-LGLETTILVKNYTL 243 (389)
Q Consensus 165 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~-~~~~~~~~~~~~~l 243 (389)
||+||+++.++..++++||+++++++.++|+.++..+....+.+.++++|+++||++.++..+.+ ...........|.+
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 238 (371)
T cd00012 159 PVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL 238 (371)
T ss_pred EEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEEC
Confidence 99999999999999999999999999999998887666667889999999999999988876642 11233445678999
Q ss_pred CCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhh
Q 016461 244 PDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYL 323 (389)
Q Consensus 244 pdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~ 323 (389)
||++.+.++.+||.+||+||+|+.++....+|+++|.++|++||.+.|+.+++||+|+||+|++|||.+||+++|..+
T Consensus 239 pd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~-- 316 (371)
T cd00012 239 PDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKL-- 316 (371)
T ss_pred CCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHh--
Confidence 999999999999999999999999888889999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCccccccc
Q 016461 324 EVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKC 386 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k 386 (389)
.|.. +...+++...++|.+++|.|||++|+ +++|+++||||+||+|+|+++++||
T Consensus 317 ------~~~~-~~~~~~~~~~~~~~~~aw~G~si~as-~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 317 ------APPS-KDTKVKVIAPPERKYSVWLGGSILAS-LSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred ------CCcc-cceEEEEccCCCccccEEeCchhhcC-chhhhheEeeHHHHhhhCchhEecC
Confidence 4531 12567777788999999999999999 9999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.1e-69 Score=516.86 Aligned_cols=372 Identities=43% Similarity=0.771 Sum_probs=332.2
Q ss_pred CCCe-EEEeCCCceEEEeecCCCCCccccccceEecC-cchhhhhhhccCCceEeccccccccC--cceeeccccCCccc
Q 016461 3 NRNV-VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPM-LRYEESLMEQELKDTIVGAAALDLRH--QLDVSYPVNNGIVQ 78 (389)
Q Consensus 3 ~~~~-iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~ 78 (389)
.+.+ ||||+||..+|+||+|++.|++++|+++++.+ +...+. ....++.++|+++...+. ..++++|+++|.|.
T Consensus 4 ~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~--~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~ 81 (444)
T COG5277 4 DNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVME--DTEEKDTYVGNEAQNDRDNSLLELRYPIENGIIL 81 (444)
T ss_pred CCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccc--cccccccccCchhhhccCCccceeecccccCccC
Confidence 3444 99999999999999999999999999999886 222211 233457789998876554 67899999999999
Q ss_pred ChhhHHHHHHHHhhh--cCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCc--eEEEE
Q 016461 79 NWEDMGQVWDHAFFS--ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL--TGLVI 154 (389)
Q Consensus 79 d~~~~e~~l~~~~~~--~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVV 154 (389)
||++++++|+|+|.+ .+..++.++|+++++|++++...|+++++++||.++++++++..+++|++|+.|.. +|+||
T Consensus 82 ~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~Vi 161 (444)
T COG5277 82 NWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVI 161 (444)
T ss_pred CcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEE
Confidence 999999999999988 68888999999999999999999999999999999999999999999999999999 99999
Q ss_pred EcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHh-----cCCCCccC---chHHHHHHHHHhcc-------e
Q 016461 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSR-----RGYSMNRT---ADFETVRQIKEKLC-------Y 219 (389)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~ 219 (389)
|+|++.|+|+||+||.++.+++.++++||++++.+|.++|.. +++.+... .+.+.++.+|++.| |
T Consensus 162 D~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y 241 (444)
T COG5277 162 DSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAY 241 (444)
T ss_pred EcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccc
Confidence 999999999999999999999999999999999999999998 55555554 67899999999999 8
Q ss_pred eccChHHHHhhccc----------------CcccceeEECCCCcEEEECcc-ccccccccCCCC--CCCCCCCC------
Q 016461 220 ISYDYKREYQLGLE----------------TTILVKNYTLPDGRVIKVGTE-RFQAPEALFTPE--LIDVEGDG------ 274 (389)
Q Consensus 220 v~~~~~~~~~~~~~----------------~~~~~~~~~lpdg~~i~i~~~-~~~~~E~lF~p~--~~~~~~~~------ 274 (389)
+..+.+++.+...+ .......+.+|++..+.++.+ ||.+||.||+|+ ..+.+.++
T Consensus 242 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~ 321 (444)
T COG5277 242 VSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESK 321 (444)
T ss_pred hhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhh
Confidence 88776554432211 333456789999999999998 999999999999 77766655
Q ss_pred ---------------------hHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCC
Q 016461 275 ---------------------MADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDG 333 (389)
Q Consensus 275 ---------------------l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~ 333 (389)
|++++.++|+.||.+.|+.|++||||+||+|++|||.+||+++|+.+ .|..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~--------~p~~ 393 (444)
T COG5277 322 QELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSL--------APSI 393 (444)
T ss_pred hhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhh--------cCCC
Confidence 99999999999999999999999999999999999999999999999 6654
Q ss_pred CcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCC
Q 016461 334 LKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 334 ~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
..+.|..+++|.+.+|+|||++|+ +++|+++||||+||+|+|++++++||+
T Consensus 394 ---~~v~v~~~~~~~~~~W~GaSila~-~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 394 ---WKVSVIPPPDPSLDAWLGASILAS-LETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred ---CceeeecCCchhhccccchhhhcc-ccchhheEeeHHHhhhhhhHHHhhccC
Confidence 789999999999999999999999 999999999999999999999999985
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=2.4e-63 Score=435.82 Aligned_cols=363 Identities=27% Similarity=0.488 Sum_probs=319.4
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEecccccccc--CcceeeccccCCcccC
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR--HQLDVSYPVNNGIVQN 79 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~g~i~d 79 (389)
|+..+||+|+|++++|+|++++..|. ++|+++.+.+... +..++|++..+++ +.+.+++|+++|.+.+
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~---------rr~f~~nei~ec~D~ssL~y~rp~erGyLvn 70 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGR---------RRSFLANEIDECKDISSLFYRRPHERGYLVN 70 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCce-eccchhhhccccc---------chhhhhhhhhhccCccceEEeehhhcceeEe
Confidence 35679999999999999999999998 6699987665432 2467777765543 4466788999999999
Q ss_pred hhhHHHHHHHHhhhc-CCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhc---C--------
Q 016461 80 WEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ---G-------- 147 (389)
Q Consensus 80 ~~~~e~~l~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g-------- 147 (389)
|+.-.++|+|+|.+. ++++..++.+++++|.++-+...+...+++||+++|.+++=...+.++++-. +
T Consensus 71 W~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~ 150 (400)
T KOG0680|consen 71 WDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTS 150 (400)
T ss_pred ehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccc
Confidence 999999999999532 3356789999999999999999999999999999999999999999888752 1
Q ss_pred CceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHH
Q 016461 148 LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKRE 227 (389)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~ 227 (389)
...++|||.|++.|+|+|+++|.+..++++++++||+.+|.+|++.+..++++. ..+..+++++||.+|||+.|+.++
T Consensus 151 ~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNv--mdET~vVNeiKEdvcfVSqnF~~~ 228 (400)
T KOG0680|consen 151 SECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNV--MDETYVVNEIKEDVCFVSQNFKED 228 (400)
T ss_pred cceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcc--cchhhhhhhhhhheEEechhhHHH
Confidence 125899999999999999999999999999999999999999999998887543 467889999999999999999888
Q ss_pred HhhcccC---cccceeEECCC-------------------CcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHh
Q 016461 228 YQLGLET---TILVKNYTLPD-------------------GRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQE 285 (389)
Q Consensus 228 ~~~~~~~---~~~~~~~~lpd-------------------g~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~ 285 (389)
++.+... +.....|.||| .+.|.++.|||.+||+||+|++++..+.|++++|.+||+.
T Consensus 229 m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~ 308 (400)
T KOG0680|consen 229 MDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSM 308 (400)
T ss_pred HHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHh
Confidence 7665432 23456678876 3578899999999999999999999999999999999999
Q ss_pred CChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCC
Q 016461 286 MDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDA 365 (389)
Q Consensus 286 ~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~ 365 (389)
||.+.|+.|+.|||++||+++.|||.+||..||+.+ .|.. ..++|..+.+|..-+|.||+-++. ..+|
T Consensus 309 ~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l--------~P~d---~~v~V~~p~dp~~~~W~~g~~~~~-~~~~ 376 (400)
T KOG0680|consen 309 LPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSL--------LPAD---WEVSVSVPEDPITFAWEGGSEFAK-TDSF 376 (400)
T ss_pred CHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhh--------CCcc---ceEEEecCCCcceeeehhcccccc-Ccch
Confidence 999999999999999999999999999999999999 7877 789999999999999999999999 8999
Q ss_pred CcccccHHHHhhcCcccccccCC
Q 016461 366 PEFWISRDDYLEEGIACLSKCGP 388 (389)
Q Consensus 366 ~~~~itr~ey~e~G~~~l~~k~~ 388 (389)
...||||+||+|+|.++..+|.+
T Consensus 377 ~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 377 EKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred hcceecHhhHhhcCchhhhhhcc
Confidence 99999999999999999988754
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.9e-54 Score=402.74 Aligned_cols=367 Identities=29% Similarity=0.461 Sum_probs=310.6
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCc-ceeeccccCCcccCh
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQ-LDVSYPVNNGIVQNW 80 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~ 80 (389)
....|||||+||+.+||||+|+..|+.+|++++.+++++...+. ...||++....... ...++|+.+.+|+||
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s------~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNw 94 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGAS------VTLVGNDILNFQGVRSSPRSPFDRNVVTNW 94 (645)
T ss_pred cCCCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccc------cccccchhhhhhhhhccCCCCCcCCccccH
Confidence 44578999999999999999999999999999999987654331 23677665432211 256889999999999
Q ss_pred hhHHHHHHHHhhhcCCCCC--CCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhc-C---CceEEEE
Q 016461 81 EDMGQVWDHAFFSELKIDP--PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ-G---LLTGLVI 154 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~--~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g---~~tglVV 154 (389)
+.+|.+++|+| .+||++. -+||+++||+..+|...|..+.++|||.+|+|+|.+.-+++.++|.. + ..+|+||
T Consensus 95 el~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~lii 173 (645)
T KOG0681|consen 95 ELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLII 173 (645)
T ss_pred HHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEE
Confidence 99999999999 8999987 47999999999999999999999999999999999999999999943 3 3479999
Q ss_pred EcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhh----
Q 016461 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL---- 230 (389)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~---- 230 (389)
++|++.|+|.||.||..+...++++++||.+...||.++|+.+..-+....++...+.++..+||++.||.++...
T Consensus 174 s~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~ 253 (645)
T KOG0681|consen 174 SMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEM 253 (645)
T ss_pred ecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999987665556677888888888888888876433210
Q ss_pred ------------------------------------------------cc-------------------cC-c-ccceeE
Q 016461 231 ------------------------------------------------GL-------------------ET-T-ILVKNY 241 (389)
Q Consensus 231 ------------------------------------------------~~-------------------~~-~-~~~~~~ 241 (389)
.. .. + .....|
T Consensus 254 d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~ 333 (645)
T KOG0681|consen 254 DYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKF 333 (645)
T ss_pred hhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhc
Confidence 00 00 0 000000
Q ss_pred EC------------------------------------------------------------------------------
Q 016461 242 TL------------------------------------------------------------------------------ 243 (389)
Q Consensus 242 ~l------------------------------------------------------------------------------ 243 (389)
.|
T Consensus 334 ~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e 413 (645)
T KOG0681|consen 334 PLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQE 413 (645)
T ss_pred hhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ---------------------------------CC---------------------------------------------
Q 016461 244 ---------------------------------PD--------------------------------------------- 245 (389)
Q Consensus 244 ---------------------------------pd--------------------------------------------- 245 (389)
||
T Consensus 414 ~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~ 493 (645)
T KOG0681|consen 414 LKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVE 493 (645)
T ss_pred hhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccc
Confidence 00
Q ss_pred ----------------CcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCC
Q 016461 246 ----------------GRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPG 309 (389)
Q Consensus 246 ----------------g~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G 309 (389)
..++.++.|++.+||++|+|+++|.+++||.+++..++++.|-+.+..|.+||+||||+|.+||
T Consensus 494 ~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pG 573 (645)
T KOG0681|consen 494 GTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPG 573 (645)
T ss_pred cccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcC
Confidence 0245678899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccC
Q 016461 310 LPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCG 387 (389)
Q Consensus 310 ~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~ 387 (389)
+.+||..+|..+ .|.. ++++|+...+|...||.||+.+|. -.+|..-|+||+||+|+|+..++..|
T Consensus 574 mkeRi~kElt~m--------rP~g---S~i~V~rasdP~LDAW~GA~~~a~-n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 574 MKERIKKELTSM--------RPVG---SSINVVRASDPVLDAWRGASAWAA-NPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred HHHHHHHHhhee--------cccC---CceEEEecCCcchhhhhhhHHhhc-CcccchhhhhHHhhhhhhHHHHHHHh
Confidence 999999999999 6765 789999999999999999999999 69999999999999999998877644
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.5e-54 Score=379.53 Aligned_cols=382 Identities=36% Similarity=0.586 Sum_probs=318.1
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhh------hhccCCceEeccccccccCcceeeccccC
Q 016461 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESL------MEQELKDTIVGAAALDLRHQLDVSYPVNN 74 (389)
Q Consensus 1 m~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~------~~~~~~~~~vg~~~~~~~~~~~~~~p~~~ 74 (389)
|..+.++|+|+|+.+.|.||+|...|.+++|++++.......+.. .+...-++++|++++. ...+.+.||+++
T Consensus 1 ~~~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRh 79 (415)
T KOG0678|consen 1 MAGNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRH 79 (415)
T ss_pred CCCCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceec
Confidence 445667999999999999999999999999999865422111100 1222347899999987 567889999999
Q ss_pred CcccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcC-------
Q 016461 75 GIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG------- 147 (389)
Q Consensus 75 g~i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g------- 147 (389)
|.+.|||.+|++|...+.+.|...|++|-.+|++|+.+++++|+.+++++||.|+++.+++.-++++|+-+.-
T Consensus 80 g~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~e 159 (415)
T KOG0678|consen 80 GQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE 159 (415)
T ss_pred cccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred -CceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHH
Q 016461 148 -LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKR 226 (389)
Q Consensus 148 -~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~ 226 (389)
.-||+|+|.|.+.|+|.||.||+++-++++..|+.|++++..+.++|+.++..++...+.+.++.+|+.+||+..|+-.
T Consensus 160 r~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivk 239 (415)
T KOG0678|consen 160 RFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVK 239 (415)
T ss_pred heeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHH
Confidence 3689999999999999999999999999999999999999999999998887777777899999999999999988766
Q ss_pred HHhhcc-cCcccceeEEC---CCC--cEEEECccccccccccCCCCCCCCC-CCChHHHHHHHHHhCChhHHHHhhcCeE
Q 016461 227 EYQLGL-ETTILVKNYTL---PDG--RVIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIV 299 (389)
Q Consensus 227 ~~~~~~-~~~~~~~~~~l---pdg--~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIv 299 (389)
|..... ++..-.+.|+- -.| ..++++-+||..||++|+|.+...+ ..++++.+...|+.||+|.|+.||+||+
T Consensus 240 ef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~niv 319 (415)
T KOG0678|consen 240 EFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIV 319 (415)
T ss_pred HHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHh
Confidence 654321 11111112211 122 2367788999999999999987654 4579999999999999999999999999
Q ss_pred EecCCCCCCChHHHHHHHHHHhhhhh-----hhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCCCcccccHHH
Q 016461 300 LSGGSTMYPGLPSRLEKEILDRYLEV-----VLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDD 374 (389)
Q Consensus 300 l~GG~s~i~G~~~rl~~el~~~~~~~-----~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~~~~~itr~e 374 (389)
+.||++..++|.+|++++++.+.... .+.|... ++..+++.....+++++|.|+|++++ ...|...+=||++
T Consensus 320 lsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~--~~vdvqvish~~qr~avwfggs~las-tpef~~~~~tk~~ 396 (415)
T KOG0678|consen 320 LSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKS--KPVDVQVLSHLLQRTAVWFGGSKLAS-TPEFVPACHTKED 396 (415)
T ss_pred hccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCC--CCceeehhhhhhhhcceeccCccccC-CcccccccCcchh
Confidence 99999999999999999998887532 1222111 12456777777778999999999999 8999999999999
Q ss_pred HhhcCccccccc
Q 016461 375 YLEEGIACLSKC 386 (389)
Q Consensus 375 y~e~G~~~l~~k 386 (389)
|+|+|++|.+..
T Consensus 397 yee~g~si~r~~ 408 (415)
T KOG0678|consen 397 YEEYGPSICRTN 408 (415)
T ss_pred hhhhChhhhhcC
Confidence 999999998764
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-45 Score=338.19 Aligned_cols=311 Identities=24% Similarity=0.389 Sum_probs=251.3
Q ss_pred CcceeeccccCCcccC----------hhhHHHHHHHHhhhcCCCCC---CCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 64 HQLDVSYPVNNGIVQN----------WEDMGQVWDHAFFSELKIDP---PECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 64 ~~~~~~~p~~~g~i~d----------~~~~e~~l~~~~~~~l~~~~---~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
..+.+++|+++|.+.. .+++++||+|++.+.|.+.+ .++.++++.|..+.+.+.+.++.++|-+|+|
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3567899999998743 36799999999999999976 4789999999999999999999999999999
Q ss_pred CeeeeehhhHHHHhhcCCceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCC-----ccCc
Q 016461 131 AGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSM-----NRTA 205 (389)
Q Consensus 131 ~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----~~~~ 205 (389)
.++.++++++||+||+|..++||||||++.|+|+||.||.+++++...+++||.++++.|..+|++.++++ ....
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987553 4578
Q ss_pred hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCC----cEEEECccccccccccCCCCCCCC-----------
Q 016461 206 DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDG----RVIKVGTERFQAPEALFTPELIDV----------- 270 (389)
Q Consensus 206 ~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg----~~i~i~~~~~~~~E~lF~p~~~~~----------- 270 (389)
++.+++++|+++|......-... . ..-.+.-||+ .++.++.|...+|-.||.|.++..
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ-~------~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~ 409 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQ-L------TVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSF 409 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhh-h------hhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhcccccccccccc
Confidence 99999999999998764321110 0 0001111221 123334444455555555432110
Q ss_pred --------------------------------------------------------------------------------
Q 016461 271 -------------------------------------------------------------------------------- 270 (389)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (389)
T Consensus 410 ~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i 489 (618)
T KOG0797|consen 410 PQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASI 489 (618)
T ss_pred CCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhh
Confidence
Q ss_pred --------CC----CChHHHHHHHHHhC-ChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcce
Q 016461 271 --------EG----DGMADMVFRCIQEM-DIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKL 337 (389)
Q Consensus 271 --------~~----~~l~~~i~~~i~~~-~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~ 337 (389)
.. ..+.+.|..+|..+ ..|.++.+++.|.++||+...||+.+.|++.+.+.. -|.+.+..
