Query 016462
Match_columns 389
No_of_seqs 208 out of 422
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 2E-134 5E-139 1001.5 33.7 340 47-389 50-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 9E-120 2E-124 891.6 23.0 330 55-387 1-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 1E-101 2E-106 755.6 29.6 297 57-364 1-297 (297)
4 cd00657 Ferritin_like Ferritin 98.8 4.9E-08 1.1E-12 78.1 11.7 104 152-262 26-129 (130)
5 PF11583 AurF: P-aminobenzoate 98.0 0.00018 3.9E-09 70.4 14.4 216 55-283 5-244 (304)
6 cd01049 RNRR2 Ribonucleotide R 97.4 0.0047 1E-07 59.9 14.5 130 152-283 76-225 (288)
7 cd01041 Rubrerythrin Rubreryth 97.2 0.0048 1.1E-07 53.6 11.1 99 152-265 32-132 (134)
8 cd01055 Nonheme_Ferritin nonhe 97.0 0.0067 1.4E-07 53.5 10.5 109 151-269 33-142 (156)
9 cd01045 Ferritin_like_AB Uncha 96.9 0.015 3.3E-07 48.5 11.1 122 129-262 12-138 (139)
10 cd01046 Rubrerythrin_like rubr 96.8 0.018 4E-07 49.8 10.7 92 152-267 32-123 (123)
11 cd07911 RNRR2_Rv0233_like Ribo 96.7 0.039 8.5E-07 53.9 13.9 123 153-282 78-219 (280)
12 cd00907 Bacterioferritin Bacte 96.6 0.041 8.8E-07 48.1 11.7 115 151-276 35-149 (153)
13 PF00210 Ferritin: Ferritin-li 96.5 0.098 2.1E-06 44.0 13.5 109 150-266 28-139 (142)
14 PRK08326 ribonucleotide-diphos 96.5 0.041 9E-07 54.9 12.8 114 154-272 96-229 (311)
15 cd07908 Mn_catalase_like Manga 96.4 0.026 5.6E-07 50.0 9.7 104 152-262 46-153 (154)
16 PF00268 Ribonuc_red_sm: Ribon 96.4 0.12 2.5E-06 50.4 15.1 114 152-269 84-211 (281)
17 PF02915 Rubrerythrin: Rubrery 96.3 0.0029 6.3E-08 53.0 3.0 101 155-262 31-136 (137)
18 PF02915 Rubrerythrin: Rubrery 96.1 0.019 4.2E-07 48.0 6.7 54 212-266 3-56 (137)
19 cd01051 Mn_catalase Manganese 95.8 0.15 3.3E-06 46.3 11.8 57 206-265 98-154 (156)
20 PRK09614 nrdF ribonucleotide-d 95.8 0.18 4E-06 50.3 13.4 121 152-274 87-220 (324)
21 PRK10635 bacterioferritin; Pro 95.7 0.2 4.3E-06 45.6 12.0 104 152-266 37-141 (158)
22 PRK12759 bifunctional gluaredo 95.6 0.17 3.7E-06 52.4 12.6 115 152-272 175-302 (410)
23 cd01052 DPSL DPS-like protein, 95.3 0.27 5.9E-06 42.6 11.0 108 151-262 36-147 (148)
24 PRK07209 ribonucleotide-diphos 94.7 1.3 2.9E-05 45.3 15.7 117 152-272 127-268 (369)
25 COG1633 Uncharacterized conser 94.7 0.5 1.1E-05 43.9 11.6 114 152-268 52-171 (176)
26 TIGR00754 bfr bacterioferritin 94.7 0.76 1.6E-05 40.9 12.4 106 152-267 37-142 (157)
27 PTZ00211 ribonucleoside-diphos 94.7 0.78 1.7E-05 46.2 13.9 117 152-272 97-227 (330)
28 cd01044 Ferritin_CCC1_N Ferrit 94.4 0.083 1.8E-06 45.5 5.5 46 218-266 9-54 (125)
29 COG0208 NrdF Ribonucleotide re 94.2 1.3 2.9E-05 45.4 14.3 124 152-280 102-249 (348)
30 cd01056 Euk_Ferritin eukaryoti 93.6 0.42 9.1E-06 42.9 8.5 109 152-269 36-146 (161)
31 PRK13967 nrdF1 ribonucleotide- 93.5 2.8 6E-05 42.3 15.1 111 152-267 87-210 (322)
32 PF13668 Ferritin_2: Ferritin- 93.4 1 2.2E-05 38.9 10.4 98 152-264 37-136 (137)
33 cd01041 Rubrerythrin Rubreryth 92.9 0.59 1.3E-05 40.6 8.2 98 218-324 12-116 (134)
34 PRK13965 ribonucleotide-diphos 92.8 3.4 7.3E-05 41.9 14.6 105 156-265 104-221 (335)
35 PLN02492 ribonucleoside-diphos 92.7 2.3 4.9E-05 42.7 13.1 116 152-271 86-215 (324)
36 cd01045 Ferritin_like_AB Uncha 92.0 0.38 8.3E-06 40.0 5.7 48 217-267 8-55 (139)
37 PRK09101 nrdB ribonucleotide-d 91.4 7.9 0.00017 39.9 15.5 35 238-272 225-261 (376)
38 PF02332 Phenol_Hydrox: Methan 91.4 9 0.00019 36.8 14.9 143 119-272 77-233 (233)
39 cd01046 Rubrerythrin_like rubr 91.3 1.2 2.7E-05 38.4 8.2 88 218-319 12-99 (123)
40 PRK10304 ferritin; Provisional 91.0 3.7 8E-05 37.6 11.4 104 152-265 36-143 (165)
41 cd00657 Ferritin_like Ferritin 90.7 1.1 2.3E-05 35.4 6.8 50 215-267 6-55 (130)
42 PRK13966 nrdF2 ribonucleotide- 90.7 13 0.00028 37.5 16.0 115 152-272 89-217 (324)
43 PF04305 DUF455: Protein of un 90.4 5.4 0.00012 39.3 12.6 49 235-283 177-225 (253)
44 PRK13456 DNA protection protei 88.4 12 0.00027 35.4 12.9 139 115-264 19-163 (186)
45 COG1592 Rubrerythrin [Energy p 88.2 3.5 7.7E-05 38.3 9.0 81 223-313 20-100 (166)
46 cd07908 Mn_catalase_like Manga 88.2 1.1 2.3E-05 39.7 5.5 52 218-271 27-78 (154)
47 PF05138 PaaA_PaaC: Phenylacet 87.6 1.5 3.3E-05 43.1 6.7 159 161-335 54-225 (263)
48 cd01043 DPS DPS protein, ferri 87.5 7.6 0.00017 33.5 10.3 111 148-261 25-137 (139)
49 COG1633 Uncharacterized conser 85.7 2.7 5.8E-05 39.1 6.9 61 207-270 24-84 (176)
50 cd01044 Ferritin_CCC1_N Ferrit 85.3 4 8.7E-05 35.1 7.4 98 153-264 27-124 (125)
51 TIGR02029 AcsF magnesium-proto 84.4 1.9 4E-05 43.9 5.5 41 223-264 89-129 (337)
52 cd00904 Ferritin Ferritin iron 82.5 9.1 0.0002 34.5 8.7 107 152-267 36-144 (160)
53 cd01048 Ferritin_like_AB2 Unch 81.9 13 0.00029 32.6 9.4 92 163-262 36-134 (135)
54 CHL00185 ycf59 magnesium-proto 81.3 2.8 6.1E-05 42.9 5.5 41 223-264 95-135 (351)
55 cd01047 ACSF Aerobic Cyclase S 81.2 2.8 6E-05 42.5 5.3 41 223-264 79-119 (323)
56 cd01057 AAMH_A Aromatic and Al 80.8 24 0.00052 37.7 12.4 115 154-272 108-235 (465)
57 PRK13654 magnesium-protoporphy 80.7 2.9 6.3E-05 42.9 5.3 41 223-264 99-139 (355)
58 PLN02508 magnesium-protoporphy 79.9 2.7 5.9E-05 43.0 4.8 41 223-264 95-135 (357)
59 cd07910 MiaE MiaE tRNA-modifyi 79.3 17 0.00036 34.4 9.4 109 153-268 48-160 (180)
60 PRK12775 putative trifunctiona 78.3 30 0.00065 40.2 13.1 142 115-271 859-1003(1006)
61 cd01058 AAMH_B Aromatic and Al 74.4 36 0.00079 34.2 11.0 113 153-272 129-260 (304)
62 TIGR02029 AcsF magnesium-proto 73.8 5.5 0.00012 40.7 5.0 25 153-177 185-209 (337)
63 cd01047 ACSF Aerobic Cyclase S 71.9 4.7 0.0001 40.9 4.0 53 133-189 155-207 (323)
64 PRK12775 putative trifunctiona 71.6 6.1 0.00013 45.7 5.4 53 210-265 863-915 (1006)
65 PLN02508 magnesium-protoporphy 69.1 6.2 0.00013 40.5 4.2 25 153-177 191-215 (357)
66 CHL00185 ycf59 magnesium-proto 68.1 7.6 0.00016 39.9 4.6 25 153-177 191-215 (351)
67 TIGR02158 PA_CoA_Oxy3 phenylac 64.3 86 0.0019 30.7 10.9 117 162-283 31-153 (237)
68 PF00268 Ribonuc_red_sm: Ribon 64.1 16 0.00035 35.6 6.0 90 160-273 29-118 (281)
69 cd01048 Ferritin_like_AB2 Unch 64.1 14 0.0003 32.5 5.0 49 211-265 4-52 (135)
70 PRK13654 magnesium-protoporphy 61.2 4.6 9.9E-05 41.5 1.6 25 153-177 195-219 (355)
71 cd01055 Nonheme_Ferritin nonhe 60.7 22 0.00048 31.1 5.7 48 218-265 14-61 (156)
72 COG4445 MiaE Hydroxylase for s 60.0 18 0.00039 34.1 5.1 121 160-289 65-191 (203)
73 COG2833 Uncharacterized protei 54.5 91 0.002 31.0 9.1 80 229-324 180-263 (268)
74 cd00907 Bacterioferritin Bacte 54.2 33 0.00071 29.8 5.6 47 219-265 17-63 (153)
75 PF05067 Mn_catalase: Manganes 53.5 1.2E+02 0.0025 30.7 10.0 112 156-270 56-198 (283)
76 COG1592 Rubrerythrin [Energy p 52.3 27 0.0006 32.5 5.0 41 228-268 91-131 (166)
77 cd01042 DMQH Demethoxyubiquino 48.6 38 0.00082 31.4 5.3 37 236-273 26-62 (165)
78 COG2186 FadR Transcriptional r 48.5 43 0.00094 32.2 5.9 61 220-283 149-225 (241)
79 cd01050 Acyl_ACP_Desat Acyl AC 48.5 73 0.0016 32.2 7.7 82 207-290 59-144 (297)
80 PRK15022 ferritin-like protein 48.2 2.3E+02 0.005 26.3 11.9 104 152-265 36-140 (167)
81 TIGR02156 PA_CoA_Oxy1 phenylac 47.7 3.1E+02 0.0068 27.7 15.1 157 163-333 63-232 (289)
82 PF13763 DUF4167: Domain of un 46.7 45 0.00098 27.7 4.9 36 225-267 41-76 (80)
83 TIGR03225 benzo_boxB benzoyl-C 46.6 99 0.0021 32.9 8.4 106 159-269 142-256 (471)
84 COG3396 Uncharacterized conser 42.8 26 0.00056 35.0 3.5 78 238-339 45-126 (265)
85 PF06175 MiaE: tRNA-(MS[2]IO[6 42.6 23 0.00049 34.9 3.0 126 120-269 85-212 (240)
86 PF09968 DUF2202: Uncharacteri 42.4 1.8E+02 0.004 27.0 8.7 91 164-265 36-140 (162)
87 cd01052 DPSL DPS-like protein, 42.3 94 0.002 26.7 6.6 59 219-278 18-76 (148)
88 PRK08326 ribonucleotide-diphos 41.0 47 0.001 33.3 5.1 28 239-266 95-122 (311)
89 cd01051 Mn_catalase Manganese 40.5 57 0.0012 29.7 5.1 51 216-268 32-82 (156)
90 cd07911 RNRR2_Rv0233_like Ribo 40.4 96 0.0021 30.3 7.1 33 236-268 75-107 (280)
91 COG1528 Ftn Ferritin-like prot 39.8 3.3E+02 0.007 25.6 10.2 106 151-267 35-142 (167)
92 cd01049 RNRR2 Ribonucleotide R 39.2 53 0.0012 31.8 5.0 33 236-268 74-106 (288)
93 PRK13778 paaA phenylacetate-Co 37.0 4.8E+02 0.01 26.8 15.6 115 162-283 80-201 (314)
94 smart00337 BCL BCL (B-Cell lym 36.8 56 0.0012 27.3 4.1 34 252-286 9-42 (100)
95 PRK13456 DNA protection protei 36.0 3.9E+02 0.0086 25.5 10.5 109 215-325 28-146 (186)
96 PF07742 BTG: BTG family; Int 34.4 57 0.0012 28.6 4.0 68 172-251 11-82 (118)
97 PF06667 PspB: Phage shock pro 33.0 81 0.0018 25.8 4.3 43 323-370 22-64 (75)
98 PRK09458 pspB phage shock prot 31.2 72 0.0016 26.2 3.7 43 324-371 23-65 (75)
99 PRK07209 ribonucleotide-diphos 31.2 1.1E+02 0.0023 31.6 6.0 41 232-273 121-161 (369)
100 TIGR00865 bcl-2 Apoptosis regu 31.0 98 0.0021 29.9 5.3 34 252-286 79-112 (213)
101 KOG1248 Uncharacterized conser 28.3 2.6E+02 0.0056 33.5 8.8 103 238-365 826-928 (1176)
102 PF08855 DUF1825: Domain of un 28.2 58 0.0013 28.5 2.9 52 300-352 16-74 (108)
103 PRK09614 nrdF ribonucleotide-d 27.5 1.7E+02 0.0036 29.3 6.5 35 232-266 81-115 (324)
104 PF12902 Ferritin-like: Ferrit 26.0 1.2E+02 0.0026 29.4 4.9 49 218-266 7-55 (227)
105 PF00452 Bcl-2: Apoptosis regu 26.0 1.4E+02 0.0031 24.2 4.8 33 252-284 9-41 (101)
106 PF04305 DUF455: Protein of un 25.1 56 0.0012 32.3 2.5 21 245-265 104-124 (253)
107 PF11583 AurF: P-aminobenzoate 24.9 1.8E+02 0.0039 28.5 6.1 30 238-267 111-140 (304)
108 PRK10421 DNA-binding transcrip 24.2 2.7E+02 0.0059 26.4 7.0 60 221-283 141-218 (253)
109 cd06102 citrate_synt_like_2 Ci 24.0 7.4E+02 0.016 24.8 11.9 42 272-314 164-207 (282)
110 PF13668 Ferritin_2: Ferritin- 23.9 2.4E+02 0.0051 24.2 6.0 29 236-264 35-63 (137)
111 COG2406 Protein distantly rela 23.6 6.2E+02 0.013 23.7 9.2 141 115-264 16-160 (172)
112 TIGR02976 phageshock_pspB phag 22.7 1.5E+02 0.0034 24.1 4.2 43 323-370 22-64 (75)
113 PRK11414 colanic acid/biofilm 21.1 2.8E+02 0.006 25.7 6.3 59 222-283 135-209 (221)
114 COG3396 Uncharacterized conser 21.0 8.7E+02 0.019 24.5 11.5 117 161-283 56-179 (265)
115 TIGR01392 homoserO_Ac_trn homo 20.6 84 0.0018 31.1 2.8 49 312-360 104-155 (351)
116 PRK06765 homoserine O-acetyltr 20.5 96 0.0021 32.0 3.3 49 312-360 138-189 (389)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=2.5e-134 Score=1001.46 Aligned_cols=340 Identities=75% Similarity=1.240 Sum_probs=333.8
Q ss_pred cccccCCCCcchHHHHHhhHHHHHHHhhhhccccccCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 016462 47 RDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMI 126 (389)
Q Consensus 47 ~~~~~~~~~~~~~ev~~~Le~~ve~~~~~~L~pv~~~WqP~D~lP~~~~~~~F~~~v~~lr~~a~~Lpdd~~v~Lv~~mi 126 (389)
+.|++|+|+|+|+|||++|||||++||++||||+|++|||||||||+ +|+||+++|++||+++++|||+++||||||||
T Consensus 50 ~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~-~~~~F~~~v~~lr~~~~~Lpd~~~v~Lvgdmi 128 (390)
T PLN00179 50 HVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDP-ASEGFYDQVKELRERAAELPDDYFVVLVGDMI 128 (390)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCC-ccCChHHHHhhhhHhhcCCChhhhhhhhhcch
Confidence 78999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hccCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCC
Q 016462 127 TEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFEN 206 (389)
Q Consensus 127 TEd~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~ 206 (389)
|||||||||++||++||++|++|+++++|++|+++||||||||||+||+||||||+|||+++|+++||+|++||++++++
T Consensus 129 TEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~~~ 208 (390)
T PLN00179 129 TEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTEN 208 (390)
T ss_pred hhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc
Q 016462 207 NPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 286 (389)
Q Consensus 207 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i 286 (389)
+||++|+||||||+||+|||+|||++|+++|||+|++||++||+||+||+.||++||+++||+|||+||.||++||++||
T Consensus 209 ~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~tm~Aiadmm~~ki 288 (390)
T PLN00179 209 NPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADMMRKKI 288 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCCCCCCCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhhh
Q 016462 287 RMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKAL 366 (389)
Q Consensus 287 ~MPa~~m~d~~~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~ 366 (389)
+||||+|+||+|+++|+||++++||+||||++||.|||++||++|+|++++|||+||+|||||||+||+||+|++||++
T Consensus 289 ~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era~- 367 (390)
T PLN00179 289 TMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERAQ- 367 (390)
T ss_pred CCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCC-CcccceeeCCcccC
Q 016462 367 VDTAKKGGS-AVPFGWVFGQEIRI 389 (389)
Q Consensus 367 ~~~~~~~~~-~~~f~wi~~~~~~~ 389 (389)
+|++++++ .++|||||+|+|.|
T Consensus 368 -~~~~~~~~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 368 -DRAKKAKPPSIPFSWIFDREVRL 390 (390)
T ss_pred -hHHhccCCCCCceeeecCCccCC
Confidence 88776534 78999999999975
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=9e-120 Score=891.55 Aligned_cols=330 Identities=55% Similarity=0.952 Sum_probs=291.4
Q ss_pred CcchHHHHHhhHHHHHHHhhhhccccccCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhccCcchH
Q 016462 55 APEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTY 134 (389)
Q Consensus 55 ~~~~~ev~~~Le~~ve~~~~~~L~pv~~~WqP~D~lP~~~~~~~F~~~v~~lr~~a~~Lpdd~~v~Lv~~miTEd~LPtY 134 (389)
||+|+|||++|||||++||++||+|++++|||||||||+ +|+||.+++++||++|++|||++++|||||||||||||||
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~-~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY 79 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWS-EGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSY 79 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GC-CSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCC-ccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHH
Confidence 689999999999999999999999999999999999999 9999988999999999999999999999999999999999
Q ss_pred HHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHH
Q 016462 135 QTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVY 214 (389)
Q Consensus 135 ~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vY 214 (389)
|++|+++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|+++++++..||+++++++|+++|+|
T Consensus 80 ~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vY 159 (330)
T PF03405_consen 80 HRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVY 159 (330)
T ss_dssp HHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHH
T ss_pred HHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCC
Q 016462 215 TSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMY 294 (389)
Q Consensus 215 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~ 294 (389)
|||||+||++||+|||++|+.+|||||++||++||+||+||+.||+++|+++|++|||++|.||++||+++|+|||++|+
T Consensus 160 tsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~ 239 (330)
T PF03405_consen 160 TSFQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMP 239 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977999999999
Q ss_pred CCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhccCC
Q 016462 295 DGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGG 374 (389)
Q Consensus 295 d~~~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~~~ 374 (389)
||+++++|++|++++|++||||+++|.+||++||++|+|++++|||++|++||||||+||.|++||+||++ .|+++..
