Query 016463
Match_columns 389
No_of_seqs 332 out of 2313
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.8 4.8E-19 1.1E-23 154.8 15.6 81 37-121 8-88 (195)
2 KOG0113 U1 small nuclear ribon 99.8 1.4E-18 3E-23 163.0 18.2 90 32-121 94-184 (335)
3 PLN03134 glycine-rich RNA-bind 99.8 5.5E-18 1.2E-22 148.1 16.3 84 37-120 32-116 (144)
4 KOG4207 Predicted splicing fac 99.7 1.5E-16 3.3E-21 142.4 17.8 87 33-119 7-94 (256)
5 KOG0121 Nuclear cap-binding pr 99.6 9.9E-16 2.2E-20 127.7 7.6 90 36-125 33-123 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.6E-15 1.2E-19 146.5 13.1 83 37-119 267-350 (352)
7 PF00076 RRM_1: RNA recognitio 99.6 1E-14 2.2E-19 110.0 9.4 70 42-111 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3E-14 6.4E-19 141.3 11.3 82 38-119 2-84 (352)
9 TIGR01659 sex-lethal sex-letha 99.5 3.9E-14 8.5E-19 140.6 10.8 83 35-117 103-186 (346)
10 KOG0105 Alternative splicing f 99.5 7.2E-14 1.6E-18 123.5 10.4 81 37-119 4-84 (241)
11 TIGR01659 sex-lethal sex-letha 99.5 5E-13 1.1E-17 132.7 14.0 83 38-120 192-277 (346)
12 PF14259 RRM_6: RNA recognitio 99.5 3.9E-13 8.5E-18 102.2 9.6 70 42-111 1-70 (70)
13 KOG0130 RNA-binding protein RB 99.5 2E-13 4.4E-18 114.9 7.8 85 36-120 69-154 (170)
14 KOG0149 Predicted RNA-binding 99.4 1.6E-13 3.4E-18 125.6 7.4 78 39-117 12-90 (247)
15 KOG0122 Translation initiation 99.4 3.5E-13 7.5E-18 123.9 9.6 83 36-118 186-269 (270)
16 PLN03120 nucleic acid binding 99.4 5.1E-13 1.1E-17 125.8 10.2 75 39-116 4-78 (260)
17 KOG0415 Predicted peptidyl pro 99.4 3.1E-13 6.7E-18 129.6 8.7 86 35-120 235-321 (479)
18 KOG0125 Ataxin 2-binding prote 99.4 5.3E-13 1.2E-17 127.1 9.0 84 34-118 91-174 (376)
19 KOG0126 Predicted RNA-binding 99.4 3.7E-14 8E-19 125.0 1.0 82 37-118 33-115 (219)
20 TIGR01648 hnRNP-R-Q heterogene 99.4 4.4E-12 9.6E-17 132.7 15.8 77 37-120 231-309 (578)
21 TIGR01645 half-pint poly-U bin 99.4 1.4E-12 2.9E-17 136.9 11.0 82 38-119 203-285 (612)
22 smart00362 RRM_2 RNA recogniti 99.4 2.6E-12 5.7E-17 95.7 9.5 72 41-113 1-72 (72)
23 TIGR01645 half-pint poly-U bin 99.4 1.2E-12 2.5E-17 137.4 10.1 81 36-116 104-185 (612)
24 KOG0111 Cyclophilin-type pepti 99.4 4.2E-13 9.1E-18 121.5 5.3 88 36-123 7-95 (298)
25 KOG0148 Apoptosis-promoting RN 99.4 9.5E-13 2.1E-17 122.5 7.7 87 34-120 57-144 (321)
26 PLN03213 repressor of silencin 99.4 1.5E-12 3.4E-17 129.4 9.4 78 37-117 8-87 (759)
27 TIGR01622 SF-CC1 splicing fact 99.4 3.1E-12 6.8E-17 131.4 12.1 80 38-117 185-265 (457)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.4 3.4E-12 7.3E-17 132.9 11.9 82 36-117 292-374 (509)
29 TIGR01628 PABP-1234 polyadenyl 99.3 3.6E-12 7.8E-17 134.6 11.3 77 41-117 2-79 (562)
30 PLN03121 nucleic acid binding 99.3 6.2E-12 1.3E-16 116.8 10.6 74 38-114 4-77 (243)
31 cd00590 RRM RRM (RNA recogniti 99.3 1.4E-11 3E-16 92.3 10.1 74 41-114 1-74 (74)
32 TIGR01628 PABP-1234 polyadenyl 99.3 6.1E-12 1.3E-16 132.8 11.0 83 36-118 282-364 (562)
33 KOG0131 Splicing factor 3b, su 99.3 2E-12 4.4E-17 114.2 6.0 82 35-116 5-87 (203)
34 KOG0114 Predicted RNA-binding 99.3 8.5E-12 1.8E-16 100.7 8.4 83 33-117 12-94 (124)
35 KOG4661 Hsp27-ERE-TATA-binding 99.3 6.3E-10 1.4E-14 112.5 23.6 83 38-120 404-487 (940)
36 TIGR01622 SF-CC1 splicing fact 99.3 9.2E-12 2E-16 128.0 10.9 80 37-117 87-167 (457)
37 COG0724 RNA-binding proteins ( 99.3 1E-11 2.2E-16 115.5 10.1 79 39-117 115-194 (306)
38 TIGR01648 hnRNP-R-Q heterogene 99.3 9.5E-12 2.1E-16 130.3 10.0 77 37-113 56-133 (578)
39 smart00360 RRM RNA recognition 99.3 1.6E-11 3.5E-16 90.9 8.5 70 44-113 1-71 (71)
40 KOG0148 Apoptosis-promoting RN 99.3 1.6E-11 3.6E-16 114.3 9.5 84 31-119 156-239 (321)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.2E-11 6.9E-16 125.2 11.1 79 36-118 272-351 (481)
42 KOG0127 Nucleolar protein fibr 99.2 2.8E-11 6E-16 121.9 8.9 83 38-120 116-198 (678)
43 KOG0117 Heterogeneous nuclear 99.2 4E-11 8.8E-16 118.4 9.6 80 36-115 80-161 (506)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 5.7E-11 1.2E-15 123.3 10.3 76 38-118 1-78 (481)
45 KOG0108 mRNA cleavage and poly 99.2 4.2E-11 9.2E-16 121.2 8.0 80 40-119 19-99 (435)
46 KOG0124 Polypyrimidine tract-b 99.2 1.5E-11 3.2E-16 118.6 4.4 75 39-113 113-188 (544)
47 KOG0146 RNA-binding protein ET 99.2 2.7E-11 5.8E-16 112.7 5.5 86 35-120 281-367 (371)
48 PF13893 RRM_5: RNA recognitio 99.2 1.5E-10 3.3E-15 84.3 8.0 56 56-115 1-56 (56)
49 KOG0117 Heterogeneous nuclear 99.1 3.6E-11 7.9E-16 118.7 5.2 101 13-120 233-333 (506)
50 KOG0145 RNA-binding protein EL 99.1 1.8E-10 4E-15 106.8 8.6 83 37-119 39-122 (360)
51 KOG0127 Nucleolar protein fibr 99.1 2.1E-10 4.5E-15 115.7 9.6 86 33-118 286-378 (678)
52 KOG0116 RasGAP SH3 binding pro 99.1 7.8E-10 1.7E-14 111.4 13.0 81 37-118 286-367 (419)
53 KOG0145 RNA-binding protein EL 99.1 4.4E-10 9.5E-15 104.4 10.0 81 37-117 276-357 (360)
54 KOG0144 RNA-binding protein CU 99.1 1.2E-10 2.6E-15 114.6 5.5 84 37-120 122-208 (510)
55 KOG0109 RNA-binding protein LA 99.1 2.2E-10 4.8E-15 107.8 6.9 72 40-118 3-74 (346)
56 smart00361 RRM_1 RNA recogniti 99.0 8.4E-10 1.8E-14 84.4 8.2 60 53-112 2-69 (70)
57 KOG0109 RNA-binding protein LA 99.0 5.2E-10 1.1E-14 105.4 7.9 100 37-143 76-181 (346)
58 KOG0147 Transcriptional coacti 99.0 2.8E-10 6.1E-15 115.1 6.2 80 40-119 279-359 (549)
59 KOG0144 RNA-binding protein CU 99.0 5.8E-10 1.3E-14 109.8 6.9 84 37-120 32-119 (510)
60 TIGR01642 U2AF_lg U2 snRNP aux 98.9 2.2E-09 4.7E-14 111.9 9.0 73 36-114 172-256 (509)
61 KOG0131 Splicing factor 3b, su 98.9 3E-09 6.6E-14 94.2 6.3 88 34-121 91-180 (203)
62 KOG4206 Spliceosomal protein s 98.9 5.1E-09 1.1E-13 95.9 7.9 85 34-120 4-92 (221)
63 KOG0123 Polyadenylate-binding 98.9 5.6E-09 1.2E-13 104.6 8.6 80 39-120 76-155 (369)
64 KOG4212 RNA-binding protein hn 98.8 2.5E-08 5.5E-13 98.5 11.9 80 38-117 43-123 (608)
65 KOG0132 RNA polymerase II C-te 98.8 8.7E-09 1.9E-13 107.8 7.7 76 39-119 421-496 (894)
66 KOG0106 Alternative splicing f 98.8 8.7E-09 1.9E-13 94.9 5.8 74 40-120 2-75 (216)
67 KOG4208 Nucleolar RNA-binding 98.8 1.9E-08 4.1E-13 90.9 7.8 84 35-118 45-130 (214)
68 KOG0123 Polyadenylate-binding 98.8 1.5E-08 3.3E-13 101.5 8.0 75 40-119 2-76 (369)
69 KOG0124 Polypyrimidine tract-b 98.8 2.5E-08 5.4E-13 96.6 8.8 81 38-118 209-290 (544)
70 KOG0110 RNA-binding protein (R 98.8 1.6E-08 3.6E-13 105.1 8.1 78 39-116 515-596 (725)
71 KOG0153 Predicted RNA-binding 98.7 2.1E-08 4.6E-13 96.7 7.8 73 40-117 229-302 (377)
72 KOG4205 RNA-binding protein mu 98.7 2.4E-08 5.3E-13 97.3 6.0 82 38-120 5-87 (311)
73 KOG4209 Splicing factor RNPS1, 98.7 1.1E-07 2.3E-12 89.5 9.6 82 36-118 98-180 (231)
74 KOG0533 RRM motif-containing p 98.7 6.7E-08 1.5E-12 90.9 8.2 84 36-119 80-163 (243)
75 KOG2202 U2 snRNP splicing fact 98.6 1E-07 2.3E-12 88.8 8.8 113 2-116 26-146 (260)
76 KOG0146 RNA-binding protein ET 98.6 4.4E-08 9.4E-13 91.5 5.3 82 38-119 18-102 (371)
77 KOG4205 RNA-binding protein mu 98.6 7.1E-08 1.5E-12 94.1 6.0 82 38-120 96-178 (311)
78 KOG0110 RNA-binding protein (R 98.6 3.8E-08 8.2E-13 102.4 4.3 81 38-118 612-693 (725)
79 KOG1548 Transcription elongati 98.6 1.9E-07 4.2E-12 90.1 8.5 83 36-118 131-221 (382)
80 KOG1457 RNA binding protein (c 98.5 6.9E-07 1.5E-11 81.8 9.4 84 38-121 33-121 (284)
81 KOG4212 RNA-binding protein hn 98.5 2.5E-07 5.5E-12 91.6 6.6 77 35-115 532-608 (608)
82 KOG4454 RNA binding protein (R 98.5 6.4E-08 1.4E-12 88.1 2.2 80 37-117 7-86 (267)
83 KOG0151 Predicted splicing reg 98.4 5.9E-07 1.3E-11 93.5 7.4 80 38-117 173-256 (877)
84 KOG4660 Protein Mei2, essentia 98.3 4E-07 8.6E-12 92.8 4.3 76 32-111 68-143 (549)
85 KOG0226 RNA-binding proteins [ 98.2 1.4E-06 3E-11 81.2 4.4 82 37-118 188-270 (290)
86 KOG1190 Polypyrimidine tract-b 98.2 1.2E-05 2.7E-10 79.3 10.2 76 39-118 297-373 (492)
87 KOG1995 Conserved Zn-finger pr 98.1 1.5E-05 3.2E-10 77.8 8.5 85 36-120 63-156 (351)
88 PF04059 RRM_2: RNA recognitio 98.0 3.3E-05 7.1E-10 62.9 9.0 80 40-119 2-88 (97)
89 KOG4676 Splicing factor, argin 98.0 1.9E-06 4.2E-11 84.4 1.5 70 40-113 152-221 (479)
90 KOG0106 Alternative splicing f 98.0 1.1E-05 2.4E-10 74.6 5.6 70 36-112 96-165 (216)
91 KOG0120 Splicing factor U2AF, 97.9 8.9E-06 1.9E-10 83.5 4.8 85 36-120 286-371 (500)
92 PF11608 Limkain-b1: Limkain b 97.8 5.9E-05 1.3E-09 59.2 6.9 68 40-116 3-75 (90)
93 KOG4210 Nuclear localization s 97.8 2E-05 4.4E-10 76.4 4.6 86 34-120 179-266 (285)
94 KOG4211 Splicing factor hnRNP- 97.8 8E-05 1.7E-09 75.3 8.6 77 36-115 7-83 (510)
95 KOG1457 RNA binding protein (c 97.7 2.7E-05 5.9E-10 71.5 4.1 68 36-106 207-274 (284)
96 KOG4676 Splicing factor, argin 97.7 7.7E-05 1.7E-09 73.4 7.0 74 39-113 7-84 (479)
97 KOG0147 Transcriptional coacti 97.7 8.5E-05 1.9E-09 76.0 7.3 60 54-117 468-527 (549)
98 PF08777 RRM_3: RNA binding mo 97.6 0.0001 2.2E-09 61.0 5.4 70 40-114 2-76 (105)
99 KOG4211 Splicing factor hnRNP- 97.6 0.00014 3.1E-09 73.5 6.9 78 37-115 101-179 (510)
100 KOG4206 Spliceosomal protein s 97.6 0.00023 5E-09 65.6 7.6 77 36-116 143-220 (221)
101 KOG2314 Translation initiation 97.5 0.00038 8.3E-09 71.4 9.3 90 25-114 44-140 (698)
102 KOG0120 Splicing factor U2AF, 97.4 0.00025 5.4E-09 73.1 6.6 62 55-116 425-490 (500)
103 COG5175 MOT2 Transcriptional r 97.4 0.00034 7.3E-09 67.8 6.5 79 38-116 113-201 (480)
104 KOG0105 Alternative splicing f 97.2 0.0035 7.5E-08 56.3 10.7 70 38-113 114-185 (241)
105 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00082 1.8E-08 48.5 5.0 52 40-97 2-53 (53)
106 KOG4307 RNA binding protein RB 97.1 0.0036 7.9E-08 65.9 10.3 76 39-114 867-943 (944)
107 KOG1456 Heterogeneous nuclear 97.0 0.0031 6.7E-08 62.1 8.9 81 34-118 282-363 (494)
108 KOG0112 Large RNA-binding prot 97.0 0.00081 1.8E-08 72.5 4.8 81 35-120 451-533 (975)
109 KOG0129 Predicted RNA-binding 97.0 0.0021 4.5E-08 65.7 7.3 68 32-99 363-432 (520)
110 KOG4849 mRNA cleavage factor I 96.9 0.00087 1.9E-08 65.3 4.3 74 39-112 80-156 (498)
111 KOG1548 Transcription elongati 96.9 0.0031 6.7E-08 61.5 7.6 78 37-117 263-351 (382)
112 KOG0129 Predicted RNA-binding 96.9 0.0037 7.9E-08 63.9 8.4 62 39-101 259-327 (520)
113 KOG1365 RNA-binding protein Fu 96.9 0.0013 2.8E-08 64.9 4.9 77 39-115 280-359 (508)
114 PF08952 DUF1866: Domain of un 96.9 0.0054 1.2E-07 53.4 8.0 74 36-117 24-106 (146)
115 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0054 1.2E-07 50.3 7.5 75 39-115 6-89 (100)
116 KOG3152 TBP-binding protein, a 96.8 0.00065 1.4E-08 63.7 2.4 72 38-109 73-157 (278)
117 KOG1855 Predicted RNA-binding 96.7 0.0011 2.4E-08 66.2 3.1 67 37-103 229-309 (484)
118 KOG2416 Acinus (induces apopto 96.7 0.0016 3.5E-08 67.4 4.4 77 35-116 440-520 (718)
119 KOG1456 Heterogeneous nuclear 96.7 0.035 7.5E-07 54.9 13.0 79 37-119 118-200 (494)
120 KOG1190 Polypyrimidine tract-b 96.4 0.0079 1.7E-07 59.9 7.0 79 36-117 411-490 (492)
121 KOG1996 mRNA splicing factor [ 96.3 0.013 2.7E-07 56.2 7.0 62 54-115 301-364 (378)
122 KOG0128 RNA-binding protein SA 96.1 0.0045 9.8E-08 66.6 3.8 80 39-118 736-815 (881)
123 PF08675 RNA_bind: RNA binding 96.0 0.03 6.5E-07 44.1 6.9 56 38-101 8-63 (87)
124 KOG4307 RNA binding protein RB 95.9 0.01 2.2E-07 62.6 4.8 83 33-115 428-511 (944)
125 KOG1365 RNA-binding protein Fu 95.2 0.051 1.1E-06 53.9 6.9 71 41-112 163-237 (508)
126 KOG0115 RNA-binding protein p5 95.1 0.022 4.7E-07 53.7 3.8 74 40-113 32-109 (275)
127 KOG0128 RNA-binding protein SA 95.1 0.0025 5.3E-08 68.5 -2.8 68 39-106 667-735 (881)
128 PF12718 Tropomyosin_1: Tropom 94.9 0.57 1.2E-05 40.9 12.1 85 278-362 8-92 (143)
129 PF13851 GAS: Growth-arrest sp 94.9 0.51 1.1E-05 43.6 12.4 81 282-362 25-105 (201)
130 KOG2193 IGF-II mRNA-binding pr 94.9 0.023 5E-07 56.9 3.5 72 40-118 2-76 (584)
131 KOG2068 MOT2 transcription fac 94.8 0.0086 1.9E-07 58.4 0.4 78 40-117 78-162 (327)
132 KOG2253 U1 snRNP complex, subu 94.6 0.027 5.9E-07 59.3 3.3 74 33-114 34-107 (668)
133 PRK11634 ATP-dependent RNA hel 94.4 0.73 1.6E-05 49.8 13.9 67 41-116 488-561 (629)
134 KOG0112 Large RNA-binding prot 94.4 0.0096 2.1E-07 64.5 -0.6 77 38-114 371-447 (975)
135 PF10309 DUF2414: Protein of u 94.3 0.22 4.9E-06 37.1 6.7 55 39-100 5-62 (62)
136 KOG2135 Proteins containing th 94.0 0.03 6.5E-07 56.9 2.2 72 40-117 373-445 (526)
137 PF03880 DbpA: DbpA RNA bindin 93.6 0.35 7.6E-06 37.1 7.0 67 41-115 2-74 (74)
138 PF15023 DUF4523: Protein of u 93.6 0.32 7E-06 42.2 7.3 73 36-115 83-159 (166)
139 KOG4285 Mitotic phosphoprotein 93.4 0.29 6.2E-06 47.4 7.4 68 40-114 198-266 (350)
140 PF03467 Smg4_UPF3: Smg-4/UPF3 91.7 0.26 5.7E-06 44.5 4.7 80 37-116 5-96 (176)
141 KOG2318 Uncharacterized conser 91.3 0.6 1.3E-05 48.9 7.1 81 34-114 169-302 (650)
142 PF04847 Calcipressin: Calcipr 91.0 0.74 1.6E-05 41.9 6.9 61 52-117 8-70 (184)
143 PF07576 BRAP2: BRCA1-associat 90.9 1.9 4.2E-05 35.9 8.7 67 40-107 14-81 (110)
144 PRK11637 AmiB activator; Provi 90.7 4.9 0.00011 41.3 13.3 81 287-367 50-134 (428)
145 PF10158 LOH1CR12: Tumour supp 89.5 9.2 0.0002 32.9 11.9 77 287-366 34-110 (131)
146 KOG4574 RNA-binding protein (c 88.6 0.41 9E-06 52.0 3.6 74 41-119 300-375 (1007)
147 PF05667 DUF812: Protein of un 88.3 5.7 0.00012 42.7 12.0 86 279-368 323-408 (594)
148 PRK11637 AmiB activator; Provi 88.2 9.5 0.00021 39.2 13.3 56 310-365 196-251 (428)
149 PF05266 DUF724: Protein of un 88.2 13 0.00027 34.1 12.6 61 300-363 126-186 (190)
150 PF11932 DUF3450: Protein of u 87.9 16 0.00035 34.6 13.8 72 298-369 42-113 (251)
151 KOG4660 Protein Mei2, essentia 87.7 0.81 1.8E-05 47.6 5.0 79 40-118 389-473 (549)
152 KOG0995 Centromere-associated 87.5 15 0.00032 38.9 13.9 83 287-369 442-536 (581)
153 KOG4210 Nuclear localization s 87.2 0.28 6E-06 47.8 1.3 81 38-118 87-168 (285)
154 PF03961 DUF342: Protein of un 87.1 4 8.6E-05 42.3 9.8 78 288-366 331-408 (451)
155 KOG2888 Putative RNA binding p 86.2 0.7 1.5E-05 45.3 3.3 10 79-88 159-168 (453)
156 KOG2591 c-Mpl binding protein, 85.4 1.2 2.6E-05 46.5 4.8 66 39-110 175-244 (684)
157 PF14197 Cep57_CLD_2: Centroso 85.4 12 0.00025 28.5 9.1 45 318-362 22-66 (69)
158 KOG0670 U4/U6-associated splic 84.8 3.7 8.1E-05 43.2 8.0 33 291-325 273-305 (752)
159 KOG4360 Uncharacterized coiled 83.5 20 0.00044 37.4 12.4 78 284-361 205-282 (596)
160 PF08946 Osmo_CC: Osmosensory 83.1 2.7 5.9E-05 29.1 4.2 34 287-320 8-41 (46)
161 KOG4001 Axonemal dynein light 82.3 15 0.00033 33.8 9.9 68 294-367 188-255 (259)
162 PF04111 APG6: Autophagy prote 82.2 36 0.00079 33.6 13.6 29 289-317 62-90 (314)
163 PF08614 ATG16: Autophagy prot 81.8 16 0.00035 33.3 10.3 78 289-369 107-184 (194)
164 PF04111 APG6: Autophagy prote 81.8 31 0.00067 34.1 12.9 62 289-350 55-116 (314)
165 PF10224 DUF2205: Predicted co 81.3 4.7 0.0001 31.6 5.6 39 334-372 31-69 (80)
166 PRK10884 SH3 domain-containing 80.9 16 0.00036 33.8 10.0 11 339-349 145-155 (206)
167 KOG1899 LAR transmembrane tyro 80.9 23 0.0005 37.9 11.9 104 262-365 96-217 (861)
168 smart00787 Spc7 Spc7 kinetocho 80.0 21 0.00045 35.3 11.0 62 287-348 207-268 (312)
169 KOG0995 Centromere-associated 79.8 45 0.00098 35.4 13.7 86 283-368 459-553 (581)
170 PF07888 CALCOCO1: Calcium bin 79.5 40 0.00086 35.8 13.3 9 289-297 162-170 (546)
171 KOG1962 B-cell receptor-associ 79.4 27 0.00058 32.6 10.8 60 306-365 152-211 (216)
172 COG4942 Membrane-bound metallo 79.1 44 0.00095 34.3 13.1 48 320-367 197-244 (420)
173 PF11559 ADIP: Afadin- and alp 78.8 43 0.00093 29.0 13.7 39 284-322 52-90 (151)
174 PF08317 Spc7: Spc7 kinetochor 78.8 24 0.00052 34.9 11.2 64 285-348 210-273 (325)
175 PF06785 UPF0242: Uncharacteri 78.7 33 0.00071 34.0 11.5 72 292-370 86-157 (401)
176 KOG1029 Endocytic adaptor prot 78.3 28 0.00061 38.2 11.8 31 287-317 475-505 (1118)
177 COG5570 Uncharacterized small 78.1 8.9 0.00019 27.4 5.5 51 304-354 4-54 (57)
178 PF13851 GAS: Growth-arrest sp 77.4 60 0.0013 29.9 14.0 81 289-369 53-136 (201)
179 PF02183 HALZ: Homeobox associ 76.9 6.3 0.00014 27.4 4.5 34 336-369 8-41 (45)
180 KOG0804 Cytoplasmic Zn-finger 76.5 57 0.0012 33.7 12.9 68 39-107 74-142 (493)
181 TIGR02449 conserved hypothetic 76.5 30 0.00065 26.1 8.3 63 293-358 2-64 (65)
182 KOG0240 Kinesin (SMY1 subfamil 76.4 42 0.00091 35.6 12.3 39 331-369 461-499 (607)
183 PF10168 Nup88: Nuclear pore c 76.2 25 0.00055 38.8 11.3 67 280-346 554-624 (717)
184 smart00340 HALZ homeobox assoc 76.1 4.7 0.0001 27.5 3.5 28 336-363 8-35 (44)
185 KOG2548 SWAP mRNA splicing reg 75.8 13 0.00029 38.8 8.3 14 345-358 604-617 (653)
186 KOG0933 Structural maintenance 75.7 39 0.00086 38.2 12.4 63 300-362 757-820 (1174)
187 PF04156 IncA: IncA protein; 75.6 60 0.0013 29.1 13.5 36 282-317 86-121 (191)
188 PF11767 SET_assoc: Histone ly 75.5 20 0.00044 27.0 7.3 55 50-112 11-65 (66)
189 PRK10636 putative ABC transpor 75.5 21 0.00045 38.7 10.5 74 296-369 561-634 (638)
190 PF10146 zf-C4H2: Zinc finger- 75.4 70 0.0015 30.2 12.6 55 301-355 46-103 (230)
191 PTZ00464 SNF-7-like protein; P 74.9 44 0.00095 31.1 11.0 17 334-350 76-92 (211)
192 PRK14067 exodeoxyribonuclease 74.6 11 0.00024 29.5 5.9 34 339-372 38-71 (80)
193 PRK04778 septation ring format 74.5 39 0.00084 36.2 12.1 81 284-364 282-369 (569)
194 PF07888 CALCOCO1: Calcium bin 74.3 1E+02 0.0022 32.9 14.5 29 289-317 169-197 (546)
195 PF11559 ADIP: Afadin- and alp 74.2 58 0.0013 28.2 13.3 74 289-362 71-145 (151)
196 PF05667 DUF812: Protein of un 74.1 37 0.0008 36.6 11.6 89 269-366 497-587 (594)
197 PF14282 FlxA: FlxA-like prote 73.7 24 0.00052 29.1 8.1 43 277-322 22-68 (106)
198 KOG4674 Uncharacterized conser 73.4 36 0.00079 41.0 12.1 79 294-372 326-423 (1822)
199 PF04642 DUF601: Protein of un 72.6 27 0.00058 33.2 8.9 96 274-369 186-285 (311)
200 PF09726 Macoilin: Transmembra 72.5 1.2E+02 0.0026 33.4 15.3 87 284-370 439-561 (697)
201 PF13874 Nup54: Nucleoporin co 72.5 31 0.00067 29.8 8.9 88 280-373 33-126 (141)
202 PF15070 GOLGA2L5: Putative go 72.4 41 0.00089 36.4 11.5 45 312-356 143-194 (617)
203 PF00170 bZIP_1: bZIP transcri 72.4 36 0.00078 25.0 8.1 58 312-369 5-62 (64)
204 PRK14145 heat shock protein Gr 72.1 32 0.00068 31.7 9.2 78 283-360 37-119 (196)
205 KOG0933 Structural maintenance 71.9 71 0.0015 36.3 13.2 84 281-364 674-762 (1174)
206 PRK03918 chromosome segregatio 71.6 63 0.0014 36.2 13.4 21 36-58 21-41 (880)
207 PF10186 Atg14: UV radiation r 71.1 98 0.0021 29.5 14.2 55 284-338 70-124 (302)
208 PF10186 Atg14: UV radiation r 70.3 1E+02 0.0022 29.4 14.5 61 290-350 69-129 (302)
209 PF04849 HAP1_N: HAP1 N-termin 69.8 1E+02 0.0022 30.4 12.5 88 278-365 171-266 (306)
210 PF00261 Tropomyosin: Tropomyo 69.5 50 0.0011 31.0 10.4 48 278-325 9-56 (237)
211 PF10481 CENP-F_N: Cenp-F N-te 69.3 16 0.00036 35.1 6.8 22 314-335 20-41 (307)
212 KOG0976 Rho/Rac1-interacting s 69.0 71 0.0015 35.4 12.1 86 284-369 85-195 (1265)
213 KOG2888 Putative RNA binding p 69.0 3.8 8.2E-05 40.3 2.6 14 50-63 168-181 (453)
214 COG3524 KpsE Capsule polysacch 68.9 39 0.00084 33.2 9.3 74 291-364 186-272 (372)
215 KOG0804 Cytoplasmic Zn-finger 68.9 42 0.00091 34.6 10.0 59 291-349 347-405 (493)
216 PRK09039 hypothetical protein; 68.9 40 0.00087 33.7 10.0 56 284-339 144-204 (343)
217 PRK14160 heat shock protein Gr 68.8 93 0.002 29.0 11.6 75 286-360 56-135 (211)
218 COG5185 HEC1 Protein involved 68.6 81 0.0018 32.8 11.9 92 278-369 466-577 (622)
219 PRK02224 chromosome segregatio 68.1 97 0.0021 34.8 14.0 30 327-356 563-592 (880)
220 PHA02562 46 endonuclease subun 67.8 90 0.002 32.9 13.0 16 39-56 28-43 (562)
221 PF12958 DUF3847: Protein of u 67.8 61 0.0013 25.8 8.8 54 286-342 3-56 (86)
222 PF03357 Snf7: Snf7; InterPro 67.5 44 0.00095 29.1 9.0 71 285-357 9-79 (171)
223 COG0497 RecN ATPase involved i 67.3 35 0.00075 36.4 9.4 55 284-342 325-380 (557)
224 PRK03918 chromosome segregatio 67.3 96 0.0021 34.7 13.7 7 41-47 5-11 (880)
225 PF10211 Ax_dynein_light: Axon 67.2 87 0.0019 28.5 11.0 61 296-362 125-185 (189)
226 cd07599 BAR_Rvs167p The Bin/Am 66.9 81 0.0018 29.0 11.0 82 284-365 100-182 (216)
227 PF04156 IncA: IncA protein; 66.7 97 0.0021 27.7 13.5 28 336-363 161-188 (191)
228 KOG4410 5-formyltetrahydrofola 66.4 22 0.00048 34.5 7.1 48 39-91 330-378 (396)
229 KOG4643 Uncharacterized coiled 66.1 1.2E+02 0.0026 34.6 13.4 88 280-367 498-588 (1195)
230 PF06320 GCN5L1: GCN5-like pro 65.8 82 0.0018 26.6 10.5 70 297-366 39-108 (121)
231 PF08614 ATG16: Autophagy prot 65.5 53 0.0012 29.9 9.4 62 284-352 116-177 (194)
232 PF07851 TMPIT: TMPIT-like pro 65.5 71 0.0015 31.8 10.7 6 382-387 91-96 (330)
233 PF15070 GOLGA2L5: Putative go 65.3 65 0.0014 35.0 11.2 83 288-370 206-316 (617)
234 KOG0612 Rho-associated, coiled 65.0 1E+02 0.0022 35.7 12.9 92 276-367 450-556 (1317)
235 PF05911 DUF869: Plant protein 64.7 1.2E+02 0.0027 33.7 13.4 65 278-342 597-661 (769)
236 KOG3335 Predicted coiled-coil 64.6 11 0.00024 33.9 4.4 48 299-363 100-147 (181)
237 PF14817 HAUS5: HAUS augmin-li 63.5 1.3E+02 0.0028 32.8 13.0 92 280-373 75-175 (632)
238 COG1317 FliH Flagellar biosynt 63.3 1.4E+02 0.0029 28.3 12.4 37 334-370 93-130 (234)
239 KOG0250 DNA repair protein RAD 63.2 1.1E+02 0.0024 35.1 12.6 46 284-329 221-266 (1074)
240 KOG4797 Transcriptional regula 62.8 76 0.0017 26.3 8.6 58 284-343 52-110 (123)
241 PF15619 Lebercilin: Ciliary p 62.7 77 0.0017 29.1 9.8 29 285-313 119-147 (194)
242 COG4942 Membrane-bound metallo 62.5 1.6E+02 0.0035 30.3 12.9 18 335-352 89-106 (420)
243 COG1579 Zn-ribbon protein, pos 62.4 1.5E+02 0.0031 28.3 12.9 34 336-369 120-153 (239)
244 cd07643 I-BAR_IMD_MIM Inverse 62.0 89 0.0019 29.5 10.0 77 286-369 106-184 (231)
245 PF09787 Golgin_A5: Golgin sub 62.0 1.3E+02 0.0028 31.8 12.7 91 279-369 276-381 (511)
246 PF10234 Cluap1: Clusterin-ass 61.8 1.1E+02 0.0023 29.7 10.9 16 350-365 225-240 (267)
247 PRK02224 chromosome segregatio 61.8 1.8E+02 0.0039 32.6 14.6 10 36-45 21-30 (880)
248 KOG1003 Actin filament-coating 61.8 1.3E+02 0.0029 27.6 12.4 38 333-370 165-202 (205)
249 PF10211 Ax_dynein_light: Axon 61.6 1.3E+02 0.0028 27.4 11.2 64 286-349 122-186 (189)
250 PF00261 Tropomyosin: Tropomyo 61.5 1.4E+02 0.0031 27.9 15.0 39 333-371 197-235 (237)
251 PRK11448 hsdR type I restricti 61.4 75 0.0016 37.0 11.5 23 350-372 227-249 (1123)
252 KOG0976 Rho/Rac1-interacting s 61.2 1.8E+02 0.0039 32.5 13.3 72 297-369 133-212 (1265)
253 COG4026 Uncharacterized protei 61.1 1E+02 0.0023 28.9 10.2 53 295-347 153-205 (290)
254 PRK14139 heat shock protein Gr 61.1 85 0.0019 28.6 9.7 58 296-353 37-99 (185)
255 PF13870 DUF4201: Domain of un 61.0 1.2E+02 0.0026 27.0 11.7 73 288-360 46-132 (177)
256 PF06005 DUF904: Protein of un 60.9 73 0.0016 24.4 9.7 23 345-367 44-66 (72)
257 KOG0243 Kinesin-like protein [ 60.6 1.7E+02 0.0038 33.5 13.6 59 307-365 443-512 (1041)
258 KOG0835 Cyclin L [General func 60.6 39 0.00085 33.5 7.7 9 50-58 212-220 (367)
259 COG5638 Uncharacterized conser 60.6 23 0.0005 36.0 6.3 75 33-107 140-285 (622)
260 TIGR03185 DNA_S_dndD DNA sulfu 60.3 2E+02 0.0043 31.3 14.1 18 352-369 504-521 (650)
261 PF04799 Fzo_mitofusin: fzo-li 60.3 51 0.0011 29.6 7.9 42 303-344 125-169 (171)
262 PF10146 zf-C4H2: Zinc finger- 60.2 1.5E+02 0.0033 27.9 12.8 35 285-319 12-46 (230)
263 PF09728 Taxilin: Myosin-like 59.5 1.8E+02 0.004 28.6 13.3 67 284-350 57-124 (309)
264 PF12777 MT: Microtubule-bindi 59.4 1.8E+02 0.004 28.9 12.7 31 286-316 10-40 (344)
265 PF10174 Cast: RIM-binding pro 59.3 1.8E+02 0.0039 32.5 13.4 79 287-365 318-400 (775)
266 COG5117 NOC3 Protein involved 59.2 67 0.0014 33.4 9.3 105 265-369 105-237 (657)
267 TIGR02169 SMC_prok_A chromosom 59.2 1.8E+02 0.0039 33.5 14.3 10 36-45 21-30 (1164)
268 PF05701 WEMBL: Weak chloropla 59.1 1E+02 0.0022 32.7 11.3 63 307-369 339-401 (522)