T Consensus 490 ~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~-------pp~~~~I~ 562 (618)
T KOG0797|consen 490 MNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAI-------PPGREAID 562 (618)
T ss_pred hcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccC-------CccccccC
Confidence 00 23445677777775 568999999999999999999999999999998773 23344557
Q ss_pred eEEEeCCC---CCcceeeehHHHHhcCCCCCCcccccHHHHhhcCcccccccCCC
Q 016461 338 RLRIEDPP---RRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGIACLSKCGPS 389 (389)
Q Consensus 338 ~v~v~~~~---~~~~~~w~Gasi~a~~l~~~~~~~itr~ey~e~G~~~l~~k~~~ 389 (389)
.|.|+.+| +|++.+|+||+|+|. |..-.++||+++||..+|.++++.||+|
T Consensus 563 ~VsVip~prdMdp~~VaWKGaaIla~-l~~~~ELwI~~~dW~~~G~RvL~~k~~f 616 (618)
T KOG0797|consen 563 TVSVIPPPRDMDPQFVAWKGAAILAI-LDFVRELWIENSDWQVHGVRVLQYKKYF 616 (618)
T ss_pred ceeecCCCcCCCchheEecchhhhhH-HHHHHHHheechhHhhhhhhhhhhcccc
Confidence 78898877 789999999999999 9999999999999999999999999986
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.7e-37 Score=290.12 Aligned_cols=307 Identities=19% Similarity=0.191 Sum_probs=239.0
Q ss_pred eEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc----cCcceeeccccCCcccChh
Q 016461 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~ 81 (389)
.++||+||+++|+|++++. +.+..||+++..... .+.+++|++|... .....+.+|+++|.+.||+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~---------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 79 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT---------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFE 79 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC---------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHH
Confidence 4999999999999999775 566789999875421 1257899998754 2446788999999999999
Q ss_pred hHHHHHHHHhhhcCCC-CCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEE
Q 016461 82 DMGQVWDHAFFSELKI-DPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (389)
Q Consensus 82 ~~e~~l~~~~~~~l~~-~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 155 (389)
.++.+|+|++.+.+.. .....+++++.|..++...|+.+.+ +||.++++.++++++|+||+|++|. .+++|||
T Consensus 80 ~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvD 158 (335)
T PRK13930 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 158 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEE
Confidence 9999999999544443 2336789999999999888877776 6899999999999999999999987 5789999
Q ss_pred cCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCc
Q 016461 156 SGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETT 235 (389)
Q Consensus 156 iG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~ 235 (389)
+|+++|+++++.+|.++. ....++||.++++.+.+++..+. .+ ..+.+.++++|+++|++..+...+. . ...
T Consensus 159 iG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~~~~~~-~--~~~ 230 (335)
T PRK13930 159 IGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPLDEEES-M--EVR 230 (335)
T ss_pred eCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCCCCCce-E--EEE
Confidence 999999999999998876 56789999999999999987652 22 2356789999999998876532210 0 000
Q ss_pred ccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcC-eEEecCCCCCCChHHHH
Q 016461 236 ILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGLPSRL 314 (389)
Q Consensus 236 ~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~~rl 314 (389)
.....+.+|+ .+.++.+++. |++|.|- ..+.+.|.+++++++.+.+..+++| |+|+||+|++|||.+||
T Consensus 231 ~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l 300 (335)
T PRK13930 231 GRDLVTGLPK--TIEISSEEVR--EALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLL 300 (335)
T ss_pred CccCCCCCCe--eEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHH
Confidence 0011122333 4667766664 7777652 2688999999999999999999998 99999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 315 EKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 315 ~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
++++.. ++. ...+|..+.-.||++++.
T Consensus 301 ~~~~~~-----------------~v~--~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 301 SEETGL-----------------PVH--IAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHCC-----------------Cce--ecCCHHHHHHHHHHHHHh
Confidence 998741 122 233567888899999987
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4e-36 Score=284.95 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=233.4
Q ss_pred CeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc----cCcceeeccccCCcccCh
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~ 80 (389)
+.|+||+||+++|+|++|++. .+.+||+++.++... +.+++|++|... .....+.+|+++|.+.||
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~---------~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~ 75 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK---------KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADF 75 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC---------eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCH
Confidence 469999999999999999876 568999999875421 246899998754 355678899999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCCC-eEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEE
Q 016461 81 EDMGQVWDHAFFSELKIDPPEC-KILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~-~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVV 154 (389)
+..+.+|++++.+.+.. ...+ .++++.|. +....+++.++.+|+.++++.++++++|++|++++|. ++++||
T Consensus 76 ~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~-~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvv 153 (334)
T PRK13927 76 DVTEKMLKYFIKKVHKN-FRPSPRVVICVPS-GITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVV 153 (334)
T ss_pred HHHHHHHHHHHHHHhhc-cCCCCcEEEEeCC-CCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEE
Confidence 99999999999777666 5445 56666665 4456666788899999999999999999999999987 467999
Q ss_pred EcCCCceEEEEe-eCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhccc
Q 016461 155 DSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE 233 (389)
Q Consensus 155 DiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~ 233 (389)
|+|+++|+++++ .+|..... ..++||+++|+.|.+++.++. .+ ..+.+.++++|+++|++..+.+... . .
T Consensus 154 DiGggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~~~~~~~-~--~ 224 (334)
T PRK13927 154 DIGGGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYPGDEVLE-M--E 224 (334)
T ss_pred EeCCCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCCCCCCce-E--E
Confidence 999999999999 67766543 358999999999999887542 11 2456789999999998764321010 0 0
Q ss_pred CcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcC-eEEecCCCCCCChHH
Q 016461 234 TTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGLPS 312 (389)
Q Consensus 234 ~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~~ 312 (389)
.......+.+|+ .+.++.++|. |++|+|- ..+.+.|.++|++++.+.+..++++ |+|+||+|++||+.+
T Consensus 225 ~~~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~ 294 (334)
T PRK13927 225 VRGRDLVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDK 294 (334)
T ss_pred EeCcccCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHH
Confidence 000000122332 4667777764 6777652 2688999999999999988888875 999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 313 RLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 313 rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
||++++. .++.+ ..+|..++-.||++++.
T Consensus 295 ~l~~~~~-----------------~~v~~--~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 295 LLSEETG-----------------LPVHV--AEDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHHC-----------------CCcEe--cCCHHHHHHHHHHHHHh
Confidence 9999873 11222 34567889999999987
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.7e-34 Score=273.39 Aligned_cols=311 Identities=18% Similarity=0.151 Sum_probs=234.3
Q ss_pred eEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc----cCcceeeccccCCcccChh
Q 016461 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~ 81 (389)
-|-||+||.++++-..+ ..-.+..||+++....+. +...+.+.+|++|... .....+++|+++|.+.||+
T Consensus 4 ~~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~-----~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 77 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRD-----AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFE 77 (333)
T ss_pred eeEEecCcceEEEEECC-CCEEEecCCEEEEecCCC-----CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHH
Confidence 38999999999995433 333456789988653321 0011247799998764 3567789999999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCC-CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEE
Q 016461 82 DMGQVWDHAFFSELKIDPPE-CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (389)
Q Consensus 82 ~~e~~l~~~~~~~l~~~~~~-~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 155 (389)
.++.+|+|++.+.+...... .++++++|..++...|+. ++.+||.++++.++++++|++|+|++|. .+++|||
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvD 156 (333)
T TIGR00904 78 VTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVD 156 (333)
T ss_pred HHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEE
Confidence 99999999997666532222 269999999999988887 6668899999999999999999999997 6899999
Q ss_pred cCCCceEEEEe-eCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccC
Q 016461 156 SGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (389)
Q Consensus 156 iG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 234 (389)
+|+++|++++| .+|..... ..++||+++|+.|.+++.++. ....+.+.++++|+++|++..+..++... +.
T Consensus 157 iG~gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~---~~~~~~~~ae~lK~~l~~~~~~~~~~~~~--~~ 228 (333)
T TIGR00904 157 IGGGTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY---NLLIGEQTAERIKIEIGSAYPLNDEPRKM--EV 228 (333)
T ss_pred cCCCeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHhccccccccccce--ee
Confidence 99999999999 77766553 458999999999999887542 22345678999999999876542211110 00
Q ss_pred cccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhc-CeEEecCCCCCCChHHH
Q 016461 235 TILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGSTMYPGLPSR 313 (389)
Q Consensus 235 ~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~~r 313 (389)
......+.+|++. .++.+ .+.|++|+|- .++.+.|.+++++++.+.+..+++ +|+|+||+|++||+.+|
T Consensus 229 ~~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~ 298 (333)
T TIGR00904 229 RGRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKL 298 (333)
T ss_pred cCccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHH
Confidence 0111234556543 44433 4668888762 258899999999999999999997 79999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 314 LEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 314 l~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
|++++. . .+....+|..++-.||++++.
T Consensus 299 l~~~~~-~------------------~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 299 LSKETG-L------------------PVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHC-C------------------CceecCChHHHHHHHHHHHHh
Confidence 999874 1 222334678899999999986
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=5.8e-34 Score=269.18 Aligned_cols=309 Identities=15% Similarity=0.232 Sum_probs=235.7
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEecccccccc----CcceeeccccCCcc
Q 016461 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR----HQLDVSYPVNNGIV 77 (389)
Q Consensus 2 ~~~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i 77 (389)
-....+-||+||.++++ |..+..=....||+++..... ..-+.+|++|.... ....+.+|+++|.|
T Consensus 2 ~~~~~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~---------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I 71 (335)
T PRK13929 2 FQSTEIGIDLGTANILV-YSKNKGIILNEPSVVAVDTET---------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVI 71 (335)
T ss_pred CCCCeEEEEcccccEEE-EECCCcEEecCCcEEEEECCC---------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCcc
Confidence 33456999999999998 443322123478888764221 11368999997643 55677899999999
Q ss_pred cChhhHHHHHHHHhhh---cCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcC-----Cc
Q 016461 78 QNWEDMGQVWDHAFFS---ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG-----LL 149 (389)
Q Consensus 78 ~d~~~~e~~l~~~~~~---~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~ 149 (389)
.|||..+.+|++++.+ .++......++++++|+.++..+|+.+.+ +|+.++++.+.++++|++|++++| ..
T Consensus 72 ~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~ 150 (335)
T PRK13929 72 ADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPV 150 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCc
Confidence 9999999999999963 56666656799999999999999999999 889999999999999999999997 46
Q ss_pred eEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHh
Q 016461 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ 229 (389)
Q Consensus 150 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 229 (389)
+++|||+|+++|+++++..|.++. ....++||+++++.|.+.+.+. +.+. .+.+.++++|+++|++..+.+.+..
T Consensus 151 ~~lvvDiG~gtt~v~vi~~~~~~~--~~~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~~~ 225 (335)
T PRK13929 151 ANVVVDIGGGTTEVAIISFGGVVS--CHSIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPETM 225 (335)
T ss_pred eEEEEEeCCCeEEEEEEEeCCEEE--ecCcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCceE
Confidence 799999999999999994443333 3457899999999999998753 2222 3467899999999988654321100
Q ss_pred hcccCcccceeEECCCCcEEEECccccc--cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhc-CeEEecCCCC
Q 016461 230 LGLETTILVKNYTLPDGRVIKVGTERFQ--APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGSTM 306 (389)
Q Consensus 230 ~~~~~~~~~~~~~lpdg~~i~i~~~~~~--~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~ 306 (389)
+.......+.+| ..+.++.+++. ++|.+|+ +.+.|.++|++|+.+.+..+++ +|+||||+|+
T Consensus 226 ---~v~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~ 290 (335)
T PRK13929 226 ---EVRGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGAL 290 (335)
T ss_pred ---EEeCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhh
Confidence 000001112333 46788877776 5788885 9999999999999999999998 6999999999
Q ss_pred CCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 307 YPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 307 i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
+|||.+||++++. .| +.+ ..+|..++-.|+..+-.
T Consensus 291 lpgl~e~l~~~~~----------~~-------v~~--~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 291 LNGIKEWLSEEIV----------VP-------VHV--AANPLESVAIGTGRSLE 325 (335)
T ss_pred hhhHHHHHHHHHC----------CC-------cee--CCCHHHHHHHHHHHHHH
Confidence 9999999999984 11 222 34667888999988755
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=8.3e-31 Score=242.47 Aligned_cols=305 Identities=17% Similarity=0.215 Sum_probs=225.4
Q ss_pred CeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc----cCcceeeccccCCcccCh
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~ 80 (389)
+-+-||+||.++++ |..+..=.+..||+++.+.... +-+.+|++|.+. .....+.+|+++|+|.|+
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~---------~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~ 71 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTG---------KILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADY 71 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT-----------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCCC---------eEEEEhHHHHHHhhcCCCccEEEccccCCcccCH
Confidence 46899999999999 6555555667899998765421 246789998653 456789999999999999
Q ss_pred hhHHHHHHHHhhhcCCC-CCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEE
Q 016461 81 EDMGQVWDHAFFSELKI-DPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~-~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVV 154 (389)
+..+.++++.+++..+- ......+++..|.-.+..+|+.+.+.+- ..++..++++++|++|++|+|. ...+||
T Consensus 72 ~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miV 150 (326)
T PF06723_consen 72 EAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIV 150 (326)
T ss_dssp HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEE
Confidence 99999999999777764 3455679999999999999999999985 5999999999999999999985 467999
Q ss_pred EcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccC
Q 016461 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (389)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 234 (389)
|||+++|.++.+..|-++. .+.+++||+++++.+.+.+++++ +-.....+++++|++++++....++.
T Consensus 151 DIG~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y---~l~Ig~~tAE~iK~~~g~~~~~~~~~------- 218 (326)
T PF06723_consen 151 DIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKY---NLLIGERTAEKIKIEIGSASPPEEEE------- 218 (326)
T ss_dssp EE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHH---SEE--HHHHHHHHHHH-BSS--HHHH-------
T ss_pred EECCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhh---CcccCHHHHHHHHHhcceeeccCCCc-------
Confidence 9999999999999999888 78899999999999999998874 33467899999999998876432222
Q ss_pred cccceeEECCCCc--EEEECc-cccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcC-eEEecCCCCCCCh
Q 016461 235 TILVKNYTLPDGR--VIKVGT-ERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGL 310 (389)
Q Consensus 235 ~~~~~~~~lpdg~--~i~i~~-~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~ 310 (389)
......-.+-+|. .+.++. +...+.+..+. .+.+.|.++|+++|+++..++++| |+||||+|+++||
T Consensus 219 ~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl 289 (326)
T PF06723_consen 219 SMEVRGRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGL 289 (326)
T ss_dssp EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTH
T ss_pred eEEEECccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccH
Confidence 1112223334443 345553 44455555444 499999999999999999988875 9999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 311 PSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 311 ~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
.++|++++. +.|....+|.+++-.|+..+..
T Consensus 290 ~~~i~~~~~-------------------~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 290 DEYISEETG-------------------VPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHS-------------------S-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHC-------------------CCEEEcCCHHHHHHHHHHHHHh
Confidence 999999974 2444455778999999988876
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=2.9e-30 Score=244.60 Aligned_cols=308 Identities=18% Similarity=0.177 Sum_probs=224.1
Q ss_pred eEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc--c--CcceeeccccCCcccChh
Q 016461 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL--R--HQLDVSYPVNNGIVQNWE 81 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~--~--~~~~~~~p~~~g~i~d~~ 81 (389)
-+-||+||.++++-.. +..-.+..||+++..... ..-+.+|++|... + ....+.+|+.+|.|.||+
T Consensus 5 ~~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~---------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~ 74 (336)
T PRK13928 5 DIGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT---------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYD 74 (336)
T ss_pred eeEEEcccccEEEEEC-CCCEEEccCCEEEEECCC---------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHH
Confidence 4899999999999554 333444678888764321 1135789988654 2 345667999999999999
Q ss_pred hHHHHHHHHhhhcCCCC-CCCCe-EEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEE
Q 016461 82 DMGQVWDHAFFSELKID-PPECK-ILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (389)
Q Consensus 82 ~~e~~l~~~~~~~l~~~-~~~~~-vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVV 154 (389)
..+.+|+|++ +++... ...+| +++++|..++ ..+++.++.+|+.++++.+.++++|+||++++|. .+++||
T Consensus 75 ~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~-~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVv 152 (336)
T PRK13928 75 VTEKMLKYFI-NKACGKRFFSKPRIMICIPTGIT-SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVV 152 (336)
T ss_pred HHHHHHHHHH-HHHhccCCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEE
Confidence 9999999999 444332 44566 8888877666 4566677777899999999999999999999987 679999
Q ss_pred EcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccC
Q 016461 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (389)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 234 (389)
|+|+++|+++++.+|.++. ....++||+++|+.+.+.+.++. .+ ....+.++++|++++.+..+...+. . ..
T Consensus 153 DiGggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~~~~~~~~-~--~v 224 (336)
T PRK13928 153 DIGGGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAFPGAREEE-M--EI 224 (336)
T ss_pred EeCCCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccccccCCcE-E--EE
Confidence 9999999999999997766 45789999999999999987542 22 2345689999999887643311000 0 00
Q ss_pred cccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhc-CeEEecCCCCCCChHHH
Q 016461 235 TILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGSTMYPGLPSR 313 (389)
Q Consensus 235 ~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~~r 313 (389)
......+.+|. .+.++.+++. |+++.+- ..+.+.|.+++++++.+.+...++ +|+||||+|++||+.++
T Consensus 225 ~g~~~~~~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~ 294 (336)
T PRK13928 225 RGRDLVTGLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKL 294 (336)
T ss_pred ecccccCCCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHH
Confidence 00000112232 3566666554 4444321 257888999999999888888888 79999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 314 LEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 314 l~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
|++.+.. .+....+|..++-.||++++..+
T Consensus 295 l~~~~~~-------------------~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 295 LAEETKV-------------------PVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHCC-------------------CceecCCHHHHHHHHHHHHHhch
Confidence 9988741 12223467899999999998733
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.93 E-value=6.9e-25 Score=195.73 Aligned_cols=311 Identities=18% Similarity=0.180 Sum_probs=231.1
Q ss_pred CCeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccc----cCcceeeccccCCcccC
Q 016461 4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQN 79 (389)
Q Consensus 4 ~~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d 79 (389)
++.+-||+||.++++ |..+..=....||+++...... ...-..+|++|... -++....+|+++|+|.|
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~-------~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd 77 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGK-------TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIAD 77 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecCC-------CceEEEehHHHHHHhccCCCCceEEeecCCcEeec
Confidence 357999999999999 5555555567789988655311 11246789999754 35567889999999999
Q ss_pred hhhHHHHHHHHhhhcCCCCC--CCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEE
Q 016461 80 WEDMGQVWDHAFFSELKIDP--PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (389)
Q Consensus 80 ~~~~e~~l~~~~~~~l~~~~--~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tgl 152 (389)
++..+.+++|..++..+-.. ..-.+++..|.-.+.-.|+.+-+.+ ++-+...|+++++|.+|+++.|. +..+
T Consensus 78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~m 156 (342)
T COG1077 78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSM 156 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCE
Confidence 99999999999865443232 3345888899999999999988887 56899999999999999999986 3479
Q ss_pred EEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcc
Q 016461 153 VIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGL 232 (389)
Q Consensus 153 VVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 232 (389)
|||||.++|.|..+..|-++. +.+..+||+.+++.+...++++. +..+-...++++|.+..++..+...+... .
T Consensus 157 vvDIGgGTTevaVISlggiv~--~~Sirv~GD~~De~Ii~yvr~~~---nl~IGe~taE~iK~eiG~a~~~~~~~~~~-~ 230 (342)
T COG1077 157 VVDIGGGTTEVAVISLGGIVS--SSSVRVGGDKMDEAIIVYVRKKY---NLLIGERTAEKIKIEIGSAYPEEEDEELE-M 230 (342)
T ss_pred EEEeCCCceeEEEEEecCEEE--EeeEEEecchhhHHHHHHHHHHh---CeeecHHHHHHHHHHhcccccccCCccce-e
Confidence 999999999999998888877 67889999999999999998762 33456678999999998876432211100 0
Q ss_pred cCcccceeEECCCCcEEEECcccc--ccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcC-eEEecCCCCCCC
Q 016461 233 ETTILVKNYTLPDGRVIKVGTERF--QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPG 309 (389)
Q Consensus 233 ~~~~~~~~~~lpdg~~i~i~~~~~--~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G 309 (389)
+..-.....-+| ..+.+..+.. ..-|.+. .|.+.+...+.+||+++-...+++ |+++||+|++.|
T Consensus 231 eV~Grdl~~GlP--k~i~i~s~ev~eal~~~v~----------~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrg 298 (342)
T COG1077 231 EVRGRDLVTGLP--KTITINSEEIAEALEEPLN----------GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRG 298 (342)
T ss_pred eEEeeecccCCC--eeEEEcHHHHHHHHHHHHH----------HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcC
Confidence 000001111123 2344443322 2223343 488999999999999999999999 999999999999
Q ss_pred hHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 310 LPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 310 ~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
|.+.|.++.. +.|.-.++|-.++-+|+.....