T Consensus 240 dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~--~~~~~~~ 317 (330)
T PF03405_consen 240 DGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERAD--RRAARMA 317 (330)
T ss_dssp -SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTS--TTTSSS-
T ss_pred cCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHH--HHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 7766543
Q ss_pred CCcccceeeCCcc
Q 016462 375 SAVPFGWVFGQEI 387 (389)
Q Consensus 375 ~~~~f~wi~~~~~ 387 (389)
..++|||||+|+|
T Consensus 318 ~~~~fswif~r~v 330 (330)
T PF03405_consen 318 KPVPFSWIFNREV 330 (330)
T ss_dssp -EEE-GGGTT-EE
T ss_pred CCCceeeecCCCC
Confidence 5789999999987
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=1.1e-101 Score=755.63 Aligned_cols=297 Identities=61% Similarity=1.033 Sum_probs=287.7
Q ss_pred chHHHHHhhHHHHHHHhhhhccccccCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhccCcchHHH
Q 016462 57 EKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQT 136 (389)
Q Consensus 57 ~~~ev~~~Le~~ve~~~~~~L~pv~~~WqP~D~lP~~~~~~~F~~~v~~lr~~a~~Lpdd~~v~Lv~~miTEd~LPtY~~ 136 (389)
.|+|||++|||||++||+++|+|++++|||||||||+ +++||..++++||++|++||++++++|++|||||||||+||+
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~-~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~ 79 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDS-ASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHS 79 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCC-CCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHH
Confidence 3789999999999999999999999999999999999 899998899999999999999999999999999999999999
Q ss_pred HhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHH
Q 016462 137 MLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTS 216 (389)
Q Consensus 137 ~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYts 216 (389)
+||++||++++ ++++|++|+++||+||||||++|++||++||+|||+++|++++++++.||+++++++|+++|+|+|
T Consensus 80 ~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~ 156 (297)
T cd01050 80 MLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTS 156 (297)
T ss_pred HHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Confidence 99999998765 679999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCC
Q 016462 217 FQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDG 296 (389)
Q Consensus 217 fQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~ 296 (389)
|||+||++||+||+++++ +|||||++||++||+||+||++||+++|+++|++||+++|.||++||+ +|+|||+.|.
T Consensus 157 fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~-~~~MP~~~~~-- 232 (297)
T cd01050 157 FQELATRISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMR-KIVMPGHLMY-- 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH-hCCCChhhhh--
Confidence 999999999999999987 799999999999999999999999999999999999999999999997 5999999995
Q ss_pred CcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhh
Q 016462 297 QDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENK 364 (389)
Q Consensus 297 ~~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~ 364 (389)
.+|++|++++|++||||+.+|++||+++|++|+|++++|||+||+|||||||+||+|++|++||+
T Consensus 233 ---~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 ---PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred ---hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 34889999999999999999999999999999999999999999999999999999999999874
No 4
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.84 E-value=4.9e-08 Score=78.11 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=82.0
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 231 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 231 (389)
+..+..+...|..||.+|.+.|.+++.--|...+..... ....+.......++...+.+....|..+...|.++.+
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~ 101 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH----LLAAYALPKTSDDPAEALRAALEVEARAIAAYRELIE 101 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHhcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999996655433332222 1112223333468889999999999999999999777
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 232 LVKKHGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 232 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
. ..||.+++++..|+.||.+|..+++++
T Consensus 102 ~---~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 102 Q---ADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred h---cCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 459999999999999999999999875
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.97 E-value=0.00018 Score=70.38 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=126.2
Q ss_pred CcchHHHHHh-hHHHHHHHh---hhhcc-----------ccccCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHH
Q 016462 55 APEKVEIFRS-LETWAEQNV---LIHLK-----------PVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFV 119 (389)
Q Consensus 55 ~~~~~ev~~~-Le~~ve~~~---~~~L~-----------pv~~~WqP~D~lP~~~~~~~F~~~v~~lr~~a~~Lpdd~~v 119 (389)
.++..++++. ++.|++..- ++.+. +..+.|.|.+++|-- .-+-|.....+-|.+-.. -.+.-
T Consensus 5 ~~~~~~~~~rL~~~~~~r~~v~~dp~~didWd~~~~~~~~~~~~~~p~~~~pl~-gtp~~~~l~~~~r~~l~~--~~~~~ 81 (304)
T PF11583_consen 5 DPDREETLQRLLESWARRSYVRSDPETDIDWDAPDDEDFDPDRPWLPPELLPLY-GTPLWERLSEEQRIELLR--HEWAN 81 (304)
T ss_dssp -----HHHHHHHHHHHHH-HHHHSTTGG------GGTT--TTS-SS-GGGSTTT-T-HHHHTS-HHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccCCchhhhhhhhhhcccCCCcccCCCcccCccC-CCHHHHhCCHHHHHHHHH--HHHHH
Confidence 3455556544 678888888 66631 346777777877765 333343222222221111 23333
Q ss_pred HHHHHhhhccCcc--hHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhc-------CCChHHHHH
Q 016462 120 ALVGEMITEEALP--TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSG-------RVDMKQIEK 190 (389)
Q Consensus 120 ~Lv~~miTEd~LP--tY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSg-------rvDp~~lE~ 190 (389)
.+...+..|..+- .....+...++. ..+.+...+..+...||++|...-.+|+-.+| ...+....+
T Consensus 82 ~~~~~i~~E~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~ 156 (304)
T PF11583_consen 82 YLSQGIWFEQGLVNPAFRMLARDRFPS-----DPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRR 156 (304)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT-STT-----TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHH
Confidence 4444555665554 444444455543 12456677788999999999999999997777 112222233
Q ss_pred HHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016462 191 SIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 270 (389)
Q Consensus 191 ~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 270 (389)
....+ ...+.+. ..+...|+..++-|.....+.+.+.+ ...-.|.++++++....||+||..|+..+++.....-
T Consensus 157 ~~~~l-~~~~~~~--~~~~~~~~~~lv~Ee~i~~~~~~~~~--D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l 231 (304)
T PF11583_consen 157 LLRRL-ARLLPPW--ERGLLFFAFALVAEEIIDAYQREIAR--DETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRL 231 (304)
T ss_dssp HHHHH-HTS-SHH--HHHHHHHHHHHHHHHSBHHHHHHHHT---SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHhcccc--cchHHHHHHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222 2222211 12466788888888887766555433 1223799999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHh
Q 016462 271 PDDTILALAGMMK 283 (389)
Q Consensus 271 Pd~tm~Aia~mm~ 283 (389)
+......++..+.
T Consensus 232 ~~~~r~~~~~~l~ 244 (304)
T PF11583_consen 232 SPAERRALAELLP 244 (304)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8887777777664
No 6
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=97.39 E-value=0.0047 Score=59.89 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=85.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCCh--H----------HHHHHHHHHHHcCCCCC---CCCCchhhHHHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDM--K----------QIEKSIQYLIRSGMDPK---FENNPYNGFVYTS 216 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp--~----------~lE~~~~~li~~G~d~~---~~~~p~~~~vYts 216 (389)
.++...+...+.++|+.|+.+-..++-.-+. |+ . .+.+..+ .+..-++-. +..+.+..++.-.
T Consensus 76 ~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~-~~e~~~~~~~~~~~~~l~~k~~-~~~~~~~~~~~~~~~~~~~~lv~~~ 153 (288)
T cd01049 76 IPEARAFYGFQAFMENIHSESYSYILDTLGK-DEERDELFEAIETDPALKKKAD-WILRWYDNLDDNTKESFAERLVAFA 153 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHhcCHHHHHHHH-HHHHHHHhhhhchHHHHHHHHHHHH
Confidence 4677788999999999999999999854333 21 1 1111111 222222211 1124566666547
Q ss_pred HhhhhhH-HHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh----hHHHHHHHHHh
Q 016462 217 FQERATF-ISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD----DTILALAGMMK 283 (389)
Q Consensus 217 fQE~AT~-ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd----~tm~Aia~mm~ 283 (389)
+.|..-+ .++..+..+++..-=|.++++...|++||.+|..|...+++.++...|+ .....+.++++
T Consensus 154 ~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~ 225 (288)
T cd01049 154 ILEGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIK 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Confidence 8887766 4556555565433358899999999999999999999999999998875 33444445443
No 7
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.20 E-value=0.0048 Score=53.62 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=78.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhh-hHHHHHhH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERA-TFISHGNT 229 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~-lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~A-T~ish~nt 229 (389)
....+.|.+.=..||..|+..+.+|+. +-|.++ .. +...++....|-..--.|.. +...|.++
T Consensus 32 ~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~------------~~---~~~~~~~~~~l~~~~~~E~~e~~~~y~~~ 96 (134)
T cd01041 32 YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT------------GP---PIGIGDTLENLKAAIAGETYEYTEMYPEF 96 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------CC---CCCcchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567889999889999999999999994 434433 01 11113556677777777874 66788999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 230 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 230 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
.++|...||...+.+...|+.||..|...|.+.+..
T Consensus 97 ~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 97 AEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988765
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.03 E-value=0.0067 Score=53.52 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=87.3
Q ss_pred CchhHHHHhhhchhHhhhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhH
Q 016462 151 SLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 229 (389)
Q Consensus 151 ~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSg-rvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt 229 (389)
..+.++.|.+....||-.|+..+-+|+..-| .++...+... .. ...++...+-...-.|+.....|.++
T Consensus 33 ~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~---------~~-~~~~~~~~l~~al~~E~~~~~~~~~l 102 (156)
T cd01055 33 GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAP---------PS-EFESLLEVFEAALEHEQKVTESINNL 102 (156)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC---------Cc-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999995543 5554333321 00 11366777777777888888899999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016462 230 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 269 (389)
Q Consensus 230 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 269 (389)
.++|...||++...++..|..||..|...+.+++..+-..
T Consensus 103 ~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~~ 142 (156)
T cd01055 103 VDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLA 142 (156)
T ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999989999999999999999999999999999866544
No 9
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.90 E-value=0.015 Score=48.51 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=79.1
Q ss_pred cCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCC---CCC
Q 016462 129 EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSG--RVDMKQIEKSIQYLIRSGM---DPK 203 (389)
Q Consensus 129 d~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSg--rvDp~~lE~~~~~li~~G~---d~~ 203 (389)
.+.-.|........ +..-..+...=..||-+|...|...+.-.+ .+.+..............+ ...
T Consensus 12 ~~~~~Y~~~a~~~~---------~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (139)
T cd01045 12 EAAEFYLELAEKAK---------DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALE 82 (139)
T ss_pred HHHHHHHHHHhHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHH
Confidence 34445665544433 346677888888999999999999985543 2221111111111111100 011
Q ss_pred CCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 204 FENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 204 ~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
...+....+-...--|......|.++++ ..+||..+.++.+|+.||.+|...+.+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235566677777778888888998655 5789999999999999999999988764
No 10
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.75 E-value=0.018 Score=49.81 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=73.2
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 231 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 231 (389)
....+.|.+.=..||..|+..+.+++ +.+. +|....|-...-.|..-...|.++.+
T Consensus 32 ~~~~A~~f~~~a~eE~~HA~~~~~~l---~~i~---------------------~~~~~~le~a~~~E~~~~~~~~~~~~ 87 (123)
T cd01046 32 YPEVAEELKRIAMEEAEHAARFAELL---GKVS---------------------EDTKENLEMMLEGEAGANEGKKDAAT 87 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCc---------------------ccHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 56788899988999999999999976 3221 24444555555556555556889999
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 232 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 232 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
.|..-||...+..+..|+.||..|...|.+.+++++
T Consensus 88 ~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~~ 123 (123)
T cd01046 88 EAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERYF 123 (123)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999988763
No 11
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.71 E-value=0.039 Score=53.91 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=73.9
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHHHHhcCC-ChHH------HHHHHH---HHHHcCCCCCCCCCch---h-hHHHHHHh
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYLYLSGRV-DMKQ------IEKSIQ---YLIRSGMDPKFENNPY---N-GFVYTSFQ 218 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrv-Dp~~------lE~~~~---~li~~G~d~~~~~~p~---~-~~vYtsfQ 218 (389)
.+...+...=..+|++|+.+-..++-.-+.- |... .....+ ..+. ++ ...+++. . .++|..+.