269 PRK02119 hypothetical protein; 58.8 79 0.0017 24.2 7.8 46 293-345 4-49 (73)
270 COG0419 SbcC ATPase involved i 58.7 1.6E+02 0.0035 33.3 13.6 66 300-366 554-619 (908)
271 KOG4403 Cell surface glycoprot 58.6 1.8E+02 0.0039 30.1 12.1 28 339-366 343-370 (575)
272 PF07412 Geminin: Geminin; In 58.6 25 0.00054 32.4 5.7 29 336-364 128-156 (200)
273 KOG1850 Myosin-like coiled-coi 58.1 1.8E+02 0.0039 28.8 11.7 57 303-359 78-142 (391)
274 PF03962 Mnd1: Mnd1 family; I 57.9 1.5E+02 0.0032 27.0 10.8 9 289-297 81-89 (188)
275 PRK04778 septation ring format 57.9 1.4E+02 0.003 31.9 12.3 49 298-346 383-431 (569)
276 TIGR00606 rad50 rad50. This fa 57.7 1.8E+02 0.0039 34.5 14.1 45 281-325 207-251 (1311)
277 KOG1029 Endocytic adaptor prot 57.6 1.7E+02 0.0038 32.5 12.5 48 317-364 395-451 (1118)
278 TIGR02168 SMC_prok_B chromosom 57.5 2.1E+02 0.0045 32.8 14.4 9 37-45 22-30 (1179)
279 PF15294 Leu_zip: Leucine zipp 57.4 1.6E+02 0.0035 28.6 11.3 64 285-348 133-205 (278)
280 PF15358 TSKS: Testis-specific 57.2 1.8E+02 0.0038 29.9 11.7 109 278-387 133-253 (558)
281 PHA02562 46 endonuclease subun 57.1 2.3E+02 0.005 29.8 13.8 10 307-316 332-341 (562)
282 KOG1962 B-cell receptor-associ 56.9 94 0.002 29.1 9.3 47 304-354 161-207 (216)
283 PRK01156 chromosome segregatio 56.8 1.9E+02 0.0041 32.7 13.6 12 35-46 20-31 (895)
284 KOG4438 Centromere-associated 56.6 2.4E+02 0.0053 29.0 13.0 72 298-369 216-298 (446)
285 PF09755 DUF2046: Uncharacteri 56.6 2.1E+02 0.0045 28.3 13.9 62 310-371 82-145 (310)
286 PF12777 MT: Microtubule-bindi 56.4 57 0.0012 32.5 8.5 19 350-368 298-316 (344)
287 PRK14154 heat shock protein Gr 56.2 1.3E+02 0.0028 28.0 10.1 58 296-353 57-119 (208)
288 KOG4019 Calcineurin-mediated s 56.1 8.6 0.00019 34.8 2.3 77 37-118 8-90 (193)
289 KOG0250 DNA repair protein RAD 56.0 2.1E+02 0.0046 32.9 13.3 9 64-72 40-48 (1074)
290 PF12592 DUF3763: Protein of u 55.9 72 0.0016 23.3 6.7 48 308-355 3-57 (57)
291 KOG0971 Microtubule-associated 55.8 1.7E+02 0.0037 33.1 12.2 29 341-369 491-519 (1243)
292 KOG0161 Myosin class II heavy 55.7 1.7E+02 0.0036 36.1 13.2 45 328-372 1184-1228(1930)
293 COG2900 SlyX Uncharacterized p 55.6 92 0.002 23.9 7.5 50 296-355 6-55 (72)
294 KOG0113 U1 small nuclear ribon 55.4 71 0.0015 31.3 8.4 11 53-63 153-163 (335)
295 PRK14143 heat shock protein Gr 55.2 1.8E+02 0.004 27.6 11.2 59 295-353 71-134 (238)
296 PF06810 Phage_GP20: Phage min 55.1 1.1E+02 0.0023 27.1 9.0 28 278-305 21-48 (155)
297 KOG4207 Predicted splicing fac 54.7 1E+02 0.0022 28.7 9.0 22 84-105 62-85 (256)
298 PRK10698 phage shock protein P 54.7 1.9E+02 0.004 27.1 12.7 29 334-362 100-128 (222)
299 PF03962 Mnd1: Mnd1 family; I 54.6 1.4E+02 0.003 27.2 10.0 30 287-316 65-94 (188)
300 PF15619 Lebercilin: Ciliary p 54.4 1.8E+02 0.0038 26.7 12.5 71 298-368 82-157 (194)
301 COG4487 Uncharacterized protei 54.2 2.3E+02 0.005 29.3 12.3 44 326-369 165-224 (438)
302 PRK04863 mukB cell division pr 53.8 1.7E+02 0.0038 35.2 13.0 10 80-89 85-94 (1486)
303 KOG0946 ER-Golgi vesicle-tethe 53.8 1.5E+02 0.0032 33.1 11.3 55 289-343 662-716 (970)
304 PRK14064 exodeoxyribonuclease 53.7 55 0.0012 25.3 6.1 57 296-366 8-64 (75)
305 TIGR03495 phage_LysB phage lys 53.5 1.5E+02 0.0032 25.7 9.9 74 292-365 20-100 (135)
306 PF04108 APG17: Autophagy prot 53.3 1.6E+02 0.0036 30.1 11.4 51 290-340 240-290 (412)
307 KOG4673 Transcription factor T 53.1 2.2E+02 0.0048 31.3 12.2 60 301-360 491-550 (961)
308 PRK10869 recombination and rep 53.1 76 0.0016 33.9 9.2 14 33-46 17-30 (553)
309 PF03468 XS: XS domain; Inter 53.1 17 0.00037 30.5 3.5 45 52-98 30-75 (116)
310 PF15035 Rootletin: Ciliary ro 53.0 1.8E+02 0.0039 26.4 11.4 42 278-319 68-109 (182)
311 TIGR02680 conserved hypothetic 52.8 2.7E+02 0.0059 33.3 14.4 76 284-359 875-951 (1353)
312 PF05837 CENP-H: Centromere pr 52.8 1.3E+02 0.0028 24.7 11.0 86 289-376 8-96 (106)
313 TIGR02231 conserved hypothetic 52.8 1.7E+02 0.0036 30.9 11.7 36 273-311 70-105 (525)
314 PF01519 DUF16: Protein of unk 52.6 1.3E+02 0.0028 24.7 9.1 28 288-315 50-77 (102)
315 KOG1853 LIS1-interacting prote 52.5 1.5E+02 0.0032 28.5 9.8 59 296-354 50-119 (333)
316 PRK14161 heat shock protein Gr 52.2 1.8E+02 0.0039 26.3 10.7 67 288-354 16-87 (178)
317 KOG4454 RNA binding protein (R 52.2 3.5 7.6E-05 38.4 -0.8 75 37-111 78-156 (267)
318 KOG0835 Cyclin L [General func 52.1 21 0.00046 35.3 4.4 6 83-88 176-181 (367)
319 PF09738 DUF2051: Double stran 52.1 1.3E+02 0.0028 29.7 9.9 28 288-315 109-136 (302)
320 PF05701 WEMBL: Weak chloropla 51.9 3.2E+02 0.0069 29.0 13.7 38 333-370 281-318 (522)
321 PF06120 Phage_HK97_TLTM: Tail 51.8 1.1E+02 0.0023 30.2 9.3 35 287-321 70-104 (301)
322 PF10567 Nab6_mRNP_bdg: RNA-re 51.8 28 0.0006 33.9 5.1 78 39-116 15-106 (309)
323 KOG0994 Extracellular matrix g 51.7 75 0.0016 36.7 8.9 84 290-373 1224-1329(1758)
324 KOG0107 Alternative splicing f 51.5 69 0.0015 29.0 7.2 10 40-49 38-47 (195)
325 PF09738 DUF2051: Double stran 51.5 1.6E+02 0.0034 29.1 10.4 22 340-361 140-161 (302)
326 PF04102 SlyX: SlyX; InterPro 51.4 95 0.002 23.4 7.1 35 308-342 7-41 (69)
327 KOG0996 Structural maintenance 51.3 2.2E+02 0.0048 33.1 12.5 81 287-367 387-471 (1293)
328 KOG3990 Uncharacterized conser 51.3 62 0.0014 30.9 7.2 51 288-346 229-280 (305)
329 TIGR02231 conserved hypothetic 51.3 2.3E+02 0.0051 29.8 12.6 77 286-362 73-164 (525)
330 PF09726 Macoilin: Transmembra 51.2 1.9E+02 0.0042 31.9 12.1 27 333-359 619-645 (697)
331 KOG0018 Structural maintenance 51.2 1.7E+02 0.0036 33.7 11.4 60 311-373 848-908 (1141)
332 KOG4302 Microtubule-associated 51.1 1.5E+02 0.0032 32.4 10.9 85 284-372 103-199 (660)
333 PF12269 zf-CpG_bind_C: CpG bi 51.0 65 0.0014 30.5 7.3 74 290-363 28-149 (236)
334 PF07851 TMPIT: TMPIT-like pro 50.8 87 0.0019 31.2 8.5 6 335-340 48-53 (330)
335 KOG4552 Vitamin-D-receptor int 50.7 1.4E+02 0.0031 27.7 9.1 36 306-341 61-96 (272)
336 KOG0151 Predicted splicing reg 50.6 17 0.00038 39.3 3.8 11 83-93 695-705 (877)
337 PF10475 DUF2450: Protein of u 50.1 2.5E+02 0.0053 27.2 12.4 55 278-332 75-129 (291)
338 KOG2196 Nuclear porin [Nuclear 50.0 1.9E+02 0.0042 27.5 10.2 75 284-366 127-201 (254)
339 PF10018 Med4: Vitamin-D-recep 49.7 1.8E+02 0.004 26.2 10.0 23 344-366 44-66 (188)
340 KOG3478 Prefoldin subunit 6, K 49.6 1.5E+02 0.0033 24.7 8.9 66 278-343 30-114 (120)
341 PF03310 Cauli_DNA-bind: Cauli 49.5 1.3E+02 0.0029 25.4 8.2 20 346-365 48-69 (121)
342 KOG4460 Nuclear pore complex, 49.4 3.6E+02 0.0078 28.9 13.0 57 288-344 585-644 (741)
343 COG1315 Uncharacterized conser 49.4 86 0.0019 33.0 8.4 82 283-369 409-490 (543)
344 KOG4483 Uncharacterized conser 49.2 48 0.001 33.7 6.4 58 36-99 388-446 (528)
345 KOG2193 IGF-II mRNA-binding pr 49.1 1.5 3.4E-05 44.3 -3.9 74 40-116 81-155 (584)
346 PF13815 Dzip-like_N: Iguana/D 49.1 70 0.0015 26.7 6.7 42 284-325 73-114 (118)
347 PF08182 Pedibin: Pedibin/Hym- 48.9 41 0.00088 21.9 3.9 29 289-317 2-30 (35)
348 TIGR00606 rad50 rad50. This fa 48.9 2.7E+02 0.0058 33.1 13.7 31 282-312 879-909 (1311)
349 PRK14140 heat shock protein Gr 48.9 2.1E+02 0.0046 26.2 10.2 65 290-354 36-105 (191)
350 PF11932 DUF3450: Protein of u 48.5 2.4E+02 0.0052 26.6 13.9 19 359-377 151-169 (251)
351 TIGR01280 xseB exodeoxyribonuc 48.0 1.2E+02 0.0025 22.9 7.1 27 338-364 31-57 (67)
352 COG1196 Smc Chromosome segrega 48.0 3.1E+02 0.0066 32.2 13.8 9 90-98 551-559 (1163)
353 TIGR01730 RND_mfp RND family e 47.8 1.1E+02 0.0023 29.4 8.8 26 338-363 104-129 (322)
354 PF04568 IATP: Mitochondrial A 47.7 42 0.00092 27.5 4.9 40 274-313 52-98 (100)
355 PF03961 DUF342: Protein of un 47.5 1.4E+02 0.0031 30.8 10.0 28 285-312 335-362 (451)
356 PF09731 Mitofilin: Mitochondr 47.3 3.7E+02 0.0081 28.6 13.5 33 324-356 366-398 (582)
357 KOG3580 Tight junction protein 46.8 2.1E+02 0.0046 30.9 10.9 8 62-69 85-92 (1027)
358 PRK14063 exodeoxyribonuclease 46.8 77 0.0017 24.5 6.0 55 297-365 8-62 (76)
359 PF11594 Med28: Mediator compl 46.7 89 0.0019 25.9 6.6 27 284-310 35-61 (106)
360 cd07658 F-BAR_NOSTRIN The F-BA 46.7 2.5E+02 0.0055 26.4 12.3 86 270-355 58-145 (239)
361 PRK14068 exodeoxyribonuclease 46.6 78 0.0017 24.5 6.0 31 336-366 34-64 (76)
362 cd07610 FCH_F-BAR The Extended 46.5 2.1E+02 0.0045 25.3 12.4 52 318-369 126-177 (191)
363 PF10498 IFT57: Intra-flagella 46.4 2.1E+02 0.0045 28.9 10.6 75 278-352 267-347 (359)
364 PF08654 DASH_Dad2: DASH compl 46.3 1.7E+02 0.0036 24.1 8.5 43 324-366 19-61 (103)
365 COG0724 RNA-binding proteins ( 46.2 20 0.00044 32.4 3.3 64 35-98 221-285 (306)
366 cd07598 BAR_FAM92 The Bin/Amph 46.2 2.5E+02 0.0054 26.1 11.8 49 317-365 63-112 (211)
367 PRK13729 conjugal transfer pil 46.1 81 0.0018 32.9 7.7 20 299-318 70-89 (475)
368 PF08172 CASP_C: CASP C termin 45.8 1.2E+02 0.0027 28.9 8.5 34 287-320 2-35 (248)
369 PF05130 FlgN: FlgN protein; 45.5 1.7E+02 0.0037 24.0 10.8 34 336-369 84-117 (143)
370 PRK14158 heat shock protein Gr 45.5 2.4E+02 0.0052 25.9 10.0 58 296-353 45-107 (194)
371 PRK05431 seryl-tRNA synthetase 45.4 2.4E+02 0.0052 29.0 11.2 20 344-363 81-100 (425)
372 PF04048 Sec8_exocyst: Sec8 ex 45.4 1.2E+02 0.0026 26.1 7.8 54 304-357 78-131 (142)
373 PRK00888 ftsB cell division pr 45.4 1E+02 0.0022 25.3 6.9 13 373-385 91-104 (105)
374 smart00596 PRE_C2HC PRE_C2HC d 45.2 49 0.0011 25.2 4.5 59 54-115 2-62 (69)
375 PF07106 TBPIP: Tat binding pr 44.9 1.8E+02 0.0038 25.7 9.0 22 300-321 81-102 (169)
376 PRK00083 frr ribosome recyclin 44.7 73 0.0016 29.0 6.5 61 308-371 111-172 (185)
377 PF08647 BRE1: BRE1 E3 ubiquit 44.6 1.6E+02 0.0036 23.6 13.4 68 300-367 19-93 (96)
378 KOG3650 Predicted coiled-coil 44.6 1.2E+02 0.0026 24.7 6.9 41 332-372 69-109 (120)
379 PF10174 Cast: RIM-binding pro 44.4 5E+02 0.011 29.1 14.1 38 284-321 371-408 (775)
380 PRK04863 mukB cell division pr 44.3 3.1E+02 0.0067 33.1 13.1 38 292-329 301-338 (1486)
381 COG5491 VPS24 Conserved protei 44.3 1.9E+02 0.0042 26.8 9.2 73 300-372 9-81 (204)
382 PF06160 EzrA: Septation ring 44.1 4.3E+02 0.0093 28.2 13.6 29 296-324 398-426 (560)
383 COG1196 Smc Chromosome segrega 44.0 3.9E+02 0.0085 31.3 13.9 6 84-89 598-603 (1163)
384 PRK11091 aerobic respiration c 43.9 2.7E+02 0.0058 30.6 12.1 60 307-366 105-164 (779)
385 PRK14141 heat shock protein Gr 43.9 2.6E+02 0.0057 26.0 10.1 24 330-353 75-98 (209)
386 PF10267 Tmemb_cc2: Predicted 43.8 3.8E+02 0.0082 27.5 12.8 63 284-346 219-289 (395)
387 COG0598 CorA Mg2+ and Co2+ tra 43.6 1.2E+02 0.0026 29.9 8.4 39 283-323 153-191 (322)
388 KOG2629 Peroxisomal membrane a 43.5 2.3E+02 0.0051 27.7 9.9 65 299-363 123-191 (300)
389 PF02403 Seryl_tRNA_N: Seryl-t 43.5 1.7E+02 0.0038 23.5 9.9 29 298-326 36-64 (108)
390 KOG0982 Centrosomal protein Nu 43.3 4E+02 0.0086 27.6 12.6 37 333-369 297-333 (502)
391 PF10234 Cluap1: Clusterin-ass 43.2 3.2E+02 0.0069 26.5 11.3 25 338-362 234-258 (267)
392 KOG0978 E3 ubiquitin ligase in 43.0 4.2E+02 0.0091 29.2 12.8 48 274-321 486-533 (698)
393 smart00338 BRLZ basic region l 42.9 1E+02 0.0022 22.6 6.0 40 290-329 25-64 (65)
394 PF09325 Vps5: Vps5 C terminal 42.8 2.4E+02 0.0052 25.8 10.0 63 308-370 135-197 (236)
395 COG4985 ABC-type phosphate tra 42.7 2.3E+02 0.005 26.9 9.4 76 276-354 163-242 (289)
396 KOG0977 Nuclear envelope prote 42.6 2.9E+02 0.0063 29.5 11.3 89 276-371 126-214 (546)
397 PF04108 APG17: Autophagy prot 42.6 3.1E+02 0.0068 28.1 11.5 62 294-355 258-323 (412)
398 COG4477 EzrA Negative regulato 42.5 2.9E+02 0.0062 29.4 11.0 80 285-364 355-434 (570)
399 PRK14155 heat shock protein Gr 42.5 2.7E+02 0.0059 25.9 10.0 21 333-353 60-80 (208)
400 KOG2077 JNK/SAPK-associated pr 42.4 2.3E+02 0.0049 30.4 10.2 74 282-355 327-418 (832)
401 cd09234 V_HD-PTP_like Protein- 42.2 3.5E+02 0.0077 26.7 14.2 34 333-366 265-299 (337)
402 TIGR00496 frr ribosome recycli 42.1 85 0.0018 28.3 6.5 59 309-371 103-163 (176)
403 PF10368 YkyA: Putative cell-w 42.0 2.8E+02 0.0061 25.5 10.7 82 278-363 69-152 (204)
404 PF07530 PRE_C2HC: Associated 42.0 66 0.0014 24.3 4.9 60 54-116 2-63 (68)
405 KOG1854 Mitochondrial inner me 41.7 3.6E+02 0.0078 29.3 11.8 59 284-344 397-456 (657)
406 PF06005 DUF904: Protein of un 41.5 1.6E+02 0.0035 22.5 8.3 37 281-317 15-51 (72)
407 TIGR03752 conj_TIGR03752 integ 41.3 4E+02 0.0087 27.9 11.8 41 284-324 66-106 (472)
408 KOG4643 Uncharacterized coiled 41.2 3.8E+02 0.0083 30.8 12.2 82 288-369 412-503 (1195)
409 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.1 2.2E+02 0.0048 24.1 10.9 30 284-313 17-46 (132)
410 KOG0670 U4/U6-associated splic 41.1 79 0.0017 33.7 6.7 6 367-372 381-386 (752)
411 PF14193 DUF4315: Domain of un 41.1 88 0.0019 24.7 5.6 32 295-326 5-36 (83)
412 PRK01156 chromosome segregatio 41.0 4.3E+02 0.0092 29.8 13.3 6 42-47 6-11 (895)
413 KOG4246 Predicted DNA-binding 41.0 15 0.00033 40.4 1.7 29 284-312 462-492 (1194)
414 PF10481 CENP-F_N: Cenp-F N-te 40.7 3.5E+02 0.0076 26.3 10.7 20 344-363 103-122 (307)
415 cd07605 I-BAR_IMD Inverse (I)- 40.6 3.1E+02 0.0068 25.7 10.4 74 293-369 96-182 (223)
416 PRK02793 phi X174 lysis protei 40.5 1.6E+02 0.0036 22.4 7.6 32 310-341 13-44 (72)
417 PF15294 Leu_zip: Leucine zipp 40.0 1.8E+02 0.0039 28.3 8.6 31 333-363 219-249 (278)
418 PF12761 End3: Actin cytoskele 40.0 2.1E+02 0.0045 26.4 8.6 20 343-362 174-193 (195)
419 PF06810 Phage_GP20: Phage min 40.0 2.4E+02 0.0051 24.8 8.9 34 288-321 24-57 (155)
420 PRK09039 hypothetical protein; 39.9 4E+02 0.0086 26.6 11.6 46 298-343 137-182 (343)
421 PF02646 RmuC: RmuC family; I 39.7 2.6E+02 0.0056 27.4 10.0 84 280-369 2-89 (304)
422 PF02185 HR1: Hr1 repeat; Int 39.6 1.6E+02 0.0034 22.0 8.1 27 337-363 34-60 (70)
423 COG3334 Uncharacterized conser 39.5 3.1E+02 0.0066 25.2 9.8 61 286-346 65-132 (192)
424 KOG0161 Myosin class II heavy 39.4 5.2E+02 0.011 32.1 13.9 27 81-107 635-661 (1930)
425 KOG4570 Uncharacterized conser 39.3 2.8E+02 0.006 27.9 9.8 47 317-363 331-377 (418)
426 PF00901 Orbi_VP5: Orbivirus o 39.3 4.6E+02 0.01 27.6 11.9 97 274-376 123-221 (508)
427 TIGR03752 conj_TIGR03752 integ 39.1 3.5E+02 0.0076 28.3 11.0 25 344-368 113-137 (472)
428 cd09238 V_Alix_like_1 Protein- 39.1 3.6E+02 0.0077 26.8 11.0 72 297-369 257-331 (339)
429 KOG0962 DNA repair protein RAD 39.1 5.4E+02 0.012 30.5 13.4 88 280-367 198-292 (1294)
430 KOG0994 Extracellular matrix g 38.9 1.5E+02 0.0032 34.6 8.7 24 342-365 1309-1332(1758)
431 PF10359 Fmp27_WPPW: RNA pol I 38.8 96 0.0021 32.4 7.2 31 288-318 160-190 (475)
432 cd00520 RRF Ribosome recycling 38.8 86 0.0019 28.3 6.0 59 309-371 108-168 (179)
433 PHA01750 hypothetical protein 38.1 99 0.0021 23.3 5.0 27 286-312 44-70 (75)
434 TIGR02894 DNA_bind_RsfA transc 38.1 2.7E+02 0.0059 24.8 8.7 20 301-320 107-126 (161)
435 KOG4721 Serine/threonine prote 37.8 1.8E+02 0.0038 31.6 8.7 57 296-359 408-465 (904)
436 PF00038 Filament: Intermediat 37.8 3.8E+02 0.0082 25.8 14.6 37 287-323 212-248 (312)
437 PF14662 CCDC155: Coiled-coil 37.5 3.3E+02 0.0071 25.0 10.3 69 294-362 4-72 (193)
438 PF14131 DUF4298: Domain of un 37.4 1.9E+02 0.0041 23.0 7.2 51 293-343 2-53 (90)
439 PRK14162 heat shock protein Gr 37.2 3.3E+02 0.0072 25.0 10.2 20 334-353 87-106 (194)
440 PF06156 DUF972: Protein of un 37.0 2.3E+02 0.005 23.4 7.8 36 333-368 22-57 (107)
441 KOG0979 Structural maintenance 36.8 3.8E+02 0.0083 30.7 11.5 14 88-101 484-497 (1072)
442 KOG2991 Splicing regulator [RN 36.8 3.4E+02 0.0073 26.2 9.6 37 311-347 235-271 (330)
443 PF04102 SlyX: SlyX; InterPro 36.7 1.8E+02 0.0039 21.8 7.2 39 285-323 5-43 (69)
444 PF08232 Striatin: Striatin fa 36.6 2.7E+02 0.0059 23.8 9.0 39 290-328 10-48 (134)
445 cd08915 V_Alix_like Protein-in 36.4 4.3E+02 0.0093 26.0 11.5 73 296-369 259-334 (342)
446 PF06160 EzrA: Septation ring 36.3 3.6E+02 0.0077 28.9 11.2 81 284-364 278-358 (560)
447 PF08647 BRE1: BRE1 E3 ubiquit 35.9 2.3E+02 0.0049 22.7 11.3 66 291-359 31-96 (96)
448 TIGR00634 recN DNA repair prot 35.8 3.1E+02 0.0067 29.3 10.6 21 353-373 374-394 (563)
449 KOG0971 Microtubule-associated 35.6 5.8E+02 0.013 29.1 12.4 48 310-357 373-420 (1243)
450 cd09236 V_AnPalA_UmRIM20_like 35.6 4.6E+02 0.01 26.1 13.7 53 314-366 263-315 (353)
451 PTZ00446 vacuolar sorting prot 35.5 3.5E+02 0.0077 24.8 12.9 24 333-356 81-104 (191)
452 COG5374 Uncharacterized conser 35.4 2.4E+02 0.0052 25.7 8.0 33 288-320 140-172 (192)
453 KOG1853 LIS1-interacting prote 35.3 4.2E+02 0.009 25.5 11.8 60 312-372 91-156 (333)
454 PF15035 Rootletin: Ciliary ro 35.2 3.4E+02 0.0075 24.6 9.5 51 298-348 67-117 (182)
455 PRK04406 hypothetical protein; 35.1 2.1E+02 0.0045 22.0 7.7 35 310-344 16-50 (75)
456 KOG0243 Kinesin-like protein [ 35.1 4.8E+02 0.01 30.1 12.0 28 288-315 445-472 (1041)
457 TIGR03319 YmdA_YtgF conserved 35.0 5.7E+02 0.012 27.1 13.7 91 280-370 40-138 (514)
458 KOG2129 Uncharacterized conser 35.0 2.4E+02 0.0051 29.1 8.8 20 304-323 157-176 (552)
459 TIGR00634 recN DNA repair prot 35.0 4.4E+02 0.0096 28.0 11.7 12 34-45 18-29 (563)
460 COG0233 Frr Ribosome recycling 34.8 1.3E+02 0.0029 27.4 6.4 60 309-371 114-174 (187)
461 PF10506 MCC-bdg_PDZ: PDZ doma 34.7 2E+02 0.0044 21.7 8.7 57 288-345 9-65 (67)
462 KOG4674 Uncharacterized conser 34.7 4.4E+02 0.0095 32.4 12.1 84 286-369 761-852 (1822)
463 PF04977 DivIC: Septum formati 34.7 1.2E+02 0.0026 22.7 5.5 32 286-317 19-50 (80)
464 COG1729 Uncharacterized protei 34.7 90 0.002 30.1 5.7 51 280-331 52-106 (262)
465 PRK00736 hypothetical protein; 34.7 2E+02 0.0043 21.6 6.8 45 307-354 7-51 (68)
466 KOG0979 Structural maintenance 34.6 7.4E+02 0.016 28.6 13.2 19 330-348 336-354 (1072)
467 PF09763 Sec3_C: Exocyst compl 34.5 5.4E+02 0.012 28.2 12.5 91 278-368 38-135 (701)
468 KOG0796 Spliceosome subunit [R 34.2 26 0.00056 34.5 1.9 64 136-203 256-319 (319)
469 COG1579 Zn-ribbon protein, pos 34.1 4.2E+02 0.0091 25.2 12.2 84 284-370 103-187 (239)
470 PRK04406 hypothetical protein; 33.6 2.2E+02 0.0048 21.9 8.3 34 285-318 12-45 (75)
471 PRK13676 hypothetical protein; 33.4 2.7E+02 0.0058 22.8 9.9 64 303-367 38-101 (114)
472 PF05278 PEARLI-4: Arabidopsis 33.4 3.8E+02 0.0083 25.9 9.6 77 272-348 188-264 (269)
473 PF07061 Swi5: Swi5; InterPro 33.4 2.4E+02 0.0052 22.2 8.1 65 292-365 1-65 (83)
474 PF04849 HAP1_N: HAP1 N-termin 33.4 4.8E+02 0.011 25.7 12.1 87 274-360 196-282 (306)
475 KOG0964 Structural maintenance 33.4 6.1E+02 0.013 29.2 12.2 100 267-366 247-358 (1200)
476 TIGR02338 gimC_beta prefoldin, 33.4 1.5E+02 0.0032 24.3 6.2 39 286-324 69-107 (110)
477 PRK14146 heat shock protein Gr 33.3 3.8E+02 0.0082 25.0 9.5 74 291-364 54-135 (215)
478 PRK02793 phi X174 lysis protei 33.2 2.2E+02 0.0047 21.7 6.9 43 284-326 8-50 (72)
479 PF12718 Tropomyosin_1: Tropom 33.1 3.2E+02 0.007 23.6 13.0 88 275-362 22-113 (143)
480 KOG2295 C2H2 Zn-finger protein 33.1 9.1 0.0002 40.2 -1.4 90 39-128 231-321 (648)
481 PF04799 Fzo_mitofusin: fzo-li 33.1 1.9E+02 0.0041 26.1 7.1 43 284-326 120-165 (171)
482 KOG4809 Rab6 GTPase-interactin 33.0 4.8E+02 0.01 27.9 10.8 91 277-374 331-421 (654)
483 PF03233 Cauli_AT: Aphid trans 33.0 3.1E+02 0.0066 24.5 8.2 84 266-363 75-162 (163)
484 PF15513 DUF4651: Domain of un 32.9 95 0.0021 23.2 4.3 36 54-89 9-44 (62)
485 PF10212 TTKRSYEDQ: Predicted 32.8 4.6E+02 0.01 27.8 10.8 70 287-362 444-513 (518)
486 PF13949 ALIX_LYPXL_bnd: ALIX 32.7 4.4E+02 0.0096 25.1 10.5 89 276-366 164-254 (296)
487 PLN02678 seryl-tRNA synthetase 32.6 4E+02 0.0086 27.8 10.4 76 291-366 33-108 (448)
488 PF01025 GrpE: GrpE; InterPro 32.5 98 0.0021 27.0 5.3 80 289-368 9-96 (165)
489 PRK04325 hypothetical protein; 32.4 2.3E+02 0.005 21.7 7.7 54 300-356 4-57 (74)
490 TIGR02977 phageshock_pspA phag 32.2 4.1E+02 0.0089 24.5 12.6 88 279-366 19-132 (219)
491 PLN02372 violaxanthin de-epoxi 32.2 5.8E+02 0.013 26.3 11.7 85 274-367 368-452 (455)
492 COG4487 Uncharacterized protei 32.1 6E+02 0.013 26.4 11.5 79 275-362 48-126 (438)
493 PRK10869 recombination and rep 32.0 5.6E+02 0.012 27.4 11.8 84 291-374 296-390 (553)
494 PF06818 Fez1: Fez1; InterPro 32.0 4.2E+02 0.0091 24.6 9.7 72 292-366 11-82 (202)
495 PF08397 IMD: IRSp53/MIM homol 31.7 4.1E+02 0.009 24.4 9.7 77 284-369 91-171 (219)
496 KOG2751 Beclin-like protein [S 31.6 2.9E+02 0.0062 28.6 8.8 74 285-358 144-219 (447)
497 PF05483 SCP-1: Synaptonemal c 31.4 7.5E+02 0.016 27.3 12.7 98 273-371 577-678 (786)
498 PRK00977 exodeoxyribonuclease 31.4 2.3E+02 0.005 22.1 6.5 61 314-374 13-76 (80)
499 PF10368 YkyA: Putative cell-w 31.4 2.9E+02 0.0063 25.4 8.4 91 276-366 21-124 (204)
500 KOG3647 Predicted coiled-coil 31.2 5E+02 0.011 25.2 12.2 94 275-368 89-186 (338)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.8e-19 Score=154.81 Aligned_cols=81 Identities=32% Similarity=0.585 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+-.++||||||+..+++.+|+.+|..||.|..|+|..+ +.|||||+|+++.+|++|+..|+|..|.|..|.|+++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 44789999999999999999999999999999999886 67899999999999999999999999999999999998
Q ss_pred ccCCC
Q 016463 117 TRGRK 121 (389)
Q Consensus 117 ~~~~~ 121 (389)
.....
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 76553
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.4e-18 Score=162.97 Aligned_cols=90 Identities=30% Similarity=0.539 Sum_probs=82.4
Q ss_pred ccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
+.+.-+|-+||||+.|+++|+|..|+..|..||+|+.|.||.+..+ +++|||||+|.++.+...|++..+|.+|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3445578899999999999999999999999999999999999877 999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 016463 111 RVSEVATRGRK 121 (389)
Q Consensus 111 ~V~~a~~~~~~ 121 (389)
.|++...+.-.
T Consensus 174 ~VDvERgRTvk 184 (335)
T KOG0113|consen 174 LVDVERGRTVK 184 (335)
T ss_pred EEEeccccccc
Confidence 99988665443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=5.5e-18 Score=148.11 Aligned_cols=84 Identities=33% Similarity=0.718 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ +++|||||+|.+.++|+.||..|++..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45689999999999999999999999999999999999877 89999999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.74 E-value=1.5e-16 Score=142.44 Aligned_cols=87 Identities=36% Similarity=0.597 Sum_probs=80.6
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+..++.-++|-|-||.+-|+.++|..+|++||.|..|.|+.|..| .++|||||-|....+|++|+.+|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344666789999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred EEEecccC
Q 016463 112 VSEVATRG 119 (389)
Q Consensus 112 V~~a~~~~ 119 (389)
|++|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99986543
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=9.9e-16 Score=127.74 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++||||||++.|+|+.|.++|+++|.|..|.|-.|+.+ .+.|||||+|.+.++|+.|+..++|+.++.++|.|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 445799999999999999999999999999999999999988 6899999999999999999999999999999999998
Q ss_pred ecccCCCCCCC
Q 016463 115 VATRGRKSNSG 125 (389)
Q Consensus 115 a~~~~~~~~~g 125 (389)
...-..+..+|
T Consensus 113 D~GF~eGRQyG 123 (153)
T KOG0121|consen 113 DAGFVEGRQYG 123 (153)
T ss_pred cccchhhhhhc
Confidence 76554443333
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=5.6e-15 Score=146.46 Aligned_cols=83 Identities=33% Similarity=0.490 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34558999999999999999999999999999999999855 89999999999999999999999999999999999998
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=1e-14 Score=110.04 Aligned_cols=70 Identities=34% Similarity=0.764 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 42 lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