T Consensus 299 lD~~i~~et~-------------------~pv~ia~~pL~~Va~G~G~~le 330 (342)
T COG1077 299 LDRLLSEETG-------------------VPVIIADDPLTCVAKGTGKALE 330 (342)
T ss_pred chHhHHhccC-------------------CeEEECCChHHHHHhccchhhh
Confidence 9999988743 3444455677788888877765
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.81 E-value=4.4e-19 Score=159.31 Aligned_cols=208 Identities=19% Similarity=0.247 Sum_probs=156.9
Q ss_pred eccccCCcccChhhHHHHHHHHhh---hcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhh
Q 016461 69 SYPVNNGIVQNWEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYA 145 (389)
Q Consensus 69 ~~p~~~g~i~d~~~~e~~l~~~~~---~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~ 145 (389)
..|+.+|.|.|++..+.+++++.. ..++ ..-..++++.|..++..+|+.+.+.+ +..+++.+.++.++++++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence 358999999999999999999984 2333 23457999999988888888776655 66899999999999999999
Q ss_pred cCCceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChH
Q 016461 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYK 225 (389)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 225 (389)
++....+|||+|+++|+++.+.+|.++. ....++||+++++.+.+.+. .+.+.++++|.+... .
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~-----~ 168 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD-----E 168 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-----H
Confidence 9888889999999999999999998876 67789999999999876653 456788888876431 0
Q ss_pred HHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCC
Q 016461 226 REYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGST 305 (389)
Q Consensus 226 ~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s 305 (389)
.+. +...+.+.+ .+.+.|.+++++.++ +.|+||||+|
T Consensus 169 ~~~---------------------------~~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a 205 (239)
T TIGR02529 169 EEI---------------------------FPVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGAC 205 (239)
T ss_pred HHH---------------------------HHHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchh
Confidence 110 011111111 355566666665544 3699999999
Q ss_pred CCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHH
Q 016461 306 MYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAV 357 (389)
Q Consensus 306 ~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi 357 (389)
++||+.+.|++.+.. | +..+.+|.++.-.|+++
T Consensus 206 ~ipgl~e~l~~~lg~----------~---------v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLGL----------N---------VIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhCC----------C---------cccCCCCCeehhheeec
Confidence 999999999988741 1 22245778888888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.77 E-value=6.4e-17 Score=147.87 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=170.6
Q ss_pred CeEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhhHH
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~e 84 (389)
..++||+||+.+|+=.+ +..+. .++ +|+ ..+.+++.|.+.|++...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~-----~~~-------------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQ-----PVA-------------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCC-----EEE-------------------EEe---------ccccccCCCEEeeHHHHH
Confidence 46899999999997543 22222 111 111 224578899999999999
Q ss_pred HHHHHHhh---hcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCce
Q 016461 85 QVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (389)
Q Consensus 85 ~~l~~~~~---~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (389)
+.++++.. +.++.+ -..++++.|...+..++..+. -+.+..+++-..++.++.+++.+++...++|||||+++|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 99888875 234444 346777888888777777766 555889999999999999999988877899999999999
Q ss_pred EEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeE
Q 016461 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (389)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (389)
+++.+.+|.++. ....++||+++++.+.+.+. .+.+.++.+|..... ..+.
T Consensus 148 ~i~v~~~g~~~~--~~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~~~-----~~~~------------- 198 (267)
T PRK15080 148 GISILKDGKVVY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDPKH-----HKEI------------- 198 (267)
T ss_pred EEEEEECCeEEE--EecccCchHHHHHHHHHHhC---------CCHHHHHHHHhccCC-----HHHH-------------
Confidence 999999998876 56789999999999987763 346778888865320 0000
Q ss_pred ECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHh
Q 016461 242 TLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDR 321 (389)
Q Consensus 242 ~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~ 321 (389)
....+.+++ .+.+.|.+.+++.+ .+.|+||||+|++||+.+.+++.+. .
T Consensus 199 --------------~~ii~~~~~---------~i~~~i~~~l~~~~-------~~~IvLtGG~s~lpgl~e~l~~~lg-~ 247 (267)
T PRK15080 199 --------------FPVVKPVVE---------KMASIVARHIEGQD-------VEDIYLVGGTCCLPGFEEVFEKQTG-L 247 (267)
T ss_pred --------------HHHHHHHHH---------HHHHHHHHHHhcCC-------CCEEEEECCcccchhHHHHHHHHhC-C
Confidence 001111111 24445555554432 3579999999999999999998874 1
Q ss_pred hhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHh
Q 016461 322 YLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLA 359 (389)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 359 (389)
| +..+++|.+++-.|+.+++
T Consensus 248 ---------~---------v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 ---------P---------VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred ---------C---------cccCCCchHHHHHHHHhhC
Confidence 2 1224577899999998874
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.70 E-value=4.9e-16 Score=158.45 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=138.3
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEeeCCee---cc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYS---FP 173 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~---~~ 173 (389)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.-+.. +.
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 56889999999988888877765 77899999999999999998875 46799999999999998854321 12
Q ss_pred cceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEEC
Q 016461 174 HLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTL 243 (389)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 243 (389)
.+....++||.++++.|.+++.++ +.++.... -...++++|..+.... ...+.+
T Consensus 215 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i 278 (621)
T CHL00094 215 STSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINL 278 (621)
T ss_pred EEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEE
Confidence 233457899999999998876543 22221100 1123445555443110 111111
Q ss_pred C------CC-c--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHH
Q 016461 244 P------DG-R--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSR 313 (389)
Q Consensus 244 p------dg-~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~r 313 (389)
| +| . ...+..++|. ..+.+++ .+.+.|.+++.+... ...-.+.|+|+||+|++|++.+.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~ 347 (621)
T CHL00094 279 PFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDAKL--DKSDIDEVVLVGGSTRIPAIQEL 347 (621)
T ss_pred eecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--ChhhCcEEEEECCccCChHHHHH
Confidence 1 11 1 2335555543 3333333 355556666665432 22334789999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 314 LEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 314 l~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
|.+.+... +....+|..++..||+++|..+
T Consensus 348 l~~~fg~~-------------------~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 348 VKKLLGKK-------------------PNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHhCCC-------------------cCcCCCchhHHHhhhHHHHHHh
Confidence 88765311 1223356789999999999833
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.70 E-value=4.2e-16 Score=157.98 Aligned_cols=214 Identities=19% Similarity=0.213 Sum_probs=140.5
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCee-c
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (389)
-..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 357999999999999998877765 78999999999999999988763 4679999999999998774 4432 2
Q ss_pred ccceeeecccHhHHHHHHHHHHHhc-CCCCccCchHHH-------HHHHHHhcceeccChHHHHhhcccCcccceeEECC
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRR-GYSMNRTADFET-------VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP 244 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-~~~~~~~~~~~~-------~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 244 (389)
..+.....+||.++++.|.+.+.++ +.+. ..+... ++.+|+.++.. ......+..
T Consensus 208 la~~gd~~lGG~d~D~~l~~~l~~~~~~~~--~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~- 270 (599)
T TIGR01991 208 LATGGDSALGGDDFDHALAKWILKQLGISA--DLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL- 270 (599)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-
Confidence 2223346899999999999988654 2222 122222 23333332210 011111122
Q ss_pred CCc--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHh
Q 016461 245 DGR--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDR 321 (389)
Q Consensus 245 dg~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~ 321 (389)
+|. .+.++.+.|. ..+.+++ .+.+.|.++++.... ...-.+.|+|+||+|++|++.+++++.+...
T Consensus 271 ~g~~~~~~itr~efe~l~~~ll~---------~i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~~ 339 (599)
T TIGR01991 271 DGKDFKGKLTRDEFEALIQPLVQ---------KTLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQE 339 (599)
T ss_pred CCcEEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCCC
Confidence 232 3445555443 3344443 456666777665432 2233478999999999999999998765311
Q ss_pred hhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 322 YLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
+....+|..++-.||+++|..+
T Consensus 340 -------------------~~~~~npdeaVA~GAai~a~~l 361 (599)
T TIGR01991 340 -------------------PLTDIDPDQVVALGAAIQADLL 361 (599)
T ss_pred -------------------CCCCCCCcHHHHHHHHHHHHHh
Confidence 1223467889999999999744
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.69 E-value=9e-16 Score=157.07 Aligned_cols=219 Identities=17% Similarity=0.232 Sum_probs=143.1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCeec-
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYSF- 172 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~~- 172 (389)
-..++++.|.+++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|...
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357999999999999888887655 77899999999999999999875 4689999999999998774 55432
Q ss_pred ccceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
..+.....+||.++++.|.+.+..+ +.++.... -...++.+|+.++.-. .......+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~------------~~~i~i~~~ 320 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT------------QTEINLPFI 320 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC------------ceEEEEEee
Confidence 2234457899999999998877643 12221100 0123444554443110 000011111
Q ss_pred CCC--C-c--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHH
Q 016461 243 LPD--G-R--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEK 316 (389)
Q Consensus 243 lpd--g-~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~ 316 (389)
..| | . .+.++.+.|. ..+.+|. .+.+.|.+++.+.... ..-...|+|+||+|.+|++.++|++
T Consensus 321 ~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~l~~ 389 (663)
T PTZ00400 321 TADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAGVK--KDELNDVILVGGMTRMPKVSETVKK 389 (663)
T ss_pred ccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--HHHCcEEEEECCccCChHHHHHHHH
Confidence 111 1 1 3455555553 3344543 4666777777765332 2335789999999999999999887
Q ss_pred HHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 317 EILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 317 el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
.+..- +....+|+.++-.||+++|..+
T Consensus 390 ~f~~~-------------------~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 390 IFGKE-------------------PSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HhCCC-------------------cccCCCCccceeeccHHHHHhh
Confidence 75311 1123466789999999999744
No 29
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.69 E-value=5.8e-16 Score=158.37 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=140.5
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC------ceEEEEEcCCCceEEEEee--CCee-
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYS- 171 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~- 171 (389)
-..++++.|..++..+|+.+.+.. +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 357999999999999998877654 77899999999999999998864 3479999999999988663 3322
Q ss_pred cccceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeE
Q 016461 172 FPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (389)
Q Consensus 172 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (389)
+..+.....+||.++++.|.+++..+ +.++.... -...+++.|..++.-. .......+
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~------------~~~i~i~~ 279 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML------------TTSINLPF 279 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEee
Confidence 22223356899999999998876543 22221110 0123344444432100 00001111
Q ss_pred ECCC---C--cEEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHH
Q 016461 242 TLPD---G--RVIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLE 315 (389)
Q Consensus 242 ~lpd---g--~~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~ 315 (389)
...| + -.+.++.+.|. ..+.+|+ .+.+.|.+++.+... ...-.+.|+|+||+|++|.+.++|+
T Consensus 280 ~~~d~~~~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~v~~~l~ 348 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKFEELTKDLVE---------ATIEPMQQALKDAGL--KPEDIDRVILVGGSTRIPAVQEAIQ 348 (653)
T ss_pred eccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--CHHHCcEEEEECCCCCcchHHHHHH
Confidence 1111 1 13455555553 3344443 466667777765533 2334578999999999999999998
Q ss_pred HHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCC
Q 016461 316 KEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMK 363 (389)
Q Consensus 316 ~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~ 363 (389)
+.+... .+..+.+|..++-.||+++|..++
T Consensus 349 ~~f~~~------------------~~~~~~npdeaVA~GAAi~aa~l~ 378 (653)
T PRK13411 349 KFFGGK------------------QPDRSVNPDEAVALGAAIQAGVLG 378 (653)
T ss_pred HHcCCc------------------CcCCCCCchHHHHHHHHHHHHhhc
Confidence 765311 122234667889999999997443
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.69 E-value=8.9e-16 Score=154.78 Aligned_cols=207 Identities=18% Similarity=0.230 Sum_probs=141.8
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCee-c
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (389)
-..++++.|..++...|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999998888887766 477999999999999999999874 4569999999999998774 5532 2
Q ss_pred ccceeeecccHhHHHHHHHHHHHhcCCCCccC-chHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCCcEEEE
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRRGYSMNRT-ADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKV 251 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i 251 (389)
..+.....+||.++++.|.+.+..+- ..... ...+.+++.|+.+..-. .+. ...+.+
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------------------~~~---~~~~~i 277 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------------------SFN---NDNISI 277 (595)
T ss_pred EEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc------------------ccc---cceEEE
Confidence 22233468999999999999887542 21111 11234555565442110 011 115667
Q ss_pred Cccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCC
Q 016461 252 GTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGN 330 (389)
Q Consensus 252 ~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~ 330 (389)
+.+.|. ..+.+|+ .+.+.+.++++... ..=.+.|+|+||+|++|.+.++|.+.+..
T Consensus 278 tr~efe~l~~~l~~---------~~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~~---------- 334 (595)
T PRK01433 278 NKQTLEQLILPLVE---------RTINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFKV---------- 334 (595)
T ss_pred cHHHHHHHHHHHHH---------HHHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhCC----------
Confidence 766653 4444554 36666677766554 11247899999999999999988866521
Q ss_pred CCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 331 KDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 331 ~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
.+....+|..++-.||+++|..+
T Consensus 335 ---------~~~~~~npdeaVA~GAAi~a~~l 357 (595)
T PRK01433 335 ---------DILSDIDPDKAVVWGAALQAENL 357 (595)
T ss_pred ---------CceecCCchHHHHHHHHHHHHHh
Confidence 12223467889999999999844
No 31
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.69 E-value=2e-16 Score=161.85 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=142.1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-------ceEEEEEcCCCceEEEEee--CCee
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPVV--DGYS 171 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~~ 171 (389)
-..++++.|.+++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999998888777654 77999999999999999998863 4689999999999998764 4533
Q ss_pred c-ccceeeecccHhHHHHHHHHHHHhcC------CCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccce
Q 016461 172 F-PHLTKRMNVAGRHITSYLVDLLSRRG------YSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVK 239 (389)
Q Consensus 172 ~-~~~~~~~~~GG~~l~~~l~~~l~~~~------~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 239 (389)
. ..+.....+||.++++.|.+.+.+.- .++.... -...++++|+.++.. ...
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence 2 22223468999999999988775431 1111100 012344444443211 111
Q ss_pred eEEC---CCCc--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHH
Q 016461 240 NYTL---PDGR--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSR 313 (389)
Q Consensus 240 ~~~l---pdg~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~r 313 (389)
.+.+ .++. .+.|..+.|. .++.+|+ .+.+.|.+++.....+. .-.+.|+|+||+|++|.+.++
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHHH
Confidence 2222 1332 3455665553 3444554 36667777777665432 234789999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCC
Q 016461 314 LEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMK 363 (389)
Q Consensus 314 l~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~ 363 (389)
|.+.+... .+....+|+.++-.||+++|..+.
T Consensus 352 i~~~f~~~------------------~~~~~~npdeaVA~GAa~~aa~ls 383 (653)
T PTZ00009 352 IKDFFNGK------------------EPCKSINPDEAVAYGAAVQAAILT 383 (653)
T ss_pred HHHHhCCC------------------CCCCCCCcchHHhhhhhhhHHHhc
Confidence 88765321 112234667889999999987443
No 32
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.68 E-value=7.6e-16 Score=157.43 Aligned_cols=219 Identities=18% Similarity=0.244 Sum_probs=140.1
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEeeCC--ee-cc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDG--YS-FP 173 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG--~~-~~ 173 (389)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.-+ .. +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 57999999999999888876655 77899999999999999998864 568999999999999877432 22 22
Q ss_pred cceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEEC
Q 016461 174 HLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTL 243 (389)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 243 (389)
.+....++||.++++.|.+++..+ +.++.... -...++.+|+.++.-. .......+..
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~------------~~~i~i~~~~ 280 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ------------QTEINLPFIT 280 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC------------eEEEEEeecc
Confidence 223356899999999998876543 22221100 0123444454433110 0000011111
Q ss_pred CC--C-c--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHH
Q 016461 244 PD--G-R--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKE 317 (389)
Q Consensus 244 pd--g-~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~e 317 (389)
.| | . .+.|+.+.|. ..+.++. .+.+.|.++++..... ..-.+.|+|+||+|++|.+.++|++.
T Consensus 281 ~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~ 349 (627)
T PRK00290 281 ADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEF 349 (627)
T ss_pred cCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHH
Confidence 11 1 1 2445555553 3344443 4666677777665432 22347899999999999999999877
Q ss_pred HHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCC
Q 016461 318 ILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMK 363 (389)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~ 363 (389)
+..- +....+|..++..||+++|..+.
T Consensus 350 fg~~-------------------~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 350 FGKE-------------------PNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred hCCC-------------------CCcCcCChHHHHHhHHHHHHHhc
Confidence 5311 11234668899999999987443
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.67 E-value=1.8e-15 Score=154.99 Aligned_cols=238 Identities=20% Similarity=0.222 Sum_probs=147.4
Q ss_pred hhHHHHHHHHhh---hcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEE
Q 016461 81 EDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (389)
Q Consensus 81 ~~~e~~l~~~~~---~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tgl 152 (389)
+....+|+++.. ..++ ..-..++++.|.+++..+|+.+.+.. +..|++.+.++++|.||++++|. .+-+
T Consensus 151 ei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vl 227 (673)
T PLN03184 151 EISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETIL 227 (673)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEE
Confidence 334455555542 2333 22357999999999998888876654 77899999999999999998864 4679
Q ss_pred EEEcCCCceEEEEeeC--Cee-cccceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcce
Q 016461 153 VIDSGDGVTHVVPVVD--GYS-FPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCY 219 (389)
Q Consensus 153 VVDiG~~~t~v~pv~d--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~ 219 (389)
|+|+|+++++|+.+.- |.. +..+.....+||.++++.|.+++.++ +.++.... -...+++.|..+..
T Consensus 228 V~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~ 307 (673)
T PLN03184 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSS 307 (673)
T ss_pred EEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999987743 322 12223357899999999998877543 11111100 02234444444321
Q ss_pred eccChHHHHhhcccCcccceeEE--CCCC-cE--EEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHH
Q 016461 220 ISYDYKREYQLGLETTILVKNYT--LPDG-RV--IKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMM 293 (389)
Q Consensus 220 v~~~~~~~~~~~~~~~~~~~~~~--lpdg-~~--i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~ 293 (389)
.. .... ...+. ..+| .. +.|..+.|. ..+.+++ .+.+.|.+++.....+. .
T Consensus 308 ~~-----------~~~i-~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a~~~~--~ 364 (673)
T PLN03184 308 LT-----------QTSI-SLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDAKLSF--K 364 (673)
T ss_pred CC-----------cceE-EEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCh--h
Confidence 11 0000 11111 1112 22 345555553 3344443 35666777776654432 2
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCC
Q 016461 294 LYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMK 363 (389)
Q Consensus 294 l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~ 363 (389)
-.+.|+|+||+|++|.+.++|.+.+... + ....+|..++-.||+++|..+.
T Consensus 365 dId~ViLvGGssriP~V~~~i~~~fg~~---------~----------~~~~npdeaVA~GAAi~aa~ls 415 (673)
T PLN03184 365 DIDEVILVGGSTRIPAVQELVKKLTGKD---------P----------NVTVNPDEVVALGAAVQAGVLA 415 (673)
T ss_pred HccEEEEECCccccHHHHHHHHHHhCCC---------c----------ccccCcchHHHHHHHHHHHHhc
Confidence 2378999999999999999988776311 1 1123567889999999987443
No 34
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=153.85 Aligned_cols=219 Identities=16% Similarity=0.220 Sum_probs=141.7
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCeec-
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYSF- 172 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~~- 172 (389)
-..++++.|.++....|+.+.+.. +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|...