T Consensus 78 ~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~a~~~~~~~l 154 (280)
T cd07911 78 LEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAEL-RL--YLDASPAAQVRASVTYNMIV 154 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHH-hh--cCCCChHHHHHHHHHHHHHH
Confidence 3445567788899999999999999432321 1111 111111 1122 11 1122332 2 34466678
Q ss_pred hhhhHHH-----HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 016462 219 ERATFIS-----HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMM 282 (389)
Q Consensus 219 E~AT~is-----h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 282 (389)
|-.-+-+ +..+++ .---|.+.++...|.+||.+|-.|...+++.+...+|. ....+.+.+
T Consensus 155 EGilf~sgF~~~~~~l~~---~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~-~~~~~~e~~ 219 (280)
T cd07911 155 EGVLAETGYYAWRTICEK---RGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDA-NWDVFEERM 219 (280)
T ss_pred HHHHHHHHHHHHHHHHhh---cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChh-HHHHHHHHH
Confidence 8744332 222322 22279999999999999999999999999999988873 333344444
No 12
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.57 E-value=0.041 Score=48.09 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=83.7
Q ss_pred CchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 151 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 151 ~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
+......|...=..||-+|.+.+.+|+.--|. .|..-. + . .+....+....+-...=.|.-+...|+.+.
T Consensus 35 ~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg-~p~~~~--~-----~--~~~~~~~~~~~l~~~l~~E~~~~~~y~~~~ 104 (153)
T cd00907 35 GLEKLAERFRKESIEEMKHADKLIERILFLEG-LPNLQR--L-----G--KLRIGEDVPEMLENDLALEYEAIAALNEAI 104 (153)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCc--C-----C--CCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888889999999999999955443 222100 0 0 111112445566666667888888899999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHH
Q 016462 231 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTIL 276 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~ 276 (389)
++|...+|+....++..|.+||..|..+|.+.++.+ +..++++-+
T Consensus 105 ~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~-~~~g~~~~~ 149 (153)
T cd00907 105 ALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLI-DKMGLQNYL 149 (153)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCHHHHH
Confidence 999888999999999999999999999999999764 444444433
No 13
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.54 E-value=0.098 Score=43.98 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=86.8
Q ss_pred CCchhHHHHhhhchhHhhhHHHHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHH
Q 016462 150 ASLTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VD--MKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISH 226 (389)
Q Consensus 150 ~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgr-vD--p~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish 226 (389)
....+.+.+......||..|++.+.+|+.--|. .. +..+.+ +. .|....++...|-..---|......+
T Consensus 28 ~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~-----~~---~~~~~~~~~~~l~~~l~~e~~~~~~~ 99 (142)
T PF00210_consen 28 PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE-----IP---KPPEWTDPREALEAALEDEKEIIEEY 99 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH-----HH---SSSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh-----hh---ccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999966554 22 222222 11 12112477788888888888889999
Q ss_pred HhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 227 GNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 227 ~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
..+.++|...+|+.+..++..+..||..|..+...++..+
T Consensus 100 ~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 100 RELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888999999999999999999999999988764
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=96.52 E-value=0.041 Score=54.93 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=70.6
Q ss_pred hHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHH------HHHHH-----HcCCCCCCCCCc---hhhHH-HHHHh
Q 016462 154 SWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS------IQYLI-----RSGMDPKFENNP---YNGFV-YTSFQ 218 (389)
Q Consensus 154 ~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~------~~~li-----~~G~d~~~~~~p---~~~~v-YtsfQ 218 (389)
+-..+...=..+|++|..+-..|+-.-|..+. +... .+..+ ....+....+++ +..++ |..+.
T Consensus 96 e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~i 173 (311)
T PRK08326 96 EDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED--LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVV 173 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 44556777889999999999999854444321 1111 11110 000111111222 33333 66678
Q ss_pred hhhhHHH-----HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 219 ERATFIS-----HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 219 E~AT~is-----h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
|-.-+.+ ..++++ .---|.++++...|.+||.+|-.|...+++.+...+|.
T Consensus 174 EGi~f~sgF~~~~~~l~~---~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~ 229 (311)
T PRK08326 174 EGVLAETGYYAWRKICVT---RGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDS 229 (311)
T ss_pred HHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 8744322 123333 23369999999999999999999999999999988885
No 15
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.43 E-value=0.026 Score=50.04 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=69.2
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHH-HHhcCCChHHHHHHHHHHHHcCCCC---CCCCCchhhHHHHHHhhhhhHHHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSIQYLIRSGMDP---KFENNPYNGFVYTSFQERATFISHG 227 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL-~lSgrvDp~~lE~~~~~li~~G~d~---~~~~~p~~~~vYtsfQE~AT~ish~ 227 (389)
+..-..-+..=..||-+|...|.+.+ .+.|. |........ ....|.. ....++...+-...-.|..+-.+|.
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~--p~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~ 121 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGD--PRYRSSSSD--KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYK 121 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccchhhccc--cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677789999999999987 44333 331111110 0001111 1113444555556667889999999
Q ss_pred hHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 228 NTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 228 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
++++ ..+||.+++++..|+.||..|...+.++
T Consensus 122 ~~~~---~~~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 122 RQAE---TIKDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9666 5789999999999999999999988765
No 16
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=96.43 E-value=0.12 Score=50.45 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=76.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHH-------------HHHHHHHHHHcCCCCCCCCCchhhHHHHHHh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ-------------IEKSIQYLIRSGMDPKFENNPYNGFVYTSFQ 218 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~-------------lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQ 218 (389)
.++...+...+.++|+.|..+-..++-.-+ -|+.. +.+..+ .+..-++.. .+....+++-.+-
T Consensus 84 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~~~~~~~~~~~~~~l~~k~~-~i~~~~~~~--~~~~~~lv~~~~l 159 (281)
T PF00268_consen 84 SPEIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKERDEIFDWVEEDPELQKKLD-WIEKWYEDN--DSLAEKLVASVIL 159 (281)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHSHHHHHHHH-HHHHHHCSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhhhHHhhHHH-HHHhhchhh--hhHHHHHHHHHHH
Confidence 567788899999999999999999995545 34532 222222 333334422 2234456777777
Q ss_pred hhhhHHH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016462 219 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 269 (389)
Q Consensus 219 E~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 269 (389)
|..-+.+ +.-+.-+++.-.=|.+.++.+.|.+||.+|..|...+++.+.+.
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE 211 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8763322 22333343333358999999999999999999999999998865
No 17
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.34 E-value=0.0029 Score=52.99 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=63.7
Q ss_pred HHHHhhhchhHhhhHHHHHHHHHHH-hcCCChHHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHh-hhhhHHHHHhH
Q 016462 155 WATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKSIQYLIRSGMDPKFEN---NPYNGFVYTSFQ-ERATFISHGNT 229 (389)
Q Consensus 155 W~~Wv~~WTAEEnRHG~aL~~YL~l-SgrvDp~~lE~~~~~li~~G~d~~~~~---~p~~~~vYtsfQ-E~AT~ish~nt 229 (389)
-..-...=..+|.+|...|.+.+-- .+..+|......+ ...+.+.... ..+...+..+.+ |.-+..+|.++
T Consensus 31 ~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~ 106 (137)
T PF02915_consen 31 LKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKV----EYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAEL 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCC----CHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhh----hhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566667899999999988832 1222332111100 0111111111 114455555555 77777888885
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 230 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 230 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
++ ..+||..++++..|+.||.+|...|.++
T Consensus 107 a~---~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 107 AR---KAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HH---HTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 6889999999999999999999999875
No 18
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.09 E-value=0.019 Score=48.01 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 212 FVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 212 ~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
+-..+-.|.....+|..+++.++.-| |.+++++..||.||.+|..++.++.+.+
T Consensus 3 L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 3 LEMAIKMELEAAKFYRELAEKAKDEG-PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456678889999999999876556 9999999999999999999999999876
No 19
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=95.82 E-value=0.15 Score=46.32 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 206 NNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 206 ~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
+++..-+.+..--|.....-|.++.+. +.||.+..++.+|..||..|..-|.+.++.
T Consensus 98 ~d~~~~L~~ni~aE~~Ai~~Y~~l~~~---~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 98 GNLVADLRSNIAAESRARLTYERLYEM---TDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777888888889886664 679999999999999999999999998875
No 20
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=95.82 E-value=0.18 Score=50.26 Aligned_cols=121 Identities=17% Similarity=0.041 Sum_probs=74.5
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHH------------HHHHHHHHHHcCCCCCCCCCchhhHHHHHHhh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ------------IEKSIQYLIRSGMDPKFENNPYNGFVYTSFQE 219 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~------------lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE 219 (389)
.++...+...+.++|+.|+.+-...+-.-+. +.+. +.+ +...+..-++......-...+++..+.|
T Consensus 87 ~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~-~~~~~~~f~~~~~~p~l~~-K~~~i~~~~~~~~~~~~~~~~~~~~~lE 164 (324)
T PRK09614 87 TPEEEAVLANIAFMEAVHAKSYSYIFSTLCS-PEEIDEAFEWAEENPYLQK-KADIIQDFYEPLKKKILRKAAVASVFLE 164 (324)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667889999999999999998877743222 2222 111 1111122222211123345566666667
Q ss_pred hhhHHH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhH
Q 016462 220 RATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDT 274 (389)
Q Consensus 220 ~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~t 274 (389)
..-+-+ ..-+--+++.--=|.++++...|++||.+|..|...+++.++...|...
T Consensus 165 gi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~ 220 (324)
T PRK09614 165 GFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELE 220 (324)
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhh
Confidence 543322 1111122222224789999999999999999999999999998887643
No 21
>PRK10635 bacterioferritin; Provisional
Probab=95.70 E-value=0.2 Score=45.64 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=82.2
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~-lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
...++.|...=..||-+|++.|-+++. +=|..+...+. ...++ .|+...|-..---|+-+--.|+...
T Consensus 37 ~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~---------~~~~g--~~v~eml~~dl~~E~~ai~~y~e~i 105 (158)
T PRK10635 37 LMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLG---------KLNIG--EDVEEMLRSDLRLELEGAKDLREAI 105 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---------CCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776558999999999999994 44444544442 12223 4777788888888998888999999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 231 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
++|...+|++-++++..|-.||..|...+.+.++.+
T Consensus 106 ~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i 141 (158)
T PRK10635 106 AYADSVHDYVSRDMMIEILADEEGHIDWLETELDLI 141 (158)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999998887753
No 22
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.58 E-value=0.17 Score=52.40 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHH---------HHHHHHcCCCCCCCCCchhhHHHHHHhhhhh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS---------IQYLIRSGMDPKFENNPYNGFVYTSFQERAT 222 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~---------~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT 222 (389)
.++-..+...|+++|+-|+.+-...+-.=+. +.+..... .+.+. ..++.....-+..++...|.|-.-
T Consensus 175 ~pE~~~~~~~q~~~E~iHsesYs~il~tl~~-~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~lv~~~~lEgi~ 251 (410)
T PRK12759 175 NNEIRNMLGSFAAREGIHQRAYALLNDTLGL-PDSEYHAFLEYKAMTDKIDFMM--DADPTTRRGLGLCLAKTVFNEGVA 251 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhHHHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999987766532121 22222211 12221 122222122345577777777632
Q ss_pred H----HHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 223 F----ISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 223 ~----ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
+ .+--++++ .--=|.++++...|++||..|-.|...++..+++..|+
T Consensus 252 Fys~Fa~~~~l~~---~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 302 (410)
T PRK12759 252 LFASFAMLLNFQR---FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY 302 (410)
T ss_pred HHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 2 11112222 22247899999999999999999999999999988875
No 23
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.26 E-value=0.27 Score=42.63 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=74.2
Q ss_pred CchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC----CCCCCchhhHHHHHHhhhhhHHHH
Q 016462 151 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDP----KFENNPYNGFVYTSFQERATFISH 226 (389)
Q Consensus 151 ~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~----~~~~~p~~~~vYtsfQE~AT~ish 226 (389)
.+.....|+..=..||..|.+.+..++..-|..-....... +..+|+.+ ....+....+-..--.|......|
T Consensus 36 ~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~ 112 (148)
T cd01052 36 EGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDW---YEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVY 112 (148)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH---HHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 46678889988899999999999999966555322222221 11122111 111233334444444677777778
Q ss_pred HhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 227 GNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 227 ~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
+++.++|.. +|++...++..|-+||..|...|..+
T Consensus 113 ~~~~~~a~~-~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 113 KELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888765 89999999999999999999998876
No 24
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=94.68 E-value=1.3 Score=45.34 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=71.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHH----------HHHHHHHH---HHc----CCCCCC---CCCchhh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ----------IEKSIQYL---IRS----GMDPKF---ENNPYNG 211 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~----------lE~~~~~l---i~~----G~d~~~---~~~p~~~ 211 (389)
.++...++..+.++|+.|+.+-...+-.-+. |+.. +.+-.+++ +.. +++..+ ..+.+..
T Consensus 127 ~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~-~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (369)
T PRK07209 127 NPECRQYLLRQAFEEAIHTHAYQYIVESLGL-DEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRN 205 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHH
Confidence 4667789999999999999987766633332 4432 11111111 111 111111 1123555
Q ss_pred HH-HHHHhhhhhHH----HHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 212 FV-YTSFQERATFI----SHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 212 ~v-YtsfQE~AT~i----sh~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
+| |.+|.|-.-+- +--++++ .--=|.++++...|++||.+|..|+..+++.+....|+
T Consensus 206 lva~~~ilEGi~FysgFa~~~~l~r---~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~ 268 (369)
T PRK07209 206 LIAFYCIMEGIFFYVGFTQILSLGR---QNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPH 268 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 65 35566754332 1123333 22247899999999999999999999999999887774
No 25
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.5 Score=43.91 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=81.4
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCC--hHHHHHHHHH-HHHcCCC---CCCCCCchhhHHHHHHhhhhhHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVD--MKQIEKSIQY-LIRSGMD---PKFENNPYNGFVYTSFQERATFIS 225 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvD--p~~lE~~~~~-li~~G~d---~~~~~~p~~~~vYtsfQE~AT~is 225 (389)
+..-..-+..=..||-+|-+.+.+.++--+.-+ -...+.+... .+..+.+ .....+....+-+..++|+.|-.+
T Consensus 52 ~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~ 131 (176)
T COG1633 52 DEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEF 131 (176)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 446677777888999999999999884322211 0111111211 2222333 222347788999999999999999
Q ss_pred HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 226 HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 226 h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
|--+.. ...++..+.+...||.||..|+..+....+.+..
T Consensus 132 Y~~~~~---~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 132 YEELLD---ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred HHHHHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998555 5789999999999999999999999999887654
No 26
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.68 E-value=0.76 Score=40.95 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=80.2
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 231 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 231 (389)
-.+++.|...=..||..|.+-|..|+.--|. .|. +. .+ . .+....+....|-+.--.|......|+.+.+
T Consensus 37 ~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg-~p~-~~-~i-----~--~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~ 106 (157)
T TIGR00754 37 LKELADHEYHESIDEMKHADEIIERILFLEG-LPN-LQ-DL-----G--KLRIGETVREMLEADLALELDVLNRLKEAIA 106 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCC-CC-cC-----C--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788877778999999999999966555 333 10 00 1 1112245566666666678888888888888
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 232 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 232 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
+|...+|+....++..|.+||..|..++...++.+-
T Consensus 107 ~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~~ 142 (157)
T TIGR00754 107 YAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELID 142 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999887643
No 27
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=94.68 E-value=0.78 Score=46.18 Aligned_cols=117 Identities=16% Similarity=0.025 Sum_probs=71.0
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHH----H---------HHHHHHHHcCCCCCCCCCchhhHHHHHHh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQI----E---------KSIQYLIRSGMDPKFENNPYNGFVYTSFQ 218 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~l----E---------~~~~~li~~G~d~~~~~~p~~~~vYtsfQ 218 (389)
.++...+...|.+.|+.|+..-.-.+-.-+ -|+... + +-.+++ ..-++ ...+++..++.-++.