|||+|||+++++++|.++|.+||.|..+.|..+..+..+|||||+|.+.++|+.|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999985558899999999999999999999999999999885
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=3e-14 Score=141.28 Aligned_cols=82 Identities=27% Similarity=0.550 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+.++|||+|||+.+++++|+++|..||+|..|.|+.++.+ +++|||||+|.+.++|+.||..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999998766 899999999999999999999999999999999999987
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=3.9e-14 Score=140.56 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
.....++|||++||+++|+++|+++|..||.|+.|+|+.+..+ +++|||||+|.++++|+.||..|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456789999999999999999999999999999999999776 899999999999999999999999999999999999
Q ss_pred Eecc
Q 016463 114 EVAT 117 (389)
Q Consensus 114 ~a~~ 117 (389)
++.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8865
No 10
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.2e-14 Score=123.45 Aligned_cols=81 Identities=31% Similarity=0.515 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
...++|||||||.+|.+.+|+++|.+||.|..|.|..-. ...+||||+|+++.+|+.||..-+|..++|..|+|+|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 456899999999999999999999999999999885433 257899999999999999999999999999999999987
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 543
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=5e-13 Score=132.70 Aligned_cols=83 Identities=28% Similarity=0.543 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceecc--EEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~ 114 (389)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..+ +++|||||+|.+.++|++||..|++..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3578999999999999999999999999999999998766 889999999999999999999999999876 7899999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876544
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=3.9e-13 Score=102.17 Aligned_cols=70 Identities=33% Similarity=0.723 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 42 lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
|||+|||+.+++++|..+|..||.|..|.+..++.+..+|+|||+|.+.++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987777899999999999999999999999999999874
No 13
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2e-13 Score=114.93 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.-.+.-|||.++...+|+++|.+.|..||+|+.|+|..|+.+ ..+|||+|+|++.++|++|+..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 445678999999999999999999999999999999999877 8999999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+...+.
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 987654
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=125.59 Aligned_cols=78 Identities=32% Similarity=0.680 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++||||||++.|+.+.|+.+|++||+|++..|+.|+.+ +++|||||+|.+.++|..|+.. ..-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 479999999999999999999999999999999999988 9999999999999999999995 45789999999998843
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.5e-13 Score=123.86 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
-++.++|-|.||+.++++.+|+++|.+||.|..|.|..|+.| .++|||||.|.+.++|.+||..|||.-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 357789999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
++|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=5.1e-13 Score=125.77 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.++++|+.||. |+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 47999999999999999999999999999999998764 56899999999999999996 99999999999998743
No 17
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.1e-13 Score=129.65 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
..+|...|||+.|++.||.++|+-+|+.||.|..|.|+.+..+ .+..||||+|++.++|++|+-+|++..|+.++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3577899999999999999999999999999999999999887 788999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
|+.+...
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9876554
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.3e-13 Score=127.07 Aligned_cols=84 Identities=29% Similarity=0.593 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+-+.+|+|.|||+...+-||..+|.+||.|..|.|+.+..+ +||||||+|++.++|+.|-.+|||..|.||+|.|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34566789999999999999999999999999999999987655 88999999999999999999999999999999999
Q ss_pred Eeccc
Q 016463 114 EVATR 118 (389)
Q Consensus 114 ~a~~~ 118 (389)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 88654
No 19
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.7e-14 Score=124.98 Aligned_cols=82 Identities=34% Similarity=0.751 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+..-|||||||+..||.+|..+|++||+|+.|.++.|..| +++||||+.|++..+..-|+..|||..|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34578999999999999999999999999999999999988 99999999999999999999999999999999999987
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=4.4e-12 Score=132.73 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~--G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....+|||+||++.+++++|+++|+.| |.|..|.++. +||||+|.+.++|++|+..|||..|+|+.|.|.|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999 9999998754 5999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987644
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.39 E-value=1.4e-12 Score=136.91 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..++|||+|||+++++++|+.+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..||..||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999877 799999999999999999999999999999999999987
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
+..
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.6e-12 Score=95.71 Aligned_cols=72 Identities=35% Similarity=0.704 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
+|||+|||..+++++|..+|..||.|..+.+..+. +.+.|+|||+|.+.++|+.|+..+++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 5678999999999999999999999999999999873
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.39 E-value=1.2e-12 Score=137.40 Aligned_cols=81 Identities=30% Similarity=0.624 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++|||||||+.+++++|+.+|.+||.|..|.|+.+..+ +++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 456789999999999999999999999999999999999877 8999999999999999999999999999999999986
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.2e-13 Score=121.48 Aligned_cols=88 Identities=27% Similarity=0.510 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++||||+|..++++..|...|-+||.|..|.++.|..+ +++|||||+|...++|.+||..||+..|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 455689999999999999999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 016463 115 VATRGRKSN 123 (389)
Q Consensus 115 a~~~~~~~~ 123 (389)
|+|..-...
T Consensus 87 AkP~kikeg 95 (298)
T KOG0111|consen 87 AKPEKIKEG 95 (298)
T ss_pred cCCccccCC
Confidence 998765433
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.5e-13 Score=122.50 Aligned_cols=87 Identities=31% Similarity=0.552 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
........||||.|...++-++|++.|.+||+|..++|+.|..| +++||+||.|-+.++|+.||..|+|..|++|.|+.
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 33455789999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.||..+..
T Consensus 137 NWATRKp~ 144 (321)
T KOG0148|consen 137 NWATRKPS 144 (321)
T ss_pred cccccCcc
Confidence 99987663
No 26
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.5e-12 Score=129.37 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcCh--HHHHHHHHhcCCceeccEEEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~--~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....+||||||++.+++++|..+|..||.|..|.|+.. + .+|||||+|... .++.+||..|||..++|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34579999999999999999999999999999999943 2 299999999987 789999999999999999999998
Q ss_pred ecc
Q 016463 115 VAT 117 (389)
Q Consensus 115 a~~ 117 (389)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 754
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.37 E-value=3.1e-12 Score=131.44 Aligned_cols=80 Identities=30% Similarity=0.621 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
...+|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|++|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3689999999999999999999999999999999998877 899999999999999999999999999999999999986
Q ss_pred c
Q 016463 117 T 117 (389)
Q Consensus 117 ~ 117 (389)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=3.4e-12 Score=132.89 Aligned_cols=82 Identities=24% Similarity=0.564 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.....+|||+|||+.+++++|.++|..||.|..|.|+.+..+ .++|||||+|.+.++|..||..|+|..|+|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999998765 7899999999999999999999999999999999999
Q ss_pred ecc
Q 016463 115 VAT 117 (389)
Q Consensus 115 a~~ 117 (389)
+..
T Consensus 372 a~~ 374 (509)
T TIGR01642 372 ACV 374 (509)
T ss_pred Ccc
Confidence 863
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=3.6e-12 Score=134.55 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=73.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
+|||||||+++|+++|.++|.+||.|..|.|+.+..+ +++|||||+|.+.++|+.|+..|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999999999886 8999999999999999999999999999999999999754
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=6.2e-12 Score=116.80 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.+.+|||+||++.+|+++|++||+.||.|..|.|+.+.. ..|||||+|.++++|+.|+. |+|..|.+.+|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 468999999999999999999999999999999998843 45899999999999999997 999999999999864
No 31
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.4e-11 Score=92.29 Aligned_cols=74 Identities=36% Similarity=0.740 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
+|||+|||..+++++|..+|..||.|..+.+..+..+...|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887767789999999999999999999999999999999864
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=6.1e-12 Score=132.84 Aligned_cols=83 Identities=25% Similarity=0.544 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.....+|||+||++.+++++|.++|+.||.|..|.|+.+..+.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44568899999999999999999999999999999999976789999999999999999999999999999999999998
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=2e-12 Score=114.16 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
.-+...+||||||+..++++.|.++|-+.|+|..|+|+.++.+ ..+|||||+|.++++|+-|++.|+...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 4566789999999999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred Eec
Q 016463 114 EVA 116 (389)
Q Consensus 114 ~a~ 116 (389)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 886
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=8.5e-12 Score=100.73 Aligned_cols=83 Identities=20% Similarity=0.438 Sum_probs=73.9
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.++.....-|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|.|||.|++..+|..|+..|.|..+.++.|.|
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 34445568899999999999999999999999999999976655 5789999999999999999999999999999999
Q ss_pred EEecc
Q 016463 113 SEVAT 117 (389)
Q Consensus 113 ~~a~~ 117 (389)
-+-.+
T Consensus 90 lyyq~ 94 (124)
T KOG0114|consen 90 LYYQP 94 (124)
T ss_pred EecCH
Confidence 87654
No 35
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.31 E-value=6.3e-10 Score=112.53 Aligned_cols=83 Identities=27% Similarity=0.591 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
-+..|||.+|+..|...+|..+|++||.|+..+|+.+..+ -.+||+||++.+.++|.++|..|+.+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3578999999999999999999999999999999998776 688999999999999999999999999999999999887
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
....
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.30 E-value=9.2e-12 Score=127.96 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 44689999999999999999999999999999999998776 899999999999999999997 8999999999999876
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=1e-11 Score=115.53 Aligned_cols=79 Identities=37% Similarity=0.793 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+.+++++|.++|..||.|..|.|+.+..+ ..+|||||+|.+.++|..|+..|+|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999999999744 8999999999999999999999999999999999999754
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.29 E-value=9.5e-12 Score=130.26 Aligned_cols=77 Identities=30% Similarity=0.532 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (389)
...++|||+|||+++++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|+.||..||+..|. |+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3468999999999999999999999999999999999966699999999999999999999999999885 6666554
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=1.6e-11 Score=90.94 Aligned_cols=70 Identities=36% Similarity=0.758 Sum_probs=65.2
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 44 VgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
|+|||..+++++|..+|..||.|..+.+..+..+ .++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999988764 788999999999999999999999999999998873
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.6e-11 Score=114.34 Aligned_cols=84 Identities=32% Similarity=0.533 Sum_probs=76.2
Q ss_pred hccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 31 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
......+.+++||||||+..+|+++|++.|+.||.|.+|+|..+ +||+||.|.+.++|..||..||+..|.|..+
T Consensus 156 V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~V 230 (321)
T KOG0148|consen 156 VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLV 230 (321)
T ss_pred HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEE
Confidence 33555778999999999999999999999999999999999875 6799999999999999999999999999999
Q ss_pred EEEEecccC
Q 016463 111 RVSEVATRG 119 (389)
Q Consensus 111 ~V~~a~~~~ 119 (389)
+|.|-+...
T Consensus 231 kCsWGKe~~ 239 (321)
T KOG0148|consen 231 RCSWGKEGD 239 (321)
T ss_pred EEeccccCC
Confidence 999876543
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=3.2e-11 Score=125.21 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+ .+|+++|..+|+.||.|..|+|+.+ .+|||||+|.+.++|..||..|||..|.|++|.|.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34678999999998 6999999999999999999999886 468999999999999999999999999999999998
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 7654
No 42
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.8e-11 Score=121.93 Aligned_cols=83 Identities=25% Similarity=0.479 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
+...|+|.|||+.+...+|..+|+.||.|..|.|+....++.+|||||.|....+|..|+..|||..|+||+|.|+||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 36789999999999999999999999999999999888888899999999999999999999999999999999999977
Q ss_pred cCC
Q 016463 118 RGR 120 (389)
Q Consensus 118 ~~~ 120 (389)
...
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=4e-11 Score=118.36 Aligned_cols=80 Identities=28% Similarity=0.506 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (389)
...++-||||.||.++.|++|..+|.+.|+|-.++|+.|+.+ .++|||||+|.+.++|+.||..||+.+|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356899999999999999999999999999999999999665 99999999999999999999999999985 8988887
Q ss_pred Ee
Q 016463 114 EV 115 (389)
Q Consensus 114 ~a 115 (389)
.+
T Consensus 160 ~S 161 (506)
T KOG0117|consen 160 VS 161 (506)
T ss_pred Ee
Confidence 65
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=5.7e-11 Score=123.33 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc--CCceeccEEEEEEEe
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRVSEV 115 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l--~g~~i~Gr~l~V~~a 115 (389)
|..+|||+|||+.+++++|.++|++||.|..|.|+. .+|||||+|.+.++|+.|+..| ++..|.|++|.|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 457999999999999999999999999999999886 4579999999999999999864 788999999999998
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=4.2e-11 Score=121.18 Aligned_cols=80 Identities=36% Similarity=0.704 Sum_probs=76.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
+.|||||||+.++++.|..+|+..|.|..++++.|+.+ +++||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999988 99999999999999999999999999999999999998654
Q ss_pred C
Q 016463 119 G 119 (389)
Q Consensus 119 ~ 119 (389)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.5e-11 Score=118.57 Aligned_cols=75 Identities=32% Similarity=0.681 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
-|.||||.|.+.+.|+.|+..|..||+|++|.|-+|..| +++|||||+|+-++.|+-|++.|||..++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 489999999999999999999999999999999999988 999999999999999999999999999999999996
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=2.7e-11 Score=112.68 Aligned_cols=86 Identities=30% Similarity=0.544 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
.-+++|.|||-.||.+....+|..+|-.||-|.+.+|..|+.| .+++|+||.|++..+|+.||.+|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4578999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
+.+++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8776543
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.5e-10 Score=84.33 Aligned_cols=56 Identities=36% Similarity=0.685 Sum_probs=50.9
Q ss_pred HHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 56 VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 56 L~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
|..+|++||.|..|.+.... +++|||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 589999999999999999999999999999999986
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.6e-11 Score=118.68 Aligned_cols=101 Identities=27% Similarity=0.397 Sum_probs=87.2
Q ss_pred ccccCCcchhhhhhhhhhhccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHH
Q 016463 13 TSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRS 92 (389)
Q Consensus 13 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~ 92 (389)
..++-...+.-++..........+..-..|||.||+..||++.|+.+|..||.|..|+.+.| ||||.|.+.++
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~d 305 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAERED 305 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHH
Confidence 44455556666666666555666777789999999999999999999999999999998876 99999999999
Q ss_pred HHHHHHhcCCceeccEEEEEEEecccCC
Q 016463 93 AVDAINDMNGRTIDGRVVRVSEVATRGR 120 (389)
Q Consensus 93 A~~Al~~l~g~~i~Gr~l~V~~a~~~~~ 120 (389)
|.+|++.|||..|+|..|.|.+|++...
T Consensus 306 avkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 306 AVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHHHhcCceecCceEEEEecCChhh
Confidence 9999999999999999999999988644
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.8e-10 Score=106.82 Aligned_cols=83 Identities=29% Similarity=0.563 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
+..+.|.|.-||.++|+++|+.+|...|+|+.|+++.|+.+ .+.||+||.|-.+++|++||..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44578899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
++..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8753
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.1e-10 Score=115.72 Aligned_cols=86 Identities=31% Similarity=0.586 Sum_probs=77.7
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhc-----CC-cee
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM-----NG-RTI 105 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l-----~g-~~i 105 (389)
......+.+|||.|||+++|+++|..+|.+||+|..+.||.++.| +++|.|||.|.+..+|..||... .| ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 445667799999999999999999999999999999999999988 99999999999999999999866 24 678
Q ss_pred ccEEEEEEEeccc
Q 016463 106 DGRVVRVSEVATR 118 (389)
Q Consensus 106 ~Gr~l~V~~a~~~ 118 (389)
.||.|.|..|.++
T Consensus 366 ~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 366 DGRLLKVTLAVTR 378 (678)
T ss_pred eccEEeeeeccch
Confidence 9999999988654
No 52
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.10 E-value=7.8e-10 Score=111.45 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~-~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....+|||.|||++++..+|+++|..||.|+...|..-. .++..+||||+|.+..+++.||.+ +-..|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 445679999999999999999999999999988776543 345559999999999999999996 588899999999976
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
.+.
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 553
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=4.4e-10 Score=104.36 Aligned_cols=81 Identities=32% Similarity=0.486 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.+|||-||.++++|..|..+|.+||.|..|+|+.|..+ +-+|||||.+.+-++|..||..|||..++++.|.|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34679999999999999999999999999999999999987 88999999999999999999999999999999999986
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 54
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.2e-10 Score=114.58 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce-ecc--EEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RVVRVS 113 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~-i~G--r~l~V~ 113 (389)
.+..+||||-|+..+||.+|+++|++||.|+.|.|.++..+.++|||||.|.+.+-|..||+.|||.. +.| .+|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999976 444 589999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
||.+...
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9977654
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=107.83 Aligned_cols=72 Identities=33% Similarity=0.703 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
.+|||||||.++++.+|+.+|.+||+|..|.|+.+ ||||..++...|+.||..|+|..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999887 9999999999999999999999999999999988776
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=8.4e-10 Score=84.39 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=52.9
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeeCC-C--CCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 53 EDSVRKVFD----KYGSVVAVK-IVNDR-S--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 53 e~dL~~~F~----~~G~I~~v~-v~~d~-~--~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
+++|.++|. +||.|..|. |+.++ . ++++|||||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888998 999999995 65554 3 478999999999999999999999999999999987
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=5.2e-10 Score=105.36 Aligned_cols=100 Identities=27% Similarity=0.466 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
...++||||||.+.++..+|+..|.+||+|..+.|+.+ |+||.|.-.++|..|+..|++.+|.|++++|+++.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 45689999999999999999999999999999999876 99999999999999999999999999999999998
Q ss_pred ccCCCCCCCC------CCCCCCCCCcCCCCCCC
Q 016463 117 TRGRKSNSGR------DQFRHGHRHKGRDRDNN 143 (389)
Q Consensus 117 ~~~~~~~~g~------~~~r~g~~~r~r~r~~~ 143 (389)
++-+...+.. .++..|+|.......+.