T Consensus 160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 357999999999988888876654 77899999999999999998874 4689999999999998875 66443
Q ss_pred ccceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
..+.....+||.++++.|.+.+.++ +.++.... -...+++.|..+.... .......+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~------------~~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAM------------ETEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCC------------ceEEEEeee
Confidence 2233457999999999998876542 22221100 0123444454433211 000011111
Q ss_pred CC--CC---cEEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHH
Q 016461 243 LP--DG---RVIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEK 316 (389)
Q Consensus 243 lp--dg---~~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~ 316 (389)
.. +| -.+.|+.+.|. ..+.|+. .+.+.+.+++.....+ ..-.+.|+|+||+|++|++.+.+.+
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~~--~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGVE--LKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--hhhCCEEEEECCcccChHHHHHHHH
Confidence 11 12 23456665553 3344444 3555666666654332 2334679999999999999999887
Q ss_pred HHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 317 EILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 317 el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
.+... | ....+|+.++-.||+++|..+
T Consensus 376 ~fg~~---------~----------~~~~nPdeaVA~GAAi~a~~l 402 (657)
T PTZ00186 376 FFQKD---------P----------FRGVNPDEAVALGAATLGGVL 402 (657)
T ss_pred HhCCC---------c----------cccCCCchHHHHhHHHHHHHh
Confidence 65321 1 123466789999999999744
No 35
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.66 E-value=1.6e-15 Score=154.54 Aligned_cols=218 Identities=17% Similarity=0.250 Sum_probs=139.1
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC------ceEEEEEcCCCceEEEEee--CCee-c
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (389)
..++++.|..++...|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++++.+. +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 57999999999999998887754 77899999999999999988763 4579999999999998774 3322 2
Q ss_pred ccceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEE
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (389)
..+.....+||.++++.|.+++..+ +.++.... -...++.+|+.++... .......+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~------------~~~i~i~~~ 277 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL------------STEINLPFI 277 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC------------ceEEEeeec
Confidence 2223346899999999998876532 22221100 0123444554433110 000000111
Q ss_pred CCC--C---cEEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHH
Q 016461 243 LPD--G---RVIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEK 316 (389)
Q Consensus 243 lpd--g---~~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~ 316 (389)
..| | ..+.++.+.|. ..+.+++ .+.+.|.+++.+.... ..-.+.|+|+||+|++|++.+.+++
T Consensus 278 ~~~~~g~~~~~~~itr~~fe~l~~~l~~---------~~~~~i~~~l~~a~~~--~~~i~~V~LvGGssriP~v~~~i~~ 346 (595)
T TIGR02350 278 TADASGPKHLEMTLTRAKFEELTADLVE---------RTKEPVRQALKDAGLS--ASDIDEVILVGGSTRIPAVQELVKD 346 (595)
T ss_pred ccCCCCCeeEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--HhHCcEEEEECCcccChHHHHHHHH
Confidence 111 1 13445555553 3344443 4666677777654322 2335789999999999999999887
Q ss_pred HHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 317 EILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 317 el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
.+.. .+....+|..++..||+++|..+
T Consensus 347 ~f~~-------------------~~~~~~~pdeava~GAa~~aa~l 373 (595)
T TIGR02350 347 FFGK-------------------EPNKSVNPDEVVAIGAAIQGGVL 373 (595)
T ss_pred HhCC-------------------cccCCcCcHHHHHHHHHHHHHHh
Confidence 6531 12233467889999999998743
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.66 E-value=4e-15 Score=152.01 Aligned_cols=218 Identities=21% Similarity=0.263 Sum_probs=137.3
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCee-cc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-FP 173 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~ 173 (389)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 47999999999999998776665 78899999999999999998874 4689999999999998774 4432 22
Q ss_pred cceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCcccceeEEC
Q 016461 174 HLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTL 243 (389)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 243 (389)
.+.....+||.++++.|.+.+..+ +.++.... -...++++|..+.... .......+..
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~------------~~~i~i~~~~ 282 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS------------VTDISLPFIT 282 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEeeee
Confidence 233456899999999998776543 22221100 0113344444432110 0000011111
Q ss_pred C--CC-c--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHH
Q 016461 244 P--DG-R--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKE 317 (389)
Q Consensus 244 p--dg-~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~e 317 (389)
. +| . .+.+..+.|. .++.++. .+.+.|.+++..... ...-...|+|+||+|++|.+.+.+.+.
T Consensus 283 ~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~ag~--~~~dId~VvLVGGssRiP~V~~~l~~~ 351 (668)
T PRK13410 283 ATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDAGL--SPEDIDEVVLVGGSTRMPMVQQLVRTL 351 (668)
T ss_pred cCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--ChhhCcEEEEECCccccHHHHHHHHHH
Confidence 1 11 1 2345555543 3344443 455666666665322 223346799999999999999988865
Q ss_pred HHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 318 ILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
+..- +....+|..++-.||+++|..+
T Consensus 352 fg~~-------------------~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 352 IPRE-------------------PNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred cCCC-------------------cccCCCCchHHHHhHHHHHHhh
Confidence 4211 1122356788999999999844
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.65 E-value=1.9e-15 Score=153.61 Aligned_cols=212 Identities=17% Similarity=0.138 Sum_probs=136.6
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee--CCee-c
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (389)
-..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 149 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 35799999999999988877665 588999999999999999988764 4579999999999998774 3432 2
Q ss_pred ccceeeecccHhHHHHHHHHHHHhcC-CCCccCchHHH-------HHHHHHhcceeccChHHHHhhcccCcccceeEECC
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSRRG-YSMNRTADFET-------VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP 244 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~-~~~~~~~~~~~-------~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 244 (389)
..+.....+||.++++.|.+.+.++. .+.. .+... ++..|+.++. .....+.++
T Consensus 228 lat~gd~~lGG~d~D~~l~~~~~~~~~~~~~--~~~~~~~~L~~~ae~aK~~LS~----------------~~~~~i~i~ 289 (616)
T PRK05183 228 LATGGDSALGGDDFDHLLADWILEQAGLSPR--LDPEDQRLLLDAARAAKEALSD----------------ADSVEVSVA 289 (616)
T ss_pred EEecCCCCcCHHHHHHHHHHHHHHHcCCCcC--CCHHHHHHHHHHHHHHHHhcCC----------------CceEEEEEe
Confidence 22334578999999999998886542 2211 12222 2333333211 111122222
Q ss_pred CCcEEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhh
Q 016461 245 DGRVIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYL 323 (389)
Q Consensus 245 dg~~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~ 323 (389)
+.. -.++.+.|. ..+.++. .+.+.+.+++.+.... ..-.+.|+|+||+|++|.+.++|.+.+...
T Consensus 290 ~~~-~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~l~~~fg~~-- 355 (616)
T PRK05183 290 LWQ-GEITREQFNALIAPLVK---------RTLLACRRALRDAGVE--ADEVKEVVMVGGSTRVPLVREAVGEFFGRT-- 355 (616)
T ss_pred cCC-CeEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--cccCCEEEEECCcccChHHHHHHHHHhccC--
Confidence 211 124444432 3333333 3555666666654321 223477999999999999999988765321
Q ss_pred hhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 324 EVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
+..+.+|..++-.||+++|..+
T Consensus 356 -----------------~~~~~npdeaVA~GAAi~a~~l 377 (616)
T PRK05183 356 -----------------PLTSIDPDKVVAIGAAIQADIL 377 (616)
T ss_pred -----------------cCcCCCchHHHHHHHHHHHHHh
Confidence 1123467889999999998744
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.52 E-value=3.4e-13 Score=131.58 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=66.7
Q ss_pred CeEEEecCCCCC-----HHHHHH--HHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEee-C
Q 016461 102 CKILLTDPPLNP-----AKNREK--MVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV-D 168 (389)
Q Consensus 102 ~~vll~~~~~~~-----~~~r~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~-d 168 (389)
..++++.|..+. ..+|+. .+.-..+..|++.+.++++|.+|++++|. .+.+|+|+|+++++++.|. +
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 579999998875 455543 24555688999999999999999999873 5689999999999998874 2
Q ss_pred C----------eecccceeeecccHhHHHHHHH
Q 016461 169 G----------YSFPHLTKRMNVAGRHITSYLV 191 (389)
Q Consensus 169 G----------~~~~~~~~~~~~GG~~l~~~l~ 191 (389)
+ .++-.+ . ..+||.++|+.|.
T Consensus 230 ~~~~~~~~r~~~vla~~-G-~~lGG~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHS-G-QRIGGNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecC-C-CCCChHHHHHHHH
Confidence 2 112211 1 3799999999986
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.50 E-value=9.2e-14 Score=142.43 Aligned_cols=217 Identities=21% Similarity=0.276 Sum_probs=134.8
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC------ceEEEEEcCCCceEEEEee--CCeecc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYSFP 173 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~~~ 173 (389)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|....
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999988887776 67899999999999999987753 4679999999999888773 554322
Q ss_pred -cceeeecccHhHHHHHHHHHHHhc-----CCCCccCc-----hHHHHHHHHHhcceeccChHHHHhhcccCccc-ceeE
Q 016461 174 -HLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTIL-VKNY 241 (389)
Q Consensus 174 -~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~-~~~~ 241 (389)
.+.....+||.++++.|.+.+.++ +.++.... -...++.+|+.+.... ..... ....
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~~~~~~~~ 283 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSND-----------NTEITISIES 283 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSS-----------SSEEEEEEEE
T ss_pred cccccccccccceecceeecccccccccccccccccccccccccccccccccccccccc-----------cccccccccc
Confidence 233457899999999999887643 22221110 0122334444332100 00000 0001
Q ss_pred ECCCCc--EEEECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHH
Q 016461 242 TLPDGR--VIKVGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEI 318 (389)
Q Consensus 242 ~lpdg~--~i~i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el 318 (389)
...+|. .+.|..+.|. ..+.+++ .+.++|.+++...... ..=.+.|+|+||+|.+|.+.++|.+.+
T Consensus 284 ~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f 352 (602)
T PF00012_consen 284 LYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELF 352 (602)
T ss_dssp EETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHT
T ss_pred ccccccccccccccceeccccccccc---------cccccccccccccccc--ccccceeEEecCcccchhhhhhhhhcc
Confidence 112243 3445555553 3344444 4667777777765432 233467999999999999988887665
Q ss_pred HHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 319 LDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
. . .+....+|..++-.||+++|.
T Consensus 353 ~-~------------------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 353 G-K------------------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp T-S------------------EEB-SS-TTTHHHHHHHHHHH
T ss_pred c-c------------------ccccccccccccccccccchh
Confidence 3 1 223344677899999999987
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.46 E-value=7.2e-12 Score=122.14 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHH
Q 016461 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (389)
Q Consensus 113 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (389)
+....+.+.+ +++..+..-..++.+|+++++++.. ...+|||||+++|+++.+.+|.++. ....++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHH
Confidence 3445555665 5688999999999999999998753 3479999999999999999999887 788999999999
Q ss_pred HHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECC--CC-cEEEECccccccccccCC
Q 016461 188 SYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP--DG-RVIKVGTERFQAPEALFT 264 (389)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp--dg-~~i~i~~~~~~~~E~lF~ 264 (389)
+.+...+. .+.+.++++|.++.....+... ....+.++ ++ ....++...+ .+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~----------~~~~i~v~~~~~~~~~~i~~~~l--~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIVG----------KDESVEVPSVGGRPPRSLQRQTL--AEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccCC----------CCceeEecCCCCCCCeEEcHHHH--HHHHHH
Confidence 99987663 3578899999876543221100 01112222 11 1112221111 111110
Q ss_pred CCCCCCCCCChHHHHHHHHHhCChhHHH-----HhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeE
Q 016461 265 PELIDVEGDGMADMVFRCIQEMDIDNRM-----MLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRL 339 (389)
Q Consensus 265 p~~~~~~~~~l~~~i~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v 339 (389)
.-..|.+.|.++++.++.+++. .+.+.|+||||+|++||+.+.+++.+..- .-.+.|.... .+
T Consensus 300 ------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~----vri~~P~~~~--g~ 367 (420)
T PRK09472 300 ------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQ----VRIGAPLNIT--GL 367 (420)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCC----eEEeCCcccC--CC
Confidence 0012444566666655555543 34556999999999999999988777521 1111221100 00
Q ss_pred EEeCCCCCcceeeehHHHHhc
Q 016461 340 RIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 340 ~v~~~~~~~~~~w~Gasi~a~ 360 (389)
. ....+|.|++-.|..+++.
T Consensus 368 ~-~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 368 T-DYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred h-hhcCCcHHHHHHHHHHHhh
Confidence 0 0013678999999999976
No 41
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.8e-12 Score=128.91 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=120.5
Q ss_pred CeEEEeCCCceEEEeecCCC-CCccccccceEecCcchhhhhhhccCCceEeccccccc-----c-CcceeeccccCCcc
Q 016461 5 NVVVCDNGTGYVKCGFAGEN-FPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL-----R-HQLDVSYPVNNGIV 77 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~-----~-~~~~~~~p~~~g~i 77 (389)
.+|.||+||.++.+.+.... .|. ++++..+.+..++...... ...+++|..|... . ....+++.+-.+..
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~--~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSK--NGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECC--CCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 58999999999999998766 455 3344444444443222111 1147888766431 1 11223333332110
Q ss_pred cC---------hhhHHHHHHHHhhhcCC------CCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHH
Q 016461 78 QN---------WEDMGQVWDHAFFSELK------IDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLT 142 (389)
Q Consensus 78 ~d---------~~~~e~~l~~~~~~~l~------~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a 142 (389)
.. .=..+++...++ .+|. +...-..++++.|.++....|..+.+.. ...|++.+.++++|.+|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L-~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtAA 160 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMIL-TKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTAA 160 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHH-HHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHH
Confidence 00 001333333333 2222 1234468999999999988877666554 67999999999999999
Q ss_pred HhhcCC-----ceEEEEEcCCCceEEEEee--CC-eecccceeeecccHhHHHHHHHHHHHh
Q 016461 143 LYAQGL-----LTGLVIDSGDGVTHVVPVV--DG-YSFPHLTKRMNVAGRHITSYLVDLLSR 196 (389)
Q Consensus 143 ~~~~g~-----~tglVVDiG~~~t~v~pv~--dG-~~~~~~~~~~~~GG~~l~~~l~~~l~~ 196 (389)
+|++|. .+-+|+|+|+++++++-|. +| ..+..+.....+||++++..|...+..
T Consensus 161 Alayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 161 ALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 999985 5789999999999999874 34 233344567899999999998877654
No 42
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.26 E-value=4.9e-11 Score=114.80 Aligned_cols=174 Identities=21% Similarity=0.228 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHH
Q 016461 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (389)
Q Consensus 113 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (389)
++...+.+.+. ++..+..-+.+..+|+++++++.. ...+|||+|+++|+++.+.+|.+.. ....++||++++
T Consensus 156 ~~~~v~~~~~~-~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKC-VERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHH-HHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 45555555554 477899999999999999988743 3579999999999999999998766 678999999999
Q ss_pred HHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECC---CCcEEEECccccc-cccccC
Q 016461 188 SYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP---DGRVIKVGTERFQ-APEALF 263 (389)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp---dg~~i~i~~~~~~-~~E~lF 263 (389)
+.+.+.+. ...+.++++|.+++....+... ....+.++ ++....++.+.+. +.+.++
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLEG----------PDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCCC----------CCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99877653 3478899999988765321100 01112221 1222334333221 222222
Q ss_pred CCCCCCCCCCChHHHHH-HHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHH
Q 016461 264 TPELIDVEGDGMADMVF-RCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEIL 319 (389)
Q Consensus 264 ~p~~~~~~~~~l~~~i~-~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~ 319 (389)
+ .+.+.|. +.+++...+ ..+-..|+||||+|++||+.+++.+.+.
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhC
Confidence 2 3555554 566554432 2232349999999999999999998875
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.23 E-value=9.5e-10 Score=105.14 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHH
Q 016461 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (389)
Q Consensus 113 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (389)
+....+.+.++ +|+.+..-..++-+|++++.+.-. -.+++||||+++|+|+.+.+|.+.. ....|+||+++|
T Consensus 163 ~~~~~~Nl~k~-v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~--~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKC-VERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY--TGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHH-HHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE--EeeEeeCccHHH
Confidence 34444555444 488888888889999999987743 5689999999999999999999988 788999999999
Q ss_pred HHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCC--CcE-EEECccccccccccCC
Q 016461 188 SYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPD--GRV-IKVGTERFQAPEALFT 264 (389)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--g~~-i~i~~~~~~~~E~lF~ 264 (389)
+.+...|. .+.+.++++|.++.....+.. .....++.|. +.. ..+.. ....++.-.
T Consensus 240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t~--~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVTR--SELSEIIEA 298 (418)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhhH--HHHHHHHHh
Confidence 99998885 468999999998765432211 1111122211 111 11111 001111000
Q ss_pred CCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCC
Q 016461 265 PELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDP 344 (389)
Q Consensus 265 p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~ 344 (389)
.-..+-+++...|++.-.. ..+...|+||||++++||+.+-.++-+..- .-.+.|.... .+ ....
T Consensus 299 ------R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~~----vRig~P~~~~--Gl-~d~~ 363 (418)
T COG0849 299 ------RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGRP----VRLGVPLNIV--GL-TDIA 363 (418)
T ss_pred ------hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCCc----eEeCCCcccc--Cc-hhhc
Confidence 0011333445555544322 566778999999999999998666555422 1122332111 11 0112
Q ss_pred CCCcceeeehHHHHhc
Q 016461 345 PRRKHMVYLGGAVLAG 360 (389)
Q Consensus 345 ~~~~~~~w~Gasi~a~ 360 (389)
.+|.|++-.|.-.++.
T Consensus 364 ~~p~fs~avGl~~~~~ 379 (418)
T COG0849 364 RNPAFSTAVGLLLYGA 379 (418)
T ss_pred cCchhhhhHHHHHHHh
Confidence 2478999999999888
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.13 E-value=3.6e-09 Score=100.33 Aligned_cols=188 Identities=17% Similarity=0.138 Sum_probs=110.0
Q ss_pred CeEEEeCCCceEEEeecCCCCCccccccceEecCc-chhhhh---h-------hccCCc---eEeccccccccCcceeec
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPML-RYEESL---M-------EQELKD---TIVGAAALDLRHQLDVSY 70 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-~~~~~~---~-------~~~~~~---~~vg~~~~~~~~~~~~~~ 70 (389)
.++-||+|-.++|+-+... ...+|+.++.... +..... . .-++.. +++|+++........-.+
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~~ 79 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDTY 79 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCcc
Confidence 5889999999999966421 2355766543321 100000 0 001123 778877532211000000
Q ss_pred cccCCcccChhhHHHHHHHHhhhcCCC--CCCCCeEEE--ecCCCC-CHHHHHHHHHHhhhh-----------cCCCeee
Q 016461 71 PVNNGIVQNWEDMGQVWDHAFFSELKI--DPPECKILL--TDPPLN-PAKNREKMVETMFEK-----------YNFAGVF 134 (389)
Q Consensus 71 p~~~g~i~d~~~~e~~l~~~~~~~l~~--~~~~~~vll--~~~~~~-~~~~r~~l~~~lfe~-----------~~~~~v~ 134 (389)
-.+. .. .-+.+..++..++...+.. ..+...++| -.|... ....++.+.+.+-.. ..+..|.