T Consensus 97 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~-~~~~~~~~~f~~~~~~p~i~~K~~~~-~~~~~--~~~~~~~~lv~~~~l 172 (330)
T PTZ00211 97 VPEARCFYGFQIAMENIHSETYSLLIDTYI-TDEEEKDRLFHAIETIPAIKKKAEWA-AKWIN--SSNSFAERLVAFAAV 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCHHHHHHHHHH-HHHHh--cchHHHHHHHHHHHh
Confidence 456678999999999999987665442211 133321 1 111111 11122 123566777655667
Q ss_pred hhhhHHH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 219 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 219 E~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
|..-+.+ ...+--+++.--=|.++++...|++||.+|..|...++..+++.-|.
T Consensus 173 Egi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~ 227 (330)
T PTZ00211 173 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPR 227 (330)
T ss_pred hhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCH
Confidence 7543321 22222233222247789999999999999999999999999866554
No 28
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=94.42 E-value=0.083 Score=45.51 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=40.0
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
-|.-...+|+++++. ..||.+++++..||.+|.+|+.+|.++.+..
T Consensus 9 ~E~~~~~~Y~~la~~---~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 9 DEITEAAIYRKLAKR---EKDPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778899997664 6799999999999999999999999998764
No 29
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=94.15 E-value=1.3 Score=45.40 Aligned_cols=124 Identities=17% Similarity=0.072 Sum_probs=79.2
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHH-HHhcCCChH-----------HHHHHHHHHHHcCCCCCCCCCc--------hhh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYL-YLSGRVDMK-----------QIEKSIQYLIRSGMDPKFENNP--------YNG 211 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL-~lSgrvDp~-----------~lE~~~~~li~~G~d~~~~~~p--------~~~ 211 (389)
.+.-..|+..|..+|+=|+..-.--+ .+..--+.. .+-+ +..-|..-|+- .+++| +..
T Consensus 102 ~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~-k~~~i~~~y~~-~~~~~~~~~~~~~~~~ 179 (348)
T COG0208 102 TPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQE-KAEIILRYYDD-LGDDPDDPLEEFLLKL 179 (348)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHH-HHHHHHHHHHh-ccCCcccchHHHHHHH
Confidence 45668899999999999998644333 110000111 1111 11122222221 22455 788
Q ss_pred HHHHHHhhhhh----HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHH
Q 016462 212 FVYTSFQERAT----FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAG 280 (389)
Q Consensus 212 ~vYtsfQE~AT----~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~ 280 (389)
++|.++-|--- +.+.-++++.. -=|..++|.+.|.+||.+|-.++..++.+++...|+.--..+.+
T Consensus 180 ~v~~~~lEgi~FYsGFa~~~~l~~r~---kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~ 249 (348)
T COG0208 180 VVASVILEGILFYSGFAYPLYLARRG---KMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKD 249 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHH
Confidence 88888888532 44555655532 25789999999999999999999999999999999853333333
No 30
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=93.59 E-value=0.42 Score=42.91 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=85.9
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHH-hcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~l-SgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
.++++.|.+.=..||..|++.|-+|+.. -|.++...++.-. .....++...|-..-=.|.--...+..+.
T Consensus 36 l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~---------~~~~~~~~e~l~~al~~E~~vt~~~~~l~ 106 (161)
T cd01056 36 LPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE---------KDEWGSGLEALELALDLEKLVNQSLLDLH 106 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999944 4444555443221 01224777777777778887777788899
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHHhh
Q 016462 231 RLVKKHGDMKLAQICGT-IASDEKRHETAYTKIVEKLFEI 269 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~le~ 269 (389)
++|...+|++....+.. +=.++..|.+.+.+++..+-.+
T Consensus 107 ~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~ 146 (161)
T cd01056 107 KLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRV 146 (161)
T ss_pred HHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99998999999999997 9999999999999998875544
No 31
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.53 E-value=2.8 Score=42.28 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=65.8
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHH------------HHHHHHHHHHcCCCCCCCCCchhhHHHHHHhh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ------------IEKSIQYLIRSGMDPKFENNPYNGFVYTSFQE 219 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~------------lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE 219 (389)
.++-..+...|..+|+.|+.+-..-+-.-+. +.+. +.+- ...+..-++- .+.+..+++..+.|
T Consensus 87 ~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K-~~~i~~~~~~---~~~~~~~v~~~~lE 161 (322)
T PRK13967 87 TPHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRK-AQIIVDYYRG---DDALKRKASSVMLE 161 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHH-HHHHHHHhcC---CcHHHHHHHHHHHH
Confidence 4455789999999999999987666622121 2111 1111 1222333331 35566677777777
Q ss_pred hhhH-HHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 220 RATF-ISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 220 ~AT~-ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
-.-+ ++....--+++.--=|.++++...|++||..|-.+....+.+.+
T Consensus 162 gi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 162 SFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6431 11111112222222478999999999999999999998664444
No 32
>PF13668 Ferritin_2: Ferritin-like domain
Probab=93.40 E-value=1 Score=38.93 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=64.9
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVD--MKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 229 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvD--p~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt 229 (389)
++.....+..=...|..|-..|++-+. |.-. +..+. -.+++.. ++...+.....-|..-...|...
T Consensus 37 ~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~--------~~~~~~~--~~~~~L~~A~~~E~~~~~~Y~g~ 104 (137)
T PF13668_consen 37 DPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYD--------FPFDPFT--DDASFLRLAYTLEDVGVSAYKGA 104 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCccc--------cccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567778889999999999996 3221 11111 0334443 44433333334455555556664
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 230 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 230 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
+. ...+|.+++++..|++.|.+|...++.++.
T Consensus 105 ~~---~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 105 AP---QIEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 467999999999999999999999998764
No 33
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=92.92 E-value=0.59 Score=40.58 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=66.9
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH------hhCChhHHHHHHHHHhhccCCCCC
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF------EIDPDDTILALAGMMKKRFRMPGH 291 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l------e~dPd~tm~Aia~mm~~~i~MPa~ 291 (389)
-|......|...++.|+.-|-+.++..+..+|.+|..|..-|.+.+..+- ..+...+...|...+..
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~------- 84 (134)
T cd01041 12 GESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAG------- 84 (134)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHh-------
Confidence 35555667888889998899999999999999999999999888876531 12223444444444431
Q ss_pred CCCCCCcchhhhhHHHHHHHhCCCChhcHHH-HH
Q 016462 292 FMYDGQDDKIFDHFSAVTQRLGVYTGHDYAD-IL 324 (389)
Q Consensus 292 ~m~d~~~~~lf~~~s~vaqr~GvYt~~dy~d-Il 324 (389)
.-..-...|..+..+|.+.|-++..+... |+
T Consensus 85 --E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~ 116 (134)
T cd01041 85 --ETYEYTEMYPEFAEVAEEEGFKEAARSFEAIA 116 (134)
T ss_pred --hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00011246778888898999777777433 54
No 34
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=92.84 E-value=3.4 Score=41.92 Aligned_cols=105 Identities=8% Similarity=-0.051 Sum_probs=59.0
Q ss_pred HHHhhhchhHhhhHHHH----HHHHH--------HHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhH
Q 016462 156 ATWIRAWTAEENRHGDL----LNKYL--------YLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATF 223 (389)
Q Consensus 156 ~~Wv~~WTAEEnRHG~a----L~~YL--------~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ 223 (389)
..+...+.++|+-|+.+ +..++ +-+-.-+| .+.+-.+. +..-++ ..+++..+++..+.|-.-+
T Consensus 104 ~~~l~~q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~~~p-~l~~K~~~-i~~~~~---~~~~~~~~va~~~lEGi~F 178 (335)
T PRK13965 104 QVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTE-SLQRRARV-LIPYYT---GDDPLKSKVAAAMMPGFLL 178 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCH-HHHHHHHH-HHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 56779999999999994 44442 10001111 12222222 222233 1356777777777775433
Q ss_pred HH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 224 IS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 224 is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
-+ ...+--+++.--=|.++++...|.+||..|-.|-.-++..
T Consensus 179 ysgFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~ 221 (335)
T PRK13965 179 YGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQ 221 (335)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 1111223322234789999999999999999864444444
No 35
>PLN02492 ribonucleoside-diphosphate reductase
Probab=92.73 E-value=2.3 Score=42.71 Aligned_cols=116 Identities=16% Similarity=-0.009 Sum_probs=68.5
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHH-------------HHHHHHHHcCCCCCCCCCchhhHHHHHHh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE-------------KSIQYLIRSGMDPKFENNPYNGFVYTSFQ 218 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE-------------~~~~~li~~G~d~~~~~~p~~~~vYtsfQ 218 (389)
.++...+...+.+.|+-|+.+-...+..-+ -|+...+ +-.+++. ++.. ...+.+..++.-.+.
T Consensus 86 ~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~-~d~~~~~~~f~~~~~~p~l~~K~~~~~--~~~~-~~~~~~~~lva~~~l 161 (324)
T PLN02492 86 VPEARAFYGFQIAIENIHSEMYSLLLDTYI-KDPKEKDRLFNAIETIPCVAKKADWAL--RWID-SSASFAERLVAFACV 161 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCHHHHHHHHHHH--HHHh-hhHHHHHHHHHHHhh
Confidence 456678999999999999987665542211 1443211 1111111 1111 112455566544556
Q ss_pred hhhhHHH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016462 219 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 271 (389)
Q Consensus 219 E~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 271 (389)
|---+.+ +..+--+++.--=|.++++...|++||.+|..|...++..+.+.-+
T Consensus 162 Egi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~ 215 (324)
T PLN02492 162 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS 215 (324)
T ss_pred hHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 6533221 2222223222224789999999999999999999999998886444
No 36
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=92.01 E-value=0.38 Score=39.99 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=42.2
Q ss_pred HhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 217 FQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 217 fQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
-.|.....+|...++ ..++|.++.++..||.||.+|...+..++..+-
T Consensus 8 ~~E~~~~~~Y~~~a~---~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 8 KMEEEAAEFYLELAE---KAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHh---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468888888998655 578999999999999999999999999998865
No 37
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=91.44 E-value=7.9 Score=39.88 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=30.9
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh--hCCh
Q 016462 238 DMKLAQICGTIASDEKRHETAYTKIVEKLFE--IDPD 272 (389)
Q Consensus 238 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le--~dPd 272 (389)
=|.++++...|++||..|-.|...+++.+.. .+|+
T Consensus 225 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~~~e~p~ 261 (376)
T PRK09101 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPE 261 (376)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChh
Confidence 4678999999999999999999999999885 6665
No 38
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=91.37 E-value=9 Score=36.79 Aligned_cols=143 Identities=19% Similarity=0.133 Sum_probs=96.7
Q ss_pred HHHHHHhhhccCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHH-HHh---cCCCh--HH-HH--
Q 016462 119 VALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYL-YLS---GRVDM--KQ-IE-- 189 (389)
Q Consensus 119 v~Lv~~miTEd~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL-~lS---grvDp--~~-lE-- 189 (389)
..+..-...|-++-....++...-. .+.|..-.---+..|.||...+.-++ .++ ...+. ++ .+
T Consensus 77 ~~~~~~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~~~ 148 (233)
T PF02332_consen 77 RHLGPLRHAEYGAQMASAYIARFAP--------GTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWLND 148 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHHHS
T ss_pred HHcCCcchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHhhC
Confidence 3444445556666666665554432 45666666678889999999888776 332 22220 11 11
Q ss_pred ---HHHHHHHHcCCCCCCCCCchhhHHHHHHh-h-hhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 190 ---KSIQYLIRSGMDPKFENNPYNGFVYTSFQ-E-RATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 190 ---~~~~~li~~G~d~~~~~~p~~~~vYtsfQ-E-~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
.-...++..-+- ..|+...+++..++ | .-|.+.+..+.+.|...||..+..|+.-|-.||.||.+-=...|+
T Consensus 149 p~wq~~R~~vE~~~~---~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~al~~ 225 (233)
T PF02332_consen 149 PAWQPLRRLVEDLLV---TYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDALFK 225 (233)
T ss_dssp HHHHHHHHHHHHHTT---SSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011223332222 14778888887776 4 447788888899999999999999999999999999999999999
Q ss_pred HHHhhCCh
Q 016462 265 KLFEIDPD 272 (389)
Q Consensus 265 ~~le~dPd 272 (389)
-+++-+|+
T Consensus 226 ~~~~~~~~ 233 (233)
T PF02332_consen 226 MALEDDPN 233 (233)
T ss_dssp HHHCTTTH
T ss_pred HHHhCCCC
Confidence 88887764
No 39
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=91.26 E-value=1.2 Score=38.44 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCCC
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQ 297 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~~ 297 (389)
-|......|...++.|+.-|.|.+++....+|..|..|...|.+++.. -|..+...|..++.. -. ..
T Consensus 12 ~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~~~~~~~le~a~~~------E~---~~ 78 (123)
T cd01046 12 GETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VSEDTKENLEMMLEG------EA---GA 78 (123)
T ss_pred hHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHh------HH---HH
Confidence 455666778888889989999999999999999999999999997643 235666666666641 10 11
Q ss_pred cchhhhhHHHHHHHhCCCChhc
Q 016462 298 DDKIFDHFSAVTQRLGVYTGHD 319 (389)
Q Consensus 298 ~~~lf~~~s~vaqr~GvYt~~d 319 (389)
...|..+..+|.+-|-|+..+
T Consensus 79 -~~~~~~~~~~A~~egd~~~~~ 99 (123)
T cd01046 79 -NEGKKDAATEAKAEGLDEAHD 99 (123)
T ss_pred -HHhHHHHHHHHHHcCCHHHHH
Confidence 123677899999999777766
No 40
>PRK10304 ferritin; Provisional
Probab=91.03 E-value=3.7 Score=37.63 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=78.0
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgr-vDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
.+.++.|.+.=..||-.|+..|-+|+...|. +....++.- +....|+...|-..-=.|..-..++.++.
T Consensus 36 l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p----------~~~~~s~~e~~~~~l~~E~~vt~~i~~l~ 105 (165)
T PRK10304 36 FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESP----------FAEYSSLDELFQETYKHEQLITQKINELA 105 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999965443 333222210 11124666666666667888888889999
Q ss_pred HHHhhhCCHHHHHHHhHhhhh---hhHHHHHHHHHHHH
Q 016462 231 RLVKKHGDMKLAQICGTIASD---EKRHETAYTKIVEK 265 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~IAaD---E~RH~~~Y~~iv~~ 265 (389)
++|...+|++....+..+-.+ |..|....-+-++.
T Consensus 106 ~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~ 143 (165)
T PRK10304 106 HAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSL 143 (165)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 77777765555553
No 41
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=90.71 E-value=1.1 Score=35.41 Aligned_cols=50 Identities=28% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 215 TSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 215 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
...-|......|...+.. ..+|.+++++..++.||.+|...+.+++..+-
T Consensus 6 ~~~~E~~a~~~y~~~~~~---~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g 55 (130)
T cd00657 6 ALAGEYAAIIAYGQLAAR---APDPDLKDELLEIADEERRHADALAERLRELG 55 (130)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567777777775554 55999999999999999999999999997753
No 42
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=90.70 E-value=13 Score=37.53 Aligned_cols=115 Identities=11% Similarity=0.049 Sum_probs=70.9
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChH-------------HHHHHHHHHHHcCCCCCCCCCchhhHHHHHHh
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMK-------------QIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQ 218 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~-------------~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQ 218 (389)
.++-..+...|.++|+-|+.+-..-+-.-+ ++. .+.+-.+ .+..-++- .+++..+++-++.