T Consensus 149 srlrtapgmgDq~~cyrcGkeghwskEcP~~~~ 181 (346)
T KOG0109|consen 149 SRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 181 (346)
T ss_pred cccccCCCCCCHHHheeccccccccccCCccCC
Confidence 8765443322 23467888876655443
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.03 E-value=2.8e-10 Score=115.10 Aligned_cols=80 Identities=35% Similarity=0.689 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~-~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
..||||||.+++++++|..+|..||.|..|.+..+. .+..+|||||+|.+.++|..|+..|||..|.|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999997 4599999999999999999999999999999999999887554
Q ss_pred C
Q 016463 119 G 119 (389)
Q Consensus 119 ~ 119 (389)
-
T Consensus 359 ~ 359 (549)
T KOG0147|consen 359 V 359 (549)
T ss_pred c
Confidence 3
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5.8e-10 Score=109.83 Aligned_cols=84 Identities=29% Similarity=0.559 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCce-ecc--EEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RVVRV 112 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~-i~G--r~l~V 112 (389)
...-++|||.||..++|.+|+.+|++||.|..|.|+.|+.+ .++|||||.|.+.++|.+|+.+|++.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44568999999999999999999999999999999999988 899999999999999999999999876 434 57888
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.+|.....
T Consensus 112 k~Ad~E~e 119 (510)
T KOG0144|consen 112 KYADGERE 119 (510)
T ss_pred cccchhhh
Confidence 88865443
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=2.2e-09 Score=111.87 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKY------------GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~------------G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~ 103 (389)
.....+|||||||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 3456899999999999999999999875 234444443 357899999999999999995 9999
Q ss_pred eeccEEEEEEE
Q 016463 104 TIDGRVVRVSE 114 (389)
Q Consensus 104 ~i~Gr~l~V~~ 114 (389)
.|.|..|.|..
T Consensus 246 ~~~g~~l~v~r 256 (509)
T TIGR01642 246 IYSNVFLKIRR 256 (509)
T ss_pred EeeCceeEecC
Confidence 99999999853
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.88 E-value=3e-09 Score=94.21 Aligned_cols=88 Identities=26% Similarity=0.469 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
...+.+..|||+||.+.+++..|.+.|+.||.|... .|+.+..| .++|||||.|.+.+.+.+|+..|+|..+..++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 345556899999999999999999999999988653 77777776 7899999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016463 112 VSEVATRGRK 121 (389)
Q Consensus 112 V~~a~~~~~~ 121 (389)
|.++......
T Consensus 171 v~ya~k~~~k 180 (203)
T KOG0131|consen 171 VSYAFKKDTK 180 (203)
T ss_pred EEEEEecCCC
Confidence 9999866543
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.88 E-value=5.1e-09 Score=95.85 Aligned_cols=85 Identities=16% Similarity=0.460 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRK----VFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~----~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (389)
+.+++..||||-||+..+..++|.. +|++||.|..|.+.. ..+.+|-|||.|.+...|-.|+..|+|..+.|++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 4456677999999999999999877 999999998887754 3378999999999999999999999999999999
Q ss_pred EEEEEecccCC
Q 016463 110 VRVSEVATRGR 120 (389)
Q Consensus 110 l~V~~a~~~~~ 120 (389)
++|.||+....
T Consensus 82 mriqyA~s~sd 92 (221)
T KOG4206|consen 82 MRIQYAKSDSD 92 (221)
T ss_pred hheecccCccc
Confidence 99999987644
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=5.6e-09 Score=104.57 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
+..|||.||++.++...|.++|+.||.|.+|+|..+..+ ++|| ||+|+++++|.+|+..|||..+.|..|.|.....+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999888 8999 99999999999999999999999999999887655
Q ss_pred CC
Q 016463 119 GR 120 (389)
Q Consensus 119 ~~ 120 (389)
..
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 43
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=2.5e-08 Score=98.52 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~-~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
....+||.|||+++.|++|+++|. +-|+|..|.+..|..++.+|+|.|+|.+++.+++|++.||.+.+.|++|.|....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999995 5799999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 016463 117 T 117 (389)
Q Consensus 117 ~ 117 (389)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=8.7e-09 Score=107.82 Aligned_cols=76 Identities=14% Similarity=0.494 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
.+|||||+|+.++++.+|..+|+.||.|.+|.|+. ++|+|||.+....+|.+|+.+|....+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 47999999999999999999999999999999977 5779999999999999999999999999999999998654
Q ss_pred C
Q 016463 119 G 119 (389)
Q Consensus 119 ~ 119 (389)
+
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 66
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8.7e-09 Score=94.94 Aligned_cols=74 Identities=35% Similarity=0.724 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecccC
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (389)
..||||+||+.+.+.+|+.+|..||.|..|.|. .||+||+|.+..+|..||..+++..|.|-.+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 468999999999999999999999999999884 4799999999999999999999999999999999987654
Q ss_pred C
Q 016463 120 R 120 (389)
Q Consensus 120 ~ 120 (389)
.
T Consensus 75 ~ 75 (216)
T KOG0106|consen 75 R 75 (216)
T ss_pred c
Confidence 4
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=90.89 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.......+||..+|+.+.+..|..+|.+| |.|..+.+..++.| .++|||||+|++++.|+.|...||+..|+|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999998 67778888788766 89999999999999999999999999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887655
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.5e-08 Score=101.47 Aligned_cols=75 Identities=27% Similarity=0.466 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecccC
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (389)
..|||| +.+|+.+|.++|+++|+|..|+||.+. | +.|||||.|.++.+|+.||..||...|.|++|+|.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468999 899999999999999999999999999 8 99999999999999999999999999999999999986543
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=2.5e-08 Score=96.59 Aligned_cols=81 Identities=26% Similarity=0.497 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..+.|||..+.++.++++|+.+|..||+|..|.+.....+ .++||+||+|.+..+...||..||-+.++|.-|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4589999999999999999999999999999999999888 799999999999999999999999999999999998764
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
.+
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 43
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=105.07 Aligned_cols=78 Identities=24% Similarity=0.555 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~----~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.++|||.||++.+|.++|..+|.++|.|..|.|...+.. .+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988776544 3559999999999999999999999999999999999
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.1e-08 Score=96.69 Aligned_cols=73 Identities=27% Similarity=0.474 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHh-cCCceeccEEEEEEEecc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND-MNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~-l~g~~i~Gr~l~V~~a~~ 117 (389)
.+|||++|...+++.+|.++|.+||+|..|.+... +++|||+|.+..+|+.|... ++...|+|.+|.|.|..+
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 69999999999999999999999999999998763 56999999999999988764 455568999999999877
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.68 E-value=2.4e-08 Score=97.27 Aligned_cols=82 Identities=30% Similarity=0.661 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..++||||+|++.++++.|.++|.+||+|..|.++.+..+ .++||+||+|++......+|. ...+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999999999988 899999999999999998888 46788999999999887
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7654
No 73
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.66 E-value=1.1e-07 Score=89.46 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+...+||||+.+.+|.+++..+|..||.|..|.|+.++.. +++||+||+|.+.+.++.|+. |+|..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 456789999999999999999999999999999999999888 899999999999999999999 999999999999998
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7665
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=6.7e-08 Score=90.88 Aligned_cols=84 Identities=24% Similarity=0.453 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....++|+|.|||+.++..+|+++|..||.+..+.|..++.+.+.|.|-|.|...++|..|+..|+|+.++|++|.+.+.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5543
No 75
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.65 E-value=1e-07 Score=88.77 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCccccCCcchhhhhhhhhhhccCCCCCCcEEEEcCCCCCC-------CHHHHHHHhh-ccCCeEEEEEee
Q 016463 2 VCREGGRQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSA-------NEDSVRKVFD-KYGSVVAVKIVN 73 (389)
Q Consensus 2 ~~~~~~r~~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~-------te~dL~~~F~-~~G~I~~v~v~~ 73 (389)
+|+|+.+|+..+..|+-.+..++.+ +...|.+...---. -+..++... .-++|...|. +||+|..+.|+.
T Consensus 26 acR~gdrcsR~h~kpt~s~t~ll~n-myq~P~~~~~~~d~-~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~ 103 (260)
T KOG2202|consen 26 ACRHGDRCSRLHEKPTFSQTVLLKN-MYQNPENSWERRDA-QGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCD 103 (260)
T ss_pred ccccccHHHHhhcccccchHHHHHH-HHhCCCCCchhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 7999999999988777777777666 44443333221000 111122111 1134444455 899999999988
Q ss_pred CCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 74 DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 74 d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+...+..|.+||.|..+++|++|+..||+..|.|++|..+++.
T Consensus 104 Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 104 NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 8777999999999999999999999999999999999998863
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.4e-08 Score=91.54 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec---cEEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~V~~ 114 (389)
+..+||||-|...-.|++++.+|..||.|.+|.+.....+.++|+|||.|.+.-+|+.||..|+|..-. ...|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999999988899999999999999999999999997643 35789999
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+....
T Consensus 98 ADTdk 102 (371)
T KOG0146|consen 98 ADTDK 102 (371)
T ss_pred ccchH
Confidence 86654
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.58 E-value=7.1e-08 Score=94.05 Aligned_cols=82 Identities=28% Similarity=0.538 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
...+||||+||+++++.+++++|.+||.|..+.++.|..+ ..+||+||.|.+++.+..++. ..-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 4569999999999999999999999999999999999888 899999999999999999988 68899999999999998
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7654
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=3.8e-08 Score=102.41 Aligned_cols=81 Identities=23% Similarity=0.501 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..+.|+|-|||+.++..+|+.+|..||.|..|.|+..... .++|||||+|-++.+|..|+.+|..+-|.||.|.++|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 3689999999999999999999999999999999887333 679999999999999999999999999999999999986
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
..
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 54
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.57 E-value=1.9e-07 Score=90.07 Aligned_cols=83 Identities=25% Similarity=0.361 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
...++.|||.|||.++|-+++.++|++||.|. .|+|..+..|+.+|=|.+.|-..+++.-|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44567899999999999999999999999876 3889999999999999999999999999999999999999
Q ss_pred EEEEEEEeccc
Q 016463 108 RVVRVSEVATR 118 (389)
Q Consensus 108 r~l~V~~a~~~ 118 (389)
..|+|+.|.-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988644
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=6.9e-07 Score=81.75 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCC-CCceEEEEEEcChHHHHHHHHhcCCceec---cEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRV 112 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d-~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~V 112 (389)
.-+||||.+||.++...+|..+|..|-..+.+.|... +.+ .-+.+|||+|.+...|.+|++.|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999876665555432 222 23479999999999999999999999997 889999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
++|+...+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999876553
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=2.5e-07 Score=91.57 Aligned_cols=77 Identities=26% Similarity=0.438 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.....|+|||.|||+++||+.|++-|..||.|..+.|+.+ ++.+| .|.|.++++|+.|+..|+|..+.|+.|.|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3456789999999999999999999999999999988443 34555 8999999999999999999999999999987
Q ss_pred e
Q 016463 115 V 115 (389)
Q Consensus 115 a 115 (389)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=6.4e-08 Score=88.15 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
....+|||+||...++++-|.++|.+.|+|..|.|..+..+..+ ||||.|.++....-|++.|||..+.+..|.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34589999999999999999999999999999999998888777 99999999999999999999999999999987654
Q ss_pred c
Q 016463 117 T 117 (389)
Q Consensus 117 ~ 117 (389)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.39 E-value=5.9e-07 Score=93.51 Aligned_cols=80 Identities=26% Similarity=0.463 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~----~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
-.+.||||||++.+++..|...|+.||+|..|+|+..+.. ...-+|||.|-+..+|+.|+..|+|..|.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 3579999999999999999999999999999999886643 356789999999999999999999999999999999
Q ss_pred Eecc
Q 016463 114 EVAT 117 (389)
Q Consensus 114 ~a~~ 117 (389)
|.+.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9844
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=4e-07 Score=92.79 Aligned_cols=76 Identities=24% Similarity=0.415 Sum_probs=67.3
Q ss_pred ccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
++...-+..+|+|-|||..+++++|..+|+.||+|..|..-.. ..|.+||+|-+..+|+.|+++|++..|.|+.|.
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3333455689999999999999999999999999999776443 678999999999999999999999999999988
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.19 E-value=1.4e-06 Score=81.17 Aligned_cols=82 Identities=29% Similarity=0.633 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
...+.||.|.|..+++.+.|-..|.+|-.....+++.+..+ +++||+||.|.+..++..|+..|+|..++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34689999999999999999999999998888999999877 99999999999999999999999999999999988655
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
.++
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 443
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.16 E-value=1.2e-05 Score=79.29 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
...|.|.||... +|.+.|..+|+-||.|..|+|..++. -.|.|.|.+...|+-|+.+|+|+.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 688999999765 89999999999999999999998754 4899999999999999999999999999999999864
Q ss_pred c
Q 016463 118 R 118 (389)
Q Consensus 118 ~ 118 (389)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 4
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.05 E-value=1.5e-05 Score=77.76 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
.....+|||-+||..+++.+|.++|.+||.|. .|+|..++.| ..+|-|.|.|.+...|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 55668999999999999999999999999885 4778888888 89999999999999999999999999999
Q ss_pred cEEEEEEEecccCC
Q 016463 107 GRVVRVSEVATRGR 120 (389)
Q Consensus 107 Gr~l~V~~a~~~~~ 120 (389)
|..|+|.+|.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998866543
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.04 E-value=3.3e-05 Score=62.86 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceec----cEEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID----GRVVRV 112 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~--~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~----Gr~l~V 112 (389)
+||-|.|||...|.++|.+++.. .|....+-++.|..+ .+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888755 467788889988777 78999999999999999999999999875 567788
Q ss_pred EEecccC
Q 016463 113 SEVATRG 119 (389)
Q Consensus 113 ~~a~~~~ 119 (389)
.+|+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8876543
No 89
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.01 E-value=1.9e-06 Score=84.39 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=55.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
.+|+|++|+..+...++.+.|..+|.|...++... ...-||.|+|........|+. ++|..+.-....+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRA 221 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhh
Confidence 68999999999999999999999999988776432 123478899999999999998 67887764433333
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=74.58 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=62.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
..-.+.++|-+|+..+.+.+|.++|.++|.+....+ ..+++||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 344688999999999999999999999999855444 3469999999999999999999999999999999
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=8.9e-06 Score=83.54 Aligned_cols=85 Identities=27% Similarity=0.560 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
......|||++||..+++..+.++...||.+....++.+..+ -++||||.+|.+.-....|+..|||..+++..|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 455789999999999999999999999999999999998876 8999999999999999999999999999999999998
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 865433
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=5.9e-05 Score=59.24 Aligned_cols=68 Identities=29% Similarity=0.409 Sum_probs=48.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 40 SSVYVGGLPYSANEDS----VRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 40 ~~lfVgnLp~~~te~d----L~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..|||.|||.+.+... |..++..|| .|..| ..+.|+|-|.+.+.|..|.+.|+|-.+.|.+|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5799999999988765 567777886 55454 236899999999999999999999999999999998
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 64
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.80 E-value=2e-05 Score=76.42 Aligned_cols=86 Identities=27% Similarity=0.520 Sum_probs=75.9
Q ss_pred CCCCCCcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 34 MTIDDESSVY-VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lf-VgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
....+..++| |++|++.++.++|..+|..+|.|..+.++.+..+ ..+|||||.|.+...+..|+.. +...+.++++.
T Consensus 179 ~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (285)
T KOG4210|consen 179 LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLR 257 (285)
T ss_pred cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccc
Confidence 3445566777 9999999999999999999999999999998877 8999999999999999999997 88999999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|.+..+...
T Consensus 258 ~~~~~~~~~ 266 (285)
T KOG4210|consen 258 LEEDEPRPK 266 (285)
T ss_pred cccCCCCcc
Confidence 988766543
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.79 E-value=8e-05 Score=75.31 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
......|-+-+||+.+|+++|.+||+.|+ |..+.+... .++..|-|||+|.++++++.|++ .+-..+..+-|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 44556777889999999999999999996 777655443 35888999999999999999999 5778888898988765
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.74 E-value=2.7e-05 Score=71.47 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=56.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
...+.+|||.||.+++||++|+.+|+.|.....++|-. +. .-+.|||+|++.+.|..|+..|+|..|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34567999999999999999999999998766666532 22 3358999999999999999999988764
No 96
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.71 E-value=7.7e-05 Score=73.42 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~----~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...|.|.||.+.+|.+.|..+|.-.|.|..+.|+.+... ...-.|||.|.+...+..|.. |.++.|-++-|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 348999999999999999999999999999988764332 244589999999999998877 67777777766664
No 97
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.70 E-value=8.5e-05 Score=75.97 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=51.1
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 54 ~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
++|.+...+||.|..|.|..+ +-|++||.|.+.+.|..|+.+|||.+|.|+.|.+.|...
T Consensus 468 edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 345555699999999888554 448999999999999999999999999999999988643
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.0001 Score=61.02 Aligned_cols=70 Identities=21% Similarity=0.460 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc-----eeccEEEEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR-----TIDGRVVRVSE 114 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~-----~i~Gr~l~V~~ 114 (389)
+.|+|.+++..++.++|..+|..||.|..|.+.... ..|||-|.+.+.|+.|+..+.-. .|.+..+.+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578898999999999999999999999999886542 38999999999999998866543 56666666654
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.58 E-value=0.00014 Score=73.53 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.....|-+.+||+.||+++|.+||+..-.|.. |.++.+..+++.|-|||.|++.+.|+.|+.. |...|+-+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35568888999999999999999998755544 6677888888999999999999999999994 778888888988755
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.57 E-value=0.00023 Score=65.61 Aligned_cols=77 Identities=13% Similarity=0.331 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~~ 114 (389)
..+...+|+.|||..++.+.|..+|.+|.....|.++.. -.+.|||+|.+...|..|...++|..|- ...+.|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 567789999999999999999999999999999998876 3469999999999999999999999987 77888876
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
+.
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 53
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00038 Score=71.45 Aligned_cols=90 Identities=29% Similarity=0.379 Sum_probs=71.5
Q ss_pred hhhhhhhccCCCCCCcEEEEcCCCCCCCH------HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHH
Q 016463 25 FNLIEERVKMTIDDESSVYVGGLPYSANE------DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98 (389)
Q Consensus 25 ~~~~~~~~~~~~~~~~~lfVgnLp~~~te------~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~ 98 (389)
.......+.....-...|+|.|+|---.. .-|..+|+++|+|..+.++.+..+..+||.|++|.+..+|+.|++
T Consensus 44 ~Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK 123 (698)
T KOG2314|consen 44 GDLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVK 123 (698)
T ss_pred hHHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHH
Confidence 34444444444556689999999864322 235688999999999999988888899999999999999999999
Q ss_pred hcCCceec-cEEEEEEE
Q 016463 99 DMNGRTID-GRVVRVSE 114 (389)
Q Consensus 99 ~l~g~~i~-Gr~l~V~~ 114 (389)
.|||..|+ ..++.|..
T Consensus 124 ~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 124 SLNGKRLDKNHTFFVRL 140 (698)
T ss_pred hcccceecccceEEeeh
Confidence 99999987 66777753
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=0.00025 Score=73.08 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=52.5
Q ss_pred HHHHHhhccCCeEEEEEeeC-CCC---CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 55 SVRKVFDKYGSVVAVKIVND-RST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 55 dL~~~F~~~G~I~~v~v~~d-~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+++..+++||.|..|.|+.. ... ...|-.||+|.+.++|+.|+.+|+|.+|.|+.|...|..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34555688999999999887 322 467889999999999999999999999999999888754
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.00034 Score=67.81 Aligned_cols=79 Identities=22% Similarity=0.478 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEEeeCCCC--CCce--EEEEEEcChHHHHHHHHhcCCceecc
Q 016463 38 DESSVYVGGLPYSANEDS----V--RKVFDKYGSVVAVKIVNDRST--RGKC--YGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~d----L--~~~F~~~G~I~~v~v~~d~~~--~~kG--~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
...-+||-+||+.+-.++ | .++|++||.|..|.|...... ..-+ -+||+|.+.++|..||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 346789999998865444 3 579999999998877543211 1112 24999999999999999999999999
Q ss_pred EEEEEEEec
Q 016463 108 RVVRVSEVA 116 (389)
Q Consensus 108 r~l~V~~a~ 116 (389)
+.|+..+-.
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998754
No 104
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.0035 Score=56.35 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec--cEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVS 113 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~--Gr~l~V~ 113 (389)
....|.|.+||+..+|++|+++...-|.|+...+..| |++.|+|...++.+-||..|+...+. |-...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 3478999999999999999999999999999999877 69999999999999999999887764 4444443
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.17 E-value=0.00082 Score=48.54 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHH
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al 97 (389)
+.|-|.|.++...+. +..+|..||+|..+.+.. ..-+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 567788998777654 555899999999988862 2349999999999999985
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.06 E-value=0.0036 Score=65.88 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=67.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~-~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
++.|-+-|+|+.++-++|.+||..|-.+- .|.+-.+..+...|-|.|.|++.++|..|...|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788889999999999999999997553 56777777778999999999999999999999999999999998864
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.02 E-value=0.0031 Score=62.08 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+++.+.|-+|... ++-+.|..+|..||.|..|+++.. ..|.|.|++.+..+.+.|+..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 44577899999999886 567889999999999999999886 4579999999999999999999999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.+++..
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 887643
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.98 E-value=0.00081 Score=72.45 Aligned_cols=81 Identities=23% Similarity=0.483 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc--EEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V 112 (389)
..-+.+.+||++|+.++....|..+|..||.|..|.+-. ..-||||.|++...|+.|+..|-|..|+| ++|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 355678999999999999999999999999999987743 34599999999999999999999999985 67999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.|+.....
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99866543
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0021 Score=65.69 Aligned_cols=68 Identities=31% Similarity=0.492 Sum_probs=61.4
Q ss_pred ccCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCC-CCCceEEEEEEcChHHHHHHHHh
Q 016463 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRS-TRGKCYGFVTFGNPRSAVDAIND 99 (389)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~I~~v~v~~d~~-~~~kG~aFVeF~~~~~A~~Al~~ 99 (389)
.+...++..|||||+||--++.++|..+|. -||.|..+-|-.|.. ..++|-|=|+|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 466789999999999999999999999998 699999999988844 47999999999999999999984
No 110
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.94 E-value=0.00087 Score=65.28 Aligned_cols=74 Identities=19% Similarity=0.400 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
..++|||||-|++|.++|.+.+...| .|..+++..++.+ .++|||+|...+..+.++.+..|.-+.|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 46899999999999999998888776 5566777777666 89999999999999999999999999999875555
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.89 E-value=0.0031 Score=61.55 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCC----CCCCH-------HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee
Q 016463 37 DDESSVYVGGLP----YSANE-------DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (389)
Q Consensus 37 ~~~~~lfVgnLp----~~~te-------~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i 105 (389)
...++|.|.||- +..+. ++|.+...+||.|..|.|+-. ++.|.+-|.|.+.++|..||..|+|..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 345788888873 22342 345566789999999988632 4678999999999999999999999999
Q ss_pred ccEEEEEEEecc
Q 016463 106 DGRVVRVSEVAT 117 (389)
Q Consensus 106 ~Gr~l~V~~a~~ 117 (389)
+|+.|...+...
T Consensus 340 dgRql~A~i~DG 351 (382)
T KOG1548|consen 340 DGRQLTASIWDG 351 (382)
T ss_pred cceEEEEEEeCC
Confidence 999999887543
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0037 Score=63.94 Aligned_cols=62 Identities=29% Similarity=0.538 Sum_probs=49.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC--CCC--CCce---EEEEEEcChHHHHHHHHhcC
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND--RST--RGKC---YGFVTFGNPRSAVDAINDMN 101 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d--~~~--~~kG---~aFVeF~~~~~A~~Al~~l~ 101 (389)
.++||||+||++++|+.|...|..||.+ .|.++.. ..+ .++| |+|+.|+++.....-|.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 4799999999999999999999999975 4455522 122 4667 99999999999888776543
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.87 E-value=0.0013 Score=64.88 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEE--EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVA--VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~--v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+|-+.+||+.++.++|.+||..|. .|.. |+|+.+..++..|-|||+|.+.+.|..|....+.+....+-|.|--+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 56788899999999999999999886 3444 89999999999999999999999999999988888788898888654
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.85 E-value=0.0054 Score=53.39 Aligned_cols=74 Identities=28% Similarity=0.454 Sum_probs=52.5
Q ss_pred CCCCcEEEEcCCCC-----CCCH----HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 36 IDDESSVYVGGLPY-----SANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 36 ~~~~~~lfVgnLp~-----~~te----~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
-++..||.|.=+.+ .... ..|.+.|..||.|.-|+++.+ --+|+|.+-..|.+|+. |+|..|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 35556776654441 1222 257788999999998888764 67999999999999999 8999999
Q ss_pred cEEEEEEEecc
Q 016463 107 GRVVRVSEVAT 117 (389)
Q Consensus 107 Gr~l~V~~a~~ 117 (389)
|+.|.|.+..+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987543
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.83 E-value=0.0054 Score=50.26 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=50.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-EeeC-------CCCCCceEEEEEEcChHHHHHHHHhcCCceeccEE-
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK-IVND-------RSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV- 109 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~-v~~d-------~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~- 109 (389)
.+.|.|-++|+.. ...|..+|++||.|.... +..+ .......+..|.|.++.+|.+||. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4567788999884 466778899999998764 1000 111234589999999999999999 5999999864
Q ss_pred EEEEEe
Q 016463 110 VRVSEV 115 (389)
Q Consensus 110 l~V~~a 115 (389)
+-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446555
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.83 E-value=0.00065 Score=63.71 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---------CCce----EEEEEEcChHHHHHHHHhcCCce
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---------RGKC----YGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~---------~~kG----~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
....||+++||+.....-|+++|+.||.|-.|.|...... .... -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4579999999999999999999999999999988654321 1111 27899999999999999999999
Q ss_pred eccEE
Q 016463 105 IDGRV 109 (389)
Q Consensus 105 i~Gr~ 109 (389)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.72 E-value=0.0011 Score=66.22 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC---CC---CC--------CceEEEEEEcChHHHHHHHHhcCC
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND---RS---TR--------GKCYGFVTFGNPRSAVDAINDMNG 102 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d---~~---~~--------~kG~aFVeF~~~~~A~~Al~~l~g 102 (389)
-+.++|.+.|||.+-.-+.|.++|+.||.|..|.||.. .. +. .+-+|||+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999999888999999999999999999876 21 11 144699999999999999997754
Q ss_pred c
Q 016463 103 R 103 (389)
Q Consensus 103 ~ 103 (389)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 118
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.72 E-value=0.0016 Score=67.37 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee---ccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i---~Gr~l 110 (389)
.....+.|||.||-.-.|.-.|+.++.+ +|.|..++|- +.+..|||.|.+.++|.+.+.+|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4566789999999999999999999995 5666666442 3456899999999999999999999975 57889
Q ss_pred EEEEec
Q 016463 111 RVSEVA 116 (389)
Q Consensus 111 ~V~~a~ 116 (389)
.|.|+.
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 998874
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.67 E-value=0.035 Score=54.91 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCcEEEEcCC--CCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-c-EEEEE
Q 016463 37 DDESSVYVGGL--PYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-G-RVVRV 112 (389)
Q Consensus 37 ~~~~~lfVgnL--p~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-G-r~l~V 112 (389)
.++..|.+.=| -+.||.+.|..+....|+|..|.|.... ---|.|+|++.+.|++|...|||..|. | ..|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc----ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34445554434 4568999999999999999999887652 236999999999999999999999975 4 47999
Q ss_pred EEecccC
Q 016463 113 SEVATRG 119 (389)
Q Consensus 113 ~~a~~~~ 119 (389)
+||++..
T Consensus 194 eyAkP~r 200 (494)
T KOG1456|consen 194 EYAKPTR 200 (494)
T ss_pred EecCcce
Confidence 9998754
No 120
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.43 E-value=0.0079 Score=59.95 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccE-EEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l~V~~ 114 (389)
.+|..+|...|+|+.++|++|..+|..-|.......... +.+-+|++.+.+.++|..|+-.|+.+.+++. .|+|.|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 467789999999999999999999999886644332211 2334999999999999999999999999865 899998
Q ss_pred ecc
Q 016463 115 VAT 117 (389)
Q Consensus 115 a~~ 117 (389)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 764
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.25 E-value=0.013 Score=56.21 Aligned_cols=62 Identities=35% Similarity=0.453 Sum_probs=50.8
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCC--CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 54 DSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 54 ~dL~~~F~~~G~I~~v~v~~d~~~--~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
+++.....+||.|..|.|.....- .----.||+|...++|.+|+-.|||..|+|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 456778899999999887766433 23345899999999999999999999999999887664
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.13 E-value=0.0045 Score=66.59 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=73.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
...|||.|+|+..|.+.|+.+|..+|.+..+.++..+.++++|.|||.|.++.++..++..+++..+.-..+.|.++.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999998888888888886653
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.02 E-value=0.03 Score=44.11 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~ 101 (389)
....+||+ +|..+...||..+|+.||.| .|.++.+ .-|||.....+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 34566776 99999999999999999987 4555554 379999999999999998775
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.85 E-value=0.01 Score=62.64 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=68.4
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+.....+.+|||-.||..+++.++.++|...-.|+. |.|.....++..+.|||.|..++++..|+..-+-+.++-+.|+
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 444566789999999999999999999988766765 7776666778889999999999999888886666667778899
Q ss_pred EEEe
Q 016463 112 VSEV 115 (389)
Q Consensus 112 V~~a 115 (389)
|.-.