T Consensus 80 ~~~~-~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~ 157 (344)
T PRK13917 80 STND-RY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVK 157 (344)
T ss_pred cccc-cc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEE
Confidence 1111 11 2346777877776322221 112233443 334332 222235565544222 3466788
Q ss_pred eehhhHHHHhhcCC-------------ceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhc
Q 016461 135 IQIQAVLTLYAQGL-------------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (389)
Q Consensus 135 ~~~~~~~a~~~~g~-------------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (389)
++++++.|++.... ...+|||||+.+|.++.+.++.+....+...+.|..++.+.+.+.+.++
T Consensus 158 V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 158 VVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 99999999875532 2469999999999999999999998777789999999999999999544
No 45
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.10 E-value=2.3e-08 Score=95.49 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHhhhcCCCCCC------------------CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHH
Q 016461 80 WEDMGQVWDHAFFSELKIDPP------------------ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVL 141 (389)
Q Consensus 80 ~~~~e~~l~~~~~~~l~~~~~------------------~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~ 141 (389)
-+.++..+++-..+.+..+.. ...++++ ..++...+.+.++ |+..++.-..+..++++
T Consensus 93 ~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~---a~~~~~v~~~~~~-~~~aGl~~~~id~~~~A 168 (348)
T TIGR01175 93 ERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLA---ATRKEVVDSRLHA-LKLAGLEPKVVDVESFA 168 (348)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEE---EecHHHHHHHHHH-HHHcCCceEEEecHHHH
Confidence 356777777666666654321 1233333 2356777777776 47788777667777766
Q ss_pred HHhhc----------C-Cc-eEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHH
Q 016461 142 TLYAQ----------G-LL-TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFET 209 (389)
Q Consensus 142 a~~~~----------g-~~-tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~ 209 (389)
.+-+. . .. +.++||||+++|+++.+.+|.+.. .+..++||.++++.+.+.+. .+.+.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~ 237 (348)
T TIGR01175 169 LLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG---------LNPEE 237 (348)
T ss_pred HHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC---------CCHHH
Confidence 54332 1 12 489999999999999999999988 88999999999999876552 35677
Q ss_pred HHHHHHhcceeccChHHHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChh
Q 016461 210 VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDID 289 (389)
Q Consensus 210 ~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d 289 (389)
++++|....+.. +...+ ..+..++ .+..-|.++++-.-..
T Consensus 238 Ae~~k~~~~~~~-~~~~~------------------------------~~~~~~~---------~l~~eI~~~l~~~~~~ 277 (348)
T TIGR01175 238 AGEAKQQGGLPL-LYDPE------------------------------VLRRFKG---------ELVDEIRRSLQFFTAQ 277 (348)
T ss_pred HHHHHhcCCCCC-chhHH------------------------------HHHHHHH---------HHHHHHHHHHHhhcCC
Confidence 888887543211 00000 0000000 2444445555432211
Q ss_pred HHHHhhcCeEEecCCCCCCChHHHHHHHHH
Q 016461 290 NRMMLYQHIVLSGGSTMYPGLPSRLEKEIL 319 (389)
Q Consensus 290 ~r~~l~~nIvl~GG~s~i~G~~~rl~~el~ 319 (389)
......+.|+||||++.++||.+.|++++.
T Consensus 278 ~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 278 SGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred CCCcccceEEEECccccchhHHHHHHHHHC
Confidence 222235779999999999999999999886
No 46
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6e-09 Score=96.08 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=76.0
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC------ceEEEEEcCCCceEEE--EeeCCeec-
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVV--PVVDGYSF- 172 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~--pv~dG~~~- 172 (389)
...+++.|.++...+|+..-+. ---.+.+-+-++++|.+|+.++|. .+-+|.|+|+++.+|+ .|.+|..-
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 4577888888887877754332 223455677889999998888875 6789999999997776 45677433
Q ss_pred ccceeeecccHhHHHHHHHHHHHh-----cCCCCccCchHHHHHHHHHh
Q 016461 173 PHLTKRMNVAGRHITSYLVDLLSR-----RGYSMNRTADFETVRQIKEK 216 (389)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~ 216 (389)
..+.....+||.++++...+.+.+ .+.++. -+...+.+++++
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~--kdnkA~~KLrRe 298 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVR--KDNKAVQKLRRE 298 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccc--hhhHHHHHHHHH
Confidence 334456799999999877665433 233332 345566666654
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.05 E-value=6.5e-09 Score=97.90 Aligned_cols=185 Identities=13% Similarity=-0.009 Sum_probs=115.7
Q ss_pred EeCCCceEEEeecC-CCCC-ccccccceEecCcchhhhhh----------hccCCceEeccccccccCcceeeccccCCc
Q 016461 9 CDNGTGYVKCGFAG-ENFP-NSVFPCVVGRPMLRYEESLM----------EQELKDTIVGAAALDLRHQLDVSYPVNNGI 76 (389)
Q Consensus 9 iD~Gs~~ik~G~ag-~~~P-~~~~ps~~~~~~~~~~~~~~----------~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 76 (389)
||+|-.++|+-+.+ +..+ ...|||.++........... ..+...++||+.+...... ...+-+....
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 79999999987643 2232 34678876543221100000 0223467888776321110 1111122212
Q ss_pred ccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhh--------cCCCeeeeehhhHHHHhhc--
Q 016461 77 VQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEK--------YNFAGVFIQIQAVLTLYAQ-- 146 (389)
Q Consensus 77 i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 146 (389)
..-+....++.+++. ..+.+ ....+++-.|...-...++.+.+.+-.. ..+..+.+.|+++.|.+..
T Consensus 81 -~~~~~~~~L~~~Al~-~~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 -TETPEYMALLRGALA-LSKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred -cCCHHHHHHHHHHHH-HhcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 123456777777773 23332 1123555555544455677777766432 4678899999999887754
Q ss_pred -------CCceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhc
Q 016461 147 -------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (389)
Q Consensus 147 -------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (389)
...+.+|||||+.+|+++.+.++.+....+.+.+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 235579999999999999888888888777788999999999999999765
No 48
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.97 E-value=3.7e-10 Score=94.56 Aligned_cols=135 Identities=25% Similarity=0.338 Sum_probs=101.4
Q ss_pred hhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccC
Q 016461 125 FEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRT 204 (389)
Q Consensus 125 fe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~ 204 (389)
.|..+....+.+.+|.++++-.+.++|.|||+|.++|-|+-+-+|.++. +..-+.||.+++-.|+.. + .
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy--~ADEpTGGtHmtLvlAG~---y------g 184 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIY--SADEPTGGTHMTLVLAGN---Y------G 184 (277)
T ss_pred ecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEE--eccCCCCceeEEEEEecc---c------C
Confidence 4888999999999999999999999999999999999999999999999 667899998877554421 1 2
Q ss_pred chHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHH
Q 016461 205 ADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQ 284 (389)
Q Consensus 205 ~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~ 284 (389)
++.+.+++.|+..- +++ |.|..--... ..+++.+.+-|.
T Consensus 185 i~~EeAE~~Kr~~k--------------------------~~~------Eif~~v~PV~---------eKMAeIv~~hie 223 (277)
T COG4820 185 ISLEEAEQYKRGHK--------------------------KGE------EIFPVVKPVY---------EKMAEIVARHIE 223 (277)
T ss_pred cCHhHHHHhhhccc--------------------------cch------hcccchhHHH---------HHHHHHHHHHhc
Confidence 45677777776421 000 0010000111 147777888777
Q ss_pred hCChhHHHHhhcCeEEecCCCCCCChHHHHHHHH
Q 016461 285 EMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEI 318 (389)
Q Consensus 285 ~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el 318 (389)
..++. -+.|+||.+..||+.+-++++|
T Consensus 224 ~~~i~-------dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 224 GQGIT-------DLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred cCCCc-------ceEEecccccCccHHHHHHHHh
Confidence 76653 3889999999999999999998
No 49
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.8e-08 Score=99.44 Aligned_cols=226 Identities=19% Similarity=0.248 Sum_probs=135.4
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-------ceEEEEEcCCCceEEEEe--eCCe-e
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPV--VDGY-S 171 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv--~dG~-~ 171 (389)
..++++.|..+...+|+..-+.. .-.+++.+-++++|.+|+.++|. .+-+|.|.|++..+|.++ .+|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 57899999999888887666555 55788899999999999988873 566999999999888877 3453 3
Q ss_pred cccceeeecccHhHHHHHHHHHHHhc-----CCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCC
Q 016461 172 FPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDG 246 (389)
Q Consensus 172 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg 246 (389)
+....-..++||.++++.|...+... +.+.. .+...+..++..+-....+ +..........-.|-+|
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~--~n~r~l~rLR~a~E~aKr~------LS~~~~~~i~vdsL~~g 294 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIG--GNARALRRLRTACERAKRT------LSSSTQASIEIDSLYEG 294 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccc--cchHHHHHHHHHHHHHHhh------hcccccceeccchhhcc
Confidence 33444568999999998887765432 22221 1222333332221100000 00000110111112233
Q ss_pred cEEE--ECccccc-cccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhh
Q 016461 247 RVIK--VGTERFQ-APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYL 323 (389)
Q Consensus 247 ~~i~--i~~~~~~-~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~ 323 (389)
..+. +...||. .+.-||. ...+.+.++++..-.| +....-|||+||++.+|.+..-+++-+...
T Consensus 295 ~d~~~~itrarfe~l~~dlf~---------~~~~~v~~~L~da~~d--k~~i~~vvlVGGstriPk~~~ll~d~f~~k-- 361 (620)
T KOG0101|consen 295 IDFYTSITRARFEELNADLFR---------STLEPVEKALKDAKLD--KSDIDEVVLVGGSTRIPKVQKLLEDFFNGK-- 361 (620)
T ss_pred ccccceeehhhhhhhhhHHHH---------HHHHHHHHHHHhhccC--ccCCceeEEecCcccchHHHHHHHHHhccc--
Confidence 2222 3344543 4455665 3555666666653322 233456999999999998887766554311
Q ss_pred hhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCCCCC
Q 016461 324 EVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDA 365 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l~~~ 365 (389)
.+..+-+|+.++-.||++.|..+...
T Consensus 362 ----------------~~~~sinpDeavA~GAavqaa~~~g~ 387 (620)
T KOG0101|consen 362 ----------------ELNKSINPDEAVAYGAAVQAAILSGD 387 (620)
T ss_pred ----------------ccccCCCHHHHHHhhHHHHhhhccCC
Confidence 22234467889999999999855443
No 50
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.93 E-value=6.3e-08 Score=92.10 Aligned_cols=186 Identities=21% Similarity=0.300 Sum_probs=107.6
Q ss_pred ChhhHHHHHHHHhhhcCCCCCCC-----------------CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHH
Q 016461 79 NWEDMGQVWDHAFFSELKIDPPE-----------------CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVL 141 (389)
Q Consensus 79 d~~~~e~~l~~~~~~~l~~~~~~-----------------~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~ 141 (389)
+.+.++..+++=..+++..+.++ ..|+++- .+++..+..+++ |+..|..-..+--++.+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~-~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVEL-FEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHH-HHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHH-HHHcCCceEEEeehHHH
Confidence 44668888888877777654432 2344432 245556666555 46677765544433333
Q ss_pred --HHhhc---------CCceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHH
Q 016461 142 --TLYAQ---------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETV 210 (389)
Q Consensus 142 --a~~~~---------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 210 (389)
-+|.. ...+-++||||+..|+++-+.+|.++. .+..++||+++++.+.+.+. .+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHH
Confidence 23322 123569999999999999999999988 88899999999999987753 356677
Q ss_pred HHHHHhcceeccChHHHHhhcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhH
Q 016461 211 RQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDN 290 (389)
Q Consensus 211 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~ 290 (389)
+.+|..... ..+...+ +-+.+++ .|..-|.++++-.-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~---------~l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLE---------ELAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHhcC
Confidence 777765321 1111000 0011111 25555666665433333
Q ss_pred HHHhhcCeEEecCCCCCCChHHHHHHHHH
Q 016461 291 RMMLYQHIVLSGGSTMYPGLPSRLEKEIL 319 (389)
Q Consensus 291 r~~l~~nIvl~GG~s~i~G~~~rl~~el~ 319 (389)
...-.+.|+|+||+|.++||.+.|.++|.
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 34456779999999999999999999985
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.3e-08 Score=96.87 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=75.1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC----------ceEEEEEcCCCceEEEEee---
Q 016461 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL----------LTGLVIDSGDGVTHVVPVV--- 167 (389)
Q Consensus 101 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVDiG~~~t~v~pv~--- 167 (389)
-..++++.|+++.+..|+.+++.. .-.|..-++++++..++|..+|. +.-++.|+|++.|+++.|.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 357999999999999999998876 55788889999999999998874 4569999999999998874
Q ss_pred -----CCeecc-----cceeeecccHhHHHHHHHHHHHhc
Q 016461 168 -----DGYSFP-----HLTKRMNVAGRHITSYLVDLLSRR 197 (389)
Q Consensus 168 -----dG~~~~-----~~~~~~~~GG~~l~~~l~~~l~~~ 197 (389)
.|...+ .......+||..++..|..+|...
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 221111 112245789999999998887753
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.70 E-value=1.2e-06 Score=79.47 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=80.8
Q ss_pred EEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceeccChHHHHhh
Q 016461 151 GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL 230 (389)
Q Consensus 151 glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 230 (389)
.+|+|||+..|.+..+.+|+++. .+..++||++++..+.+... .+.+.++++|.... .+.|+..+.-.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~-~P~~y~~~vl~ 262 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGT-LPTDYGSEVLR 262 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCC-CCCchhHHHHH
Confidence 46999999999999999999999 88999999999999887653 23455666665422 22222222110
Q ss_pred cccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCCh
Q 016461 231 GLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGL 310 (389)
Q Consensus 231 ~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~ 310 (389)
+| ...|.+-|.++|+-.-..-...-+..|+|+||++.+.|+
T Consensus 263 ------------------------~f---------------~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL 303 (354)
T COG4972 263 ------------------------PF---------------LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGL 303 (354)
T ss_pred ------------------------HH---------------HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhH
Confidence 00 013556666666653211112233679999999999999
Q ss_pred HHHHHHHHH
Q 016461 311 PSRLEKEIL 319 (389)
Q Consensus 311 ~~rl~~el~ 319 (389)
.+.+.+.|.
T Consensus 304 ~~~i~qrl~ 312 (354)
T COG4972 304 AAAIQQRLS 312 (354)
T ss_pred HHHHHHHhC
Confidence 999999985
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.47 E-value=2.4e-05 Score=75.29 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=93.7
Q ss_pred eEEEeCCCceEEEeecCCCCCccccccceEecCcchhhhhhhccCCceEeccccccccCcceeeccccCCcccChhhHHH
Q 016461 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQ 85 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~e~ 85 (389)
.|.||+||.+++.=|+ +..+.+.-+-. ....+.+-+.-.-.++. -+..|+......|-++++.
T Consensus 8 SVGIDIGTsTTqlvfS-----rl~l~n~a~~~-----------~vpr~~I~dkev~yrS~-i~fTPl~~~~~ID~~~i~~ 70 (475)
T PRK10719 8 SVGIDIGTTTTQVIFS-----RLELENRASVF-----------QVPRIEIIDKEIIYRSP-IYFTPLLKQGEIDEAAIKE 70 (475)
T ss_pred EEEEeccCceEEEEEE-----EEEEecccccc-----------cCceEEEeeeEEEEecC-ceecCCCCCccccHHHHHH
Confidence 5999999999998776 22222211000 00011111110111111 2345887777779999999
Q ss_pred HHHHHhhhcCCCCCC--CCeEEEecCCCCCHHHHHHHHHHhh---hhcCCCeeeeehhhHHHHhhcC--------CceEE
Q 016461 86 VWDHAFFSELKIDPP--ECKILLTDPPLNPAKNREKMVETMF---EKYNFAGVFIQIQAVLTLYAQG--------LLTGL 152 (389)
Q Consensus 86 ~l~~~~~~~l~~~~~--~~~vll~~~~~~~~~~r~~l~~~lf---e~~~~~~v~~~~~~~~a~~~~g--------~~tgl 152 (389)
+.+.-| +.-++.++ +..+.++.-.....++.+++.+.+= ..|=|...-+--+.+++.+++| ....+
T Consensus 71 ~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa 149 (475)
T PRK10719 71 LIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVL 149 (475)
T ss_pred HHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceE
Confidence 999998 77788765 2344444444444444444444310 0010111111112222222222 25679
Q ss_pred EEEcCCCceEEEEeeCCeecccceeeecccHhHHHHH
Q 016461 153 VIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSY 189 (389)
Q Consensus 153 VVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~ 189 (389)
+||||+++|+++.+.+|.++. ....++||++++..
T Consensus 150 ~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~D 184 (475)
T PRK10719 150 NIDIGGGTANYALFDAGKVID--TACLNVGGRLIETD 184 (475)
T ss_pred EEEeCCCceEEEEEECCEEEE--EEEEecccceEEEC
Confidence 999999999999999999988 78899999977643
No 54
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.44 E-value=1.7e-06 Score=81.36 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred HHHHHhhhcCCCCCCCCeEEEecCC--CCC---HHHHHHHHH---Hhhh--------hcCCCeeeeehhhHHHHhhc---
Q 016461 86 VWDHAFFSELKIDPPECKILLTDPP--LNP---AKNREKMVE---TMFE--------KYNFAGVFIQIQAVLTLYAQ--- 146 (389)
Q Consensus 86 ~l~~~~~~~l~~~~~~~~vll~~~~--~~~---~~~r~~l~~---~lfe--------~~~~~~v~~~~~~~~a~~~~--- 146 (389)
+..|++ .+-++.+.+-.+++..|. +.. +..++.+.+ -+.. .+.+..+.+.|++++|.|..
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 445666 455667666666777772 111 122233322 1211 33467899999999998875
Q ss_pred --CCceEEEEEcCCCceEEEEeeCCeecc-cceeeecccHhHHHHHHHHHHHhc
Q 016461 147 --GLLTGLVIDSGDGVTHVVPVVDGYSFP-HLTKRMNVAGRHITSYLVDLLSRR 197 (389)
Q Consensus 147 --g~~tglVVDiG~~~t~v~pv~dG~~~~-~~~~~~~~GG~~l~~~l~~~l~~~ 197 (389)
...+.+|||||+.+++++.|.++.... .+....++|-..+.+.+.+.|...
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 236789999999999999998765443 334456889999999999988763
No 55
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.4e-05 Score=76.42 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC------------ceEEEEEcCCCceEEEEe
Q 016461 99 PPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------------LTGLVIDSGDGVTHVVPV 166 (389)
Q Consensus 99 ~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~v~pv 166 (389)
..-.+++|..|.+++..+|+.+++.. .-.|+.-+-+.++..+++.++|. .+-+-||+||+.++++..
T Consensus 135 ~~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~ 213 (727)
T KOG0103|consen 135 SPVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIA 213 (727)
T ss_pred CCCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeee
Confidence 34568999999999999999999887 56788889999999999988873 347899999999887755
Q ss_pred e--CCeecc-cceeeecccHhHHHHHHHHHHHhc
Q 016461 167 V--DGYSFP-HLTKRMNVAGRHITSYLVDLLSRR 197 (389)
Q Consensus 167 ~--dG~~~~-~~~~~~~~GG~~l~~~l~~~l~~~ 197 (389)
- -|..-. .+...-.+||+++++.|.+.+...
T Consensus 214 aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 214 AFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 3 343222 233455899999999999887654
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.10 E-value=0.00027 Score=64.13 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEEcCC
Q 016461 79 NWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGD 158 (389)
Q Consensus 79 d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~ 158 (389)
.|+.+.+.++.++ ++.+.++.+..-+.+...... .+ .|-... ..-+...+..+.+-... ...|||||+
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~~i~~Tg~~~~-----~v---~~~~~~--~~ei~~~~~g~~~~~~~-~~~vidiGg 100 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPIDKIVATGYGRH-----KV---GFADKI--VTEISCHGKGANYLAPE-ARGVIDIGG 100 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhheeEEEEECCCcc-----cc---cccCCc--eEEhhHHHHHHHHHCCC-CCEEEEecC
Confidence 4777777788887 666666554333322221111 01 111111 11222223333444443 446999999
Q ss_pred CceEEEEeeCCeecccc-eeeecccHhHHHHHHHHHHH
Q 016461 159 GVTHVVPVVDGYSFPHL-TKRMNVAGRHITSYLVDLLS 195 (389)
Q Consensus 159 ~~t~v~pv~dG~~~~~~-~~~~~~GG~~l~~~l~~~l~ 195 (389)
+.+.++-+.+|.+..-. ...+..|+-.+.+.+.+.|.
T Consensus 101 qd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 101 QDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred CeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC
Confidence 99999999999876422 23466777777777776653
No 57
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00025 Score=68.54 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=112.5
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEcCCCceEEE--EeeCCeeccc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVV--PVVDGYSFPH 174 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~--pv~dG~~~~~ 174 (389)
...+++.|.++...+|+..-+. ..-++-..+-.+++|-+|+.++|. ..-.|.|+|.++..|. -|.+|.....