T Consensus 89 ~pe~~~~~~~q~~~E~IHsesYs~il~tl~--~~~~~~~~f~~~~~~~~l~~K~~-~i~~~~~~---~~~~~~~va~~~l 162 (324)
T PRK13966 89 TPHEEAVLTNIAFMESVHAKSYSQIFSTLC--STAEIDDAFRWSEENRNLQRKAE-IVLQYYRG---DEPLKRKVASTLL 162 (324)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHhcCHHHHHHHH-HHHHHhcC---ChHHHHHHHHHHH
Confidence 345578899999999999987554442111 111 1222222 22223332 2467778888888
Q ss_pred hhhhHHH-HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 219 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 219 E~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
|..-+-| -...--+++.-.=+.++++...|++||..|-.|...++...+...|+
T Consensus 163 Egi~FysgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~ 217 (324)
T PRK13966 163 ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDD 217 (324)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCh
Confidence 8762222 11111122233457899999999999999999999999877665555
No 43
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=90.36 E-value=5.4 Score=39.27 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=45.0
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 016462 235 KHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMK 283 (389)
Q Consensus 235 ~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 283 (389)
..||...+.|+..|-.||..|-++=.+-++.+.+..+.+....+...++
T Consensus 177 ~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv~ 225 (253)
T PF04305_consen 177 SAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELVR 225 (253)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 4799999999999999999999999999999999888888888999985
No 44
>PRK13456 DNA protection protein DPS; Provisional
Probab=88.38 E-value=12 Score=35.40 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhhc-cCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcC---CChHHHHH
Q 016462 115 AEHFVALVGEMITE-EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGR---VDMKQIEK 190 (389)
Q Consensus 115 dd~~v~Lv~~miTE-d~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgr---vDp~~lE~ 190 (389)
+.++-.|.-++-+| .+.=-|...-..+.|+ ...+.+.++-.=..||.+|++.|..=++-=|. .||..+..
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ 92 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGL------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHD 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhh
Confidence 55666666666666 2222333333345554 44566778888788999999999966543233 35554433
Q ss_pred HHHHHHHcCC-CCCCCCCchhhHHHHH-HhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 191 SIQYLIRSGM-DPKFENNPYNGFVYTS-FQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 191 ~~~~li~~G~-d~~~~~~p~~~~vYts-fQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
+.++++ +++.+++=+..|+=.. .-|+.+=..|+.+-+.+. -.||+=..|.-.|=+||..|+.-|.++++
T Consensus 93 ----ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 93 ----ISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALAILQEEIEHEAWFSELLG 163 (186)
T ss_pred ----hhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666 3333221245555444 457888888998888776 34999999999999999999999888764
No 45
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=88.20 E-value=3.5 Score=38.31 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=57.9
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCCCcchhh
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIF 302 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf 302 (389)
..-|.-.++.|+.-|.|.++++...||-+|..|..-+.+++.++. .-...+..-+..++. |- .+.....|
T Consensus 20 ~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-~~~~~~~eNl~~aie------GE---~~e~~emy 89 (166)
T COG1592 20 VMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-LVLGDTRENLEEAIE------GE---TYEITEMY 89 (166)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHc------cc---hHHHHHhC
Confidence 334666777888899999999999999999999999999999877 233344455555553 11 12334556
Q ss_pred hhHHHHHHHhC
Q 016462 303 DHFSAVTQRLG 313 (389)
Q Consensus 303 ~~~s~vaqr~G 313 (389)
..|+.+++.-|
T Consensus 90 p~~ae~A~~~g 100 (166)
T COG1592 90 PVFAEVAEEEG 100 (166)
T ss_pred hHHHHHHHHcC
Confidence 66777787777
No 46
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=88.19 E-value=1.1 Score=39.70 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=37.7
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 271 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 271 (389)
-|.++...|-.-+... ..++|.+++++..||.||.+|...+.+++..+ .-+|
T Consensus 27 ~E~~ai~~Y~y~~~~~-~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~l-gg~p 78 (154)
T cd07908 27 SELTAISQYIYQHLIS-EEKYPEIAETFLGIAIVEMHHLEILGQLIVLL-GGDP 78 (154)
T ss_pred hHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 3555555554433333 34789999999999999999999999998773 3344
No 47
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=87.60 E-value=1.5 Score=43.07 Aligned_cols=159 Identities=16% Similarity=0.060 Sum_probs=97.1
Q ss_pred hchhHhhhHHHHHHHHHHHh-c-CCChHHHHHHHHHH---HHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhh
Q 016462 161 AWTAEENRHGDLLNKYLYLS-G-RVDMKQIEKSIQYL---IRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKK 235 (389)
Q Consensus 161 ~WTAEEnRHG~aL~~YL~lS-g-rvDp~~lE~~~~~l---i~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~ 235 (389)
+=..+|..|+..|-.|+--- | ..|.+.+.-.+..- -..-++.+. +|=...++...|.+++-.+.+..+..
T Consensus 54 ~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~~~~~rn~~l~e~p~-~dwa~~v~r~~l~d~~~~~~l~~l~~---- 128 (263)
T PF05138_consen 54 NIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRDAREFRNLLLFEQPN-GDWADTVARQFLFDRAGKVLLEALAD---- 128 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHHTTCS-SSGGGGS----SHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcccchhhhhhhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 44678999999999999332 3 23666655443210 000111111 35567888888999999888877533
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh---hCChhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhHHHHHHHh
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE---IDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRL 312 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le---~dPd~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf~~~s~vaqr~ 312 (389)
+.++.|++++.+|-++|.-|..+-.+.+.++-. .....+..||..+..-...| +.++ +. ...+...
T Consensus 129 ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~gt~es~~r~q~Al~~~wp~~~el---F~~~--~~------~~~l~~~ 197 (263)
T PF05138_consen 129 SSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGDGTEESRERMQAALDRLWPYTLEL---FGPD--DS------EEALAWG 197 (263)
T ss_dssp -SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHC---C-S---HC------HHHHHCT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---cCCC--ch------HHHHHHC
Confidence 779999999999999999999999999999983 44455666777666421111 1111 11 1223333
Q ss_pred CCCChh-----cHHHHHHHHHhcccccc
Q 016462 313 GVYTGH-----DYADILEFLIERWKVEK 335 (389)
Q Consensus 313 GvYt~~-----dy~dIl~~ll~~W~v~~ 335 (389)
|+-... .+.+.+.+++...++.-
T Consensus 198 ~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 198 GRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp TSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 433222 26667888888887653
No 48
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=87.49 E-value=7.6 Score=33.55 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=81.6
Q ss_pred cCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCC--CCCchhhHHHHHHhhhhhHHH
Q 016462 148 TGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKF--ENNPYNGFVYTSFQERATFIS 225 (389)
Q Consensus 148 ~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~--~~~p~~~~vYtsfQE~AT~is 225 (389)
.|.+...+...+...-.||..|.+.|..-+..-|..-....+....+. ...+.. ..+.-..+-...--|..+...
T Consensus 25 ~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s---~l~~~~~~~~~~~~~l~~~~~~~~~~i~~ 101 (139)
T cd01043 25 KGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELS---TIKEEPAGVLSAKEMVAELLEDYETLIEE 101 (139)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999776765444444443322 222211 124455666666777788888
Q ss_pred HHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHH
Q 016462 226 HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTK 261 (389)
Q Consensus 226 h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~ 261 (389)
++...++|...+|++.+.++..|-+++..|--+...
T Consensus 102 ~~~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 102 LREAIELADEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888789999999999999999988776654
No 49
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=85.70 E-value=2.7 Score=39.12 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=50.0
Q ss_pred CchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016462 207 NPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 270 (389)
Q Consensus 207 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 270 (389)
+....+.+.---|..---+|..+++. ..|+.+++++..||.||.+|..-|.+++.+....+
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~---~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER---IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44566777777888888889996664 67999999999999999999999999988765444
No 50
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=85.28 E-value=4 Score=35.06 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=56.9
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARL 232 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarl 232 (389)
+.-..-...=..+|-+|...+++++---|..-+..-.+..-+.+-..+. ++...+-..--.|..+-.+|..++..
T Consensus 27 ~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~l~~~~~~E~~ai~~Y~~~~~~ 101 (125)
T cd01044 27 PENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARIF-----GPTFVLKLLERGEERAIEKYDRLLEE 101 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHH-----hHHHHHHHHHHhHHhhHhhHHhhhhh
Confidence 3445556666778999999999998543332111111111111111110 11111111223688888899886653
Q ss_pred HhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 233 VKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 233 a~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
..++.+|+.||..|+.-+.++.+
T Consensus 102 ---------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 102 ---------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 55778899999999998887654
No 51
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=84.42 E-value=1.9 Score=43.94 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
++-|.-++|-.+ ..+|+|+++.+..|+||+||..|--+-++
T Consensus 89 flLYKEl~rrlk-~~~P~lae~F~~MaRDEARHAGFlNkam~ 129 (337)
T TIGR02029 89 FLLYKELSRRLK-NRDPVVAELFQLMARDEARHAGFLNKALG 129 (337)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 445555555443 36999999999999999999999887776
No 52
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=82.52 E-value=9.1 Score=34.45 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=78.5
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLS-GRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lS-grvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
-++++.|.+.=..||-.|+..|-+|+.-- |++....++... .....++...|-..--.|..-..+..++.
T Consensus 36 l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~---------~~~~~~~~e~~e~al~~Ek~v~~~i~~l~ 106 (160)
T cd00904 36 LKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP---------SDEWGGTLDAMEAALKLEKFVNQALLDLH 106 (160)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc---------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999543 444444333211 10113666667666667877777888899
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHH
Q 016462 231 RLVKKHGDMKLAQICGT-IASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~l 267 (389)
++|...+|++....+.. .-.+-..-.+-+.+++..+-
T Consensus 107 ~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~ 144 (160)
T cd00904 107 ELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLE 144 (160)
T ss_pred HHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Confidence 99988999999999887 77777777777777776543
No 53
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=81.92 E-value=13 Score=32.62 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=62.7
Q ss_pred hhHhhhHHHHHHHHHHHhcCCChHH---HHHH----HHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhh
Q 016462 163 TAEENRHGDLLNKYLYLSGRVDMKQ---IEKS----IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKK 235 (389)
Q Consensus 163 TAEEnRHG~aL~~YL~lSgrvDp~~---lE~~----~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~ 235 (389)
..+|.+|-+.|..-+---+--+|.. ...+ ...++..|. .+....+-...-.|...--+|..+++ .
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~-----~s~~~al~~g~~~E~~~i~~ye~~~~---~ 107 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGP-----KSLQDALEVGVLIEELDIADYDRLLE---R 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 4789999999998884333222221 0000 011111222 24566777777889999999998555 6
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKI 262 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~i 262 (389)
+.||.+++++.+++.-|..|+..|.+-
T Consensus 108 ~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 108 TQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999988763
No 54
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.35 E-value=2.8 Score=42.89 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
++-|.-++|-.+ ..+|+|+++.+..|+||+||..|--+.++
T Consensus 95 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (351)
T CHL00185 95 FLLYKELSRKLK-DKNPLLAEGFLLMSRDEARHAGFLNKAMS 135 (351)
T ss_pred hHHHHHHHHHhc-cCCcHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 445566555443 23799999999999999999999877776
No 55
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=81.17 E-value=2.8 Score=42.52 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
++-|.-++|-.+. .+|+|+++.+..|+||+||..|--+-++
T Consensus 79 flLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~ 119 (323)
T cd01047 79 FLLYKELGRRLKN-TNPVVAELFRLMARDEARHAGFLNKALS 119 (323)
T ss_pred HHHHHHHHHHccc-CCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 4556666664432 2699999999999999999999887776
No 56
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=80.76 E-value=24 Score=37.75 Aligned_cols=115 Identities=21% Similarity=0.176 Sum_probs=73.0
Q ss_pred hHHHHhhhchhHhhhHHHHHHHHH-HHhc---CCChHH--H-H----HHHHHHHHcCCCCCCCCCchhhHHHHHHh-hh-
Q 016462 154 SWATWIRAWTAEENRHGDLLNKYL-YLSG---RVDMKQ--I-E----KSIQYLIRSGMDPKFENNPYNGFVYTSFQ-ER- 220 (389)
Q Consensus 154 ~W~~Wv~~WTAEEnRHG~aL~~YL-~lSg---rvDp~~--l-E----~~~~~li~~G~d~~~~~~p~~~~vYtsfQ-E~- 220 (389)
.+....---+.-|.||+...--|. +++. .+|-.+ . + ......+...|- -.|+...+++..|+ |.
T Consensus 108 ~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~~R~~~ed~~~---t~D~~E~~valnlvfE~~ 184 (465)
T cd01057 108 ELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGAAKRFFFDGFI---TGDAVEAALALQFVFETA 184 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHHHHHHHHHHHh---cCCHHHHHHHHHhhHHHh
Confidence 456666667778888887655444 2222 222221 0 0 001112222221 13666666665544 33
Q ss_pred hhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 221 ATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 221 AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
-|...-..+++.|...||..+..|..-|-+||.||.+-=...| .++..||+
T Consensus 185 ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll-~~l~~Dp~ 235 (465)
T cd01057 185 FTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGYPTL-VLLENDPD 235 (465)
T ss_pred hhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHH-HHHHcCcc
Confidence 4566566677788889999999999999999999999999999 88888985
No 57
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=80.70 E-value=2.9 Score=42.90 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
++-|.-++|-.+ ..+|.|+++.+..|+||+||..|--+.++
T Consensus 99 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 139 (355)
T PRK13654 99 FLLYKELSRRLK-DRNPLLAELFQLMARDEARHAGFLNKAMK 139 (355)
T ss_pred HHHHHHHHHhcc-ccCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 445555555433 23899999999999999999999888776
No 58
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=79.89 E-value=2.7 Score=43.02 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 223 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 223 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
++-|..++|-.+ ..+|.|+++.+..|+||+||..|--+.++
T Consensus 95 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (357)
T PLN02508 95 FLLYKELGRRLK-KTNPVVAEIFTLMSRDEARHAGFLNKALS 135 (357)
T ss_pred chHHHHHHHhcc-cCChHHHHHHHHhCchhHHHHhHHHHHHH
Confidence 445666666433 24799999999999999999999888777
No 59
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=79.25 E-value=17 Score=34.41 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=72.5
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHHHHhcC----CChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHh
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYLYLSGR----VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGN 228 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgr----vDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n 228 (389)
.++..=+..=.-||-+|=.-..+-+.--|. ..+...-.....++..| +| .--+..++..++.| +=||-.
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~-~p---~~llD~Llv~alIE---ARScER 120 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKG-EP---ERLLDRLLVAALIE---ARSCER 120 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccC-Ch---HHHHHHHHHHHHHH---HHhHHH
Confidence 344444455667888887666666544332 11111111122222222 11 22356778788887 457888
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 229 TARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 229 tarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
.+.+|....|+.|++....+..-|+|||.-|-++-..+++
T Consensus 121 F~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 121 FALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 8889887789999999999999999999999999999986
No 60
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=78.26 E-value=30 Score=40.22 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhccCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHH-HH
Q 016462 115 AEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS-IQ 193 (389)
Q Consensus 115 dd~~v~Lv~~miTEd~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~-~~ 193 (389)
.-..-+|..++-.|...=.|-+.++.--. +..-......=..||.+|-+.|.+.+-- ..|..-+.+ ..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~--------~~~~K~lF~~LA~eE~~H~~~l~~~~~~---~~~~~~~~~~~~ 927 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS--------DPVLKELFLKFAGMEQEHMATLARRYHA---AAPSPTEGFKIE 927 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCcccccccc
Confidence 45566777788888777777666665442 5667778888889999999998777621 111111111 00
Q ss_pred -HHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016462 194 -YLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDM-KLAQICGTIASDEKRHETAYTKIVEKLFEIDP 271 (389)
Q Consensus 194 -~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDP-vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 271 (389)
.....++... ..++...+-...-.|..+-.+|..+++ .+.|+ ..++|+..||.-|+.|.....+.++++-+-.|
T Consensus 928 ~~~~~~~~~~~-~~~~~~al~lAm~~Ekdai~fY~~la~---~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~~~~ 1003 (1006)
T PRK12775 928 RAAIMAGVKGR-PDDPGNLFRIAIEFERRAVKFFKERVA---ETPDGSVERQLYKELAAEEREHVALLTTEFERWKQGKP 1003 (1006)
T ss_pred hhhhhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHh---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0110122111 235677777888899999999999666 57788 58999999999999999999999988765443
No 61
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=74.35 E-value=36 Score=34.16 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=77.5
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHH-HHhcCC-ChH---------------HHHHHHHHHHHcCCCCCCCCCchhhHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYL-YLSGRV-DMK---------------QIEKSIQYLIRSGMDPKFENNPYNGFVYT 215 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL-~lSgrv-Dp~---------------~lE~~~~~li~~G~d~~~~~~p~~~~vYt 215 (389)
+.+....---+.-|.||+.-+-.|. ++++.. ++. -+.+.+..++.. .|+...++..