T Consensus 508 v~si 511 (944)
T KOG4307|consen 508 VDSI 511 (944)
T ss_pred eech
Confidence 8744
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.24 E-value=0.051 Score=53.94 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=56.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc----cCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 41 SVYVGGLPYSANEDSVRKVFDK----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~----~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.|-..+||+++++.++..||.. -|....|.++....++..|-|||.|..+++|+.|+.+ |...|+-|-|.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3445699999999999999974 2345677778777889999999999999999999985 555566555544
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.12 E-value=0.022 Score=53.74 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=62.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc----eeccEEEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVVRVS 113 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~----~i~Gr~l~V~ 113 (389)
..|||.||+..++-+.|...|..||+|....++.|..++..+-++|.|...-.|.+|+..+.-. .+.++++-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7899999999999999999999999999988888888888899999999999999999876422 2345555554
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.11 E-value=0.0025 Score=68.54 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~-~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
-.++||.||++.+.+.+|...|..+|.|..+.+.... .+..+|+|||+|..++++.+||....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3689999999999999999999999988887776333 3378999999999999999999966666555
No 128
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.95 E-value=0.57 Score=40.87 Aligned_cols=85 Identities=26% Similarity=0.354 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
+-+..+..-+.+..++.+++.+...++.+|..|++|++.||..+..+..--..-+..|-...+.+.++-..+-++...|.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 34555667788899999999999999999999999999999998887766666666666667777777777777777777
Q ss_pred HHHHH
Q 016463 358 EFQSI 362 (389)
Q Consensus 358 ~~~~~ 362 (389)
+|...
T Consensus 88 ele~a 92 (143)
T PF12718_consen 88 ELEEA 92 (143)
T ss_pred HHHHH
Confidence 77543
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.94 E-value=0.51 Score=43.58 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 282 SIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQS 361 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
-+.....|+.+|..|....+..++.+.+++.+++.|..-+..|.+-...=+..|....+-...+.....+|+.++++|+.
T Consensus 25 NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999999999999877666666655555566666666666667777777777776665
Q ss_pred H
Q 016463 362 I 362 (389)
Q Consensus 362 ~ 362 (389)
|
T Consensus 105 L 105 (201)
T PF13851_consen 105 L 105 (201)
T ss_pred H
Confidence 5
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.90 E-value=0.023 Score=56.93 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce-eccEEEEEEEec
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVSEVA 116 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~--G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~-i~Gr~l~V~~a~ 116 (389)
..+|+|||.+.++..+|..+|... +.-..+.| ..||+||.+.+...|..|+..++|.. +.|.++.|+.+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999753 11112222 34799999999999999999999875 789999998875
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
+.
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.83 E-value=0.0086 Score=58.41 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCC-CHHHHH--HHhhccCCeEEEEEeeCCC--C--CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 40 SSVYVGGLPYSA-NEDSVR--KVFDKYGSVVAVKIVNDRS--T--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 40 ~~lfVgnLp~~~-te~dL~--~~F~~~G~I~~v~v~~d~~--~--~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.-+||-+|+... .+..|+ ..|.+||.|..|.+..+.. . -...-+||+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888998775 445554 5799999999998877652 1 23345899999999999999999999999999877
Q ss_pred EEecc
Q 016463 113 SEVAT 117 (389)
Q Consensus 113 ~~a~~ 117 (389)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66543
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.59 E-value=0.027 Score=59.31 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=64.6
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
..+.++..+|||+|+...+..+-+..+...||.|..+.... |||..|.....+..|+..++-..++|..+.+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 44466778999999999999999999999999887776543 9999999999999999999999999988877
Q ss_pred EE
Q 016463 113 SE 114 (389)
Q Consensus 113 ~~ 114 (389)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 65
No 133
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.44 E-value=0.73 Score=49.84 Aligned_cols=67 Identities=4% Similarity=0.083 Sum_probs=49.9
Q ss_pred EEEEcCC--CCCCCHHHHHHHhhccCCe-----EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 41 SVYVGGL--PYSANEDSVRKVFDKYGSV-----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 41 ~lfVgnL--p~~~te~dL~~~F~~~G~I-----~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
++|| ++ -..++..+|..++..-+.| -.|.|..+ |.||+... ..|...+..|++..+.|+.|.|+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 4555 44 4468888888888766544 35666443 89999874 56888889999999999999999
Q ss_pred Eec
Q 016463 114 EVA 116 (389)
Q Consensus 114 ~a~ 116 (389)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.37 E-value=0.0096 Score=64.48 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.+.+||+|||+..+++.+|+..|..||.|..|.|-.-.-+....||||.|.+...+-.|...+.+..|..-.+.+-+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45799999999999999999999999999999886554333445999999999999999999998887644444443
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.29 E-value=0.22 Score=37.09 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=44.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKY---GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~---G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l 100 (389)
+..|+|.|+. +.+.++|+.+|..| .....|.++.|. -|-|.|.+...|..||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4689999986 57778899999998 135688888773 5889999999999999865
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.05 E-value=0.03 Score=56.89 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=57.8
Q ss_pred cEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 40 SSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 40 ~~lfVgnLp~~~-te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
+.|-+.-.|+.. +-.+|..+|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 444444455554 56789999999999999988543 2368999999999988877 689999999999999766
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.57 E-value=0.35 Score=37.12 Aligned_cols=67 Identities=18% Similarity=0.391 Sum_probs=40.0
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 41 SVYVG-GLPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 41 ~lfVg-nLp~~~te~dL~~~F~~~G-----~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
++||. +--..++..+|..+|...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|++|.|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 45552 2234578889988887764 4557777554 99998875 588999999999999999999986
Q ss_pred e
Q 016463 115 V 115 (389)
Q Consensus 115 a 115 (389)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.57 E-value=0.32 Score=42.21 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCCCcEEEEcCCCCCCC-HHH---HHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 36 IDDESSVYVGGLPYSAN-EDS---VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~t-e~d---L~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
.++-.+|.|.=|..++. .++ +...++.||+|..|.++. +..|.|.|.+..+|-.|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 34557888877666642 233 455678899999998864 35799999999999999999875 56677777
Q ss_pred EEEe
Q 016463 112 VSEV 115 (389)
Q Consensus 112 V~~a 115 (389)
+.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7663
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=0.29 Score=47.37 Aligned_cols=68 Identities=26% Similarity=0.364 Sum_probs=50.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEE-EEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-VRVSE 114 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~-l~V~~ 114 (389)
+=|-|-++|+... ..|..+|.+||.|+..... . .-.|-+|-|.+.-+|.+||. .+|+.|+|.. |-|.-
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~----ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-S----NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC-C----CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 3444557776543 5677889999999876544 2 22389999999999999999 5999999864 34443
No 140
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.71 E-value=0.26 Score=44.49 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCceecc--
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDK-YGSV---VAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-- 107 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I---~~v~v~~d~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-- 107 (389)
....+|.|.+||+++|++++...+.. ++.. ..+.-...... ....-|||.|.+.+++...+..++|+.|-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34578999999999999998887666 6655 34432222222 234569999999999999999999987642
Q ss_pred ---EEEEEEEec
Q 016463 108 ---RVVRVSEVA 116 (389)
Q Consensus 108 ---r~l~V~~a~ 116 (389)
.+..|++|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 245666653
No 141
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.6 Score=48.87 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeeCCCCC----------C-------------------
Q 016463 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRSTR----------G------------------- 79 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~dL~~~F~~~----G~I~~v~v~~d~~~~----------~------------------- 79 (389)
..-+....|-|+||.|. +...+|.-+|..| |.|..|.|+....|+ +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 33567789999999997 6888999988776 589999887643210 1
Q ss_pred -------------------ceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 80 -------------------KCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 80 -------------------kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.-||.|+|.+...|...+..++|..|...-..+.+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 13799999999999999999999999755444443
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.03 E-value=0.74 Score=41.92 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=44.9
Q ss_pred CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CceeccEEEEEEEecc
Q 016463 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVSEVAT 117 (389)
Q Consensus 52 te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~V~~a~~ 117 (389)
....|+.+|..|+.+..+.+... -+-..|.|.+.+.|..|...|+ +..+.|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999998887766542 3468899999999999999999 9999999999998743
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.88 E-value=1.9 Score=35.88 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
..+.+...|+.++-++|..+.+.+- .|..++|+.+.. ..+-.+.+.|.+...|......+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444555566667765555553 566788887643 366789999999999999999999998763
No 144
>PRK11637 AmiB activator; Provisional
Probab=90.66 E-value=4.9 Score=41.31 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA----ERLKSCEREFQSI 362 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 362 (389)
+.++.++.+++.++.+.+..+.+++++...|+..+..+.+.-..-+..|..+.+...+++..- +.|...+..|..+
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555445555555555555555555444444444455555555554444433 3444444455554
Q ss_pred HHHHh
Q 016463 363 VDAAM 367 (389)
Q Consensus 363 ~~~~~ 367 (389)
+.++-
T Consensus 130 lra~Y 134 (428)
T PRK11637 130 LDAAF 134 (428)
T ss_pred HHHHH
Confidence 44443
No 145
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=89.51 E-value=9.2 Score=32.90 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
-.+..++++-.+-+..++.. |.++.+.+|-.++..-..-.+||+...|.-.++..|++-...|..|.--|+.+|..+
T Consensus 34 ~R~Q~HL~~cA~~Va~~Q~~---L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~i 110 (131)
T PF10158_consen 34 SRYQEHLNQCAEAVAFDQNA---LAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSI 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677766666555543 678899999999999999999999999999999999999999999999998888654
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.56 E-value=0.41 Score=52.03 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=61.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee--ccEEEEEEEeccc
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--DGRVVRVSEVATR 118 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i--~Gr~l~V~~a~~~ 118 (389)
+.++-|.+-..+-.-|..+|..||.|..++...+-. .|.|+|...+.|..|+.+++|+.+ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 444556666777788999999999999998876533 899999999999999999999985 4888999998764
Q ss_pred C
Q 016463 119 G 119 (389)
Q Consensus 119 ~ 119 (389)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 147
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.29 E-value=5.7 Score=42.68 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (389)
.+..-+....++++|..+...+++-+..+..|+...++++.++..........+.++.-..+.+.-|-+--+.+ ..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni----~k 398 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI----AK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HH
Confidence 34556777889999999999999999999999999999999988887777777777776666666666655555 56
Q ss_pred HHHHHHHHhh
Q 016463 359 FQSIVDAAMT 368 (389)
Q Consensus 359 ~~~~~~~~~~ 368 (389)
||.+|++.+.
T Consensus 399 L~~~v~~s~~ 408 (594)
T PF05667_consen 399 LQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHH
Confidence 7888877654
No 148
>PRK11637 AmiB activator; Provisional
Probab=88.22 E-value=9.5 Score=39.16 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
|+.....++.++......-.+++..+.+|.+..-........|+..++.|+.++..
T Consensus 196 l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 196 QKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444555556666555555444555555555555555553
No 149
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.18 E-value=13 Score=34.13 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
..+.+.++.+|+.+...|+.+.+..++.--.-.+.+..|..|-.++ ++.+..+|.++|+++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l---~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL---KEEIENAELEFQSVA 186 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 3444677777777777777766666655555557777777765554 456677888888875
No 150
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.91 E-value=16 Score=34.65 Aligned_cols=72 Identities=13% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
++++.-..+..+|+.++..|+.++...+....+-+.+|..+.+.+..++.-.+.+...+++|--++...+.+
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666777778888888888888888888999999999999999999998888888877766554
No 151
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.72 E-value=0.81 Score=47.65 Aligned_cols=79 Identities=10% Similarity=0.244 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcee---c-cEEEEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---D-GRVVRVS 113 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~-~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i---~-Gr~l~V~ 113 (389)
+++-|-|+|...|...|...-. ..|.-..+.++.|-.+ ...|||||.|.+.+++..+++++||+.. + .+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3444444444444333333211 2455556777777666 6889999999999999999999999863 3 4456666
Q ss_pred Eeccc
Q 016463 114 EVATR 118 (389)
Q Consensus 114 ~a~~~ 118 (389)
||.-.
T Consensus 469 YArIQ 473 (549)
T KOG4660|consen 469 YARIQ 473 (549)
T ss_pred hhhhh
Confidence 76544
No 152
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.48 E-value=15 Score=38.89 Aligned_cols=83 Identities=24% Similarity=0.280 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHH--------HHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ----KQLTKLYKCFIQVN--------EYAERLKS 354 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~ 354 (389)
--|.+.++.++..++++.+...+++-+.+++++.....++-+..=+ ..+.+|.+.+++++ +--+.+++
T Consensus 442 ~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s 521 (581)
T KOG0995|consen 442 ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKS 521 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667666666666666666555444443332221 44555555554433 34456666
Q ss_pred HHHHHHHHHHHHhhh
Q 016463 355 CEREFQSIVDAAMTE 369 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~ 369 (389)
.|.+|+.+|++.+.|
T Consensus 522 ~e~el~~~~~~~~ee 536 (581)
T KOG0995|consen 522 IELELDRMVATGEEE 536 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.22 E-value=0.28 Score=47.81 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..+++||+++.+.+.+.++..+|..+|.+..+.+...... .++||++|.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3678999999999999989999999998777766654444 789999999999999999999543356777776666554
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 154
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=87.12 E-value=4 Score=42.29 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.+..++..|++.+++.+..+.+|++...+|+.... ..++......++.+|.+.+.++.+.-+.|+....+|+..+...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555556666666555555444 5556777888888999998888888888877777777777665
No 155
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.17 E-value=0.7 Score=45.26 Aligned_cols=10 Identities=0% Similarity=0.335 Sum_probs=5.6
Q ss_pred CceEEEEEEc
Q 016463 79 GKCYGFVTFG 88 (389)
Q Consensus 79 ~kG~aFVeF~ 88 (389)
..||-||-|.
T Consensus 159 alGFmYiRYt 168 (453)
T KOG2888|consen 159 ALGFMYIRYT 168 (453)
T ss_pred hheeeEEeec
Confidence 3456666664
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.42 E-value=1.2 Score=46.50 Aligned_cols=66 Identities=17% Similarity=0.343 Sum_probs=50.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC--ceeccEEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVV 110 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~--~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g--~~i~Gr~l 110 (389)
-|.|.+..||..+-.++|+.+|.. |-++..|.+..+. -=||+|++..+|+.|+..|.. +.|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 366778899999999999999975 6778888876552 469999999999999876542 23455544
No 157
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.37 E-value=12 Score=28.52 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 318 EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+-..+.-+.|+..|-..+++|+-++....+..+.+....+||+.+
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466778889999999999999999888888888888887764
No 158
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=84.82 E-value=3.7 Score=43.15 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
.++..|+|+-. ...+..|.+..++++.+...+.
T Consensus 273 ~~~~~ieed~~--~~~~~il~k~~~~~~qq~~~~q 305 (752)
T KOG0670|consen 273 AESEIIEEDRR--KREEEILEKYKQKGEQQGSGAQ 305 (752)
T ss_pred hhhhhhhHHHH--HHHHHHHHHHHhhhhhcccccc
Confidence 33344444333 3334446667777776444443
No 159
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.53 E-value=20 Score=37.42 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQS 361 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
+..++...++..|.+.++.|-.+..-+|....+|+.++.-+.|.--+..+++.-|-..+.-.++--+-|-..++|||-
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999988888877776666655555555555555555553
No 160
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=83.14 E-value=2.7 Score=29.09 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
..|..+.+.||.+++.-.+++++||+|.+.|-++
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788889999999999999999998888664
No 161
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=82.30 E-value=15 Score=33.81 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
+-|+.+....+....+|..++..++--+.++++.++.+.-.+.|-+ ++.++.||..++.|++-+..++
T Consensus 188 ~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~------~eei~fLk~tN~qLKaQLegI~ 255 (259)
T KOG4001|consen 188 TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKM------KEEIEFLKETNRQLKAQLEGIL 255 (259)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhcc
Confidence 3445566666777777778888888888889999999988888755 5788899999999998877654
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.16 E-value=36 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+..++..++...++..+++.+|+.+...|
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 163
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.81 E-value=16 Score=33.30 Aligned_cols=78 Identities=29% Similarity=0.357 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
+..++......+...+.++..|+.+...|+..+....|+..-=++.+.-|+=.|..+.+ +++..+.|=+.||+-.|.
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~---k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE---KLRKLEEENRELVERWMQ 183 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444455666666666666777777777777766666666777777766666554 555555666666777665
Q ss_pred h
Q 016463 369 E 369 (389)
Q Consensus 369 ~ 369 (389)
.
T Consensus 184 ~ 184 (194)
T PF08614_consen 184 R 184 (194)
T ss_dssp H
T ss_pred H
Confidence 4
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.78 E-value=31 Score=34.10 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
++.+...+.+.+++.+++..+|.+...+||.++.........-......++..+.++.+..+
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444333333333444444444444444333
No 165
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=81.35 E-value=4.7 Score=31.62 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.|.-|..-+..|++.+++|+..++=||..|+.+|...-+
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566667889999999999999999999999998766
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.92 E-value=16 Score=33.79 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016463 339 YKCFIQVNEYA 349 (389)
Q Consensus 339 ~~~~~~~~~~~ 349 (389)
.+.+.+++...
T Consensus 145 ~~~l~~~~~~~ 155 (206)
T PRK10884 145 KNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 167
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.86 E-value=23 Score=37.92 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=65.9
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHH----HHHHHhhhH
Q 016463 262 REFSSNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQ----KRSKKL---EEAL----INAKKLSSH 330 (389)
Q Consensus 262 ~~~ss~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---e~~~----~~~~~~~~~ 330 (389)
+.-+..|.+.+..-.+.+-+--...+.|.=||++|.|+++++...|.+|+ .|..+| |+.| .--+-|.+|
T Consensus 96 p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETq 175 (861)
T KOG1899|consen 96 PSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQ 175 (861)
T ss_pred CCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHH
Confidence 33334444555544556666666778888899999999999988888875 344444 3332 233455566
Q ss_pred HHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 016463 331 RQKQLT-----KLYKCFIQ--VNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 331 ~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 365 (389)
.-+.++ ||+-.-+. -.++.++|+..|.++|-|-.+
T Consensus 176 KlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~ 217 (861)
T KOG1899|consen 176 KLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQS 217 (861)
T ss_pred HhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Confidence 655544 33322222 357788999999999987643
No 168
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.98 E-value=21 Score=35.30 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
+.++.+|+....+++.+...+.+++.+.+.|+..+.+.+..-+.=+.++..+.+.+.+-+.+
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~ 268 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGF 268 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445555555566666666666666666666655555555555455555555544444333
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.80 E-value=45 Score=35.37 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 016463 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRS----KKLEEALINAKKLSSHRQKQLTKLYKCF-----IQVNEYAERLK 353 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 353 (389)
+|...-+..++.-.++..+.+.++..+++++. .+||..+.+.+-++..--++...|-+.- ..|++|++...
T Consensus 459 ~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ 538 (581)
T KOG0995|consen 459 IQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQ 538 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777777777777777777664 3556555544333322223333332221 24788999999
Q ss_pred HHHHHHHHHHHHHhh
Q 016463 354 SCEREFQSIVDAAMT 368 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~ 368 (389)
.|.++|+.+++++|.
T Consensus 539 ki~~ql~~~i~~i~~ 553 (581)
T KOG0995|consen 539 KIAKQLFAVIDQISD 553 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999885
No 170
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.46 E-value=40 Score=35.83 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016463 289 LKKEISHME 297 (389)
Q Consensus 289 ~~~~~~~~~ 297 (389)
|+.++..|+
T Consensus 162 Le~e~~~l~ 170 (546)
T PF07888_consen 162 LEEEVEQLR 170 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 171
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.36 E-value=27 Score=32.63 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+...+..+..+|+.++....+-=...|..++-|.|++--++.+-++|....+.||.=|+.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 345555666677666666666666778899999999999999999999999999987654
No 172
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.07 E-value=44 Score=34.34 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 320 ALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
+.....++-..+++.+++|.+.+..-+...+.|+--+..|.-+|-+|-
T Consensus 197 q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334445566678888999999998888888888888888888877665
No 173
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.84 E-value=43 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
..++.+...+..+..+++..+..+..|+.+...+|.++.
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.79 E-value=24 Score=34.91 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
....++.+++.....++.+++.+.+|+.+.+.|+..+.+.+..-+.=+.++..+.+-..+.+.|
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777777777777777777777777666555555555555555555555444433
No 175
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.68 E-value=33 Score=34.05 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
=+-+|-|-+++.+++..+|+...+||-.+|--+. .+++|..--..+|-.+.-+|+..++.||.-+++++.|.
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~-------~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR-------EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455667777778888888888888765554433 35566666666677777777777888888888888874
No 176
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.28 E-value=28 Score=38.24 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+.+.++...|-..+..+++.++|+|.+.++|
T Consensus 475 e~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 475 EEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444456666677777777777766
No 177
>COG5570 Uncharacterized small protein [Function unknown]
Probab=78.08 E-value=8.9 Score=27.43 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+.++.+|++|---||.+++.|..--+.=...+..|..--|.|++..|+||+
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788999999999999998887777888899999999999999999986
No 178
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.38 E-value=60 Score=29.91 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL---SSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+..+...|.+-++..+.++.+|+++....+........+ -..-+++|..|...+-.+...-..|...-.+|..-+.+
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666666666666666555444322222 12224566666666666666666666666666666666
Q ss_pred Hhhh
Q 016463 366 AMTE 369 (389)
Q Consensus 366 ~~~~ 369 (389)
++.|
T Consensus 133 ~i~e 136 (201)
T PF13851_consen 133 AIQE 136 (201)
T ss_pred HHHH
Confidence 6655
No 179
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.93 E-value=6.3 Score=27.40 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.-|..||..|+..++.|+...+.|++.|...-..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999876543
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.52 E-value=57 Score=33.69 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
.+.|+|-.+|..++-.||..|...|- .|..|.|+.+.. -.+-.+.|.|.+..+|...+..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988764 678899998533 355678999999999999999999998864
No 181
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.49 E-value=30 Score=26.05 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (389)
+..++++++..=..+.+|+..+..|-.++ ..+.+.|...+.|+..+=..|...-.+||+.|++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~---~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~ 64 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQE---KTWREERAQLLEKNEQARQKVEAMITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34566677766677777777777765444 4567889999999999999999999999998874
No 182
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=76.44 E-value=42 Score=35.64 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 331 RQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
-.+.+..++.....++++++..+...+|+-..++.+..+
T Consensus 461 ~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~ 499 (607)
T KOG0240|consen 461 TRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVN 499 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555544444444433
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.21 E-value=25 Score=38.75 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh--HHHHHHHH-HHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSS--HRQKQLTK-LYKCFIQVN 346 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 346 (389)
++.-+.+..++..+.+++...+.|-+.+.+|+++.++| +.+...|.|+.. .+|..|++ +.+.+-.|+
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345677778888888888888888888888887777 555555555543 34544444 555544444
No 184
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.11 E-value=4.7 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
.-|.+|+-.|.+.|-||.-.=+||.+|-
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3488999999999999999999998764
No 185
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=75.78 E-value=13 Score=38.80 Aligned_cols=14 Identities=43% Similarity=0.620 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 016463 345 VNEYAERLKSCERE 358 (389)
Q Consensus 345 ~~~~~~~~~~~~~~ 358 (389)
|..+.-.|...|.|
T Consensus 604 Lr~~a~klr~~ere 617 (653)
T KOG2548|consen 604 LRIYAMKLRKEERE 617 (653)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 186
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.74 E-value=39 Score=38.19 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ-VNEYAERLKSCEREFQSI 362 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 362 (389)
++++......-+.+..+||.-+..++.-.-.|-+-|+|.-+|..| +.+....++..+++.+.|
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444455555555555555555555555555443 444444555555554444
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.59 E-value=60 Score=29.09 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 282 SIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
..+....+..++.++++...+...+...+++....+
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555544444444444443333
No 188
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.55 E-value=20 Score=26.98 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 50 SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 50 ~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.++-.+|+..+..|+- .. |..++. | =||.|.+..+|+.+....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999973 33 334433 3 379999999999999999999998888765
No 189
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=75.48 E-value=21 Score=38.73 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
++++++.-+..+..|+.+...||.+++...-...+-...++.|++.+..++..-+.|-..=.||...+..+|.|
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~~~ 634 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLLE 634 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455566666777777777776543222222223578888888888777776666666777766666644
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.44 E-value=70 Score=30.20 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=35.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 301 NVKEQLVLDLQ---KRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 301 ~~~~~~~~~l~---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
+++..|+.+|+ .-+-.||.....+.-=-..++..+..||.-|..|++..+.++..
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555553 33344555555555444555677788888888888888888655
No 191
>PTZ00464 SNF-7-like protein; Provisional
Probab=74.92 E-value=44 Score=31.13 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ 350 (389)
+|.+|+.++..|..-..
T Consensus 76 ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 76 QQDMMMQQQFNMDQLQF 92 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555544444333
No 192
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=74.60 E-value=11 Score=29.54 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 016463 339 YKCFIQVNEYAERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.+.-.-|+.|..+|..+|++++.|++.-..+...
T Consensus 38 eeG~~L~k~C~~~L~~ae~kI~~l~~g~~~~~~~ 71 (80)
T PRK14067 38 KEGLGLARACREQLAKARNEIRLFTEGEVKDFDP 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3456668899999999999999998755555544
No 193
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.54 E-value=39 Score=36.16 Aligned_cols=81 Identities=17% Similarity=0.359 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ-------VNEYAERLKSCE 356 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 356 (389)
..-+.+..+|++|-+-++....-..+..+...++++.+..+..-..+=...+..|.+.|.- ++.+.+.|+.++
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le 361 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777777777777777666666777777777654 555555555555
Q ss_pred HHHHHHHH
Q 016463 357 REFQSIVD 364 (389)
Q Consensus 357 ~~~~~~~~ 364 (389)
.+++.+..
T Consensus 362 ~~~~~~~~ 369 (569)
T PRK04778 362 KQYDEITE 369 (569)
T ss_pred HHHHHHHH
Confidence 55555443
No 194
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.29 E-value=1e+02 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+++++..|+..++..++....|+.+.+.+
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333
No 195
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.22 E-value=58 Score=28.22 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN-EYAERLKSCEREFQSI 362 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 362 (389)
+...+..+++++++.+.++.-++.+...|+..+..+...--.=...|.+|...+-++. .|..-+|--|.|+..|
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333333333333344555554444443 2444444444444433
No 196
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.11 E-value=37 Score=36.62 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=57.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHH
Q 016463 269 SDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ--KQLTKLYKCFIQVN 346 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 346 (389)
.++..||+.++++=+...+.+.++|..+.++|+--=....||.=+..| |=...|+ ++|+.||..|.+|-
T Consensus 497 v~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK---------kDe~~rkaYK~La~lh~~c~~Li 567 (594)
T PF05667_consen 497 VKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK---------KDEAARKAYKLLASLHENCSQLI 567 (594)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777776666666666555444 3334444 67888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 347 EYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~ 366 (389)
++.+--=....|.--|-+-+
T Consensus 568 ~~v~~tG~~~rEirdLe~qI 587 (594)
T PF05667_consen 568 ETVEETGTISREIRDLEEQI 587 (594)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77766655555555544443
No 197
>PF14282 FlxA: FlxA-like protein
Probab=73.66 E-value=24 Score=29.06 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 277 KELDRSIQRREELKKEISHMEE----RVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
..|++.|+ .|..+|..|.+ ..+.|++.+..||..++.|+.+++
T Consensus 22 ~~L~~Qi~---~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 22 EQLQKQIK---QLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHH---HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 34444444443 456666667777777777766654
No 198
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=73.43 E-value=36 Score=41.00 Aligned_cols=79 Identities=25% Similarity=0.282 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------------H----HHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH---------------R----QKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
.+|.+-...+.+...++.++.+.||..+..|.+.-++ . +++|||||-.+..+++-.+-++-
T Consensus 326 d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~l 405 (1822)
T KOG4674|consen 326 DQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKL 405 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555566666777777788777766665544 1 28999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCC
Q 016463 355 CEREFQSIVDAAMTESDI 372 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~ 372 (389)
.-.+|+-++.+.|.||..
T Consensus 406 ele~~~~~l~s~~eev~~ 423 (1822)
T KOG4674|consen 406 ELERLQNILSSFKEEVKQ 423 (1822)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999765
No 199
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=72.62 E-value=27 Score=33.23 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLE-EALINAKKLSSHRQKQLTKLY---KCFIQVNEYA 349 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 349 (389)
++.-+.+++|+.-+....+-+.|=++...--....+++-..+.|| ..+..++||.+-+-++++-|- +.=..|.-|.
T Consensus 186 ~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acE 265 (311)
T PF04642_consen 186 DQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACE 265 (311)
T ss_pred cccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHH
Confidence 334455666666555555555554444444445556666666664 445567888888877766554 3556788999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 016463 350 ERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~ 369 (389)
|+|+-.|.+-+.+|++|-.|
T Consensus 266 Ekl~kmeE~Qa~~l~~aR~~ 285 (311)
T PF04642_consen 266 EKLKKMEEEQAEMLRAARTE 285 (311)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999999988765
No 200
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.53 E-value=1.2e+02 Score=33.39 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHH------HHHHHHHHH-
Q 016463 284 QRREELKKEISHME-------ERVNVKEQLVLDLQKRSKKLEEALINA--------KKLSSHRQ------KQLTKLYKC- 341 (389)
Q Consensus 284 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~e~~~~~~--------~~~~~~~~------~~~~~~~~~- 341 (389)
|...+|+.+|+.+. .+|...+++..+||+|.+.|+.+...- +||...+. +||.+..+.