T Consensus 161 ~~avvtvpAyfndsqRqaTkda-g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDA-GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhh-hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 4678888988887777754443 355666777788999999988875 3458999999987766 4577865443
Q ss_pred -ceeeecccHhHHHHHHHHHHHhc---CCCCccCchHHHHHHHHHhcceeccChHHHHhhcccCcccceeEECCCC---c
Q 016461 175 -LTKRMNVAGRHITSYLVDLLSRR---GYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDG---R 247 (389)
Q Consensus 175 -~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg---~ 247 (389)
+-.....||.+++..+..++-.. +..+....+...++.+++..--...+..+ ...+....+|.-.|. +
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs-----~~~tei~lp~iTada~gpk 314 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSS-----RQQTEINLPFITADASGPK 314 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhh-----cccceeccceeeccCCCCe
Confidence 33467889999999988776432 11122223445555555431100000000 000111122222232 3
Q ss_pred EEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHH-----HhhcCeEEecCCCCCCChHHHHHHH
Q 016461 248 VIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRM-----MLYQHIVLSGGSTMYPGLPSRLEKE 317 (389)
Q Consensus 248 ~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~G~~~rl~~e 317 (389)
.+.+.-.|-..-| -++.+|.+.|.-|-.++|. .=++.|+|+||.+.+|-..+.+.+-
T Consensus 315 h~~i~~tr~efe~-------------~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~ 376 (640)
T KOG0102|consen 315 HLNIELTRGEFEE-------------LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKEL 376 (640)
T ss_pred eEEEeecHHHHHH-------------hhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHH
Confidence 4444332221111 2445555555544333332 2234699999999999777766543
No 58
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.70 E-value=0.00023 Score=67.64 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=38.8
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 295 YQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 295 ~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
-+.|+++||.+..+|+.+.|++.|. .++..|+++++..-+||+++|+
T Consensus 356 ~~~VvftGGva~N~gvv~ale~~Lg-------------------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 REPVILVGGTSLIEGLVKALGDLLG-------------------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCcEEEECChhhhHHHHHHHHHHhC-------------------CcEEECCcccHHHHHHHHHHhc
Confidence 3459999999999999999988773 1344577889999999999986
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.66 E-value=0.00078 Score=60.74 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=39.9
Q ss_pred cCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHh
Q 016461 296 QHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLA 359 (389)
Q Consensus 296 ~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 359 (389)
.+|+++||.+.-+|+.+.|+++|... + ..+.+..++++++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---------~-----~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---------K-----MAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---------C-----cceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 0 23455567788999999999875
No 60
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.63 E-value=0.0011 Score=61.68 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=39.0
Q ss_pred eEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 298 IVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 298 Ivl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
||++||++...++.+.|++.+. .+|..|+.+++.--.||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~lg-------------------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG-------------------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC-------------------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999998887764 3677788899999999999998
No 61
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.47 E-value=0.0031 Score=57.78 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=39.0
Q ss_pred HhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 293 MLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 293 ~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
.+-..|+++||.+.-+|+.+.|++.|... +.+ .+++|++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~~-----------------v~~-~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGIK-----------------AVD-TKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCCC-----------------cee-CCCCccHHHHHHHHHHHH
Confidence 34457999999999999999999887421 221 255688999999999986
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.43 E-value=0.0037 Score=60.50 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=87.9
Q ss_pred eccccCCcccChhhHHHHHHHHhhhcCCCCCC---CCeEEEecCCCCCHHHHHHHHHHhhhhcC---CCeeeeehhhHHH
Q 016461 69 SYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFEKYN---FAGVFIQIQAVLT 142 (389)
Q Consensus 69 ~~p~~~g~i~d~~~~e~~l~~~~~~~l~~~~~---~~~vll~~~~~~~~~~r~~l~~~lfe~~~---~~~v~~~~~~~~a 142 (389)
..|+......|-++++++++.-| +.-++.++ .-.|++|-.. .-+++-+.+.+.|=+..| |...-=--+++.|
T Consensus 51 fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGET-ArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiA 128 (473)
T PF06277_consen 51 FTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGET-ARKENAREVLHALSGFAGDFVVATAGPDLESIIA 128 (473)
T ss_pred ccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecch-hhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHh
Confidence 45888777779999999999998 78888775 3466666543 334444555555544333 1111112467777
Q ss_pred HhhcCC--------ceEEEEEcCCCceEEEEeeCCeecccceeeecccHh-----------HHHHHHHHHHHhcCCCC
Q 016461 143 LYAQGL--------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR-----------HITSYLVDLLSRRGYSM 201 (389)
Q Consensus 143 ~~~~g~--------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~-----------~l~~~l~~~l~~~~~~~ 201 (389)
..++|- +.-+=+|||+++|.++.+.+|.++. ..-+++||+ .+...+..++...+..+
T Consensus 129 gkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~--T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 129 GKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVID--TACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred ccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEE--EEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 777762 4556689999999999999999988 567889987 34555666666666543
No 63
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.04 E-value=0.046 Score=49.15 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEcCCCceEEEEeeCCeecccceeeecccHhHHHH
Q 016461 114 AKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL-----TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITS 188 (389)
Q Consensus 114 ~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~ 188 (389)
+..-+.+++.+=++++++.---..++-+|..+.-.| --.|+|+|+++|+.+-|-..-.+. ...+.=+|+.++.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTm 171 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTM 171 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHH
Confidence 344467778888889999888888999999887543 247999999999998885443333 3445567888888
Q ss_pred HHHHHHHhcCCCCccCchHHHHHHHHHh
Q 016461 189 YLVDLLSRRGYSMNRTADFETVRQIKEK 216 (389)
Q Consensus 189 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~ 216 (389)
.+...|-- .++++++++|+-
T Consensus 172 lI~sELGl--------~d~~lAE~IKky 191 (332)
T PF08841_consen 172 LINSELGL--------EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHCT---------S-HHHHHHHHHS
T ss_pred HHHHhhCC--------CCHHHHHHhhhc
Confidence 88776642 368899999964
No 64
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.60 E-value=0.1 Score=48.71 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=57.0
Q ss_pred CeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeee---hhhHHHHhh----cCCceEEEEEcCCCceEEEEeeCCeeccc
Q 016461 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQ---IQAVLTLYA----QGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (389)
Q Consensus 102 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~---~~~~~a~~~----~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (389)
..++-| ..+-...+++.+++.+.+..+++- -++ .++.+...+ ....+++++|+|+++|.++-+.+|.+..
T Consensus 73 i~~vaT-sa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~- 149 (300)
T TIGR03706 73 VRAVAT-AALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE- 149 (300)
T ss_pred EEEEEc-HHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE-
Confidence 333333 334445667788888877666542 233 333332222 1234579999999999999999888776
Q ss_pred ceeeecccHhHHHHHHH
Q 016461 175 LTKRMNVAGRHITSYLV 191 (389)
Q Consensus 175 ~~~~~~~GG~~l~~~l~ 191 (389)
...+|+|.-.+++.+.
T Consensus 150 -~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 150 -GVSLPLGCVRLTEQFF 165 (300)
T ss_pred -EEEEccceEEhHHhhC
Confidence 7789999988877653
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.49 E-value=0.06 Score=53.94 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCC--eeeeehhhHHHHhhc-----CCceEEEEEcCCCceEEEEeeCCeecccceeeecc
Q 016461 109 PPLNPAKNREKMVETMFEKYNFA--GVFIQIQAVLTLYAQ-----GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNV 181 (389)
Q Consensus 109 ~~~~~~~~r~~l~~~lfe~~~~~--~v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~ 181 (389)
...-...+++.+++-+.+..|++ -+.=-.++-++..|. ...+++|||||+++|.++.+.+|.+.. ....++
T Consensus 85 sAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~l 162 (496)
T PRK11031 85 ATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--LFSLSM 162 (496)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--eeEEec
Confidence 33444566777887777777765 222233333333322 123589999999999999999998876 678999
Q ss_pred cHhHHHHH
Q 016461 182 AGRHITSY 189 (389)
Q Consensus 182 GG~~l~~~ 189 (389)
|.-.+++.
T Consensus 163 G~vrl~e~ 170 (496)
T PRK11031 163 GCVTWLER 170 (496)
T ss_pred cchHHHHH
Confidence 98776644
No 66
>PRK03011 butyrate kinase; Provisional
Probab=95.30 E-value=2.1 Score=41.00 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred CeEEEeCCCceEEEeecCCCCCccc
Q 016461 5 NVVVCDNGTGYVKCGFAGENFPNSV 29 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~~P~~~ 29 (389)
..++|.+||+++|+++..++.|.+.
T Consensus 3 ~il~inpgststk~a~~~~~~~~~~ 27 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEKPIFE 27 (358)
T ss_pred EEEEEcCCCchheEEEEcCCceeee
Confidence 6899999999999999988776543
No 67
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.22 E-value=0.13 Score=49.09 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=41.2
Q ss_pred hhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHh
Q 016461 294 LYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLA 359 (389)
Q Consensus 294 l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 359 (389)
+-..|+++||.++-+|+.+.|++.|... . ...+|..++++++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~--------~------~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKEN--------Y------GEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccc--------c------CCCeEecCCCccHHHHHHHHHhC
Confidence 3457999999999999999999988533 1 12356667788999999999875
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.93 E-value=0.08 Score=48.58 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEE-EecC----CCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhhcCCceEEEEE
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKIL-LTDP----PLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVID 155 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vl-l~~~----~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVD 155 (389)
+.+...++.++ +.++.+..+...+ +... ........+.+.. + .+.+..+...++++.-. ..-||+
T Consensus 42 ~~i~~~i~~~~-~~~~~~~~~i~~~~~g~aG~~~~~~~~~~~~~~~~---~-----~v~~~~Da~~al~~~~~-~~giv~ 111 (271)
T PF01869_consen 42 ENIKEAIEEAL-SQAGLSPDDIAAICIGAAGYGRAGDEQEFQEEIVR---S-----EVIVVNDAAIALYGATA-EDGIVV 111 (271)
T ss_dssp HHHHHHHHHHH-HHHTTSTTCCCEEEEEEEEEEETTTTTHHHHHHHH---H-----EEEEEEHHHHHHHHHST-SSEEEE
T ss_pred hHHHHHHHHHH-HHcCCCccccceeeeeEeeecCcccccchhhcceE---E-----EEEEEHHHHHHhCCCCC-CcEEEE
Confidence 34566677777 6777776554322 2211 1122222222221 2 88899999998887765 445556
Q ss_pred cCCCceEEEEee-CCeecc
Q 016461 156 SGDGVTHVVPVV-DGYSFP 173 (389)
Q Consensus 156 iG~~~t~v~pv~-dG~~~~ 173 (389)
|+...+.+.-+- +|....
T Consensus 112 I~GTGS~~~~~~~~g~~~r 130 (271)
T PF01869_consen 112 IAGTGSIAYGRDRDGRVIR 130 (271)
T ss_dssp EESSSEEEEEEETTSEEEE
T ss_pred EcCCCceEEEEEcCCcEEE
Confidence 666666666666 776654
No 69
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.062 Score=53.27 Aligned_cols=75 Identities=19% Similarity=0.077 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhcCCCee--eeehhhHHHHhhc----C-CceEEEEEcCCCceEEEEeeCCeecccceeeecccHhHH
Q 016461 114 AKNREKMVETMFEKYNFAGV--FIQIQAVLTLYAQ----G-LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHI 186 (389)
Q Consensus 114 ~~~r~~l~~~lfe~~~~~~v--~~~~~~~~a~~~~----g-~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l 186 (389)
..+...+.+.+-+.++++-= .=..++-++.+|. + ...++|+|||+++|.++-+-+..+.. ..++++|.-.+
T Consensus 87 A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~l 164 (492)
T COG0248 87 APNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRL 164 (492)
T ss_pred CCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeecceEEe
Confidence 34445555555566665532 2234444444433 3 57899999999999999998877766 67788886555
Q ss_pred HHHH
Q 016461 187 TSYL 190 (389)
Q Consensus 187 ~~~l 190 (389)
++.+
T Consensus 165 t~~~ 168 (492)
T COG0248 165 TERF 168 (492)
T ss_pred ehhh
Confidence 4443
No 70
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.53 E-value=0.43 Score=44.59 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=25.5
Q ss_pred cCCceEEEEEcCCCceEEEEeeCCeecc
Q 016461 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (389)
....+++.+|||+.+|+|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 4478999999999999999999999876
No 71
>PRK10854 exopolyphosphatase; Provisional
Probab=94.33 E-value=0.32 Score=49.02 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCe--eeeehhhHHHHhhcC-----CceEEEEEcCCCceEEEEeeCCeecccceeeecc
Q 016461 109 PPLNPAKNREKMVETMFEKYNFAG--VFIQIQAVLTLYAQG-----LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNV 181 (389)
Q Consensus 109 ~~~~~~~~r~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~ 181 (389)
...-...++..+++-+.+..|++- +.=-.++-+...|.- ..+++|||||+++|.++-+-+|.+.. ..+.++
T Consensus 90 sAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~l 167 (513)
T PRK10854 90 HTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRM 167 (513)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEEEec
Confidence 334445667778887777777652 222233333333221 14589999999999999999987665 556688
Q ss_pred cHhHHHHH
Q 016461 182 AGRHITSY 189 (389)
Q Consensus 182 GG~~l~~~ 189 (389)
|.-.+++.
T Consensus 168 G~vrl~e~ 175 (513)
T PRK10854 168 GCVSFAQL 175 (513)
T ss_pred ceeeHHhh
Confidence 87666553
No 72
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.31 E-value=7.1 Score=36.52 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHhhhhcCCCeeeeehhhHHHHhhc-------CCceEEEEEcCCCceEEEEeeCCeecc
Q 016461 120 MVETMFEKYNFAGVFIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 120 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (389)
+.+.+=+.+++| +++.+++-+++++- +..+.++|.+|.+. ....|.+|.++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 445555677887 78999998887732 45789999999876 677788998876
No 73
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.65 E-value=0.73 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCceEEEEeeCCee
Q 016461 148 LLTGLVIDSGDGVTHVVPVVDGYS 171 (389)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~ 171 (389)
..+++.||+|+.+|+|+||.+|..
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 357999999999999999999963
No 74
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.18 E-value=0.28 Score=45.36 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCeeee--ehhhHH----HHhhc-CCceEEEEEcCCCceEEEEeeCCeecccceeeecccH
Q 016461 111 LNPAKNREKMVETMFEKYNFAGVFI--QIQAVL----TLYAQ-GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAG 183 (389)
Q Consensus 111 ~~~~~~r~~l~~~lfe~~~~~~v~~--~~~~~~----a~~~~-g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG 183 (389)
+-...++..+++.+.+..|++--.+ ..++.+ +..+. ...+++|+|||+++|.++.+.+|.+.. ....|+|.
T Consensus 67 ~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~ 144 (285)
T PF02541_consen 67 LREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGA 144 (285)
T ss_dssp HHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--H
T ss_pred HHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHH
Confidence 3334566778888888887653222 122222 22233 568899999999999999999999988 78999999
Q ss_pred hHHHHHH
Q 016461 184 RHITSYL 190 (389)
Q Consensus 184 ~~l~~~l 190 (389)
-.+++.+
T Consensus 145 vrl~e~~ 151 (285)
T PF02541_consen 145 VRLTERF 151 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777665
No 75
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.83 E-value=0.79 Score=36.33 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=40.9
Q ss_pred EEEEcCCCceEEEEeeCCeecccceeeeccc--------HhHHH--HHHHHHHHhcCCCCccCchHHHHHHH-HHhcc
Q 016461 152 LVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA--------GRHIT--SYLVDLLSRRGYSMNRTADFETVRQI-KEKLC 218 (389)
Q Consensus 152 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~ 218 (389)
++||||++.|.++...++.... ...+++| +.+++ +.+.+-++. ..+.++++ |.++.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~ 68 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIG 68 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeee
Confidence 6899999999999999988777 7889999 99999 888877763 34566666 65544
No 76
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.17 E-value=0.92 Score=42.55 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=28.4
Q ss_pred cCCceEEEEEcCCCceEEEEeeCCeecccceeee
Q 016461 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRM 179 (389)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~ 179 (389)
+...+-++||+|++.|.+..|.+|+++..-.-+.
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~ 184 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTI 184 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEccccccc
Confidence 4556999999999999999999999998544444
No 77
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=91.13 E-value=1.9 Score=39.99 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=64.9
Q ss_pred eccccCCcccChhhHHHHHHHHhhhcCCCCCC---CCeEEEecCCCCCHHHHHHHHHHhhh---hcCCCeeeeehhhHHH
Q 016461 69 SYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFE---KYNFAGVFIQIQAVLT 142 (389)
Q Consensus 69 ~~p~~~g~i~d~~~~e~~l~~~~~~~l~~~~~---~~~vll~~~~~~~~~~r~~l~~~lfe---~~~~~~v~~~~~~~~a 142 (389)
..|+...--.|.++++.+...=| ..-++.++ ...|+++-...-.+.-|..+ ..|=. .|=+...-=.-+++-|
T Consensus 53 FTPv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl-~alSg~aGDFVVAtAGPdLESiIA 130 (473)
T COG4819 53 FTPVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVL-MALSGSAGDFVVATAGPDLESIIA 130 (473)
T ss_pred eeeecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHH-HHhhhcccceEEEecCCCHHHHhc
Confidence 44665544457788888877666 56677664 34677776654433333322 22211 1212211112234443
Q ss_pred HhhcC-------C-ceEEEEEcCCCceEEEEeeCCeecccceeeecccHhH
Q 016461 143 LYAQG-------L-LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRH 185 (389)
Q Consensus 143 ~~~~g-------~-~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 185 (389)
--+.| + +--+=+|||.++|..+-..-|.+.. ..-+++||+.
T Consensus 131 GkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~d--TaCLdiGGRL 179 (473)
T COG4819 131 GKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSD--TACLDIGGRL 179 (473)
T ss_pred cCCccccchhhhhceEEEEEeccCCccceeeeccccccc--ceeeecCcEE
Confidence 33333 2 2234579999999999999998887 4457888873
No 78
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=90.70 E-value=0.32 Score=45.16 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHh-hcCCceEEEEEcCCCceEEEEeeCCeecc
Q 016461 141 LTLY-AQGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 141 ~a~~-~~g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (389)
.+++ ..|..++++||||..+|+|++|.||.+..