T Consensus 129 ~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~Wq~~R~~~E~~~~~-------~Dw~E~~va~ 201 (304)
T cd01058 129 TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVT-------YDWGEAFVAQ 201 (304)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchhHHHHHHHHHHHhh-------ccHHHHHHHH
Confidence 4556666667788888888887666 555442 220 011222222111 3566666665
Q ss_pred HHh--hhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh
Q 016462 216 SFQ--ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 272 (389)
Q Consensus 216 sfQ--E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 272 (389)
.|+ =.-|...+..+.+.|...||..+..|..-+-.||.||.+-=..+|+-+++-+|+
T Consensus 202 nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~alvk~l~~~~~~ 260 (304)
T cd01058 202 NLVFDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH 260 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccChh
Confidence 553 335677777788888889999999999999999999999999999977776565
No 62
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=73.84 E-value=5.5 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.662 Sum_probs=22.6
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYL 177 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL 177 (389)
-|..+|...|--.|||||+...--+
T Consensus 185 ~PIF~~Fe~WCqDEnRHGd~F~~lm 209 (337)
T TIGR02029 185 YPIFKYFESWCQDENRHGDAFAALM 209 (337)
T ss_pred chHHHHHHHHhcccchhHHHHHHHH
Confidence 5788999999999999999988766
No 63
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=71.88 E-value=4.7 Score=40.90 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=33.3
Q ss_pred hHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHH
Q 016462 133 TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE 189 (389)
Q Consensus 133 tY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE 189 (389)
+|-++|.-+-......--..-|..+|...|--.|||||+...--+ +.+|.-+.
T Consensus 155 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~ 207 (323)
T cd01047 155 GYWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALL----RAQPHLLN 207 (323)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHH----hcChhhhh
Confidence 344555533332222222235788999999999999999988766 23565433
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=71.61 E-value=6.1 Score=45.73 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=44.0
Q ss_pred hhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 210 NGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 210 ~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
..+-+..--|.....||..+++ ..++|.+++|...+|..|..|+..+.++++.
T Consensus 863 eil~~Ai~mE~~g~~FY~~~A~---~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 863 EAIRTAFEIELGGMAFYARAAK---ETSDPVLKELFLKFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445569999999998555 6789999999999999999999999888764
No 65
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=69.06 E-value=6.2 Score=40.53 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=22.5
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYL 177 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL 177 (389)
-|..+|...|--.|||||+...--+
T Consensus 191 ~PIFk~Fe~WCqDEnRHGd~Fa~lm 215 (357)
T PLN02508 191 YPIFKYFENWCQDENRHGDFFSALL 215 (357)
T ss_pred chHHHHHHHHhcccchhHHHHHHHH
Confidence 4788999999999999999987766
No 66
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=68.11 E-value=7.6 Score=39.87 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.5
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYL 177 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL 177 (389)
-|..+|...|--.|||||+...--+
T Consensus 191 ~PIF~~FE~WCqDEnRHGdfF~alm 215 (351)
T CHL00185 191 YPIFKFFESWCQDENRHGDFFAALL 215 (351)
T ss_pred chHHHHHHHHhcccchhHHHHHHHH
Confidence 4788999999999999999988766
No 67
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=64.30 E-value=86 Score=30.69 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=76.4
Q ss_pred chhHhhhHHHHHHHHHHHhcCCChHHHHHHH---HHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCC
Q 016462 162 WTAEENRHGDLLNKYLYLSGRVDMKQIEKSI---QYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGD 238 (389)
Q Consensus 162 WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~---~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gD 238 (389)
=.-+|.-|+..|-+|+---+..|.+.|.-.+ .+.-..=++.+. +|=...++-..|...+..+.+..+.. +.+
T Consensus 31 ialD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~-gdwa~tv~r~~l~d~~~~~~l~~L~~----ss~ 105 (237)
T TIGR02158 31 IALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPN-GDFALTIARQFLYDAYKVLLLEALTQ----SRD 105 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh----CCc
Confidence 3457888999999999333334777655222 111000112221 34455666666777777776655333 779
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHh
Q 016462 239 MKLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DDTILALAGMMK 283 (389)
Q Consensus 239 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP---d~tm~Aia~mm~ 283 (389)
+.|+.|+.+|-+.|..|..+=.+.+.++-+-.. ..+-.|+..+..
T Consensus 106 ~pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt~es~~r~Q~Ald~~wp 153 (237)
T TIGR02158 106 VPLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWP 153 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875433 345556666554
No 68
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=64.12 E-value=16 Score=35.56 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=53.5
Q ss_pred hhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCH
Q 016462 160 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDM 239 (389)
Q Consensus 160 ~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDP 239 (389)
..|++||.-=+.=+.+|--+ ++.+-. .+. ..+.+-++-|..-.... +..+......|
T Consensus 29 ~fW~peEi~~~~D~~~~~~L----s~~e~~-----~~~------------~~l~~~~~~D~~v~~~l--~~~i~~~~~~~ 85 (281)
T PF00268_consen 29 NFWTPEEIDMSKDIKDWKKL----SEEERE-----AYK------------RILAFFAQLDSLVSENL--LPNIMPEITSP 85 (281)
T ss_dssp T---GGGS-GGGHHHHHHHS-----HHHHH-----HHH------------HHHHHHHHHHHHHHHHH--HHHHHHHCSSH
T ss_pred CCCCchhcChhhhHHHHHhC----CHHHHH-----HHH------------HHHHHHHHHHhHHHhhH--HHHHHHHcCHH
Confidence 48999998777777777643 222211 111 12223333332222211 13455567899
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChh
Q 016462 240 KLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 273 (389)
Q Consensus 240 vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 273 (389)
-++.+++..+..|+.|..+|..+++.+. .++.+
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~ 118 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKE 118 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 9999999999999999999999999987 44443
No 69
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=64.10 E-value=14 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=38.8
Q ss_pred hHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 211 GFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 211 ~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
.+.|.-=-|.-..-+|..+++ .+| +.++...||..|.+|+.+..+++++
T Consensus 4 ~L~~Ale~Ek~a~~~Y~~~~~---k~~---~~~~F~~la~~E~~H~~~l~~L~~~ 52 (135)
T cd01048 4 ALLYALEEEKLARDVYLALYE---KFG---GLRPFSNIAESEQRHMDALKTLLER 52 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhc---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455555668888889998666 454 7899999999999999988777765
No 70
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=61.23 E-value=4.6 Score=41.51 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=22.5
Q ss_pred hhHHHHhhhchhHhhhHHHHHHHHH
Q 016462 153 TSWATWIRAWTAEENRHGDLLNKYL 177 (389)
Q Consensus 153 ~~W~~Wv~~WTAEEnRHG~aL~~YL 177 (389)
-|..+|...|--.|||||+...--+
T Consensus 195 ~PIF~~Fe~WCqDEnRHGd~F~~lm 219 (355)
T PRK13654 195 HPIFKFFENWCQDENRHGDFFALLM 219 (355)
T ss_pred CchHHHHHHHhcccchhHHHHHHHH
Confidence 4788999999999999999988766
No 71
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=60.72 E-value=22 Score=31.13 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=40.8
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
.|.....-|...+..++..|-|.++..+..+|.+|..|...+.+++..
T Consensus 14 ~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~ 61 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLND 61 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666778888888878899999999999999999999988887753
No 72
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=60.02 E-value=18 Score=34.12 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=80.3
Q ss_pred hhchhHhhhHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHh
Q 016462 160 RAWTAEENRHGDLLNKYLYLSGRVDMK-----QIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVK 234 (389)
Q Consensus 160 ~~WTAEEnRHG~aL~~YL~lSgrvDp~-----~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~ 234 (389)
..-.-||.+|=...+..|-- |.+--. ...+-...+++ .-+|. .-...++-+++-| +-||.+.|.+|-
T Consensus 65 ~~larEEL~HFeqV~eilq~-RnI~~~~i~asrYa~~l~~~~r-t~EPq---rliD~Livga~IE---ARScERfa~Lap 136 (203)
T COG4445 65 VLLAREELHHFEQVLEILQA-RNIPYVPIPASRYAKGLLAAVR-THEPQ---RLIDKLIVGAYIE---ARSCERFAALAP 136 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCccccCCccHHHHHHHHHHH-hcCcH---HHHHHHHHHHHHh---hhhHHHHHhhcc
Confidence 34556888888877777743 222211 11111111111 11221 2345777777777 457888888887
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh-CChhHHHHHHHHHhhccCCC
Q 016462 235 KHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI-DPDDTILALAGMMKKRFRMP 289 (389)
Q Consensus 235 ~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~-dPd~tm~Aia~mm~~~i~MP 289 (389)
.+ |..|++...-+-+-|+|||.-|..+-..+++. |=.+.+.-|+.+=..-|.-|
T Consensus 137 hl-deelakFY~gLl~SEaRHfqdYl~LA~qy~d~~dvs~rv~~~~~vEaeLi~sp 191 (203)
T COG4445 137 HL-DEELAKFYKGLLRSEARHFQDYLVLADQYFDEEDVSQRVDYFGIVEAELISSP 191 (203)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 56 55999999999999999999999999999988 77788887777655445444
No 73
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.46 E-value=91 Score=31.01 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=50.1
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhH
Q 016462 229 TARLVKKHGDMKLAQICGTIASDEKRHET---AYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHF 305 (389)
Q Consensus 229 tarla~~~gDPvLa~I~~~IAaDE~RH~~---~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf~~~ 305 (389)
.+|++. .||-.-..|+..|=.||.-|-+ -+++++-+=-.+|| +.-|...+++.+.-| +-+. |
T Consensus 180 ~aK~~~-~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp---~~~FreL~r~y~~~~--lkg~---------~ 244 (268)
T COG2833 180 RAKLAE-TGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDP---AATFRELVRAYFRFI--LKGP---------F 244 (268)
T ss_pred HHHHHH-cCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCCh---HHHHHHHHHHhCCcc--cCCc---------c
Confidence 355653 7888889999999999999965 34444444444555 666777776443322 1111 2
Q ss_pred HHHHH-HhCCCChhcHHHHH
Q 016462 306 SAVTQ-RLGVYTGHDYADIL 324 (389)
Q Consensus 306 s~vaq-r~GvYt~~dy~dIl 324 (389)
...|. ++| +|+..|+.|-
T Consensus 245 N~~AR~~AG-fT~~e~d~i~ 263 (268)
T COG2833 245 NIDARAKAG-FTQSEYDSIE 263 (268)
T ss_pred cHHHHHHcC-CCHHHHHHHH
Confidence 23333 666 8887777654
No 74
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=54.21 E-value=33 Score=29.76 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=37.8
Q ss_pred hhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 219 ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 219 E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
|.....-|.+.+..++..+-|.++..+..+|.||..|..-+.+.+..
T Consensus 17 E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 17 ELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777788999999999999999999888777754
No 75
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=53.55 E-value=1.2e+02 Score=30.71 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=76.8
Q ss_pred HHHhhhchhHhhhHHHHHHHHH-HHhcCCChHHHHHHH---------------HHHHHcCCCCCCC--------------
Q 016462 156 ATWIRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSI---------------QYLIRSGMDPKFE-------------- 205 (389)
Q Consensus 156 ~~Wv~~WTAEEnRHG~aL~~YL-~lSgrvDp~~lE~~~---------------~~li~~G~d~~~~-------------- 205 (389)
..-+..=+.||--|=..|..=+ .+.+.......+..- ++.+..|.-+...
T Consensus 56 kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~ 135 (283)
T PF05067_consen 56 KDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQA 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhh
Confidence 4556667789999988888876 444555444444331 3455555544331
Q ss_pred -CCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016462 206 -NNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 270 (389)
Q Consensus 206 -~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 270 (389)
+|++.-|..-..-|...++-|.++=+ -++||..+.+|+-+-+=|.-|...|.+-++.+=+..
T Consensus 136 sGdl~aDL~~NiaAE~~AR~~yerL~~---mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 136 SGDLIADLRSNIAAEQRARLQYERLYE---MTDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHT---T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35667777777788888888888555 488999999999999999999999999888776665
No 76
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=52.26 E-value=27 Score=32.51 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=34.8
Q ss_pred hHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 228 NTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 228 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
..+..|+..|+...+.-+..++.||++|...|+..++.+.+
T Consensus 91 ~~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 91 VFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34556667888999999999999999999999999988754
No 77
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=48.58 E-value=38 Score=31.40 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=31.2
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChh
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 273 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 273 (389)
.++|.++..+..++..|.+|...|.+.+.+ +..-|.-
T Consensus 26 ~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~-~~~rps~ 62 (165)
T cd01042 26 ARDPAVRPLIKEMLDEEKDHLAWFEELLPE-LGVRPSL 62 (165)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCch
Confidence 568999999999999999999999999965 4445543
No 78
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=48.48 E-value=43 Score=32.16 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=46.3
Q ss_pred hhhHHHHHhHHHHHhhhCCHHHHHHHhHhhh--------------hhhHH--HHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 016462 220 RATFISHGNTARLVKKHGDMKLAQICGTIAS--------------DEKRH--ETAYTKIVEKLFEIDPDDTILALAGMMK 283 (389)
Q Consensus 220 ~AT~ish~ntarla~~~gDPvLa~I~~~IAa--------------DE~RH--~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 283 (389)
.+-.-||..+++ .+++|+|..+++.|.. ..... ...+..|++++..-||+.+-.|+...+.
T Consensus 149 ~aD~~FH~aIa~---as~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~am~~hl~ 225 (241)
T COG2186 149 EADLAFHLAIAE---ASGNPVLLLLLEALWDLLRRSVRASTLAALARDETVVLEEHRAIVDAIAAGDPDAAREAMRAHLE 225 (241)
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHhhchhhcccccchhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455778999666 5889999999886540 11122 5778889999999999999888888775
No 79
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=48.46 E-value=73 Score=32.23 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=67.4
Q ss_pred CchhhHHHHHHhhhhhHHHHHhHHHHHhhhCC----HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 016462 207 NPYNGFVYTSFQERATFISHGNTARLVKKHGD----MKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMM 282 (389)
Q Consensus 207 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gD----PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 282 (389)
+-...++..++.|-+.-.||++++++- -.| +...+-.++=.+.|+||-.+-.+++-..=.+||...-......+
T Consensus 59 ~~~~~l~~~~itEd~LP~Y~~~L~~~f--~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~ 136 (297)
T cd01050 59 DARVALVGNLLTEEALPTYHSMLNRLF--GLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLI 136 (297)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHc--CcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345688889999999999999988862 134 88999999999999999999988887777789988877777777
Q ss_pred hhccCCCC
Q 016462 283 KKRFRMPG 290 (389)
Q Consensus 283 ~~~i~MPa 290 (389)
+++|.+|.
T Consensus 137 ~~G~~~~~ 144 (297)
T cd01050 137 GSGFDPGT 144 (297)
T ss_pred hCCCCCCC
Confidence 77777653
No 80
>PRK15022 ferritin-like protein; Provisional
Probab=48.22 E-value=2.3e+02 Score=26.29 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=71.6
Q ss_pred chhHHHHhhhchhHhhhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHH
Q 016462 152 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 230 (389)
Q Consensus 152 ~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgr-vDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 230 (389)
.++++.|.+.=..||--|+.-|-+|+.-.|. |--..+..- +...+++...|-.+-=+|+.-.-+-.++.