T Consensus 439 q~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 439 QSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555 346666666667777666665443322 23332222 444444433
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 342 --------------FIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 342 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
...+.+|+|-+|.-.++|..=+..+-.|+
T Consensus 519 ~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 519 KEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL 561 (697)
T ss_pred hHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233666666666666666555554443
No 201
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=72.50 E-value=31 Score=29.83 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHH---HHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLT---KLYKCFIQVN---EYAERLK 353 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~ 353 (389)
+.-....+.+..++.++.+.+++-...+.+|++....+ +.++...+++.+. +|.+....|. ...--|.
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~------~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~ 106 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLET------SARLEEARRRHQELSHRLLRVLRKQEILRNRGYALS 106 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33345566677788888888887777777776554333 3333333333222 2222222222 2222366
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 016463 354 SCEREFQSIVDAAMTESDIP 373 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~ 373 (389)
..|.+|..-+.++..++..+
T Consensus 107 ~eEe~L~~~le~l~~~l~~p 126 (141)
T PF13874_consen 107 PEEEELRKRLEALEAQLNAP 126 (141)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 77888888888888887653
No 202
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.40 E-value=41 Score=36.44 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHH----HHHHHHH
Q 016463 312 KRSKKLEEALINAKKLSSHRQ---KQLTKLYKCFIQVNEYA----ERLKSCE 356 (389)
Q Consensus 312 ~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~ 356 (389)
+-...|++...++....++.+ .+|+.|+..|.+|.+.+ +.|-+..
T Consensus 143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 333444555555555556655 78999999999998775 4444443
No 203
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.37 E-value=36 Score=25.02 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 312 KRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 312 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
++..+++.--++|.+.-.-+..++..|...+..|...++.|+..-..|+..+.++-.|
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666777777777778888888888888888888888777777777666544
No 204
>PRK14145 heat shock protein GrpE; Provisional
Probab=72.14 E-value=32 Score=31.70 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH-----RQKQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.........++..+++.+++.+..+.+|..+.+.+--...+.+|-... +..-+.+|-+.||-|-|.-++.-....
T Consensus 37 ~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~ 116 (196)
T PRK14145 37 NQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG 116 (196)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc
Confidence 334445566677778888888888888888888887777776665443 336677888899999888887754433
Q ss_pred HHH
Q 016463 358 EFQ 360 (389)
Q Consensus 358 ~~~ 360 (389)
++.
T Consensus 117 ~~~ 119 (196)
T PRK14145 117 DYN 119 (196)
T ss_pred cHH
Confidence 333
No 205
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.91 E-value=71 Score=36.27 Aligned_cols=84 Identities=15% Similarity=0.288 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI----NAKKLSS-HRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
..||...+...++-.++.+++.-+.+++.|+.-+++..++.+ ...+|+. ..+....--|+....++.+.+.++.|
T Consensus 674 ~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666665555433322 2233332 12233334455566666666777777
Q ss_pred HHHHHHHHH
Q 016463 356 EREFQSIVD 364 (389)
Q Consensus 356 ~~~~~~~~~ 364 (389)
+++++..+.
T Consensus 754 ~~~Ike~~~ 762 (1174)
T KOG0933|consen 754 EQQIKEKER 762 (1174)
T ss_pred HHHHHHHHH
Confidence 776665543
No 206
>PRK03918 chromosome segregation protein; Provisional
Probab=71.64 E-value=63 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH
Q 016463 36 IDDESSVYVGGLPYSANEDSVRK 58 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~ 58 (389)
..++.+++||. ..+-...|.+
T Consensus 21 f~~g~~~i~G~--nG~GKStil~ 41 (880)
T PRK03918 21 FDDGINLIIGQ--NGSGKSSILE 41 (880)
T ss_pred cCCCcEEEEcC--CCCCHHHHHH
Confidence 34566777773 3344444444
No 207
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.05 E-value=98 Score=29.47 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 338 (389)
.....++.++..+.++++.++..+.++..........+.+...+...+..++.++
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 124 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEEL 124 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555444443333333333333333
No 208
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.35 E-value=1e+02 Score=29.36 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
+..+..|++.++...+.+..++++..++-.++......-......+.++.+...++.....
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333333222333344444444444444333
No 209
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.82 E-value=1e+02 Score=30.44 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLV-----LDLQKRS---KKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
.+|.+++.......++.......|+++++. .+|-..+ ..|.++++..+-=...-|.+|+.|...+..++..-
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~ 250 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC 250 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444444444334444444332 1222222 23333333333323333455666665555555544
Q ss_pred HHHHHHHHHHHHHHHH
Q 016463 350 ERLKSCEREFQSIVDA 365 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~ 365 (389)
--+-..+.+|+..+.+
T Consensus 251 k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 251 KQLAAENEELQQHLQA 266 (306)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 4444455555555443
No 210
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.47 E-value=50 Score=31.03 Aligned_cols=48 Identities=38% Similarity=0.468 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
+++...........++...+.+++.-+..+..|+.+++.||+.+..+.
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455555666667777777778888888888888988888877665443
No 211
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.27 E-value=16 Score=35.09 Aligned_cols=22 Identities=41% Similarity=0.386 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 016463 314 SKKLEEALINAKKLSSHRQKQL 335 (389)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~ 335 (389)
++.||.++...+|=..|||.||
T Consensus 20 IqelE~QldkLkKE~qQrQfQl 41 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQL 41 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444444444444444
No 212
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.02 E-value=71 Score=35.42 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------------------HHHH----HH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---------------------KQLT----KL 338 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---------------------~~~~----~~ 338 (389)
|....++.-+-.+|+++...+-++-+||++-+.||.++++..---+-=| +.|+ .+
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 6666777777788888888888888899988888877654322111111 1111 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 339 YKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+--|-.|++-++.|-..|-+|++++..|..|
T Consensus 165 f~~~~~L~nk~~~lt~~~~q~~tkl~e~~~e 195 (1265)
T KOG0976|consen 165 FMIGEDLHDKNEELNEFNMEFQTKLAEANRE 195 (1265)
T ss_pred HHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777777666554
No 213
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=69.00 E-value=3.8 Score=40.31 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=8.4
Q ss_pred CCCHHHHHHHhhcc
Q 016463 50 SANEDSVRKVFDKY 63 (389)
Q Consensus 50 ~~te~dL~~~F~~~ 63 (389)
.....+|...|..|
T Consensus 168 tqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 168 TQPPADLWDWYEPY 181 (453)
T ss_pred cCChhHHHHHhhhh
Confidence 34456677666665
No 214
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=68.93 E-value=39 Score=33.23 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKL--EEALINAKKLSSHRQKQLTKLYKCFIQVNEYA-----------ERLKSCER 357 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 357 (389)
.+|...||++.+.....-+-+.|+.-. +.+-..+--|.++=|..|++++.+++||+.++ -+..+.++
T Consensus 186 ~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrk 265 (372)
T COG3524 186 EEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRK 265 (372)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHH
Confidence 344445566666666666666666544 33333445566777899999999999999998 45666666
Q ss_pred HHHHHHH
Q 016463 358 EFQSIVD 364 (389)
Q Consensus 358 ~~~~~~~ 364 (389)
||..=+.
T Consensus 266 ql~qe~q 272 (372)
T COG3524 266 QLLQEKQ 272 (372)
T ss_pred HHHHHHH
Confidence 6654443
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.92 E-value=42 Score=34.60 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
+|+.-+++.++.+-+++.+|+...+-+|.+...+.++-.+.|.-|.|+++.+.-++|.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666666666666666666666666655555555554444443
No 216
>PRK09039 hypothetical protein; Validated
Probab=68.91 E-value=40 Score=33.70 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK-----KLSSHRQKQLTKLY 339 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~-----~~~~~~~~~~~~~~ 339 (389)
+....|+.|++.|++.|..-++...+++.++..|+..+.+|. .|..||......|.
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444556777788887777777777777777777766655553 45666665555444
No 217
>PRK14160 heat shock protein GrpE; Provisional
Probab=68.76 E-value=93 Score=29.00 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS-----HRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
...++.++..+++.++..++.+.+|..+.+.+--...+.+|-.. .+.-.+.+|-+.||-|-|.-++.-.....+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~~~~ 135 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEGSVE 135 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchh
Confidence 34566677777777777777777887777777666555555433 3446677888889999988888755433333
No 218
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=68.57 E-value=81 Score=32.84 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISH-MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----------KQLTKLYKCFIQV 345 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 345 (389)
++..+|+.+=-...--+. |+|.+.+++..+.||+...-++|..|..|-++-..-. -...||-+-++++
T Consensus 466 eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 466 ELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHhhh
Q 016463 346 N--------EYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 346 ~--------~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+ +.-.++.+.+.+|--|.+++|.+
T Consensus 546 nL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~ 577 (622)
T COG5185 546 NLLSKTSILDAEQLVQSTEIKLDELKVDLNRK 577 (622)
T ss_pred hhhccchHhhHHHHHHHHHhhHHHHHHHHHHH
No 219
>PRK02224 chromosome segregation protein; Provisional
Probab=68.11 E-value=97 Score=34.77 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 327 LSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
+.+....+..++..+--+|.+++..|+..+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 220
>PHA02562 46 endonuclease subunit; Provisional
Probab=67.83 E-value=90 Score=32.87 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=7.9
Q ss_pred CcEEEEcCCCCCCCHHHH
Q 016463 39 ESSVYVGGLPYSANEDSV 56 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL 56 (389)
+.++++| |..+-...|
T Consensus 28 g~~~i~G--~NG~GKStl 43 (562)
T PHA02562 28 KKTLITG--KNGAGKSTM 43 (562)
T ss_pred CEEEEEC--CCCCCHHHH
Confidence 4566665 334444444
No 221
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=67.79 E-value=61 Score=25.81 Aligned_cols=54 Identities=30% Similarity=0.449 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 342 (389)
.+.++.++..++++++..+..+.-|+++.++|+. ...|-.++|-=.---+...|
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k---~eRK~RtHRLi~rGa~lEsi 56 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK---KERKERTHRLIERGAILESI 56 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHH
Confidence 3456667777777777777888888888888876 23555666653333333333
No 222
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=67.46 E-value=44 Score=29.10 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
..+.|..++..++.++++....+.++.++.. -+.++..++++-.+ ++++.+++.++.+|......|.++..
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~-~~~A~~~lk~~k~~-~k~~~~~~~~~~~l~~~~~~ie~a~~ 79 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN-KERAKIYLKRKKRL-EKQLEKLLNQLSNLESVLLQIETAQS 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHCTT--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777666666666665544 34455555555444 45666777777777666655555443
No 223
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=67.34 E-value=35 Score=36.39 Aligned_cols=55 Identities=31% Similarity=0.390 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCF 342 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~ 342 (389)
+-++.++.+++.|+ .....+..|+++.+++ +.++.+|.+||..|++...+|-++.
T Consensus 325 ~~~~~~~~el~~L~----~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 325 EYLDKIKEELAQLD----NSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444 4445556677777777 6777889999999999888887764
No 224
>PRK03918 chromosome segregation protein; Provisional
Probab=67.29 E-value=96 Score=34.71 Aligned_cols=7 Identities=0% Similarity=0.207 Sum_probs=3.3
Q ss_pred EEEEcCC
Q 016463 41 SVYVGGL 47 (389)
Q Consensus 41 ~lfVgnL 47 (389)
.|.|.|+
T Consensus 5 ~l~i~nf 11 (880)
T PRK03918 5 ELKIKNF 11 (880)
T ss_pred EEEEeCc
Confidence 3445444
No 225
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.16 E-value=87 Score=28.53 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+..++..+..+.+|+.+...|+....++.|.....+....|.| ++..+.||-.++.|+.-
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~------~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH------QEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555545555554444443334433 34445555555555543
No 226
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=66.88 E-value=81 Score=29.04 Aligned_cols=82 Identities=28% Similarity=0.349 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL-KSCEREFQSI 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 362 (389)
.+...+.+.+..+...+++-.....+.-+-..+++.+++.+++++...+..|.|+.+-|...++.=+.| ..+-.||-.|
T Consensus 100 ~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l 179 (216)
T cd07599 100 LPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKL 179 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 556666777777778888888888887777888888666666778888888888877777665433322 2233455555
Q ss_pred HHH
Q 016463 363 VDA 365 (389)
Q Consensus 363 ~~~ 365 (389)
++.
T Consensus 180 ~~~ 182 (216)
T cd07599 180 LAL 182 (216)
T ss_pred HHH
Confidence 443
No 227
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.71 E-value=97 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
..|-..+..++...+.|....+++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 161 QELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.36 E-value=22 Score=34.45 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCceEEEEEEcChH
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPR 91 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I-~~v~v~~d~~~~~kG~aFVeF~~~~ 91 (389)
.+-|||+||+.++.-.+|+..+.+.|.+ ..|.+.. +.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 4679999999999999999999887743 2444422 4568999996543
No 229
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=66.06 E-value=1.2e+02 Score=34.56 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-H--HHHHHHHHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK-C--FIQVNEYAERLKSCE 356 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 356 (389)
..+++++-.+...|..++++......+...+-++..-||.++-+..+=.-.=++++++|.. | -.+|-..++.|--..
T Consensus 498 ~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~ 577 (1195)
T KOG4643|consen 498 NNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIH 577 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 3444555556666666666666665555555555555555555544444444466666654 1 124556677777777
Q ss_pred HHHHHHHHHHh
Q 016463 357 REFQSIVDAAM 367 (389)
Q Consensus 357 ~~~~~~~~~~~ 367 (389)
.+|+-+++++-
T Consensus 578 ~elkk~idaL~ 588 (1195)
T KOG4643|consen 578 NELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 230
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=65.78 E-value=82 Score=26.60 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
..++..--.+.+.|.+..+.|......-.|-+.+=-..+.++..++--|=|.-+=.++.|.+|+.|..++
T Consensus 39 n~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L 108 (121)
T PF06320_consen 39 NSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWAEMIERDLRVIEETL 108 (121)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666655666655556666677777777888888899999999887653
No 231
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.54 E-value=53 Score=29.85 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
.....+..++..++.++...+.++.++.+-.+.|-+++++. |.++.-|-+.+-.|+..|..|
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L-------~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL-------QLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666665553 345555555566666555544
No 232
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=65.50 E-value=71 Score=31.82 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=4.1
Q ss_pred CCCCCC
Q 016463 382 GPRTNG 387 (389)
Q Consensus 382 ~~~~~~ 387 (389)
-|.+||
T Consensus 91 LPkkNG 96 (330)
T PF07851_consen 91 LPKKNG 96 (330)
T ss_pred CCCCCC
Confidence 477776
No 233
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.32 E-value=65 Score=34.96 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHH-------------------HHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI---------NAKKLSSHRQ-------------------KQLTKLY 339 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~---------~~~~~~~~~~-------------------~~~~~~~ 339 (389)
.++.++..|++.++.|..+...|+....++.+.|. ++.|=..++| .++-.++
T Consensus 206 ~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~ 285 (617)
T PF15070_consen 206 ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAH 285 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555666667778887777777776555443333 1111111111 2333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 340 KCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
+-+-++++.-+.|-.-+++|++.|...+...
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~ 316 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLSLMALPG 316 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Confidence 5555666777777788888988887655553
No 234
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=64.96 E-value=1e+02 Score=35.74 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQK---------------RSKKLEEALINAKKLSSHRQKQLTKLYK 340 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 340 (389)
++.++..++...+++....++++-++.......+||. +...++..+..++.+..+-++.|..+++
T Consensus 450 ~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 450 KEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444444444444443 3333333333333333444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 341 CFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
--.+..+.++++-...++|-.-.+.+-
T Consensus 530 ~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 530 KNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 555555555555555554444333333
No 235
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=64.66 E-value=1.2e+02 Score=33.68 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 342 (389)
++++.......+...+...+++++..+..+.|++.+...|..++..+++..+.=-.+|..+...+
T Consensus 597 elE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~ 661 (769)
T PF05911_consen 597 ELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556666666788888888888888888888888887777766555555443333
No 236
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=64.64 E-value=11 Score=33.88 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
+.|..++++.||+.+..+||. ++..|.+.|.||+ +.|..-|.||+.+-
T Consensus 100 kee~~~~e~~elr~~~~~l~~--------------~i~~~~~~~~~L~---~~l~~~~~el~~~~ 147 (181)
T KOG3335|consen 100 KEEKRKQEIMELRLKVEKLEN--------------AIAELTKFFSQLH---SKLNKPESELKPIR 147 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---HHHcCccccccccc
Confidence 456667778888888888877 5666777788888 66666677776543
No 237
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=63.54 E-value=1.3e+02 Score=32.82 Aligned_cols=92 Identities=24% Similarity=0.397 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHH--------HHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN-AKKLSSHRQKQLTKLYKCFI--------QVNEYAE 350 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 350 (389)
|.+.+.++.+..+|..+..++...++.+..+......-|..... ..+++..+.++| |.++|. .+++|+-
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~--LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQL--LLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888877777777766666555544433322 244455555444 233333 2456666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC
Q 016463 351 RLKSCEREFQSIVDAAMTESDIP 373 (389)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~ 373 (389)
+|.-.=+.||.+=..|-.+|...
T Consensus 153 rl~~~~~~~q~~~R~a~~~v~~~ 175 (632)
T PF14817_consen 153 RLQGQVEQLQDIQRKAKVEVEFG 175 (632)
T ss_pred HHHHHHHHHHHHHhhccCceeec
Confidence 66666666666666666665553
No 238
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.34 E-value=1.4e+02 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 016463 334 QLTKLYKCFIQVNEYAERLKS-CEREFQSIVDAAMTES 370 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 370 (389)
++.++++.+.+++.+.+.|+. .|++|..||-.+..+|
T Consensus 93 ~~e~~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~V 130 (234)
T COG1317 93 VLERLAKLIAEFQAELEALKEVVEKQLVQLVLEIARKV 130 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888889999999999998 8999999998888774
No 239
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.19 E-value=1.1e+02 Score=35.09 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS 329 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 329 (389)
+..+.-+..|+++++.+...++++++++.+...|+++......|-.
T Consensus 221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~ 266 (1074)
T KOG0250|consen 221 ESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQ 266 (1074)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777788888888888888888877776665555443
No 240
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=62.82 E-value=76 Score=26.29 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHM-EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (389)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (389)
|.-|..|.+++-- .|++|..+..|.||..+...||.+-...+-|.+- .||.+|+.|+.
T Consensus 52 QAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~sp--e~L~ql~~~~~ 110 (123)
T KOG4797|consen 52 QAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLASP--EQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHhcc
Confidence 4556677776543 3788888899999999999999988888877774 56677776653
No 241
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.67 E-value=77 Score=29.06 Aligned_cols=29 Identities=34% Similarity=0.691 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKR 313 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (389)
.++.+..+++.++..++..+..+.+|.++
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 242
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.53 E-value=1.6e+02 Score=30.28 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 335 LTKLYKCFIQVNEYAERL 352 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (389)
|.+|.+-...+....+.|
T Consensus 89 l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 89 LKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 333433333333333333
No 243
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.35 E-value=1.5e+02 Score=28.28 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.+|.+...-+++--.++..+=-+++..|+.+|.+
T Consensus 120 ~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 120 EKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445555444
No 244
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=62.01 E-value=89 Score=29.45 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEER-VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-QVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 286 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 363 (389)
.++.++.+.+|+.+ ..+-++-..||+++.+-+.-+...++|-. -+++.++. .+++.|++-...|+==+..|
T Consensus 106 ~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~-------~~~~~~ldsa~~dvn~k~~~lEe~ek~al 178 (231)
T cd07643 106 IEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK-------GDLQPQLDSAMQDVNDKYLLLEETEKKAV 178 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC-------CccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555532 23334444556666665555555555522 22333333 34777777777777666666
Q ss_pred HHHhhh
Q 016463 364 DAAMTE 369 (389)
Q Consensus 364 ~~~~~~ 369 (389)
-.||.|
T Consensus 179 R~aLiE 184 (231)
T cd07643 179 RNALIE 184 (231)
T ss_pred HHHHHH
Confidence 666655
No 245
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.00 E-value=1.3e+02 Score=31.77 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHHHH--
Q 016463 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKK-LEEALINAKKLSSHRQKQLTK------LYKCFIQVNEYA-- 349 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 349 (389)
++...+..+-++.++..|+..++....++.+++..... .+.+.....+++....-.+++ +|.||--+.+..
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~ 355 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSR 355 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666766666554444444333333222 133333344555555444444 777886666644
Q ss_pred ------HHHHHHHHHHHHHHHHHhhh
Q 016463 350 ------ERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 350 ------~~~~~~~~~~~~~~~~~~~~ 369 (389)
-+++.-|.|+|-|...++.-
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSAR 381 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678888888776554
No 246
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.82 E-value=1.1e+02 Score=29.69 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016463 350 ERLKSCEREFQSIVDA 365 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~ 365 (389)
+-...+|.|||.|.+.
T Consensus 225 dEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 247
>PRK02224 chromosome segregation protein; Provisional
Probab=61.79 E-value=1.8e+02 Score=32.60 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=6.4
Q ss_pred CCCCcEEEEc
Q 016463 36 IDDESSVYVG 45 (389)
Q Consensus 36 ~~~~~~lfVg 45 (389)
..++.+|++|
T Consensus 21 f~~g~~~i~G 30 (880)
T PRK02224 21 LEDGVTVIHG 30 (880)
T ss_pred cCCCeEEEEC
Confidence 4456677776
No 248
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=61.78 E-value=1.3e+02 Score=27.64 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
..|.+|.+.-..+.+-+...+.--..++..+|.++.++
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888777777777777777777777777777664
No 249
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.63 E-value=1.3e+02 Score=27.42 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK-KLSSHRQKQLTKLYKCFIQVNEYA 349 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
...+..+++.|+++.+..+.++.+|..+...++....... ...-.++..+..|.+.=-||++.-
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889998888888999999888888876555432 234456788888888776766543
No 250
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.54 E-value=1.4e+02 Score=27.94 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
..|.+|.+....|.+.-...|.--..++.-+|.+|.|+.
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667888888888888777777777777888888888764
No 251
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=61.39 E-value=75 Score=37.03 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 016463 350 ERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
+.+...|.+-..|||.+|.+.+-
T Consensus 227 ~~~~~~E~~tr~~Id~~L~~aGW 249 (1123)
T PRK11448 227 KRLELSEEETRILIDQQLRKAGW 249 (1123)
T ss_pred ccccCCHHHHHHHHHHHHHHCCC
Confidence 34455577777799999999664
No 252
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.23 E-value=1.8e+02 Score=32.46 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHR--------QKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
++++.+-+.++.++-.+.-+||++|.|.+.- -++ -+.||.|-.+|.|+-+.+++++....++-.-++.+|.
T Consensus 133 q~d~ke~etelE~~~srlh~le~eLsAk~~e-If~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~ 211 (1265)
T KOG0976|consen 133 QDDKKENEIEIENLNSRLHKLEDELSAKAHD-IFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLI 211 (1265)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH-HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444555555555555555432211 111 1678888999999999999998887777666676666
Q ss_pred h
Q 016463 369 E 369 (389)
Q Consensus 369 ~ 369 (389)
+
T Consensus 212 ~ 212 (1265)
T KOG0976|consen 212 E 212 (1265)
T ss_pred c
Confidence 5
No 253
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.11 E-value=1e+02 Score=28.94 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 016463 295 HMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
.|-+++++++.+..++|.+.+.||.++....-+.-..-..|.+|.+-|..|-+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 33456666666777777777777766655554444444566777777766544
No 254
>PRK14139 heat shock protein GrpE; Provisional
Probab=61.07 E-value=85 Score=28.61 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH-----RQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
+++++++.++++.+|+.+...+--...+.+|-... +...+.+|-+.||-|-|.-++.-
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl 99 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAAL 99 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 33444555555556666666555555555443332 23456677788888888877754
No 255
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.01 E-value=1.2e+02 Score=26.95 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL--------------INAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
.++-+..++.++++++..++..|..+....=-.+ ...+.--..++..+.++..-+.+|+..-++|+
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677888888888888776664332222 22222222333555555555555555555555
Q ss_pred HHHHHHH
Q 016463 354 SCEREFQ 360 (389)
Q Consensus 354 ~~~~~~~ 360 (389)
....+|+
T Consensus 126 ~~~~~l~ 132 (177)
T PF13870_consen 126 KQNKKLR 132 (177)
T ss_pred HHHHHHH
Confidence 5555554
No 256
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.91 E-value=73 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016463 345 VNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
|...+++|+..-...+.=|++++
T Consensus 44 L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 44 LKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 257
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.64 E-value=1.7e+02 Score=33.51 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLT-----------KLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
..+.+.+.++||.++.+..+.-...+..++ ++.++=..|++-+.-|.+.+.+|+-+.+.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444443333 44455556666666777777777777776
No 258
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=60.64 E-value=39 Score=33.50 Aligned_cols=9 Identities=0% Similarity=0.250 Sum_probs=3.9
Q ss_pred CCCHHHHHH
Q 016463 50 SANEDSVRK 58 (389)
Q Consensus 50 ~~te~dL~~ 58 (389)
.+++.+|.+
T Consensus 212 d~~k~eid~ 220 (367)
T KOG0835|consen 212 DTTKREIDE 220 (367)
T ss_pred CCcHHHHHH
Confidence 344444433
No 259
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=60.58 E-value=23 Score=35.99 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=55.3
Q ss_pred cCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeeCCCCCC----------------------------
Q 016463 33 KMTIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRSTRG---------------------------- 79 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~-~te~dL~~~F~~~----G~I~~v~v~~d~~~~~---------------------------- 79 (389)
+...++...|-|.||.|. +...+|..+|+.| |.|..|.|+....|+.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 444677889999999986 7788999988765 5777777654321100
Q ss_pred --------------------------------------ceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 80 --------------------------------------KCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 80 --------------------------------------kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
.-||.|+|.+...+...+..++|..+..
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 1278889999999999999899988764
No 260
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.27 E-value=2e+02 Score=31.31 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 016463 352 LKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~ 369 (389)
+...|.+++.++..+|.-
T Consensus 504 ~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334566667777777653
No 261
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=60.25 E-value=51 Score=29.65 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHH
Q 016463 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQ---KQLTKLYKCFIQ 344 (389)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~ 344 (389)
-+.++++|.++.+.||+....++.|...=. .+|-...+.||+
T Consensus 125 L~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~ 169 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQ 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677888888888888888777764433 445555555543
No 262
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.22 E-value=1.5e+02 Score=27.89 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (389)
...-++.+|-.-.+-++.+++.+.|+.+....|..
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~ 46 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQ 46 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555666666666666555533
No 263
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.54 E-value=1.8e+02 Score=28.58 Aligned_cols=67 Identities=25% Similarity=0.320 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
+..+.+..+.+....-....+..|-|||+.++.| |.-+..+......|.....+++..+..|+..-+
T Consensus 57 kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~e 124 (309)
T PF09728_consen 57 KEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQME 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666677788899999999999 666777777778888888888888888876543
No 264
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.41 E-value=1.8e+02 Score=28.86 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKK 316 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (389)
...-..+|..|+.+|+.++..+.+-++...+
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ 40 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEE 40 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444443333333
No 265
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=59.28 E-value=1.8e+02 Score=32.55 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ----VNEYAERLKSCEREFQSI 362 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 362 (389)
-+.+.+|.++++.+..++++..-||...-.|...+..+.....+.+.++++|+.-+.. |.+..+.|.-++.++..|
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999988887766 445555666666666666
Q ss_pred HHH
Q 016463 363 VDA 365 (389)
Q Consensus 363 ~~~ 365 (389)
+.-
T Consensus 398 q~k 400 (775)
T PF10174_consen 398 QKK 400 (775)
T ss_pred HHH
Confidence 544
No 266
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=59.25 E-value=67 Score=33.41 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHH----
Q 016463 265 SSNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSK--------KLEEALINAKKLSSHRQ---- 332 (389)
Q Consensus 265 ss~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~e~~~~~~~~~~~~~~---- 332 (389)
+-+|+-+.-++++..|+.|.+..+.+.++.+.+|++-..-+.+.|-+.++. .+|+--++|+|++--=-
T Consensus 105 ~~DS~~~DE~~~~~eE~k~~~e~P~kqqi~~~Ke~ia~~~tki~EePeeNl~~~~~vf~mi~S~~~~~kk~s~LsLl~VF 184 (657)
T COG5117 105 EIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEPEENLGMMEEVFSMITSMAEKAKKVSYLSLLKVF 184 (657)
T ss_pred cccccccccccchhhhhhcCCCCChHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 334555556777788999999889999999999887777666666665554 45555677888775332
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 016463 333 ---------------KQLTKLYKCFIQVNEYAER-LKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 333 ---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 369 (389)
-|.+|+-|--+++++|-.- |+-.-.=+|+||+..-.+
T Consensus 185 k~IIPgYkIRpL~e~Eq~~K~skev~~l~~yeqsLl~~Y~~yi~tl~~~~k~~ 237 (657)
T COG5117 185 KAIIPGYKIRPLKEEEQMVKDSKEVLHLKDYEQSLLRWYTSYIKTLVDDVKDE 237 (657)
T ss_pred HHhCccccccccchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4567777777777776433 344444455555544333
No 267
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=59.18 E-value=1.8e+02 Score=33.45 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=5.9
Q ss_pred CCCCcEEEEc
Q 016463 36 IDDESSVYVG 45 (389)
Q Consensus 36 ~~~~~~lfVg 45 (389)
..++.+++||
T Consensus 21 f~~~~~~i~G 30 (1164)
T TIGR02169 21 FSKGFTVISG 30 (1164)
T ss_pred ecCCeEEEEC
Confidence 3455666666
No 268
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.07 E-value=1e+02 Score=32.66 Aligned_cols=63 Identities=25% Similarity=0.237 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+..|..+..++-..+.++.--...-...+..|...+-||...++.+|..-...+.=|.-++.|
T Consensus 339 v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E 401 (522)
T PF05701_consen 339 VSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEE 401 (522)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344333333333334556666677777777666665555555444444444
No 269
>PRK02119 hypothetical protein; Provisional
Probab=58.81 E-value=79 Score=24.21 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (389)
+..|++++...+-.++. .|+.+....+.-..-|+++..|...+-.|
T Consensus 4 ~~~~e~Ri~~LE~rla~-------QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAF-------QENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455454444444444 34444444444444455666666544333
No 270
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.74 E-value=1.6e+02 Score=33.33 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
++..+.++..|....++|+.++.....+. ..+..+.++..+..++.+--+.|..-...|+.++.+.