T Consensus 68 ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 68 GAAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 3445 56889999999999999999999999965
No 79
>PRK09557 fructokinase; Reviewed
Probab=90.33 E-value=15 Score=34.06 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHHhhhhcCCCeeeeehhhHHHHhhc-------CCceEEEEEcCCCceEEEEeeCCeeccc
Q 016461 120 MVETMFEKYNFAGVFIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (389)
Q Consensus 120 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (389)
+.+.+=+.+++| +.+.+++-+++++- +..+.+.+.+|.+ .-..-|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEec
Confidence 344444567887 77889888887653 2366778899844 46667788887763
No 80
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=89.93 E-value=0.65 Score=41.85 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCceEEEEeeCCeecccceeee----cccHhHHHHHHHHHHHhcCCCCccCchHHHHHHHHHhcceec-cC
Q 016461 149 LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRM----NVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYIS-YD 223 (389)
Q Consensus 149 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~----~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~-~~ 223 (389)
-+-+.|.+|...|.++.|.+|+++..-.-+. .+||-.++..++-.|.+.-..++...- ++--..|+. .+
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fsK~~l------f~gGa~~i~gv~ 236 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFSKSLL------FEGGAAYIAGVD 236 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhccHhhe------ecccccccccCC
Confidence 3458899999999999999999998544433 667766777666665532211110000 000001111 01
Q ss_pred hHHHHh-hcccCcccceeEECCCCcEEEECccccccccccCCCCCCCCCCCChHHHHHHHHHhCChhHHHHhhcCeEEec
Q 016461 224 YKREYQ-LGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSG 302 (389)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~G 302 (389)
-.++.. ..++.. .. |. + .-|.+.+.+.+..+-++.++. -|+|+|
T Consensus 237 sp~ef~~~ake~e-------------------nl---e~-~---------~~l~e~vvK~v~tllps~~pd---~iylSG 281 (374)
T COG2441 237 SPEEFVKLAKEDE-------------------NL---ET-Y---------NALIEGVVKDVFTLLPSTYPD---AIYLSG 281 (374)
T ss_pred CHHHHHHHhhccc-------------------ch---HH-H---------HHHHHHHHHHHHHhccccCcc---eEEEee
Confidence 111100 000000 00 00 0 026666666666654444443 399999
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhcCC
Q 016461 303 GSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIM 362 (389)
Q Consensus 303 G~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~~l 362 (389)
-.+++|-|-.-+.+.|+..+-.. -. ...++....-.....+-.||+++|+.+
T Consensus 282 rf~~~~~~~~dv~~~l~d~~s~~-----g~---~~evr~le~~~K~KeaA~GaAiiAnai 333 (374)
T COG2441 282 RFSRIPRFFSDVKEKLRDAFSSY-----GF---GIEVRKLESRAKAKEAAEGAAIIANAI 333 (374)
T ss_pred ecccccchhhHHHHHHHHHHhhc-----Cc---cceeehhhhhhhhhhhccchhhhhhhh
Confidence 99999988777777776553210 00 022333322233456778999998844
No 81
>PRK13317 pantothenate kinase; Provisional
Probab=88.90 E-value=0.42 Score=43.96 Aligned_cols=52 Identities=21% Similarity=0.023 Sum_probs=41.0
Q ss_pred HhhcCeEEec-CCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 293 MLYQHIVLSG-GSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 293 ~l~~nIvl~G-G~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
.-.++|+++| |.+..|++.++|.+.++.. ..++..++++++..-+||++++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~----------------~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR----------------NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcC----------------CceEEecCCCchhHHHHHHHHhh
Confidence 3447899999 7999999999999776421 23556677889999999999876
No 82
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=87.45 E-value=27 Score=33.32 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred eEEEEEcCCCceEEEEeeCCeecccc
Q 016461 150 TGLVIDSGDGVTHVVPVVDGYSFPHL 175 (389)
Q Consensus 150 tglVVDiG~~~t~v~pv~dG~~~~~~ 175 (389)
+-+++.+|.+.. ++.|.||+++..+
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcC
Confidence 789999999875 8999999997744
No 83
>PRK13321 pantothenate kinase; Reviewed
Probab=85.53 E-value=17 Score=32.91 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.4
Q ss_pred eEEEeCCCceEEEeecCCC
Q 016461 6 VVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~ 24 (389)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999998654
No 84
>PRK13324 pantothenate kinase; Reviewed
Probab=82.87 E-value=28 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.2
Q ss_pred eEEEeCCCceEEEeecCCC
Q 016461 6 VVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~ 24 (389)
.+.||+|-+++|+|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 5789999999999988643
No 85
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=82.58 E-value=21 Score=32.20 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=16.4
Q ss_pred eEEEeCCCceEEEeecCCC
Q 016461 6 VVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~ 24 (389)
-+.||+|-++++.|+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 4789999999999998743
No 86
>PRK13318 pantothenate kinase; Reviewed
Probab=80.41 E-value=21 Score=32.33 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.8
Q ss_pred eEEEeCCCceEEEeecCC
Q 016461 6 VVVCDNGTGYVKCGFAGE 23 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~ 23 (389)
.+.||+|.+.+|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 578999999999999863
No 87
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=79.84 E-value=7.1 Score=34.11 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=15.1
Q ss_pred EEEeCCCceEEEeecCCC
Q 016461 7 VVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 7 iiiD~Gs~~ik~G~ag~~ 24 (389)
++||+|-+.+|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998665
No 88
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=74.74 E-value=37 Score=30.52 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.6
Q ss_pred EEEeCCCceEEEeecCCC
Q 016461 7 VVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 7 iiiD~Gs~~ik~G~ag~~ 24 (389)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 89
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=67.40 E-value=85 Score=27.86 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEE-ecCC-----CCCHHHHHHHHHHhhhhcCCCeeee---ehhhHHHHhhcCCceE
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILL-TDPP-----LNPAKNREKMVETMFEKYNFAGVFI---QIQAVLTLYAQGLLTG 151 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll-~~~~-----~~~~~~r~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~~tg 151 (389)
+.+-.+++.+| +.-++++.+..++. +--| +..-..-.+.+..+ .+.|-+-+ +-.--+.-+-.|-.+.
T Consensus 51 ~~il~Lv~~al-~ea~v~~~diD~icyTKGPGmgaPL~~vaivaRtlsll---w~kPlv~VNHCigHIEMGR~iTgA~nP 126 (336)
T KOG2708|consen 51 AWILGLVKQAL-EEAGVTSDDIDCICYTKGPGMGAPLSVVAIVARTLSLL---WNKPLVGVNHCIGHIEMGREITGAQNP 126 (336)
T ss_pred HHHHHHHHHHH-HHcCCChhhCCEEEEcCCCCCCCchhhHHHHHHHHHHH---hCCCcccchhhhhhhhhcceeccCCCC
Confidence 33556667777 56667777666664 3222 22223333333333 33443211 0011112223355788
Q ss_pred EEEEcCCCceEEEEeeCCeecccceeeecccHhHHHHHHHHHHHhcC
Q 016461 152 LVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRG 198 (389)
Q Consensus 152 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~ 198 (389)
+|+-+-.+.|+|+...+.+---. ..+++++--.....|++.|+-.+
T Consensus 127 vvLYvSGGNTQvIAYse~rYrIF-GETlDIAvGNClDRFAR~lklsN 172 (336)
T KOG2708|consen 127 VVLYVSGGNTQVIAYSEKRYRIF-GETLDIAVGNCLDRFARVLKLSN 172 (336)
T ss_pred EEEEEeCCceEEEEEccceeeee-cceehhhhhhhHHHHHHHhcCCC
Confidence 99999999999999988754331 34566653344445566665544
No 90
>PRK13326 pantothenate kinase; Reviewed
Probab=66.00 E-value=89 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.5
Q ss_pred CeEEEeCCCceEEEeecCCC
Q 016461 5 NVVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~ 24 (389)
..++||+|-+++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 35899999999999998765
No 91
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.39 E-value=9.4 Score=39.71 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=26.7
Q ss_pred HHhhcCCce--EEEEEcCCCceEEEEeeCCeecc
Q 016461 142 TLYAQGLLT--GLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 142 a~~~~g~~t--glVVDiG~~~t~v~pv~dG~~~~ 173 (389)
|+|-+|+.+ ++++|||..+|+++-+.+|.+..
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 445547777 99999999999999999987765
No 92
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.10 E-value=1.6e+02 Score=26.93 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHhhhhcCCCeeeeehhhHHHHhhc------CCceEEEEEcCCCceEEEEeeCCeecc
Q 016461 122 ETMFEKYNFAGVFIQIQAVLTLYAQ------GLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 122 ~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (389)
+.+=+.+++| +++.++.-+++++- +..+.+.|.+|++. -...|.||.++.
T Consensus 90 ~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~G~~~~ 145 (291)
T PRK05082 90 QTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLNGKLLT 145 (291)
T ss_pred HHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEECCEEee
Confidence 3333557887 78999888877542 34678999998654 566677888776
No 93
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=55.03 E-value=25 Score=31.16 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+|+| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 44555555555 567899999999999999999999999988874
No 94
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=53.37 E-value=26 Score=31.70 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+++++++-|.||=
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 45666666666 457899999999999999999999999888763
No 95
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=52.71 E-value=1.6e+02 Score=26.68 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=38.7
Q ss_pred eeehhhHHHHhhc-------CCceEEEEEcCCCceEEEEeeCCeecccceeeeccc---HhHHHHHHHHH
Q 016461 134 FIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA---GRHITSYLVDL 193 (389)
Q Consensus 134 ~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G---G~~l~~~l~~~ 193 (389)
.+.....+|.++. .....+|||+|-++|-.+.|.+|++.- +.....| ...+..++.++
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~G--vfEHHT~~l~~~kL~~~l~~l 212 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIYG--VFEHHTGMLTPEKLEEYLERL 212 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEEE--EEecccCCCCHHHHHHHHHHH
Confidence 5666666666654 246789999999999999999998865 4444433 33444444433
No 96
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=52.61 E-value=28 Score=31.56 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 44566666666 467899999999999999999999999888873
No 97
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=51.98 E-value=29 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+++++++-|.||
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFG 116 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 44566666666 56789999999999999999999999988876
No 98
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=51.88 E-value=29 Score=31.38 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+++++++-|.||
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~G 116 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 44566666666 55789999999999999999999999988876
No 99
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=51.16 E-value=31 Score=30.61 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILG 116 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 44555655666 45789999999999999999999999988776
No 100
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=50.73 E-value=8.4 Score=36.88 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.2
Q ss_pred cCeEEecCCCCCCChHHHHHHHHHH
Q 016461 296 QHIVLSGGSTMYPGLPSRLEKEILD 320 (389)
Q Consensus 296 ~nIvl~GG~s~i~G~~~rl~~el~~ 320 (389)
..|++|||++.=+-|.+||++.+..
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred ceEEEECCCcCCHHHHHHHHhhCCC
Confidence 5799999999999999999988753
No 101
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=50.71 E-value=30 Score=31.30 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44566666666 578899999999999999999999999888763
No 102
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=50.12 E-value=31 Score=31.20 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44566666666 567899999999999999999999999888763
No 103
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=50.10 E-value=30 Score=31.32 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44566666666 467899999999999999999999999888763
No 104
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=49.95 E-value=32 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 567899999999999999999999999888763
No 105
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=49.90 E-value=31 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lG 116 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILG 116 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 44555555655 56789999999999999999999999988776
No 106
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=49.45 E-value=55 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.6
Q ss_pred cccCCcccChhhHHHHHHHHhh
Q 016461 71 PVNNGIVQNWEDMGQVWDHAFF 92 (389)
Q Consensus 71 p~~~g~i~d~~~~e~~l~~~~~ 92 (389)
-+.+|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 4688999999998888888883
No 107
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=49.20 E-value=34 Score=30.87 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 44566666666 55789999999999999999999999988876
No 108
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=48.68 E-value=34 Score=30.99 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lG 118 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFG 118 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 44555555565 56789999999999999999999999988876
No 109
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=48.66 E-value=34 Score=30.47 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44556655565 457899999999999999999999999888773
No 110
>PRK09698 D-allose kinase; Provisional
Probab=47.56 E-value=38 Score=31.29 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHHHhhhhcCCCeeeeehhhHHHHhhc------CCceEEEEEcCCCceEEEEeeCCeecc
Q 016461 120 MVETMFEKYNFAGVFIQIQAVLTLYAQ------GLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 120 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (389)
+.+.+=+.+++| +++.++.-+++++- +..+.+.|.+|.+. -..-|.+|.++.
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGI-G~giv~~G~~~~ 153 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGM-GFAVWMNGAPWT 153 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCce-EEEEEECCEEee
Confidence 444444567887 77888887776531 34578889998664 555677888775
No 111
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=47.39 E-value=96 Score=32.30 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.2
Q ss_pred HHhhhhcCCCeeeeehhhHHHHhh
Q 016461 122 ETMFEKYNFAGVFIQIQAVLTLYA 145 (389)
Q Consensus 122 ~~lfe~~~~~~v~~~~~~~~a~~~ 145 (389)
+.+-+.++++.+.+.++.-|++++
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 444466899999999999999999
No 112
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=45.78 E-value=28 Score=26.05 Aligned_cols=50 Identities=16% Similarity=0.405 Sum_probs=35.0
Q ss_pred cCCcccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 73 ~~g~i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
..|.+.|+..++++++.+. +.| ++..|.-.+++. ...-|.+++.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4789999999999998766 333 344444444443 3467889999998763
No 113
>PRK00292 glk glucokinase; Provisional
Probab=45.38 E-value=2.6e+02 Score=26.01 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHhhhhcCCCeeeeehhhHHHHhhc-------------CC----ceEEEEEcCCCceEEEEeeCC
Q 016461 122 ETMFEKYNFAGVFIQIQAVLTLYAQ-------------GL----LTGLVIDSGDGVTHVVPVVDG 169 (389)
Q Consensus 122 ~~lfe~~~~~~v~~~~~~~~a~~~~-------------g~----~tglVVDiG~~~t~v~pv~dG 169 (389)
+.+=+.+++|.|.+.++.-+++++- ++ .+.++|-+|.+. -...|.+|
T Consensus 84 ~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi-G~giv~~g 147 (316)
T PRK00292 84 AAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL-GVAGLVPV 147 (316)
T ss_pred HHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc-eEEEEEec
Confidence 3344567888899999999999873 22 567888888665 34444565
No 114
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=44.67 E-value=40 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44566656665 557899999999999999999999999888773
No 115
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=44.40 E-value=30 Score=32.04 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHhhhhcCCCeeeeehhhHHHHhhc-------CCceEEEEEcCCCceEEEEeeCCeeccc
Q 016461 120 MVETMFEKYNFAGVFIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (389)
Q Consensus 120 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (389)
+.+.+=+.+++| |++.++.-+++++- +..+.+.|.+|.+. -...|.||.+...
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEEECCEEeeC
Confidence 444444667887 77999888877542 34678899998754 6777788887763
No 116
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=44.16 E-value=44 Score=29.63 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 44566666666 457899999999999999999999999888763
No 117
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.09 E-value=35 Score=31.40 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.4
Q ss_pred CeEEEeCCCceEEEeecCCC
Q 016461 5 NVVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~~ 24 (389)
+++.||+|.+.+++++...+
T Consensus 2 ~~lgvdig~~~i~~~l~dl~ 21 (291)
T PRK05082 2 TTLAIDIGGTKIAAALVGED 21 (291)
T ss_pred cEEEEEECCCEEEEEEEcCC
Confidence 48999999999999998654
No 118
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=41.66 E-value=51 Score=29.82 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 44566666665 557799999999999999999999999887764
No 119
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=41.65 E-value=2.2e+02 Score=28.42 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=51.8
Q ss_pred hhHHHHHHHHhhhcCCCC-CCCCeEEEecCCC---CCHHHHHHHHHHhhhhcCCC--------eeeee-------hhhHH
Q 016461 81 EDMGQVWDHAFFSELKID-PPECKILLTDPPL---NPAKNREKMVETMFEKYNFA--------GVFIQ-------IQAVL 141 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~-~~~~~vll~~~~~---~~~~~r~~l~~~lfe~~~~~--------~v~~~-------~~~~~ 141 (389)
+.+..+++.+- ++..-. ..+.||.|--..- .+....+.+++.+-..+... .+.++ ..-++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 45777888776 454332 4567888755543 35666777777765544421 22222 12334
Q ss_pred HHhhcC-----------CceEEEEEcCCCceEEEEeeC
Q 016461 142 TLYAQG-----------LLTGLVIDSGDGVTHVVPVVD 168 (389)
Q Consensus 142 a~~~~g-----------~~tglVVDiG~~~t~v~pv~d 168 (389)
+-|..| +.|.=.+|+|++.|+|+=+..
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 444443 456678999999999985544
No 120
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=39.11 E-value=59 Score=29.50 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+..... +.++.+.+++++-|.||=
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 44566666666 467899999988888 588999999999888774
No 121
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=38.97 E-value=3.1e+02 Score=25.44 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHhhhcCCCCCCC--CeEEEecCCCCCHHHHHHHHHHhhhhcC--CCeeeeehhhHHHHhhc--CCceEEE
Q 016461 80 WEDMGQVWDHAFFSELKIDPPE--CKILLTDPPLNPAKNREKMVETMFEKYN--FAGVFIQIQAVLTLYAQ--GLLTGLV 153 (389)
Q Consensus 80 ~~~~e~~l~~~~~~~l~~~~~~--~~vll~~~~~~~~~~r~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~tglV 153 (389)
.+.+++.++.++ .+-+++.+. +.+.|..+-......-+++.+.+-..|- +..+++..++..++++. |...|+|
T Consensus 46 ~~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiV 124 (336)
T KOG1794|consen 46 ASRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIV 124 (336)
T ss_pred HHHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEE
Confidence 356888888888 677777664 6777877777766777777776655442 34577888888888776 5589999
Q ss_pred EEcCCCceEEEEeeCCeecc
Q 016461 154 IDSGDGVTHVVPVVDGYSFP 173 (389)
Q Consensus 154 VDiG~~~t~v~pv~dG~~~~ 173 (389)
+=-|.+..+-.-.-||..-.
T Consensus 125 LiaGTgs~crl~~~DGs~~~ 144 (336)
T KOG1794|consen 125 LIAGTGSNCRLVNPDGSEKG 144 (336)
T ss_pred EEecCCceeEEECCCCCccC
Confidence 99999998887778875543
No 122
>PRK13320 pantothenate kinase; Reviewed
Probab=38.17 E-value=3e+02 Score=24.71 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.7
Q ss_pred eEEEeCCCceEEEeecCCC
Q 016461 6 VVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~ 24 (389)
.+.||+|-+++|+|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 7899999999999988643
No 123
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=37.80 E-value=62 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+..... +.++.+.+++++-|.||=
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 44566666666 457899999988887 678899999999888874
No 124
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=36.99 E-value=72 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=33.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
|.++.|=+++| ..+++||||+.....+.+..+++++++-+.||
T Consensus 74 dvl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 74 DCIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 33455544544 56789999999999999999999999999888
No 125
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=35.57 E-value=63 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCC-CHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+++| ..+++||||+..... +.+..+.+++++-|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 44556656666 457799999988888 588899999999887763
No 126
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.24 E-value=2.5e+02 Score=25.61 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCceEEEEeeCCeecc---cceeeecccHhHHHHHHHHHHH
Q 016461 149 LTGLVIDSGDGVTHVVPVVDGYSFP---HLTKRMNVAGRHITSYLVDLLS 195 (389)
Q Consensus 149 ~tglVVDiG~~~t~v~pv~dG~~~~---~~~~~~~~GG~~l~~~l~~~l~ 195 (389)
.-++|||+|.++|..+-|.++++.- ++. ..+.-..+..++.++..
T Consensus 227 ~palvVd~GngHttaalvdedRI~gv~EHHT--~~Lspekled~I~rf~~ 274 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIVGVYEHHT--IRLSPEKLEDQIIRFVE 274 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEEEEeeccc--ccCCHHHHHHHHHHHHh
Confidence 3579999999999999998886643 111 12223555555555543
No 127
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=33.63 E-value=48 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.2
Q ss_pred CeEEEeCCCceEEEeecCC
Q 016461 5 NVVVCDNGTGYVKCGFAGE 23 (389)
Q Consensus 5 ~~iiiD~Gs~~ik~G~ag~ 23 (389)
..+.||+|...+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3789999999999998753
No 128
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=32.97 E-value=32 Score=32.95 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.7
Q ss_pred CeEEecCCCCCCChHHHHHHHHH
Q 016461 297 HIVLSGGSTMYPGLPSRLEKEIL 319 (389)
Q Consensus 297 nIvl~GG~s~i~G~~~rl~~el~ 319 (389)
.|++|||++.-|-|.+||++.+.
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhcC
Confidence 59999999999999999998873
No 129
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=31.62 E-value=1.2e+02 Score=29.13 Aligned_cols=22 Identities=14% Similarity=0.207 Sum_probs=18.7
Q ss_pred cccCCcccChhhHHHHHHHHhh
Q 016461 71 PVNNGIVQNWEDMGQVWDHAFF 92 (389)
Q Consensus 71 p~~~g~i~d~~~~e~~l~~~~~ 92 (389)
-+.+|.|.|.+.+.+.++.++.
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIE 58 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHH
Confidence 4689999999998888888884
No 130
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=29.66 E-value=44 Score=30.78 Aligned_cols=68 Identities=10% Similarity=-0.072 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHhCCh-hHHHHhhcCeEEecC-CCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCccee
Q 016461 274 GMADMVFRCIQEMDI-DNRMMLYQHIVLSGG-STMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMV 351 (389)
Q Consensus 274 ~l~~~i~~~i~~~~~-d~r~~l~~nIvl~GG-~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 351 (389)
+|-.+|.+.|-.+.. --++.-.++|+++|| .+..|.+.+++...+.-. ..+...+....+..