T Consensus 36 L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P----------~~~~~s~~e~fe~al~hEk~vt~~I~~L~ 105 (167)
T PRK15022 36 LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVP----------GEKLNSLEELFQKTLEEYEQRSSTLAQLA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999955443 332222211 11124777778777778888888889999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 231 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 231 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
++|...+|+.....+.--=....-=++-+.+++++
T Consensus 106 ~~A~~~~D~~t~~FL~wfv~EQ~eEe~~~~~ild~ 140 (167)
T PRK15022 106 DEAKALNDDSTLNFLRDLEKEQQHDGLLLQTILDE 140 (167)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777664333322222344444444
No 81
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=47.70 E-value=3.1e+02 Score=27.71 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=88.6
Q ss_pred hhHhhhHHHHHHHHHHHhcCCChHHHH---HH-HHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCC
Q 016462 163 TAEENRHGDLLNKYLYLSGRVDMKQIE---KS-IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGD 238 (389)
Q Consensus 163 TAEEnRHG~aL~~YL~lSgrvDp~~lE---~~-~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gD 238 (389)
.-+|.-||..|-.|+---|.-+.+.+. +. ..+. +=|+.+. .|-....+-..|...+-.+.+.. |.+ +.+
T Consensus 63 aqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~~f~--nl~e~P~-~dwA~tivr~~l~D~~~~~~~~~---L~~-SSy 135 (289)
T TIGR02156 63 VQDEAGHGLYLYAAAETLGVSREELLDALLTGKAKYS--SIFNYPT-LTWADIGVIGWLVDGAAIMNQTP---LCR-CSY 135 (289)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChHhhc--cchhCCC-CCHHHHHHHHHHHHHHHHHHHHH---Hhc-CCc
Confidence 457788999999999222543333222 11 1221 2233322 23334444444555555444444 433 779
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhHHHHHHHhCCC
Q 016462 239 MKLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVY 315 (389)
Q Consensus 239 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP---d~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf~~~s~vaqr~GvY 315 (389)
+.|+.|+.+|-+.|.-|..+=.+.|.++-+-.+ ..+-.||..+..-...| +.++..+. ..++.+.+-||-
T Consensus 136 ~plA~ia~Ki~KEe~yH~rh~~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~~em---Fg~~d~e~----~~~~~~~~~Gi~ 208 (289)
T TIGR02156 136 GPYSRAMVRICKEESFHQRQGYEIMLTLARGTQEQRQMAQDALNRWWWPSLMM---FGPHDADS----PNSGQSTKWKIK 208 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh---cCCCchhh----hhHHHHHhCCCC
Confidence 999999999999999999999999999875332 23555665555411111 11222211 124444566766
Q ss_pred --Chhc----HHHHHHHHHhcccc
Q 016462 316 --TGHD----YADILEFLIERWKV 333 (389)
Q Consensus 316 --t~~d----y~dIl~~ll~~W~v 333 (389)
+..+ +.+.+.+++.+-++
T Consensus 209 ~~~n~eLR~~w~~~v~~~l~~agL 232 (289)
T TIGR02156 209 RNSNDELRQKFIDATVPQLESLGL 232 (289)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3433 56677777766554
No 82
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=46.70 E-value=45 Score=27.70 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 225 SHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 225 sh~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
-|.++|+=|...||+||++=|- .|.-.|.+|+...-
T Consensus 41 KY~~LArDA~ssGDrV~aEny~-------QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 41 KYNQLARDAQSSGDRVLAENYL-------QHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3888898888899999998886 79999999987643
No 83
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=46.63 E-value=99 Score=32.89 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=67.3
Q ss_pred hhhchhHhhhHHHHHHHHH-HHhcCCChHHHHHHHHHHHHc--------CCCCCCCCCchhhHHHHHHhhhhhHHHHHhH
Q 016462 159 IRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSIQYLIRS--------GMDPKFENNPYNGFVYTSFQERATFISHGNT 229 (389)
Q Consensus 159 v~~WTAEEnRHG~aL~~YL-~lSgrvDp~~lE~~~~~li~~--------G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt 229 (389)
+-+=..||.||+=++-.-| ---|+-.-++-|+......+. -|...+ ++=+..|++|+|--+.-..--.
T Consensus 142 lfqvnvEEgRHlWaMvyLL~k~FG~dGreeAe~LL~rrsGd~d~PRiL~AFN~~t-~dWlsffmFT~ftDRdGk~QL~-- 218 (471)
T TIGR03225 142 LFQVNVEEGRHLWAMVYLLHKYFGRDGREEAEALLRRRSGDADNPRILGAFNEKT-PDWLSFFMFTYFTDRDGKMQLA-- 218 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHhhcCCCCCcchhhhccCCC-ccHHHHhHhheeecccchhhHH--
Confidence 3356789999997765444 223554544444433222221 222222 3447899999999988766433
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016462 230 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 269 (389)
Q Consensus 230 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 269 (389)
.+++ ++=--|+++|.-.-..|+.|..+=..-|+++++.
T Consensus 219 -alae-S~FdPLaRt~rfMltEEahHmfvGetGv~rviqr 256 (471)
T TIGR03225 219 -ALAE-SGFDPLSRTCRFMLTEEAHHMFVGESGVGRVIER 256 (471)
T ss_pred -HHHh-cCCchHhhhhHHHhhhhHhHhhhhhHHHHHHHHH
Confidence 3443 4433489999999999999999888777766554
No 84
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=42.82 E-value=26 Score=35.01 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=51.5
Q ss_pred CHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhHHHHHHHhCCC
Q 016462 238 DMKL--AQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVY 315 (389)
Q Consensus 238 DPvL--a~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf~~~s~vaqr~GvY 315 (389)
-|.| +-++.+|..||..|-..|+.+.+.+.-..+.+.+....+-- .|-+. ..- |
T Consensus 45 AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~------------------~k~n~-~~n-----~ 100 (265)
T COG3396 45 APTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGR------------------HKRNS-LFN-----L 100 (265)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhH------------------HHHHH-HHc-----C
Confidence 4666 55788999999999999999999987666545444433211 11111 222 2
Q ss_pred ChhcHHH--HHHHHHhccccccccCC
Q 016462 316 TGHDYAD--ILEFLIERWKVEKLIGL 339 (389)
Q Consensus 316 t~~dy~d--Il~~ll~~W~v~~~~gL 339 (389)
---+|+| |..+|++.|++..++.|
T Consensus 101 P~~~Wadt~~~~fLvD~~~~~~l~~l 126 (265)
T COG3396 101 PTGDWADTIVRGFLVDGAAIYQLEAL 126 (265)
T ss_pred CCccHHHHHHHHHHHhHHHHHHHHHH
Confidence 2227887 55889999999887654
No 85
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=42.55 E-value=23 Score=34.93 Aligned_cols=126 Identities=15% Similarity=0.186 Sum_probs=66.2
Q ss_pred HHHHHhhhccCcchHHHHhhhhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHH--HHHHHHHH
Q 016462 120 ALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE--KSIQYLIR 197 (389)
Q Consensus 120 ~Lv~~miTEd~LPtY~~~L~~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE--~~~~~li~ 197 (389)
-+...++...+.|.+...+...- .=..||-.|=.-.-+-+.- |.+.-..+. .+...+++
T Consensus 85 ~~~~~~~~~~~~P~~~eLv~~Ms------------------~LarEEL~HFeqVl~im~~-RGi~l~~~~~d~Ya~~L~k 145 (240)
T PF06175_consen 85 QLSKSLQPKSHYPEKEELVDKMS------------------RLAREELHHFEQVLEIMKK-RGIPLGPDRKDRYAKGLRK 145 (240)
T ss_dssp ---------------HHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-TT---------SHHHHHHT
T ss_pred cccccccccccccccHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHH
Confidence 34455556677777776554433 2245777776555554433 222222222 12222322
Q ss_pred cCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016462 198 SGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 269 (389)
Q Consensus 198 ~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 269 (389)
. ..-....--+..++..++.| +=|+-+.+.+|... |+.|++....+..=|+|||.-|.++-+.+++.
T Consensus 146 ~-vR~~ep~~lvDrLLv~AlIE---ARSCERF~lLa~~l-D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~~~ 212 (240)
T PF06175_consen 146 H-VRKGEPERLVDRLLVGALIE---ARSCERFALLAEHL-DEELAKFYRSLLRSEARHYQDYLKLARQYFDE 212 (240)
T ss_dssp T-S-SSTTHHHHHHHHHHHHHH---HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHHHHHHHCCCS-H
T ss_pred h-ccCCchHhHHHHHHHHHhHh---hhhHHHHHHHHHhh-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCc
Confidence 1 11111122356788888888 45778888898878 99999999999999999999999988777754
No 86
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=42.37 E-value=1.8e+02 Score=27.05 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=48.6
Q ss_pred hHhhhHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHh-----------HH--
Q 016462 164 AEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGN-----------TA-- 230 (389)
Q Consensus 164 AEEnRHG~aL~~YL~lSgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n-----------ta-- 230 (389)
.-|.+|=+++..-+---|-.||.. +..++...+|-..=.|..+.++|..+---+ +.
T Consensus 36 ~SEq~Hmdav~~Ll~kY~l~dP~~-----------~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL 104 (162)
T PF09968_consen 36 RSEQRHMDAVKALLEKYGLEDPVE-----------GDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADL 104 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-S-----------S-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----------cCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHH
Confidence 368999988777665545556652 333333345555556666666554432221 11
Q ss_pred -HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016462 231 -RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 231 -rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
+....+.++-+..+..++-.==..|..+|.+.++.
T Consensus 105 ~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~ 140 (162)
T PF09968_consen 105 EEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLER 140 (162)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344667788888777765555788888877654
No 87
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=42.33 E-value=94 Score=26.72 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=45.6
Q ss_pred hhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHH
Q 016462 219 ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILAL 278 (389)
Q Consensus 219 E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Ai 278 (389)
|.+....|.+.....+..+.+.++..+..++.+|..|...+.+.+.. +.-.|...+..+
T Consensus 18 e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~-lGg~p~~~~~~~ 76 (148)
T cd01052 18 EWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYE-LGGTPPRDPKDW 76 (148)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHH
Confidence 34445567776666666678899999999999999999999888876 777787766444
No 88
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=41.02 E-value=47 Score=33.30 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 239 MKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 239 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
|-.+..+...+.+|++|..+|..+++.+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l 122 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAV 122 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999754
No 89
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=40.46 E-value=57 Score=29.70 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 216 SFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 216 sfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
++-|..+.+-|-.-+-..+ .+|.++.++..||.+|..|...+...+..+.+
T Consensus 32 ~~gEl~ai~qYl~q~~~~~--~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 32 AFGELSAAMQYLFQSFNFR--EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred ccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456677776665444321 68999999999999999999999999988776
No 90
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=40.43 E-value=96 Score=30.34 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.0
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
.++|-.+..++..+.+|++|..+|..+++.+..
T Consensus 75 ~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~ 107 (280)
T cd07911 75 EGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGV 107 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457888999999999999999999999988743
No 91
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=39.84 E-value=3.3e+02 Score=25.62 Aligned_cols=106 Identities=23% Similarity=0.215 Sum_probs=68.4
Q ss_pred CchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHh
Q 016462 151 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMK--QIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGN 228 (389)
Q Consensus 151 ~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~--~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n 228 (389)
+.++.+.|++.=+.||..|+.-|=+|+.-+|. +|. .++. .+.+ ..+|...|--+-=+|.--..+=.|
T Consensus 35 ~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~-~~~l~~I~~-------P~~~---~~s~~e~f~~tlehEq~vt~~I~~ 103 (167)
T COG1528 35 SLPGFAKFLRAQAQEELTHAMKLFNYLNERGA-RPELKAIEA-------PPNK---FSSLKELFEKTLEHEQKVTSSINE 103 (167)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceecCcCC-------Cccc---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999966443 222 2221 1222 146777776666677666666677
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 229 TARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 229 tarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
++.+|.+.+|----.-++--=++=..=+.-+..|++++-
T Consensus 104 L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~l~~~I~d~~~ 142 (167)
T COG1528 104 LAEVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKLE 142 (167)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666665555555544444455556666665543
No 92
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=39.17 E-value=53 Score=31.80 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=29.7
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 268 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 268 (389)
.+.|-.+..++..+.+|+.|-.+|..+++.+..
T Consensus 74 ~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 74 VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 458999999999999999999999999987753
No 93
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=37.03 E-value=4.8e+02 Score=26.78 Aligned_cols=115 Identities=17% Similarity=0.027 Sum_probs=71.9
Q ss_pred chhHhhhHHHHHHHHHHHhcCCChHHHHHH----HHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhhC
Q 016462 162 WTAEENRHGDLLNKYLYLSGRVDMKQIEKS----IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHG 237 (389)
Q Consensus 162 WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~----~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~g 237 (389)
=..+|.-||..|-.|+---|.-+.+.+..+ ..|. +-|+.+. .|-....+-..|...+-.+.+.. |.+ +.
T Consensus 80 iaqDelGHa~~ly~~aeeLG~~r~e~~~a~~r~~~~f~--n~fe~P~-~dwAdtvvr~~L~D~a~~~~~~~---L~~-sS 152 (314)
T PRK13778 80 KVQDEAGHGLYLYSAAETLGVSREELIDDLLSGKAKYS--SIFNYPT-LTWADVGVIGWLVDGAAIMNQVP---LCR-CS 152 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcchHHhc--ccccCCC-CCHHHHHHHHHHHHHHHHHHHHH---Hhc-CC
Confidence 345778899999999922254333333322 2222 2244432 24344555555566555554444 443 77
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHh
Q 016462 238 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMK 283 (389)
Q Consensus 238 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd---~tm~Aia~mm~ 283 (389)
++.|+.|+.+|-+.|.-|..+=.+.|.++-+-.+. .+-.||..+..
T Consensus 153 y~plA~~a~Ki~KEe~yH~rhg~~wl~rL~~GT~esr~r~Q~Ald~~Wp 201 (314)
T PRK13778 153 YGPYARAMVRICKEESFHQRQGEEILLALARGTPAQKQMAQDALNRWWW 201 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764332 24445555443
No 94
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=36.82 E-value=56 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc
Q 016462 252 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 286 (389)
Q Consensus 252 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i 286 (389)
|.+|..+|.++... +.+.|+.+...|..|+++-|
T Consensus 9 e~~~~~~f~~~~~~-l~~~~~~~~~~f~~Va~~lf 42 (100)
T smart00337 9 NKRYERAFSSFSAQ-LHVTPGTAIELFGEVATELF 42 (100)
T ss_pred HHHHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHH
Confidence 68899999999888 77788888999999887533
No 95
>PRK13456 DNA protection protein DPS; Provisional
Probab=35.95 E-value=3.9e+02 Score=25.46 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=64.2
Q ss_pred HHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc-CCCCCCC
Q 016462 215 TSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF-RMPGHFM 293 (389)
Q Consensus 215 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i-~MPa~~m 293 (389)
..--|..+..+|...+..++-..-+.++..+..-+.||..|+....+=+.. |.=.|+.-..-+..+...++ ..|...
T Consensus 28 AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~q-LGG~P~~~p~~~~~ls~~~~~~~p~d~- 105 (186)
T PRK13456 28 NAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYE-LGGKLPRDIREFHDISACPDAYLPENP- 105 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHhhhhcCccccCCCCc-
Confidence 334688889999998888765445667799999999999999887643332 23334433333333332211 111100
Q ss_pred CC---------CCcchhhhhHHHHHHHhCCCChhcHHHHHH
Q 016462 294 YD---------GQDDKIFDHFSAVTQRLGVYTGHDYADILE 325 (389)
Q Consensus 294 ~d---------~~~~~lf~~~s~vaqr~GvYt~~dy~dIl~ 325 (389)
.| -....+.+.|..+++-+|--|+..|.-+++
T Consensus 106 tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~ 146 (186)
T PRK13456 106 TDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALA 146 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 00 012356677888888777667766665444
No 96
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=34.39 E-value=57 Score=28.59 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH---HcCCCCCCC-CCchhhHHHHHHhhhhhHHHHHhHHHHHhhhCCHHHHHHHhH
Q 016462 172 LLNKYLYLSGRVDMKQIEKSIQYLI---RSGMDPKFE-NNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGT 247 (389)
Q Consensus 172 aL~~YL~lSgrvDp~~lE~~~~~li---~~G~d~~~~-~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~ 247 (389)
-|.+||+-.++++.++++.+...|. ...|..... .+|..+-.|+|+ .+. .+ ..-||+|.+.|..