T Consensus 554 ~~~l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 554 LQQLKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455566666666666666666 4455666666666666655555555555555555544
No 271
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.63 E-value=1.8e+02 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 339 YKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
++|=+.|+-|+-+-.+||++|+.-.+.|
T Consensus 343 ~T~E~E~q~~~kkrqnaekql~~Ake~~ 370 (575)
T KOG4403|consen 343 LTHEVEVQYYNKKRQNAEKQLKEAKEMA 370 (575)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4577788888888899999998776644
No 272
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=58.59 E-value=25 Score=32.38 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVD 364 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (389)
.+||+..-++++...+||..+.+|+.|++
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777776665
No 273
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=58.08 E-value=1.8e+02 Score=28.84 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 016463 303 KEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQV-------NEYAERLKSCEREF 359 (389)
Q Consensus 303 ~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 359 (389)
.+..|-+||..++++ |..++.++++.-.|...+++++-.+..| .+.++.|...+.+|
T Consensus 78 LeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL 142 (391)
T KOG1850|consen 78 LEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIEL 142 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345678999999999 8889999999998887777776555544 45566666665554
No 274
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.90 E-value=1.5e+02 Score=26.98 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016463 289 LKKEISHME 297 (389)
Q Consensus 289 ~~~~~~~~~ 297 (389)
++.++..++
T Consensus 81 ~~~~i~~l~ 89 (188)
T PF03962_consen 81 LEKKIEELE 89 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 275
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.89 E-value=1.4e+02 Score=31.95 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+.+++....+.++.+....+...+....+-...=+..|.++.+.+..++
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444433344444444444444
No 276
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.69 E-value=1.8e+02 Score=34.54 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
.+++-.+..+.+...+++.+...+..+..+....+.+|..+..+.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~ 251 (1311)
T TIGR00606 207 MELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLK 251 (1311)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444445555555555544433333
No 277
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.65 E-value=1.7e+02 Score=32.46 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHH
Q 016463 317 LEEALINAKKLSSHRQKQLTKLYK--CFIQVNE-------YAERLKSCEREFQSIVD 364 (389)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~ 364 (389)
||.-.++-.-|.-+||.+..+... -+.|-.. .+.++|..++||.+|-.
T Consensus 395 ie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 395 IERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666644433322 2222211 46677888888888754
No 278
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=57.51 E-value=2.1e+02 Score=32.82 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=5.2
Q ss_pred CCCcEEEEc
Q 016463 37 DDESSVYVG 45 (389)
Q Consensus 37 ~~~~~lfVg 45 (389)
.++.+++||
T Consensus 22 ~~~~~~i~G 30 (1179)
T TIGR02168 22 DKGITGIVG 30 (1179)
T ss_pred cCCcEEEEC
Confidence 355666665
No 279
>PF15294 Leu_zip: Leucine zipper
Probab=57.36 E-value=1.6e+02 Score=28.59 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL---------SSHRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 348 (389)
+...++.|...|.+++..-+..+...-+...+|+.++.....+ ..-.--.|+.|..++..|++.
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 3444555555566655555555555555555555444433330 112224455566666555544
No 280
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=57.20 E-value=1.8e+02 Score=29.90 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSK-------KL----EEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+..+=+|--.-|.++-+++.|-||-..|+..||+.--. ++ |++.+.|.-|-.-=-..-.||.=-+.||+
T Consensus 133 kt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 133 KTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc
Confidence 33444455556888999999888877777777764433 33 34444443332222244456666667888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhcCCCCcccccCCCCCCCC
Q 016463 347 EYAE-RLKSCEREFQSIVDAAMTESDIPDDVCVKDGGPRTNG 387 (389)
Q Consensus 347 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (389)
+++- |-+..=+||...+.+-+.-... .-++..+|.+...|
T Consensus 213 dE~prrqe~e~qELeqkleagls~~~l-~p~~~~~g~~~p~~ 253 (558)
T PF15358_consen 213 DETPRRQEAEWQELEQKLEAGLSRSGL-PPTADSTGCPGPPG 253 (558)
T ss_pred ccCcchhhhhHHHHHHHHhhhhhhcCC-CccccCCCCCCCCC
Confidence 8887 5566667777777776655222 11334455443333
No 281
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.10 E-value=2.3e+02 Score=29.75 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 016463 307 VLDLQKRSKK 316 (389)
Q Consensus 307 ~~~l~~~~~~ 316 (389)
..+++.+...
T Consensus 332 ~~~~~~~i~e 341 (562)
T PHA02562 332 FNEQSKKLLE 341 (562)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 282
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.90 E-value=94 Score=29.05 Aligned_cols=47 Identities=30% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+....||+++.++||.+.. -.--=++|...|..-|.+|-+.+++|..
T Consensus 161 ~kL~~el~~~~~~Le~~~~----~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQK----KVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3334444555444444332 2233357788888899999988888865
No 283
>PRK01156 chromosome segregation protein; Provisional
Probab=56.81 E-value=1.9e+02 Score=32.66 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.7
Q ss_pred CCCCCcEEEEcC
Q 016463 35 TIDDESSVYVGG 46 (389)
Q Consensus 35 ~~~~~~~lfVgn 46 (389)
...++.+|++|.
T Consensus 20 ~f~~gi~~I~G~ 31 (895)
T PRK01156 20 EFDTGINIITGK 31 (895)
T ss_pred ecCCCeEEEECC
Confidence 345667777774
No 284
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.63 E-value=2.4e+02 Score=29.03 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSK-----------KLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~-----------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
+.+++....+..|+.-.. ||-+.+...+-+-.+.+.++--|....--+++--+-|.+|+.||++++.-|
T Consensus 216 k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i 295 (446)
T KOG4438|consen 216 KILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKI 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 456666666666665544 455566666666667777777788888888888899999999999988877
Q ss_pred hhh
Q 016463 367 MTE 369 (389)
Q Consensus 367 ~~~ 369 (389)
-.+
T Consensus 296 ~~~ 298 (446)
T KOG4438|consen 296 SSD 298 (446)
T ss_pred HHh
Confidence 655
No 285
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=56.57 E-value=2.1e+02 Score=28.27 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcC
Q 016463 310 LQKRSKKLEEALINA-KKLSSHRQKQLTKLYKCFIQVNEYAERL-KSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 310 l~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 371 (389)
|-+|+++|...+... .++...=.-..-.|.+-+.||+...-.| ...|+|-..+|+.+|..++
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~ 145 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIE 145 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444443333332 2333222344455777777777665544 3455556667776665543
No 286
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.36 E-value=57 Score=32.53 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016463 350 ERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~ 368 (389)
+.+...+.+++.|+..++.
T Consensus 298 ~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 298 EQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHH
Confidence 3445666777777765554
No 287
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.24 E-value=1.3e+02 Score=28.01 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS-----HRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
+++++++.++++.+|+.+.+.+--...+.+|-.. .+...+.+|-+.||-|-|.-++.-
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL 119 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGL 119 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 4445555566666666666666555555444332 333567778888888888887754
No 288
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.08 E-value=8.6 Score=34.81 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=54.4
Q ss_pred CCCcEEEEcCCCCCCCH-----HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccE-EE
Q 016463 37 DDESSVYVGGLPYSANE-----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VV 110 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te-----~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l 110 (389)
+-.+++++++++..+.. .....+|.+|-+...+.+.. +.++.-|.|.+...|..|...+++..|.|. .|
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34567888888876532 23456677666554444432 445677899999999999999999999988 77
Q ss_pred EEEEeccc
Q 016463 111 RVSEVATR 118 (389)
Q Consensus 111 ~V~~a~~~ 118 (389)
+.-++.+.
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77776543
No 289
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.05 E-value=2.1e+02 Score=32.90 Aligned_cols=9 Identities=11% Similarity=0.575 Sum_probs=6.8
Q ss_pred CCeEEEEEe
Q 016463 64 GSVVAVKIV 72 (389)
Q Consensus 64 G~I~~v~v~ 72 (389)
|.|..|+|.
T Consensus 40 G~I~sI~L~ 48 (1074)
T KOG0250|consen 40 GKIESIHLT 48 (1074)
T ss_pred ceEEEEEEe
Confidence 888888764
No 290
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=55.89 E-value=72 Score=23.33 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 016463 308 LDLQKRSKKLEEALINAKKLSSHRQ-------KQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
.++..+...+|..+..+.-+.+..| ..|+++-.+|++|.+--+.|+.|
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~q 57 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQQ 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777888888888888888888 88999999999998877777654
No 291
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.80 E-value=1.7e+02 Score=33.13 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 341 CFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.-+.|.+.-+.|+-.-+||+-=|++||.-
T Consensus 491 le~DLreEld~~~g~~kel~~r~~aaqet 519 (1243)
T KOG0971|consen 491 LELDLREELDMAKGARKELQKRVEAAQET 519 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666543
No 292
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.70 E-value=1.7e+02 Score=36.10 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 016463 328 SSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.-.+++.|.-|..++.+++.-...|......||..+.....||+.
T Consensus 1184 r~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~ 1228 (1930)
T KOG0161|consen 1184 RKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQ 1228 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344458899999999999999999999999999999999988763
No 293
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.64 E-value=92 Score=23.90 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
+++++.+.+-.+++..+-+..|-+.++. .|+.+.||+. ||+-.+++|+..
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laE-------q~~~i~k~q~---qlr~L~~kl~~~ 55 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAE-------QQLVIDKLQA---QLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHhh
Confidence 4445555555555544444444444443 3455555553 333445555543
No 294
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=55.37 E-value=71 Score=31.32 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.9
Q ss_pred HHHHHHHhhcc
Q 016463 53 EDSVRKVFDKY 63 (389)
Q Consensus 53 e~dL~~~F~~~ 63 (389)
+.++...|...
T Consensus 153 erdm~~AYK~a 163 (335)
T KOG0113|consen 153 ERDMKAAYKDA 163 (335)
T ss_pred HHHHHHHHHhc
Confidence 34444444443
No 295
>PRK14143 heat shock protein GrpE; Provisional
Probab=55.22 E-value=1.8e+02 Score=27.57 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 295 HMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-----SHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
.+++++++.++++.+|..+++.+--...+.+|-. ..+...+.+|-+-||-|-|.-++.-
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERAR 134 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3555555566666666666666554444444433 3344667788888888888888863
No 296
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.13 E-value=1.1e+02 Score=27.07 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQ 305 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
+.+......+.++.||......|+..+.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666666655544444444
No 297
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=54.74 E-value=1e+02 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.0
Q ss_pred EEEEcChHHHHHHHH--hcCCcee
Q 016463 84 FVTFGNPRSAVDAIN--DMNGRTI 105 (389)
Q Consensus 84 FVeF~~~~~A~~Al~--~l~g~~i 105 (389)
|-.=.+.++|.+|+. .|+|.+|
T Consensus 62 f~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 62 FHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eeecchHHHHHHhhcceeecccee
Confidence 334456788888885 5789887
No 298
>PRK10698 phage shock protein PspA; Provisional
Probab=54.65 E-value=1.9e+02 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
++..|...+.++....+.|+.-...|+.-
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 299
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.57 E-value=1.4e+02 Score=27.19 Aligned_cols=30 Identities=7% Similarity=0.336 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKK 316 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (389)
..+...+..++.+++..+..+.+|+.+...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 300
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.42 E-value=1.8e+02 Score=26.73 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSS-----HRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
+..-.-+..+.+......++.+.+....+|+. .|.....+|...=..+.+...+++..++.|...-.+...
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333334444444444455555555555544 244555555555556666667777777766666555443
No 301
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.23 E-value=2.3e+02 Score=29.34 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=32.0
Q ss_pred HhhhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 326 KLSSHRQKQLTKLYKCF----------------IQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 326 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.|.++|++...+||.+= +.+.+-.++.+.|++.+|.-+.....+
T Consensus 165 sLe~eR~k~~~ql~~~~~~~e~~e~~e~~~s~~~~~k~~k~~ae~~~qq~q~~a~~~~n~ 224 (438)
T COG4487 165 SLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGEALELPNE 224 (438)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcchh
Confidence 36778888888888772 344556778889999999888655544
No 302
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.79 E-value=1.7e+02 Score=35.17 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=6.4
Q ss_pred ceEEEEEEcC
Q 016463 80 KCYGFVTFGN 89 (389)
Q Consensus 80 kG~aFVeF~~ 89 (389)
.||++|+|.+
T Consensus 85 ~~Y~~lef~d 94 (1486)
T PRK04863 85 VCYAALDVVN 94 (1486)
T ss_pred ceEEEEEEEe
Confidence 3677777743
No 303
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.76 E-value=1.5e+02 Score=33.13 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (389)
++..+-.+.-.+++-++...+|+-...+|+.++...--.-++..++++-|..+|-
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444445666666666777777777766666655555555566666666554
No 304
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.69 E-value=55 Score=25.29 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.++-++..+.-+..|.+-...||+.+ ....+...-++.|..+|..+|+.++.||...
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl--------------~~ye~G~~L~k~c~~~L~~ae~kv~~l~~~~ 64 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSL--------------DMYQKGIELTKLCQDKLQSAEKRMAKVVTDA 64 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555555555555555543 3344566678899999999999999998653
No 305
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=53.54 E-value=1.5e+02 Score=25.66 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH---RQK----QLTKLYKCFIQVNEYAERLKSCEREFQSIVD 364 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (389)
+.+.+...++.+++.++.++.....+.++++.+...... -|. ++.++.....+-+.-.++|+.++.+|..--+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 344555566666666666666655555555554444422 222 2334444444555556667777666665554
Q ss_pred H
Q 016463 365 A 365 (389)
Q Consensus 365 ~ 365 (389)
+
T Consensus 100 t 100 (135)
T TIGR03495 100 T 100 (135)
T ss_pred C
Confidence 4
No 306
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=53.31 E-value=1.6e+02 Score=30.09 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 340 (389)
+.-+.+++.+..+-..-++||+.....++.....++|+-......+..+|.
T Consensus 240 ~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~ 290 (412)
T PF04108_consen 240 QEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYN 290 (412)
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888889999999999999988877776665544444443
No 307
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.13 E-value=2.2e+02 Score=31.25 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 301 NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (389)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
+++-..|.+|+...++|+.-|....-+.-..|-.+.||+--.-.+.+|+-+++..-.+|+
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le 550 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALE 550 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334446777888888887777777777777778888888888888888877555444443
No 308
>PRK10869 recombination and repair protein; Provisional
Probab=53.11 E-value=76 Score=33.89 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=9.4
Q ss_pred cCCCCCCcEEEEcC
Q 016463 33 KMTIDDESSVYVGG 46 (389)
Q Consensus 33 ~~~~~~~~~lfVgn 46 (389)
.....++.+|++|.
T Consensus 17 ~i~f~~glnvitGe 30 (553)
T PRK10869 17 EIDFQSGMTVITGE 30 (553)
T ss_pred EEecCCCcEEEECC
Confidence 34456778888873
No 309
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.05 E-value=17 Score=30.49 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=26.1
Q ss_pred CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcCh-HHHHHHHH
Q 016463 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP-RSAVDAIN 98 (389)
Q Consensus 52 te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~-~~A~~Al~ 98 (389)
+.+.|.+.|..|..+. +..+.+.. .+.|+++|.|... .-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 4478999999998875 55555444 3678999999743 44445554
No 310
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=53.00 E-value=1.8e+02 Score=26.41 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (389)
.++-+-|.-+.|..--+.|.+.++.......-|....++|+.
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~ 109 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQ 109 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555556667777777777777777777743
No 311
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.83 E-value=2.7e+02 Score=33.26 Aligned_cols=76 Identities=8% Similarity=0.043 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS-HRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
+.....+.++..++++++..+....+++.+.++++..+..+....- ..+.+..+|..|.-.|.++...|..+++++
T Consensus 875 ~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~ 951 (1353)
T TIGR02680 875 TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEAL 951 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666666666666666666665444443333321 234445555555555555555555555444
No 312
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=52.79 E-value=1.3e+02 Score=24.69 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQ--KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+..+...+.+++..-++...++..+++.| ...+..+.+....+. ....+|.+..-.|+.+..+....-.=||.||-+
T Consensus 8 ~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~g 87 (106)
T PF05837_consen 8 LQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQALIVG 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556667777777777777777766 444445555555555 455666666667777777776665555555522
Q ss_pred HhhhcCCCCcc
Q 016463 366 AMTESDIPDDV 376 (389)
Q Consensus 366 ~~~~~~~~~~~ 376 (389)
.-||-++|.
T Consensus 88 --SgVdWa~D~ 96 (106)
T PF05837_consen 88 --SGVDWAEDP 96 (106)
T ss_pred --cCCCcccCH
Confidence 235666663
No 313
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.76 E-value=1.7e+02 Score=30.93 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 273 SDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQ 311 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (389)
+.....++++|+. ++.++..++++++..+..+..|+
T Consensus 70 ~~~~~~l~~~l~~---l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 70 PERLAELRKQIRE---LEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554444 34444445544444444444443
No 314
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=52.57 E-value=1.3e+02 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSK 315 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (389)
.+-.+|.++.+.++.+-..+.+|+-+.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777776666555
No 315
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.54 E-value=1.5e+02 Score=28.46 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALI-NAKKLSSHRQ----------KQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
|+..|...+....+|+...|.|.-+++ +..|+.-+|- .-|..+|..--|++.|.-.|..
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666777777777744333 3334433332 3344555555555555444433
No 316
>PRK14161 heat shock protein GrpE; Provisional
Probab=52.24 E-value=1.8e+02 Score=26.28 Aligned_cols=67 Identities=9% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-----SHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
.+.+-+.+.++++++.++++.+|.++.+.+--...+.+|-. ..+.-.+.+|-+.||-|-|.-++.-.
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~ 87 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALA 87 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 44455666667777777777777777777766666555543 33446678888999999998888543
No 317
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=52.19 E-value=3.5 Score=38.43 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=59.1
Q ss_pred CCCcEEEEcC----CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 37 DDESSVYVGG----LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 37 ~~~~~lfVgn----Lp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
....+++.|+ |...++++.+...|+.-|.|..+.+..+..++.+.++||.|.-....-.|+..+.+..+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3446677777 77778888899999999999999999888888888999999888887788877766655444433
No 318
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=52.10 E-value=21 Score=35.31 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.5
Q ss_pred EEEEEc
Q 016463 83 GFVTFG 88 (389)
Q Consensus 83 aFVeF~ 88 (389)
.||-|.
T Consensus 176 v~vry~ 181 (367)
T KOG0835|consen 176 VFVRYS 181 (367)
T ss_pred eeeecC
Confidence 344443
No 319
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.07 E-value=1.3e+02 Score=29.69 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSK 315 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (389)
.+..||..|++.+++.+..+.+|++++.
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888774
No 320
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=51.94 E-value=3.2e+02 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
..|..+.+-+.+++..-+..+.....|+..|.++-.|+
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL 318 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL 318 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555666666666666666666554
No 321
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.85 E-value=1.1e+02 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.511 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
-.++..+..+++-+.+++..+.+|+++...|+..+
T Consensus 70 ~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 70 TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666555444
No 322
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.77 E-value=28 Score=33.94 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC--------CCCCceEEEEEEcChHHHHHHHHhcCC------ce
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--------STRGKCYGFVTFGNPRSAVDAINDMNG------RT 104 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~--------~~~~kG~aFVeF~~~~~A~~Al~~l~g------~~ 104 (389)
.+.|.+.|+...++-..+...|.+||+|+.|.++.+. .........+.|-+.+.|...+..+-. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3567778899889888899999999999999998876 123456788999999988876542211 23
Q ss_pred eccEEEEEEEec
Q 016463 105 IDGRVVRVSEVA 116 (389)
Q Consensus 105 i~Gr~l~V~~a~ 116 (389)
+....|.|.|+.
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566777777764
No 323
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.68 E-value=75 Score=36.74 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH-------RQKQLTKLYKCFIQVNEYAERLKSCE------ 356 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~------ 356 (389)
+..|.+|-+.+++.+.++.++..+.-++|.-|...+.-... =|..+.+|.+.+.+|.+--+.||.+.
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~ 1303 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFN 1303 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHH
Confidence 34455555555555555555555555555444422222222 23344444555555556566665443
Q ss_pred ---------HHHHHHHHHHhhhcCCC
Q 016463 357 ---------REFQSIVDAAMTESDIP 373 (389)
Q Consensus 357 ---------~~~~~~~~~~~~~~~~~ 373 (389)
-|++..|+++..|+.-+
T Consensus 1304 ~~r~a~~~s~ea~~r~~~s~~~l~s~ 1329 (1758)
T KOG0994|consen 1304 STRHAYEQSAEAERRVDASSRELASL 1329 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccch
Confidence 24555666666665543
No 324
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=51.53 E-value=69 Score=29.04 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=4.6
Q ss_pred cEEEEcCCCC
Q 016463 40 SSVYVGGLPY 49 (389)
Q Consensus 40 ~~lfVgnLp~ 49 (389)
..|||.--|+
T Consensus 38 rsvWvArnPP 47 (195)
T KOG0107|consen 38 RSVWVARNPP 47 (195)
T ss_pred eeEEEeecCC
Confidence 4455544333
No 325
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.47 E-value=1.6e+02 Score=29.06 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016463 340 KCFIQVNEYAERLKSCEREFQS 361 (389)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
+.|-+++.+.+.|+..-.+|+.
T Consensus 140 ~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 140 RELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 326
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=51.38 E-value=95 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 016463 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (389)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 342 (389)
.+|+.+..=+|+.+.........-|.++.+|...+
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555443
No 327
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.32 E-value=2.2e+02 Score=33.09 Aligned_cols=81 Identities=30% Similarity=0.426 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTK----LYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
..+++++..++-.--.-+...+-+..+.+|||.++..+.+--+...+.+.+ .++|-.-+..++..|..|+.+|.-+
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~ 466 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEI 466 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555553333333444556666666666666666555555544433 3445555556666677777777666
Q ss_pred HHHHh
Q 016463 363 VDAAM 367 (389)
Q Consensus 363 ~~~~~ 367 (389)
.+++=
T Consensus 467 ~~~l~ 471 (1293)
T KOG0996|consen 467 LDSLK 471 (1293)
T ss_pred HHHHh
Confidence 55543
No 328
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.30 E-value=62 Score=30.86 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC-FIQVN 346 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 346 (389)
.|+.+|+.|+..|..+.+++.|--+ +|.++.+. .+-|++|.|+|+- ..||+
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdk---qisnLKad-----~e~~~~~ek~Hke~v~qL~ 280 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDK---QISNLKAD-----KEYQKELEKKHKERVQQLQ 280 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhh---hhhccCcc-----hhHHHHHHHHHHHHHHHHH
Confidence 3678888899999999888866444 44444433 2333677777775 33443
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.27 E-value=2.3e+02 Score=29.80 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA---------------KKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
...++.++..++..+...+..+.-++....-|+.....+ .++...-..+-..+.+...++.++..
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666555555555555555555554443211 11222222333333344444555555
Q ss_pred HHHHHHHHHHHH
Q 016463 351 RLKSCEREFQSI 362 (389)
Q Consensus 351 ~~~~~~~~~~~~ 362 (389)
.|+..+++|+.|
T Consensus 153 ~~~~~~~~l~~l 164 (525)
T TIGR02231 153 RIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
No 330
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.23 E-value=1.9e+02 Score=31.88 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
+.+.-|..+=-||......|+.=|+|+
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444
No 331
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.21 E-value=1.7e+02 Score=33.70 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCC
Q 016463 311 QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT-ESDIP 373 (389)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 373 (389)
+.++-+++.+....+|.-..=-..+|||.+...-+.+.-+++.+.- +.|+..+-. ++.+|
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er---~~lL~~ckl~~I~vP 908 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESER---HNLLSKCKLEDIEVP 908 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH---HHHHHHhhhcccccc
Confidence 3444455555555555555555788889888888888888776654 445555444 45543
No 332
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.08 E-value=1.5e+02 Score=32.40 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHHH-HH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA-----------KKLSSHRQKQLTKLYKCFIQVNEYA-ER 351 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 351 (389)
+....++..+-+|..+.+++.++..+|+.+.++|-+.+.-- ..|+. .-|-.|+..+.+|++.. .|
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl---~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSL---EKLEELREHLNELQKEKSDR 179 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888999999999999999999997776655 33333 23445566666666544 44
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 016463 352 LKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~ 372 (389)
|+. -.++..-|+.+|.++++
T Consensus 180 lek-v~~~~~~I~~l~~~Lg~ 199 (660)
T KOG4302|consen 180 LEK-VLELKEEIKSLCSVLGL 199 (660)
T ss_pred HHH-HHHHHHHHHHHHHHhCC
Confidence 443 45666777888887666
No 333
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=50.98 E-value=65 Score=30.52 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------------------------HHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---------------------------KQLTKLYKCF 342 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 342 (389)
+..+.+|+.+..+-+..+.+|.++.+.|+.+++.|+...-... ..|.-|-+||
T Consensus 28 r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~~~~~~~~e~~D~~~~~~Cv~Cg~~i~~~~a~kHmEkCf 107 (236)
T PF12269_consen 28 RKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQFTVDQDEEQNDDESEDDDLSIYCVTCGHEIPSKKALKHMEKCF 107 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccccceeeeeeeCCCcCCHHHHHHHHHHHH
Confidence 3445556666666677777888888888888888776655442 6788899999
Q ss_pred HHHHH---------------------HHHHHHHHHHHHHHHH
Q 016463 343 IQVNE---------------------YAERLKSCEREFQSIV 363 (389)
Q Consensus 343 ~~~~~---------------------~~~~~~~~~~~~~~~~ 363 (389)
...-. |+..-++.=+.|++|-
T Consensus 108 ~K~E~q~sfGs~~kt~i~g~~lFCd~yn~~~~TYCKRLrvlC 149 (236)
T PF12269_consen 108 AKYESQTSFGSIYKTRIEGNNLFCDFYNPQQGTYCKRLRVLC 149 (236)
T ss_pred HHHHhhcccCCCCcccccccchhhhhhhhhhccHHHHHHHhC
Confidence 87643 6666677777777775
No 334
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.84 E-value=87 Score=31.22 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016463 335 LTKLYK 340 (389)
Q Consensus 335 ~~~~~~ 340 (389)
|..|.+
T Consensus 48 Lk~L~~ 53 (330)
T PF07851_consen 48 LKELKK 53 (330)
T ss_pred HHHHHH
Confidence 333333
No 335
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=50.72 E-value=1.4e+02 Score=27.73 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 016463 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 341 (389)
...+|--..+|.|.++....+-.-.|--.+.+|+|.
T Consensus 61 ~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~ 96 (272)
T KOG4552|consen 61 TLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKN 96 (272)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334455567777888888777777787777777774
No 336
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=50.61 E-value=17 Score=39.32 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=5.3
Q ss_pred EEEEEcChHHH
Q 016463 83 GFVTFGNPRSA 93 (389)
Q Consensus 83 aFVeF~~~~~A 93 (389)
+||.|.++..+
T Consensus 695 ~~~k~~de~~~ 705 (877)
T KOG0151|consen 695 NPVKYDDEDRD 705 (877)
T ss_pred cccccchhhhH
Confidence 45555444433
No 337
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.15 E-value=2.5e+02 Score=27.19 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ 332 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 332 (389)
++..++..-..++..+..+.+.+-.....+..++.+.+.|...+...+.+..-++
T Consensus 75 ~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~ 129 (291)
T PF10475_consen 75 ELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQ 129 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666555566666666666665555555555544443
No 338
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=49.98 E-value=1.9e+02 Score=27.47 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
.+++.|..++.-|....++.+..+..|+++..-.++... +...--+| .+.|..+.+.-.+||..-.+|+.||
T Consensus 127 ~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~-~~~~D~eR-------~qty~~a~nidsqLk~l~~dL~~ii 198 (254)
T KOG2196|consen 127 LDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTY-LSRADVER-------EQTYKMAENIDSQLKRLSEDLKQII 198 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-hhhhhHHH-------HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555555555555555555555444433222 22222233 4567777888888999999999888
Q ss_pred HHH
Q 016463 364 DAA 366 (389)
Q Consensus 364 ~~~ 366 (389)
+.+
T Consensus 199 ~~l 201 (254)
T KOG2196|consen 199 KSL 201 (254)
T ss_pred HHH
Confidence 874
No 339
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.65 E-value=1.8e+02 Score=26.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016463 344 QVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
+++++...|.+|+++|..+++.+
T Consensus 44 ~i~~~~~~L~~~~~~L~~~~~~~ 66 (188)
T PF10018_consen 44 QIRDILKQLKEARKELRTLPDQA 66 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778888888888888433
No 340
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=1.5e+02 Score=24.68 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEER---------------VNVKEQL----VLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~----~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 338 (389)
++|-.++.-+.+..|++.|+++ +++...+ +..+-+..+.+|+++-...+-.++.+..|+||
T Consensus 30 kle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 30 KLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred HHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777788777743 2332222 23455666677777777777777777777777
Q ss_pred HHHHH
Q 016463 339 YKCFI 343 (389)
Q Consensus 339 ~~~~~ 343 (389)
+++|.