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~----------------~~~~ifp~h~~y~g 272 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFW----------------SKKALFLEHEGYSG 272 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhc----------------CceEEEECCcchHH
Confidence 455555555544321 224455788999999 778898888888776522 24555555556777
Q ss_pred eehHHH
Q 016461 352 YLGGAV 357 (389)
Q Consensus 352 w~Gasi 357 (389)
-+||.+
T Consensus 273 AlGAaL 278 (279)
T TIGR00555 273 AIGALL 278 (279)
T ss_pred Hhhhcc
Confidence 777654
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=29.42 E-value=91 Score=32.08 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
|.++.|=+|+| ..+++||||+.....+.+..+.+++++-|.||=
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 44556656665 567799999999999999999999999888874
No 132
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=29.05 E-value=1.5e+02 Score=21.76 Aligned_cols=45 Identities=20% Similarity=0.065 Sum_probs=25.9
Q ss_pred EEEEEcCCCceEEEEe-eCCeecccceeeecccHhHHHHHHHHHHH
Q 016461 151 GLVIDSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLS 195 (389)
Q Consensus 151 glVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~ 195 (389)
-+.||+|...+.++.+ .+|..+........-+...+-+.+.+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~ 48 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIK 48 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHH
Confidence 4789999988888877 46766653222222133344444444443
No 133
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.64 E-value=92 Score=32.00 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
+.++.|-+|+| ..+++||||+.....+.+..+++++++-+.||=
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 34555555555 567899999999999999999999999888874
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=28.29 E-value=88 Score=32.04 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
+.++.|=+|+| ..+++||||+.....+.+....+++++-|.||=
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 33555555555 567899999999999999999999999888874
No 135
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=27.66 E-value=36 Score=33.58 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=43.2
Q ss_pred CeEEEecCC------CCCHHHHHHHHHHhhhhc-CCC---------eeeeehhhHHHH-----hhcC------CceEEEE
Q 016461 102 CKILLTDPP------LNPAKNREKMVETMFEKY-NFA---------GVFIQIQAVLTL-----YAQG------LLTGLVI 154 (389)
Q Consensus 102 ~~vll~~~~------~~~~~~r~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~g------~~tglVV 154 (389)
..+.++++- .+...-|+.+.+++.+.. +.| .--+.+.|-+.. ++-+ ...-++|
T Consensus 175 ~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~V 254 (463)
T TIGR01319 175 IFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILI 254 (463)
T ss_pred ceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEE
Confidence 344555553 345677888888865543 122 122333333322 2222 2457999
Q ss_pred EcCCCceEEEEeeCCeec
Q 016461 155 DSGDGVTHVVPVVDGYSF 172 (389)
Q Consensus 155 DiG~~~t~v~pv~dG~~~ 172 (389)
|||+.+|+|-.+.+|.+.
T Consensus 255 DIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 255 DIGGATTDVHSAAAGELS 272 (463)
T ss_pred EcCccccchhhccCCCcc
Confidence 999999999999999665
No 136
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=27.27 E-value=58 Score=28.19 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=14.3
Q ss_pred eEEecCCC-----------------CCCChHHHHHHH
Q 016461 298 IVLSGGST-----------------MYPGLPSRLEKE 317 (389)
Q Consensus 298 Ivl~GG~s-----------------~i~G~~~rl~~e 317 (389)
||.+||++ .+|||.+.+...
T Consensus 70 IITTGGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~ 106 (193)
T PRK09417 70 VLTTGGTGPARRDVTPEATLAVADKEMPGFGEQMRQI 106 (193)
T ss_pred EEECCCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHH
Confidence 88888877 467777766544
No 137
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=26.15 E-value=55 Score=32.93 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCCCeEEEeCCCceEEEeecCCC
Q 016461 1 MDNRNVVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 1 m~~~~~iiiD~Gs~~ik~G~ag~~ 24 (389)
|+-+-.++||+||..+|+.+...+
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCC
Confidence 555678999999999999998776
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=26.07 E-value=1.1e+02 Score=31.24 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
+.++.|=+|+| ..+++||||+.....+....+++++++-|.||=
T Consensus 179 ~v~~~I~~~AF------~~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAF------QVSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 467899999999999999999999999887773
No 139
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=25.97 E-value=1.2e+02 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.8
Q ss_pred EEEEEcCCCceEEEEeeCCeecccceeeecccHh---HHHHHHHHHHHhcCC
Q 016461 151 GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR---HITSYLVDLLSRRGY 199 (389)
Q Consensus 151 glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~---~l~~~l~~~l~~~~~ 199 (389)
-+=||+|+.++-++.+.++.++. ....+.|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~~--~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELYG--YNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEEE--EEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 35589999999999998876544 344566654 556666777766553
No 140
>PLN02223 phosphoinositide phospholipase C
Probab=25.52 E-value=1.2e+02 Score=30.76 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~ 130 (389)
+.++.|=+|+| ..++++||||+.....+.+..+++++++-|.||=
T Consensus 179 ~vl~aI~~~AF-----~~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAF-----TKCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhh-----hcCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 44666666666 2334899999999999999999999999887763
No 141
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=24.52 E-value=1.6e+02 Score=29.41 Aligned_cols=84 Identities=10% Similarity=0.176 Sum_probs=51.9
Q ss_pred CCcccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeee-----------------
Q 016461 74 NGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQ----------------- 136 (389)
Q Consensus 74 ~g~i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~----------------- 136 (389)
.|.| +|.+|.+-.++-. . ..++.|+..+-|...+.-.-+.+...+.......++|+-
T Consensus 303 sGvi--ydl~Ecls~~idn-a---~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlki 376 (653)
T KOG1138|consen 303 SGVI--YDLIECLSQDIDN-A---GLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKI 376 (653)
T ss_pred Cchh--hHHHHHhhhcccc-c---CCcCCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceee
Confidence 4555 3455655443321 1 224788888888777655555444444444455555553
Q ss_pred hhhHHHHhhcCCceEEEEEcCCCceEE
Q 016461 137 IQAVLTLYAQGLLTGLVIDSGDGVTHV 163 (389)
Q Consensus 137 ~~~~~a~~~~g~~tglVVDiG~~~t~v 163 (389)
..++...|+..-.+.|||++||..-++
T Consensus 377 y~sl~g~fSndfrqpcvvf~~H~SlRf 403 (653)
T KOG1138|consen 377 YLSLLGLFSNDFRQPCVVFMGHPSLRF 403 (653)
T ss_pred hHHHHHHHhhhcccceeEecCCcchhh
Confidence 345667778888999999999986554
No 142
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=24.41 E-value=43 Score=31.89 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCC-CeEEEecCCCCCHHHHH--HHHHHhhhhcCCCeeeee--hhhHHHHhh-cCCceEEEE
Q 016461 81 EDMGQVWDHAFFSELKIDPPE-CKILLTDPPLNPAKNRE--KMVETMFEKYNFAGVFIQ--IQAVLTLYA-QGLLTGLVI 154 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~-~~vll~~~~~~~~~~r~--~l~~~lfe~~~~~~v~~~--~~~~~a~~~-~g~~tglVV 154 (389)
+.+-.+++.++ +..++...+ ..|.++.-|-.....|- ..++-|--.+++|-+-+. ...+++.+- .+..-.+++
T Consensus 51 ~~l~~~i~~~l-~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l~~~~~~Pl~L 129 (345)
T PTZ00340 51 EHILSLVKEAL-EEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENPVVL 129 (345)
T ss_pred HHHHHHHHHHH-HHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhhccCCCCCeEE
Confidence 34566667777 555666555 35556666654334443 446666677888876553 233333333 232222555
Q ss_pred EcCCCceEEEEeeCC-eecccceeeecc-cHhHHHHHHHH
Q 016461 155 DSGDGVTHVVPVVDG-YSFPHLTKRMNV-AGRHITSYLVD 192 (389)
Q Consensus 155 DiG~~~t~v~pv~dG-~~~~~~~~~~~~-GG~~l~~~l~~ 192 (389)
-+-+++|.++-...+ +-+- ..+.+. .|+.+|+.=+.
T Consensus 130 lVSGGhT~l~~~~~~~~~il--G~T~Dda~Gea~DKvar~ 167 (345)
T PTZ00340 130 YVSGGNTQVIAYSEHRYRIF--GETIDIAVGNCLDRFARL 167 (345)
T ss_pred EEeCCceEEEEecCCeEEEE--EeecccchhHHHHHHHHH
Confidence 555566666653222 2111 233433 46666665443
No 143
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=24.22 E-value=2e+02 Score=27.06 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHhhh-cCCCCC------------CCCeEEEecCCCCCHHHHHHHHHHhhhhcCCCeeeeehhhHHHHhh
Q 016461 79 NWEDMGQVWDHAFFS-ELKIDP------------PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYA 145 (389)
Q Consensus 79 d~~~~e~~l~~~~~~-~l~~~~------------~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~ 145 (389)
|++.++++++..+.+ ...... .+..+-+|.-++. -..+.+ -..++++.+.++++-.+.+|+
T Consensus 34 ~~~s~~~~l~~~l~~~~~~~~~p~~~~iavAGPV~~~~~~lTN~~W~--i~~~~l----~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 34 DFPSFEDALADYLAELDAGGPEPDSACIAVAGPVRDGKVRLTNLPWT--IDADEL----AQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp CCCHHHHHHHHHHHHTCHHHTCEEEEEEEESS-EETTCEE-SSSCCE--EEHHHC----HCCCT-TCEEEEEHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhcccCCCccceEEEEEecCccCCEEEecCCCcc--ccHHHH----HHHhCCceEEEEcccchheec
Confidence 566677777777642 111111 1334445444432 222222 256899999999999999996
Q ss_pred cC-----------------CceEEEEEcCCC--ceEEEEeeCC
Q 016461 146 QG-----------------LLTGLVIDSGDG--VTHVVPVVDG 169 (389)
Q Consensus 146 ~g-----------------~~tglVVDiG~~--~t~v~pv~dG 169 (389)
.- ....+||-.|.+ ...++|.-++
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~ 150 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDG 150 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTE
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCc
Confidence 61 244577777765 3444454444
No 144
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=24.22 E-value=37 Score=20.99 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=8.3
Q ss_pred ccccHHHHhh
Q 016461 368 FWISRDDYLE 377 (389)
Q Consensus 368 ~~itr~ey~e 377 (389)
-|||++||+|
T Consensus 25 g~IT~eey~e 34 (40)
T PF09693_consen 25 GWITKEEYKE 34 (40)
T ss_pred CeECHHHHHH
Confidence 4899999986
No 145
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=23.88 E-value=57 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.9
Q ss_pred eEEEeCCCceEEEeecCCC
Q 016461 6 VVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag~~ 24 (389)
.+.||+||.++|+.+..++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4899999999999877543
No 146
>PRK13333 pantothenate kinase; Reviewed
Probab=23.51 E-value=1.1e+02 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=19.5
Q ss_pred hhHHHHhhcCCceEEEEEcCCCceEEEEeeCC
Q 016461 138 QAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDG 169 (389)
Q Consensus 138 ~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG 169 (389)
+-++++++. ..++|||+|...|-= .|.+|
T Consensus 75 DR~~a~~aa--~~~lVIDaGTAiTiD-vv~~g 103 (206)
T PRK13333 75 DRIAACYAI--EDGVVVDAGSAITVD-IMSNG 103 (206)
T ss_pred HHHHHhccC--CCeEEEEcCCceEEE-EEcCC
Confidence 335666665 479999999987643 33554
No 147
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.96 E-value=56 Score=30.88 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCe-EEEecCCCCCHHHHH--HHHHHhhhhcCCCeeeee--hhhHHHHhh-cC-CceEEE
Q 016461 81 EDMGQVWDHAFFSELKIDPPECK-ILLTDPPLNPAKNRE--KMVETMFEKYNFAGVFIQ--IQAVLTLYA-QG-LLTGLV 153 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~-vll~~~~~~~~~~r~--~l~~~lfe~~~~~~v~~~--~~~~~a~~~-~g-~~tglV 153 (389)
+.+-.+++.++ +.-+++.++.. |-+|.-|-.....+- ..++.|=-.++.|-+-+- ...+.+.+- .+ ....+.
T Consensus 52 e~i~~li~~al-~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~~~p~v~ 130 (342)
T COG0533 52 ENIPPLIEEAL-AEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVA 130 (342)
T ss_pred HHHHHHHHHHH-HHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccCCCCCcEE
Confidence 34666777777 66677665543 445655555433332 333444344777765432 233333332 34 444555
Q ss_pred EEcCCCceEEEEeeC-Ceecccceeeecc-cHhHHHHH
Q 016461 154 IDSGDGVTHVVPVVD-GYSFPHLTKRMNV-AGRHITSY 189 (389)
Q Consensus 154 VDiG~~~t~v~pv~d-G~~~~~~~~~~~~-GG~~l~~~ 189 (389)
+=+-+++|+++-+.+ |...- -..+++. -|+.+|+.
T Consensus 131 LlVSGGHTqli~~~~~g~y~i-lGeTlDdA~Gea~DKv 167 (342)
T COG0533 131 LLVSGGHTQLIAVRGIGRYEV-LGETLDDAAGEAFDKV 167 (342)
T ss_pred EEEecCceEEEEEcCCCcEEE-EeeechhhhhHHHHHH
Confidence 555667788888877 54222 1233443 35555554
No 148
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=22.79 E-value=42 Score=21.43 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=8.3
Q ss_pred ccccHHHHhh
Q 016461 368 FWISRDDYLE 377 (389)
Q Consensus 368 ~~itr~ey~e 377 (389)
.|||.+||+|
T Consensus 30 ~~IT~eey~e 39 (45)
T TIGR01669 30 KLITREQYKV 39 (45)
T ss_pred CccCHHHHHH
Confidence 5899999886
No 149
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=22.75 E-value=1.1e+02 Score=28.31 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHhCChhHHHHhhcCeEEecCCC-CCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceee
Q 016461 274 GMADMVFRCIQEMDIDNRMMLYQHIVLSGGST-MYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVY 352 (389)
Q Consensus 274 ~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s-~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w 352 (389)
.|...|..++++++.+.++---=.|+++||.- .-..+.+-+...|+.. ... .++....+ +.++-
T Consensus 243 ~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---------~~f---~~~~l~~~---k~ssA 307 (336)
T KOG1794|consen 243 TLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDT---------RGF---ERVELYRP---KESSA 307 (336)
T ss_pred HHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcc---------cCc---cceEEEee---cccch
Confidence 37778888889998887773222499999953 3444555555555432 011 23444443 56788
Q ss_pred ehHHHHhcCC
Q 016461 353 LGGAVLAGIM 362 (389)
Q Consensus 353 ~Gasi~a~~l 362 (389)
.||+++|..+
T Consensus 308 vgAA~laa~~ 317 (336)
T KOG1794|consen 308 VGAAILAASL 317 (336)
T ss_pred HHHHHHhhhh
Confidence 9999998733
No 150
>PF13941 MutL: MutL protein
Probab=22.15 E-value=69 Score=31.74 Aligned_cols=74 Identities=24% Similarity=0.283 Sum_probs=46.7
Q ss_pred CCeEEEecCCC------CCHHHHHHHHHHhhhhc-CCCe---------eeeehhhHHHH-----hhc-CCceEEEEEcCC
Q 016461 101 ECKILLTDPPL------NPAKNREKMVETMFEKY-NFAG---------VFIQIQAVLTL-----YAQ-GLLTGLVIDSGD 158 (389)
Q Consensus 101 ~~~vll~~~~~------~~~~~r~~l~~~lfe~~-~~~~---------v~~~~~~~~a~-----~~~-g~~tglVVDiG~ 158 (389)
..+++++++-+ +...-|+.+.+++.+.. +.|. --+.+.|-+.+ ++- +...-++||||+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 45777777642 34566777777765532 2222 22334443322 344 667889999999
Q ss_pred CceEEEEeeCCeeccc
Q 016461 159 GVTHVVPVVDGYSFPH 174 (389)
Q Consensus 159 ~~t~v~pv~dG~~~~~ 174 (389)
.+|+|-.|.+|.+...
T Consensus 258 ATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIP 273 (457)
T ss_pred cccchhhhccCCcccc
Confidence 9999999997765543
No 151
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=21.82 E-value=1.4e+02 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 81 ~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
+.++.|=+|+| ..+++||||+.....+....+.+++++-+.||
T Consensus 361 ~vl~aIk~~AF------~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifG 403 (746)
T KOG0169|consen 361 DVLRAIKKYAF------VTSPYPVILTLENHCSPDQQAKMAQMLKEIFG 403 (746)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHhh
Confidence 34555655665 56789999999999999999999999888776
No 152
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=21.72 E-value=6.2e+02 Score=23.13 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCChhHHHHhhcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeeh
Q 016461 275 MADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLG 354 (389)
Q Consensus 275 l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~G 354 (389)
|...|...+.-++++. |||.||.+..+-|.+.+++.+.+.. .|.. .++.+..+.....+.-.|
T Consensus 233 la~~l~n~~~~ldP~~-------IvlgG~~~~~~~~~~~l~~~~~~~~-------~~~~---~~~~i~~s~~~~~a~~~G 295 (303)
T PRK13310 233 LAICLGNILTIVDPHL-------VVLGGGLSNFDAIYEQLPKRLPRHL-------LPVA---RVPRIEKARHGDAGGVRG 295 (303)
T ss_pred HHHHHHHHHHHcCCCE-------EEECCcccChHHHHHHHHHHHHHHh-------cccc---cCceEEEcccCchHHHHh
Confidence 5556666666666654 7777776665556666666665431 1211 123444443345566778
Q ss_pred HHHHhc
Q 016461 355 GAVLAG 360 (389)
Q Consensus 355 asi~a~ 360 (389)
|+.++-
T Consensus 296 Aa~~~l 301 (303)
T PRK13310 296 AAFLHL 301 (303)
T ss_pred HHHHhh
Confidence 887763
No 153
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=21.42 E-value=77 Score=26.97 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=31.4
Q ss_pred hcCeEEecCCCCCCChHHHHHHHHHHhhhhhhhcCCCCCCcceeEEEeCCCCCcceeeehHHHHhc
Q 016461 295 YQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360 (389)
Q Consensus 295 ~~nIvl~GG~s~i~G~~~rl~~el~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 360 (389)
.+.|+++||.++-+-+.+.+.+-+. ..|.+... ...+-.||+++|.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~-----------------~~V~~~~~---~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG-----------------RPVVRPEV---EEASALGAALLAA 195 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT-----------------SEEEEESS---STHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC-----------------CceEeCCC---CchHHHHHHHHHH
Confidence 4679999999987777776665543 22333332 4568889999875
No 154
>PF13941 MutL: MutL protein
Probab=21.39 E-value=71 Score=31.67 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.9
Q ss_pred eEEEeCCCceEEEeecC--CCCCccc
Q 016461 6 VVVCDNGTGYVKCGFAG--ENFPNSV 29 (389)
Q Consensus 6 ~iiiD~Gs~~ik~G~ag--~~~P~~~ 29 (389)
.+++|+||.++|+-... +..++++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE
Confidence 68999999999998887 6666654
No 155
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=20.71 E-value=1.3e+02 Score=23.82 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=33.4
Q ss_pred cCCcccChhhHHHHHHHHhhhcCCCCCCCCeEEEecCCCCCHHHHHHHHHHhhhhcC
Q 016461 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (389)
Q Consensus 73 ~~g~i~d~~~~e~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 129 (389)
..|.+.|+..++++++.++...| ++..+.-.+++.....-|.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999988773223 34444433321222356788888887654
No 156
>PRK00047 glpK glycerol kinase; Provisional
Probab=20.25 E-value=91 Score=31.28 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=18.0
Q ss_pred CCCCCeEEEeCCCceEEEeecCCC
Q 016461 1 MDNRNVVVCDNGTGYVKCGFAGEN 24 (389)
Q Consensus 1 m~~~~~iiiD~Gs~~ik~G~ag~~ 24 (389)
||+.-.+.||+||.++|+.+...+
T Consensus 2 ~m~~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 2 MMKKYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CccCEEEEEecCCCceEEEEECCC
Confidence 343335779999999999987654
Done!