T Consensus 11 Fl~~~l~~~~~l~~~~~~~F~~~L~~~L~~ry~~HW~P~~P~kGsayRcI-----rin---~~----~~~Dp~l~~Aa~~ 78 (118)
T PF07742_consen 11 FLTRLLYNKGRLPRRQVDRFAEELENLLCERYKGHWYPENPSKGSAYRCI-----RIN---PG----HKMDPVLEQAAKE 78 (118)
T ss_dssp HHHHHHHHHC-B-HHHHHHHHHHHHHHHHHHHTTS--TTSTTTTHHHH-E-----EES---------SSB-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCceEEE-----EEc---CC----CCCCHHHHHHHHH
Confidence 4788999999999998877643332 223333221 489999999998 221 11 1339999999987
Q ss_pred hhhh
Q 016462 248 IASD 251 (389)
Q Consensus 248 IAaD 251 (389)
..-+
T Consensus 79 sgl~ 82 (118)
T PF07742_consen 79 SGLS 82 (118)
T ss_dssp TT--
T ss_pred hCCC
Confidence 6544
No 97
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.03 E-value=81 Score=25.79 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=33.2
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhh
Q 016462 323 ILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTA 370 (389)
Q Consensus 323 Il~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~ 370 (389)
++-|-..+|+... |||++- ++-|..|-.+.+|++||.+-.||.
T Consensus 22 L~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T PF06667_consen 22 LILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIETLERI 64 (75)
T ss_pred HHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678898754 898653 567888999999999999866764
No 98
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.24 E-value=72 Score=26.23 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhc
Q 016462 324 LEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAK 371 (389)
Q Consensus 324 l~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~ 371 (389)
+-|-..+|+... |||++ -+.-|..|-.+.+|++||.+-.|+.=
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788775 89965 44568889999999999999777643
No 99
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=31.20 E-value=1.1e+02 Score=31.58 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChh
Q 016462 232 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 273 (389)
Q Consensus 232 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 273 (389)
+......|-++..++..+..|+.|-.+|+.+++.+. .++++
T Consensus 121 l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e 161 (369)
T PRK07209 121 IYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGE 161 (369)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Confidence 334567899999999999999999999999999883 46655
No 100
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=31.04 E-value=98 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc
Q 016462 252 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 286 (389)
Q Consensus 252 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i 286 (389)
|.+|..+|.++.+. |.+.|+.+-..|..|+++-|
T Consensus 79 e~~~~~~f~~m~~q-L~it~~~a~~~F~~Va~elF 112 (213)
T TIGR00865 79 ERRYRRAFSDMTSQ-LHITPFTARQSFFQVAAELF 112 (213)
T ss_pred HHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHHHh
Confidence 78999999999998 88889999999999997544
No 101
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=2.6e+02 Score=33.50 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCCCCCCCCcchhhhhHHHHHHHhCCCCh
Q 016462 238 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTG 317 (389)
Q Consensus 238 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MPa~~m~d~~~~~lf~~~s~vaqr~GvYt~ 317 (389)
+.++..+|..|++-=.--.++=-.+++.+.-..|+..+.....-+- | .+ .....+.-+|=.
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL-----~----------sl----l~ls~d~k~~~r 886 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELL-----P----------SL----LALSHDHKIKVR 886 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH-----H----------HH----HHHHHhhhHHHH
Confidence 3467778888887544445566677777777777776665553331 1 11 224444445555
Q ss_pred hcHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhh
Q 016462 318 HDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKA 365 (389)
Q Consensus 318 ~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~ 365 (389)
..-..+++.|+++.+++++.++-+ +..+++=++|||..+|..
T Consensus 887 ~Kvr~LlekLirkfg~~eLe~~~p------ee~~klL~nIRK~r~R~~ 928 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFGAEELESFLP------EEDMKLLTNIRKRRRRKK 928 (1176)
T ss_pred HHHHHHHHHHHHHhCHHHHHhhCH------HHHHHHHHHHHHHHHHhh
Confidence 556679999999999999999877 777888899999988765
No 102
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=28.21 E-value=58 Score=28.49 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHhCCCC---hhc---HHHHHHHHHhcccccc-ccCCCHHHHHHHHHHhc
Q 016462 300 KIFDHFSAVTQRLGVYT---GHD---YADILEFLIERWKVEK-LIGLTSEGRKAQDFVCG 352 (389)
Q Consensus 300 ~lf~~~s~vaqr~GvYt---~~d---y~dIl~~ll~~W~v~~-~~gL~~eg~~Ard~l~~ 352 (389)
.+|+.|-.+++-++-|. +.. |.+-++.|+++|+|+- +=-|| +...|++.+-.
T Consensus 16 ~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS-dD~~Ak~m~~q 74 (108)
T PF08855_consen 16 DIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS-DDPEAKDMKEQ 74 (108)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHH
Confidence 56788888888666654 433 8899999999999984 34787 77788887653
No 103
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=27.47 E-value=1.7e+02 Score=29.29 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 232 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 232 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
+.....+|-.+..++.++..|+.|..+|..+++.+
T Consensus 81 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 81 LMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33346789999999999999999999999999975
No 104
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=26.03 E-value=1.2e+02 Score=29.38 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=32.5
Q ss_pred hhhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016462 218 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 266 (389)
Q Consensus 218 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 266 (389)
.|.+|-.-|--..=-.+.......+.++..|+.+|++|+..-.|++.++
T Consensus 7 lE~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~al 55 (227)
T PF12902_consen 7 LELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNAL 55 (227)
T ss_dssp HHHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556655554322111112234488999999999999999999999864
No 105
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=26.01 E-value=1.4e+02 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhhCChhHHHHHHHHHhh
Q 016462 252 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKK 284 (389)
Q Consensus 252 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~ 284 (389)
|.+|..+|.++++.+.-..|+.+...|..++.+
T Consensus 9 e~~~~~~f~~~~~~l~~~~~~~~~~~f~~v~~~ 41 (101)
T PF00452_consen 9 ERKYEDFFENMLNQLNINTPDNAYETFNEVAEE 41 (101)
T ss_dssp HHHHHHHHHHHHHHHCSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 566777777777776655666677777777753
No 106
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=25.13 E-value=56 Score=32.29 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=17.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHH
Q 016462 245 CGTIASDEKRHETAYTKIVEK 265 (389)
Q Consensus 245 ~~~IAaDE~RH~~~Y~~iv~~ 265 (389)
.-++|.||.||+..+.+-+++
T Consensus 104 ~~~va~dEarHf~ll~~rL~~ 124 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEE 124 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999874
No 107
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=24.89 E-value=1.8e+02 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.9
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016462 238 DMKLAQICGTIASDEKRHETAYTKIVEKLF 267 (389)
Q Consensus 238 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 267 (389)
+....+-+.+...||.+|...|.++++++-
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777888999999999999999877
No 108
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=24.18 E-value=2.7e+02 Score=26.36 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=40.3
Q ss_pred hhHHHHHhHHHHHhhhCCHHHHHHHhHhhhh----------------h--hHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 016462 221 ATFISHGNTARLVKKHGDMKLAQICGTIASD----------------E--KRHETAYTKIVEKLFEIDPDDTILALAGMM 282 (389)
Q Consensus 221 AT~ish~ntarla~~~gDPvLa~I~~~IAaD----------------E--~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 282 (389)
+-.-||..+.+ .+|+|.|..++..+..- + ..-.....+|++++...|++.+..++...+
T Consensus 141 ~d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~~~~~H~ 217 (253)
T PRK10421 141 ADVRFHLAIAE---ASHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSQLTEQHQAVMDAILAGDAEGARKAMMAHL 217 (253)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678888555 58899988877665311 1 111345777888888888888777776666
Q ss_pred h
Q 016462 283 K 283 (389)
Q Consensus 283 ~ 283 (389)
.
T Consensus 218 ~ 218 (253)
T PRK10421 218 S 218 (253)
T ss_pred H
Confidence 4
No 109
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=23.96 E-value=7.4e+02 Score=24.83 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhhccCCCCC--CCCCCCcchhhhhHHHHHHHhCC
Q 016462 272 DDTILALAGMMKKRFRMPGH--FMYDGQDDKIFDHFSAVTQRLGV 314 (389)
Q Consensus 272 d~tm~Aia~mm~~~i~MPa~--~m~d~~~~~lf~~~s~vaqr~Gv 314 (389)
++.-..|.++++++-.+||- ..+...|+.. ......+.+.+.
T Consensus 164 ~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa-~~L~~~~~~~~~ 207 (282)
T cd06102 164 GDAEAAVRERLRRGEALPGFGHPLYPDGDPRA-AALLAALRPLGP 207 (282)
T ss_pred ccHHHHHHHHHHcCCcccCCCCCCCCCCCccH-HHHHHHHHHHhh
Confidence 35566788888888888865 4443344432 333444455553
No 110
>PF13668 Ferritin_2: Ferritin-like domain
Probab=23.91 E-value=2.4e+02 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=26.8
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 236 HGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 236 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
..++...+++..|+.+|..|..+.++.++
T Consensus 35 ~~~~~~~~~~~~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 35 ALDPEVRDLFQEIADQEQGHVDFLQAALE 63 (137)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999986
No 111
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=23.60 E-value=6.2e+02 Score=23.74 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhccCcchHHHHhh-hhccCccccCCCchhHHHHhhhchhHhhhHHHHHHHHHHHhcCCChHHHHHHHH
Q 016462 115 AEHFVALVGEMITEEALPTYQTMLN-TLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQ 193 (389)
Q Consensus 115 dd~~v~Lv~~miTEd~LPtY~~~L~-~~fgv~~e~g~~~~~W~~Wv~~WTAEEnRHG~aL~~YL~lSgrvDp~~lE~~~~ 193 (389)
+.++-.|+.+.--|=-.--|-+.+. .+-|. +...-..+...=.-|--.|..+|..=+|--|.-=|+-+.++ .
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~Gl------e~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l-~ 88 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALKGL------EGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKL-H 88 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHH-H
Confidence 3444455555444433333444444 23342 12222333333334556799999998877665444444433 3
Q ss_pred HHHHcCCCCCCCCCch--hhHHHHHHh-hhhhHHHHHhHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016462 194 YLIRSGMDPKFENNPY--NGFVYTSFQ-ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 264 (389)
Q Consensus 194 ~li~~G~d~~~~~~p~--~~~vYtsfQ-E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 264 (389)
..-+|...+.+ .+|+ .+++-+.+- |+..---|.-+-.+- .-.||.--.+...|-.||.+|...|.+++.
T Consensus 89 dISgC~~a~LP-edp~D~~~~l~vlv~AE~CAir~ykeic~~T-~GkDprTyeLa~~IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 89 DISGCKPAYLP-EDPYDIDEILAVLVKAERCAIRAYKEICNLT-AGKDPRTYELAEAILREEIEHRTWFLELLG 160 (172)
T ss_pred hhcCCCCCCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34344444443 3554 455444332 221111233322231 124999999999999999999999998874
No 112
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.70 E-value=1.5e+02 Score=24.13 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhh
Q 016462 323 ILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTA 370 (389)
Q Consensus 323 Il~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~ 370 (389)
++-|-..+|+... |||++ -++-|..|-.+.+|++||.+-.||.
T Consensus 22 l~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 22 LILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888874 78765 3445778889999999999866764
No 113
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=21.13 E-value=2.8e+02 Score=25.67 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.1
Q ss_pred hHHHHHhHHHHHhhhCCHHHHHHHhHhhh----------------hhhHHHHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 016462 222 TFISHGNTARLVKKHGDMKLAQICGTIAS----------------DEKRHETAYTKIVEKLFEIDPDDTILALAGMMK 283 (389)
Q Consensus 222 T~ish~ntarla~~~gDPvLa~I~~~IAa----------------DE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 283 (389)
-.-||..+.+ .+|++.|.+++..+.. +-........+|++++...|++.+..++...+.
T Consensus 135 d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~Ai~~~D~~~A~~~~~~hl~ 209 (221)
T PRK11414 135 NRLFRLAIYH---RSNMPILCEMIEQLWVRMGPSLHYLYEAINPAELREHIENYRLLLAALKAKDKEGCRHCLAEIMQ 209 (221)
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777555 5778888776665521 111123445688889999999988888877774
No 114
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=20.98 E-value=8.7e+02 Score=24.50 Aligned_cols=117 Identities=16% Similarity=0.051 Sum_probs=80.0
Q ss_pred hchhHhhhHHHHHHHHH-HHhcCCChHHHHHH---HHHHHHcCCCCCCCCCchhhHHHHHHhhhhhHHHHHhHHHHHhhh
Q 016462 161 AWTAEENRHGDLLNKYL-YLSGRVDMKQIEKS---IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKH 236 (389)
Q Consensus 161 ~WTAEEnRHG~aL~~YL-~lSgrvDp~~lE~~---~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~ 236 (389)
.=.-.|..||..|=.++ .+-|.-+-+.+... ++..= +=++.++ .|=..+++.+.++..+--+.-.++.+ +
T Consensus 56 ~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~k~n-~~~n~P~-~~Wadt~~~~fLvD~~~~~~l~~l~~----s 129 (265)
T COG3396 56 NIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRHKRN-SLFNLPT-GDWADTIVRGFLVDGAAIYQLEALAD----S 129 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHHHH-HHHcCCC-ccHHHHHHHHHHHhHHHHHHHHHHHh----c
Confidence 34556888999988888 33233332333322 22111 1223332 35567889999999998887776554 6
Q ss_pred CCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHh
Q 016462 237 GDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMK 283 (389)
Q Consensus 237 gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd---~tm~Aia~mm~ 283 (389)
..+-|++|..+|-+-|.-|-.+=++.+.++-+-.+. -+..||-.-..
T Consensus 130 sy~PlA~~a~k~~kEe~fHl~~~~~~l~~l~~gT~~~~~~~Q~AlN~wwp 179 (265)
T COG3396 130 SYGPLARAAQKICKEEEFHLRHGKTWLKRLANGTEESRQMAQAALNRWWP 179 (265)
T ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999887774 34556655544
No 115
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=20.59 E-value=84 Score=31.07 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=41.9
Q ss_pred hCCCChhcHHHHHHHHHhcccccc---ccCCCHHHHHHHHHHhcchHHHHHH
Q 016462 312 LGVYTGHDYADILEFLIERWKVEK---LIGLTSEGRKAQDFVCGLPLRIRRI 360 (389)
Q Consensus 312 ~GvYt~~dy~dIl~~ll~~W~v~~---~~gL~~eg~~Ard~l~~l~~r~~r~ 360 (389)
.+.|+..++.+.+..+++.+++.. +-|.|=-|.-|+.+.+..|.|++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~l 155 (351)
T TIGR01392 104 FPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAI 155 (351)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 345888999998889999999986 5699999999999999889888863
No 116
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=20.52 E-value=96 Score=32.04 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=43.0
Q ss_pred hCCCChhcHHHHHHHHHhcccccccc---CCCHHHHHHHHHHhcchHHHHHH
Q 016462 312 LGVYTGHDYADILEFLIERWKVEKLI---GLTSEGRKAQDFVCGLPLRIRRI 360 (389)
Q Consensus 312 ~GvYt~~dy~dIl~~ll~~W~v~~~~---gL~~eg~~Ard~l~~l~~r~~r~ 360 (389)
-..||..|+.+.+..+++..+|.++. |-|=-|-.|.++....|.|++++
T Consensus 138 fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~l 189 (389)
T PRK06765 138 FPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERM 189 (389)
T ss_pred CCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence 45699999999999999999998754 88999999999999999998884
Done!