T Consensus 110 Q~~~q 114 (120)
T KOG3478|consen 110 QQAAQ 114 (120)
T ss_pred HHHhc
Confidence 77763
No 341
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=49.54 E-value=1.3e+02 Score=25.45 Aligned_cols=20 Identities=15% Similarity=0.597 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHH
Q 016463 346 NEYAERLKSCE--REFQSIVDA 365 (389)
Q Consensus 346 ~~~~~~~~~~~--~~~~~~~~~ 365 (389)
+|.++.+..|| +||...+.+
T Consensus 48 kDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 48 KDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHT-TTHHHHHHHHT-
T ss_pred HHHHHHHHhchhhHHHHHHHhc
Confidence 33445555553 555555444
No 342
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.37 E-value=3.6e+02 Score=28.87 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--hhHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKL--SSHRQKQLTKLYKCFIQ 344 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~--~~~~~~~~~~~~~~~~~ 344 (389)
.+.-++-+|....+.+-|.++++..+..++ |.+--.|+.. -+++|..|++--+.+++
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 344455677777778888888887777777 3333333332 35777666554444444
No 343
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=49.36 E-value=86 Score=32.97 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+...+.+.++++..||+++...+.+..|++- ++ .-+.+.|-.-..-+++.++....+|.+.-++.+-.-..||..
T Consensus 409 ~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~--~i---~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~ 483 (543)
T COG1315 409 VERLKELTEEISLHEERLKKLTKLLVALVKV--KI---ESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEE 483 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---HhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888777775 11 112222333333788999999999999999999888888887
Q ss_pred HHHHhhh
Q 016463 363 VDAAMTE 369 (389)
Q Consensus 363 ~~~~~~~ 369 (389)
++.-..|
T Consensus 484 le~~~~e 490 (543)
T COG1315 484 LEVVGIE 490 (543)
T ss_pred Hhhhccc
Confidence 7765555
No 344
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.21 E-value=48 Score=33.70 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHh
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I-~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~ 99 (389)
.+-...|-|-++|...-.++|...|..|+.- ..|.++.+ -.||-.|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 3445788899999998888999999999743 35666654 2799999999999999983
No 345
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=49.10 E-value=1.5 Score=44.28 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-CCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN-DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~-d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
..+-|.|+|+...++.|..++..||.+..|..+. +.. ....-|+|...+.+..||.+++|..+....++|.|-.
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4577899999999999999999999999886533 222 2345578999999999999999999999999998754
No 346
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.08 E-value=70 Score=26.68 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
-.++.+..++..++++++...+.+..|..+.+++.+++...+
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888877665554
No 347
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=48.94 E-value=41 Score=21.93 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
|+.||++|+..+-.=+....+|+.|.+.|
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L 30 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKEL 30 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 56677777765555555555555555443
No 348
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.93 E-value=2.7e+02 Score=33.09 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 282 SIQRREELKKEISHMEERVNVKEQLVLDLQK 312 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (389)
.++.+..++.++..|.+.++.....+.++..
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444444444444333
No 349
>PRK14140 heat shock protein GrpE; Provisional
Probab=48.86 E-value=2.1e+02 Score=26.17 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-----SHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+..|+.++.++++.++++.+|.++.+.+--...+.+|-. ..+...+.+|-+.||-|-|.-++...
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~ 105 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQ 105 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555666666666666655544444443322 23345677888888888888887643
No 350
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.52 E-value=2.4e+02 Score=26.59 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhcCCCCccc
Q 016463 359 FQSIVDAAMTESDIPDDVC 377 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~ 377 (389)
|..|+++...|++-+-...
T Consensus 151 ~r~vlea~~~E~~yg~~i~ 169 (251)
T PF11932_consen 151 FRRVLEAYQIEMEYGRTIE 169 (251)
T ss_pred HHHHHHHHHHHHHhCCcee
Confidence 4556666666655533333
No 351
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=48.05 E-value=1.2e+02 Score=22.85 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 338 LYKCFIQVNEYAERLKSCEREFQSIVD 364 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (389)
..+.-.-++.|...|..+|+.++.|+.
T Consensus 31 yeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 31 FERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566688999999999999998874
No 352
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.95 E-value=3.1e+02 Score=32.19 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=3.3
Q ss_pred hHHHHHHHH
Q 016463 90 PRSAVDAIN 98 (389)
Q Consensus 90 ~~~A~~Al~ 98 (389)
...|..|+.
T Consensus 551 ~~~a~~~i~ 559 (1163)
T COG1196 551 EEVAKKAIE 559 (1163)
T ss_pred hHHHHHHHH
Confidence 333333333
No 353
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=47.79 E-value=1.1e+02 Score=29.37 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 338 LYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
|.....++......|+..+.+|+.+-
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 104 LDDAKAAVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566666666666553
No 354
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.74 E-value=42 Score=27.46 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRRE---ELKKEISHMEERVNV----KEQLVLDLQKR 313 (389)
Q Consensus 274 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~l~~~ 313 (389)
+...+-|++...+. .++.+|..|.+.+++ +++++.+|+++
T Consensus 52 ~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 52 GAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555554433 334445555555555 45555555544
No 355
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.53 E-value=1.4e+02 Score=30.83 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQK 312 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (389)
....+..++..+++.+++-++.+..|++
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3355666677777777776666665555
No 356
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.33 E-value=3.7e+02 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 324 AKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
..++...|...+.+|.....+|+....-|...+
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555544433
No 357
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=46.81 E-value=2.1e+02 Score=30.87 Aligned_cols=8 Identities=50% Similarity=0.708 Sum_probs=3.0
Q ss_pred ccCCeEEE
Q 016463 62 KYGSVVAV 69 (389)
Q Consensus 62 ~~G~I~~v 69 (389)
++|++..|
T Consensus 85 ksgK~A~I 92 (1027)
T KOG3580|consen 85 KSGKVAAI 92 (1027)
T ss_pred hhccceeE
Confidence 33433333
No 358
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=46.79 E-value=77 Score=24.51 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
++-+...++-+..|++-.-.||+++ ....+...-|+.|...|..+|+.++.|+..
T Consensus 8 Eeal~~LE~Iv~~LE~~~l~Leesl--------------~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~ 62 (76)
T PRK14063 8 EEAISQLEHLVSKLEQGDVPLEEAI--------------SYFKEGMELSKLCDEKLKNVQEQMAVILGE 62 (76)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555555555555443 233455666889999999999999988854
No 359
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=46.70 E-value=89 Score=25.87 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDL 310 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 310 (389)
++.-.++.++..|++++.-|++.+..+
T Consensus 35 kpe~~lkEEi~eLK~ElqRKe~Ll~Kh 61 (106)
T PF11594_consen 35 KPEQVLKEEINELKEELQRKEQLLQKH 61 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666665555555554333
No 360
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=46.65 E-value=2.5e+02 Score=26.35 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 016463 270 DDNSDQVKELDRSIQRREELKKEISH-MEERV-NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (389)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
|...+-...+-.++...-.++.+|+. |.+++ +.-.....++.+..+.+++....|.|.-...+.++.|..+.|-+.--
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555666666666666665 44444 45666667777777888888888888777777788888877766665
Q ss_pred HHHHHHHH
Q 016463 348 YAERLKSC 355 (389)
Q Consensus 348 ~~~~~~~~ 355 (389)
..+.+..+
T Consensus 138 E~e~a~~~ 145 (239)
T cd07658 138 ENEKLQDQ 145 (239)
T ss_pred HHHHHHHH
Confidence 55555443
No 361
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=46.62 E-value=78 Score=24.54 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
....+.-.-++.|...|..+|++++.|++..
T Consensus 34 ~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~~ 64 (76)
T PRK14068 34 DLYQRGMKLSAACDTTLKNAEKKVNDLIKEE 64 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566778899999999999999998765
No 362
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=46.51 E-value=2.1e+02 Score=25.27 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 318 EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
++-.....++...+.+....+..|++.++++-+.+-.--+++..-+-.++.+
T Consensus 126 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~~~ 177 (191)
T cd07610 126 EEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAIKE 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666667777777777777776655444444443333333444
No 363
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.36 E-value=2.1e+02 Score=28.93 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ------KQLTKLYKCFIQVNEYAER 351 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 351 (389)
+++..++.-.....+++.+++..+.....+.++......|.+++...|.---.|. -+|.++.+++.+|+...-.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 016463 352 L 352 (389)
Q Consensus 352 ~ 352 (389)
+
T Consensus 347 M 347 (359)
T PF10498_consen 347 M 347 (359)
T ss_pred h
No 364
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=46.31 E-value=1.7e+02 Score=24.10 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 324 AKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.+.+|..=-.||..|-..|.++.+-++-+-..=..-+.+|.++
T Consensus 19 l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~I 61 (103)
T PF08654_consen 19 LRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAI 61 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHH
Confidence 3444555557899999999999999999888888877777654
No 365
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.18 E-value=20 Score=32.40 Aligned_cols=64 Identities=20% Similarity=0.432 Sum_probs=45.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHH
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~ 98 (389)
.......+++++++..++...+..+|..+|.+..+.+...... ....+.++.+.....+..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3456789999999999999999999999999977777665444 344445555554444444444
No 366
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.16 E-value=2.5e+02 Score=26.07 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016463 317 LEEALINAKKLSSHRQKQLTKLYKCFIQ-VNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (389)
|..+-...+++..+||.++..|...|.. |.+|....|.+.-.|+..+.+
T Consensus 63 L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~a 112 (211)
T cd07598 63 LKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTA 112 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557788999999999999998875 677777777766666654443
No 367
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.05 E-value=81 Score=32.93 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e 318 (389)
.|++.+...+||++++.+|+
T Consensus 70 ALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666654
No 368
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.84 E-value=1.2e+02 Score=28.88 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
+.++++++.++.+++++++.+..|++-..++...
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888888888888888888777777643
No 369
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=45.51 E-value=1.7e+02 Score=24.05 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
..|+..+..|++..+.++..+...+.||..+|.-
T Consensus 84 ~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~ 117 (143)
T PF05130_consen 84 EELQALWRELRELLEELQELNERNQQLLEQALEF 117 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888888888887777654
No 370
>PRK14158 heat shock protein GrpE; Provisional
Probab=45.47 E-value=2.4e+02 Score=25.89 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-----SHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
+++++++.++.+.+|..+.+.+--...+.+|-. ..++..+.++-+.||-|-|.-++.-
T Consensus 45 le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 107 (194)
T PRK14158 45 LEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERAL 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 444444444555555555544444444433322 2233456677777777777777753
No 371
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.44 E-value=2.4e+02 Score=29.04 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 344 QVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (389)
++++..+.|+..|.+|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 81 EIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 372
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=45.42 E-value=1.2e+02 Score=26.08 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
-..+.+.|.+...|-..|+.++++=.-+...|.+|+..-.+..+.-+-|...|.
T Consensus 78 ~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~ 131 (142)
T PF04048_consen 78 LSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEE 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888998888888888899999999999999998888888888774
No 373
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.41 E-value=1e+02 Score=25.35 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=5.8
Q ss_pred CCcccccCC-CCCC
Q 016463 373 PDDVCVKDG-GPRT 385 (389)
Q Consensus 373 ~~~~~~~~~-~~~~ 385 (389)
.++.+++.| .|+|
T Consensus 91 ~~~~~~~~~~~~~~ 104 (105)
T PRK00888 91 ASKRAAAAGQPPRT 104 (105)
T ss_pred CcCCCCCCCCCCCC
Confidence 344444444 3444
No 374
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=45.16 E-value=49 Score=25.23 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHHHhhccC-CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 54 ~dL~~~F~~~G-~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+|.+.|...| .+..|.-+....+ .+-..-||+.....+... .|+=..|+|.+|.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35778888888 6778888877776 444566787776544443 45556788999888754
No 375
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.90 E-value=1.8e+02 Score=25.68 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+...+.++.+|....+.|+.++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444443333
No 376
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=44.68 E-value=73 Score=28.99 Aligned_cols=61 Identities=30% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 308 LDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 308 ~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+|-+..+++ |.+.++ +..-|+..+.+|.++-..=.=..+-++..|.++|.|.+..+.++|
T Consensus 111 ~elvK~~k~~~E~aKv~---iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkltd~~i~~id 172 (185)
T PRK00083 111 KELVKQVKKEAEEAKVA---IRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKID 172 (185)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 555554 445566665555543210000245567777888888887777765
No 377
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=44.65 E-value=1.6e+02 Score=23.57 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAK-------KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
+..+......|+.+..+|+.++..|. +.--.....+.+|...+..=.+..+.|+..|.++...|..+=
T Consensus 19 ~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~E 93 (96)
T PF08647_consen 19 ADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLE 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444333 333334466777777777777888888888888888887653
No 378
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=44.61 E-value=1.2e+02 Score=24.72 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 016463 332 QKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
|..|-.|-.-..-|++++=+|++++|=|-..|..+|.-+-+
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSV 109 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhh
Confidence 34456666677889999999999999999999999987544
No 379
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.40 E-value=5e+02 Score=29.11 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
...--+..+|..|.+.++.++..+.-||+++-.||+.+
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777788899999999999999988887666
No 380
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.31 E-value=3.1e+02 Score=33.13 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS 329 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 329 (389)
++...+..+..-...+.||..+..+|+.+...+.+.-.
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555556666666666655555555433
No 381
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=44.28 E-value=1.9e+02 Score=26.80 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDI 372 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (389)
.++.--+.+-.+++-+++..+.+.-..+--.-...+-+|.++..+|..+..||.+....|+--|--+-.+-|+
T Consensus 9 ~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~ 81 (204)
T COG5491 9 AKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDM 81 (204)
T ss_pred HHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3444445555666667666666653333333346677888999999999999999888887666555444444
No 382
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=44.10 E-value=4.3e+02 Score=28.25 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
|.+.+....+...+..++..++...+.++
T Consensus 398 ~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 398 INESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333443333333
No 383
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=44.04 E-value=3.9e+02 Score=31.32 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=3.1
Q ss_pred EEEEcC
Q 016463 84 FVTFGN 89 (389)
Q Consensus 84 FVeF~~ 89 (389)
+|.|..
T Consensus 598 li~~d~ 603 (1163)
T COG1196 598 LIDFDP 603 (1163)
T ss_pred HhcCCH
Confidence 555553
No 384
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.89 E-value=2.7e+02 Score=30.61 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
..+|+....+|..++...++....++.....|.....+.+.....|+..++.|++||+++
T Consensus 105 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il~~~ 164 (779)
T PRK11091 105 NVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFLDAS 164 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444566666665555554444445555566677777777777788888888899988775
No 385
>PRK14141 heat shock protein GrpE; Provisional
Probab=43.88 E-value=2.6e+02 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 330 HRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
.+...+.+|-+.||-|-|.-++.-
T Consensus 75 ~~~~a~~~~~~dLLpViDnLerAl 98 (209)
T PRK14141 75 ARAYGIAGFARDMLSVSDNLRRAL 98 (209)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHH
Confidence 344556777788888888777754
No 386
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.81 E-value=3.8e+02 Score=27.50 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQ--------LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
....+++.+...|++.++..+. ....||++.-+.|.+.....-+..-||..+..|...|..+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445566666666655544443 23345555555555666666777789988888887775544
No 387
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.58 E-value=1.2e+02 Score=29.88 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
..-.+.+..++.++|+.+.....+ +...+.-.|+..+..
T Consensus 153 ~~~le~i~~~~~~ie~~l~~~~~~--~~l~~l~~l~~~l~~ 191 (322)
T COG0598 153 FPVLEQIEDELEAIEDQLLASTTN--EELERLGELRRSLVY 191 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHH
Confidence 355566677777777665553333 233334444333333
No 388
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.54 E-value=2.3e+02 Score=27.66 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ----KQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
..........++++-...|+..++...++-..-| ..|+-|...+.|+...-++|++.=.-++.||
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333 3455555555566666666776666666555
No 389
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.49 E-value=1.7e+02 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (389)
++.-.....+.+|+.+...+..+...+++
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 33344444455555555555544444443
No 390
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.25 E-value=4e+02 Score=27.61 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.++.+|+.-.-|+-+.+..|++|--.|++|.+-...|
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677788888888999999999999999998877665
No 391
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.20 E-value=3.2e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 338 LYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|+++|.+--.+--.|--+|++|...
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344433333444455556666543
No 392
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.97 E-value=4.2e+02 Score=29.24 Aligned_cols=48 Identities=27% Similarity=0.272 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+-+.+..++.|..+.+.++.+.|++.+.--..-+.-++-++.+||+++
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~ 533 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE 533 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556677777777777666555444444444444455554444
No 393
>smart00338 BRLZ basic region leucin zipper.
Probab=42.85 E-value=1e+02 Score=22.63 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS 329 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 329 (389)
+..+..|+.+++....+..+|..+...|+.+....+.+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 394
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.80 E-value=2.4e+02 Score=25.82 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
.+++.-.+.|....+...||...-+..--|+.+.-..|.+...++..+++++..+...++.|+
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~ 197 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKEL 197 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443344556666677788888888888888888888777775
No 395
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=42.74 E-value=2.3e+02 Score=26.89 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEE---RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-KQLTKLYKCFIQVNEYAER 351 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 351 (389)
..++.+.|+.-+.+..++..|++ ..=+.+.+...|+++..+|.+.+..+.. +|- ..+..|++-+.||++.-+-
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q---~~~~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQ---QHYVAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888899999988885 4556677788889998888777665432 111 3455677777777766555
Q ss_pred HHH
Q 016463 352 LKS 354 (389)
Q Consensus 352 ~~~ 354 (389)
|..
T Consensus 240 L~~ 242 (289)
T COG4985 240 LRA 242 (289)
T ss_pred Hhh
Confidence 543
No 396
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.64 E-value=2.9e+02 Score=29.52 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
...++++.+....-..++.+....+...+.++.-+..++++||+++.-.++ +...|+..|..++...+.--..
T Consensus 126 r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~-------en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 126 RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKA-------ENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhcC
Q 016463 356 EREFQSIVDAAMTESD 371 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (389)
-.++|.-|.++|.|++
T Consensus 199 r~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHhHHHHHHHHHH
No 397
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.61 E-value=3.1e+02 Score=28.06 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLD----LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~----l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
..|++.++.=+..... |+.....+.....++.++-..=...-..|.......+++.+++..|
T Consensus 258 ~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~ 323 (412)
T PF04108_consen 258 KELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEE 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443344333 4444444444444444333333333334444444555555544443
No 398
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=42.55 E-value=2.9e+02 Score=29.42 Aligned_cols=80 Identities=26% Similarity=0.328 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVD 364 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (389)
..+.+.+.+.++.+.++++.+--++||.-.+-++.++....+---.=|.-|+.|-|-=++-++..+++++.=.+++-+|.
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777778888888888888888888888877777776666777888888888888888888877777666554
No 399
>PRK14155 heat shock protein GrpE; Provisional
Probab=42.54 E-value=2.7e+02 Score=25.86 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~ 353 (389)
-.+.+|-+.||-|-|.-++.-
T Consensus 60 ~a~~~~~~~LLpV~DnLerAl 80 (208)
T PRK14155 60 YAIQKFARDLLGAADNLGRAT 80 (208)
T ss_pred HHHHHHHHHHhhHHhhHHHHH
Confidence 445566667777766666644
No 400
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=42.37 E-value=2.3e+02 Score=30.44 Aligned_cols=74 Identities=30% Similarity=0.354 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHH--------HHHHHHHHHHH--------
Q 016463 282 SIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA-KKLSSHRQK--------QLTKLYKCFIQ-------- 344 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~--------~~~~~~~~~~~-------- 344 (389)
-|..-|.|..|-.+|..+++.-++-..-||+++.+||.++-.+ .++--.||+ +-|-.-|-|-.
T Consensus 327 LIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH
Confidence 3456677778888888999999999999999999997766555 456666663 33444444544
Q ss_pred -HHHHHHHHHHH
Q 016463 345 -VNEYAERLKSC 355 (389)
Q Consensus 345 -~~~~~~~~~~~ 355 (389)
-+-|.|+|-..
T Consensus 407 eRNqYKErLMEL 418 (832)
T KOG2077|consen 407 ERNQYKERLMEL 418 (832)
T ss_pred HHhHHHHHHHHH
Confidence 45677777533
No 401
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=42.22 E-value=3.5e+02 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEY-AERLKSCEREFQSIVDAA 366 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 366 (389)
..|+.++..|.+++.. .+..+.-|.-||.|..+.
T Consensus 265 ~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay 299 (337)
T cd09234 265 KALTEANAKYAPVRKALSETKQKRESTISSLIASY 299 (337)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5667777777777766 556666666666666554
No 402
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=42.10 E-value=85 Score=28.30 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEY-AERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+|-+..+++ |.+.++ +..-|+..+.+|.+.-- -... .+-++..|.++|.|.+....++|
T Consensus 103 elvK~~k~~~E~aKv~---iRniRr~~~~~iKk~~k-~~~iseD~~k~~~~~iQkltd~~i~~id 163 (176)
T TIGR00496 103 ELVKHAKKIAEQAKVA---VRNVRRDANDKVKKLEK-DKEISEDEERRLQEEIQKLTDEYIKKID 163 (176)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 555553 34455555555443310 0111 35667777777777777776654
No 403
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=42.05 E-value=2.8e+02 Score=25.54 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI--NAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
..++.+.--+.-.+.|...++-++.-+.+...+.+.+.+|++..+ .|.+| -..+.+.|+.|..+.+.=..+=..
T Consensus 69 ~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l----~~~~~~ry~~~~~l~~~Y~~~l~~ 144 (204)
T PF10368_consen 69 LSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEKLKKQAKEL----NEAMKKRYKSYDKLYKAYKKALEL 144 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555544432 12222 134445666666665544444455
Q ss_pred HHHHHHHH
Q 016463 356 EREFQSIV 363 (389)
Q Consensus 356 ~~~~~~~~ 363 (389)
|++|=.++
T Consensus 145 ekely~~L 152 (204)
T PF10368_consen 145 EKELYEML 152 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 404
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=41.97 E-value=66 Score=24.25 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.7
Q ss_pred HHHHHHhhccC-CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 54 ~dL~~~F~~~G-~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
++|.+.|...| .|..|.-+....+ ...-.-||+++...+... .++=..|.+..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 45777777777 6777777776645 556678888886655333 355567889998888644
No 405
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=41.66 E-value=3.6e+02 Score=29.28 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQK-QLTKLYKCFIQ 344 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~ 344 (389)
|.....+.+..+|++.+..+++.. -..-.|+||+++..-+.|.+..-. .|.+|--.+.+
T Consensus 397 ql~~qa~ah~dhik~vvr~q~q~~--~~e~~~~~~e~~l~ernl~~~qvg~aL~rLrgie~a 456 (657)
T KOG1854|consen 397 QLKRQAKAHLDHIKDVVRQQEQLL--TIEFKQKLEEAVLQERNLHSSQVGKALSRLRGIEQA 456 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhcchHhHHHHHHHHHHhHHHH
Confidence 556666666777777666666655 334445777777777776655442 44444433333
No 406
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.46 E-value=1.6e+02 Score=22.53 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+.|.....|+-++..++++-.....+..+|...+++|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444
No 407
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.26 E-value=4e+02 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
-..+.+++++..+..+-+...++...|+++.+.+......|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44556666777777666666666667777666665555443
No 408
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.19 E-value=3.8e+02 Score=30.80 Aligned_cols=82 Identities=26% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK------KLSSHRQ----KQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
-|-+++-+|++++....+...+|+.-++.|.-++.++- -.+..|| -.+.+|--.+-||...++.|+.--+
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777666666666666666532222211 1223333 2233444444555566666665555
Q ss_pred HHHHHHHHHhhh
Q 016463 358 EFQSIVDAAMTE 369 (389)
Q Consensus 358 ~~~~~~~~~~~~ 369 (389)
+|..+++-+..|
T Consensus 492 nlnk~L~~r~~e 503 (1195)
T KOG4643|consen 492 NLNKSLNNRDLE 503 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 409
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.11 E-value=2.2e+02 Score=24.08 Aligned_cols=30 Identities=10% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKR 313 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (389)
........++..+.++++.+.....+.|++
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544
No 410
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=41.07 E-value=79 Score=33.71 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.3
Q ss_pred hhhcCC
Q 016463 367 MTESDI 372 (389)
Q Consensus 367 ~~~~~~ 372 (389)
|.+-||
T Consensus 381 ~~~dd~ 386 (752)
T KOG0670|consen 381 DFEDDM 386 (752)
T ss_pred hhhhhh
Confidence 333333
No 411
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=41.07 E-value=88 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 295 HMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (389)
.|..++++-+..+.++|.+.+.||.++..+..
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777777666555544
No 412
>PRK01156 chromosome segregation protein; Provisional
Probab=40.97 E-value=4.3e+02 Score=29.81 Aligned_cols=6 Identities=0% Similarity=0.246 Sum_probs=2.6
Q ss_pred EEEcCC
Q 016463 42 VYVGGL 47 (389)
Q Consensus 42 lfVgnL 47 (389)
|.|.|+
T Consensus 6 l~l~NF 11 (895)
T PRK01156 6 IRLKNF 11 (895)
T ss_pred EEEeCc
Confidence 444443
No 413
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=40.97 E-value=15 Score=40.38 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEER--VNVKEQLVLDLQK 312 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 312 (389)
-|.+..++.+..|++. ++.--+|+.-|-|
T Consensus 462 ~ms~l~~ka~~l~ad~~~~~D~~qhp~~llK 492 (1194)
T KOG4246|consen 462 LMSGLSRKALELLADDKFFEDRIQHPCNLLK 492 (1194)
T ss_pred hhhHHHHHHHHHhcCccccccccccHHHHHH
Confidence 5666677777777755 5555555555544
No 414
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.72 E-value=3.5e+02 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 344 QVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (389)
||..|...|...|+||+.+-
T Consensus 103 Ql~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 415
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=40.58 E-value=3.1e+02 Score=25.68 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSK--------KLEEALINAKKLSSHRQ-----KQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~--------~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
|..|+.++|.-.+.+..+++..+ -|+-....++||.-.-| +.-.+|-.+ +++.|++.+..++=+
T Consensus 96 i~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~---~e~v~~k~~ele~~~ 172 (223)
T cd07605 96 ILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQA---LEELNDKQKELEAFV 172 (223)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHH---HHHHHHHHHHHHHHH
Confidence 34455666655555555554333 23333334444443322 355555443 455555555555444
Q ss_pred HHHHHHHhhh
Q 016463 360 QSIVDAAMTE 369 (389)
Q Consensus 360 ~~~~~~~~~~ 369 (389)
+.-+..||.|
T Consensus 173 ~~~lr~al~E 182 (223)
T cd07605 173 SQGLRDALLE 182 (223)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 416
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.48 E-value=1.6e+02 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 016463 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (389)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 341 (389)
|+.+..=.|+.+....+.-..-|+++..|...
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555555544
No 417
>PF15294 Leu_zip: Leucine zipper
Probab=40.00 E-value=1.8e+02 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
..-..|+.|+..|-.--+.|...++||-..|
T Consensus 219 ~L~e~L~~~KhelL~~QeqL~~aekeLekKf 249 (278)
T PF15294_consen 219 ALEETLQSCKHELLRVQEQLSLAEKELEKKF 249 (278)
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhhHHHHh
Confidence 3334555555555555555555555554444
No 418
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.99 E-value=2.1e+02 Score=26.39 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 343 IQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~ 362 (389)
-||.-..+.|++-++||+.|
T Consensus 174 ~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 174 EQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666654
No 419
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.96 E-value=2.4e+02 Score=24.85 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.+..++..++.+|+.....+..|++...-.|++.
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk 57 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELK 57 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 3344555555555555555555555433334333
No 420
>PRK09039 hypothetical protein; Validated
Probab=39.94 E-value=4e+02 Score=26.63 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (389)
-++...++++..|......||.++.++..-...-+.++..|...+.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666555555555555544433
No 421
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=39.65 E-value=2.6e+02 Score=27.36 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS---SHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
++-.++.++++.++..+++++++-.... ++....|...+.....+. ..=+..+.+|.+.|. +-.-+=.-=|
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~---~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~---~~k~rG~wGE 75 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQR---SEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK---NSKTRGNWGE 75 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---CCCchhhHHH
Q ss_pred HHHHHHHHHH-hhh
Q 016463 357 REFQSIVDAA-MTE 369 (389)
Q Consensus 357 ~~~~~~~~~~-~~~ 369 (389)
..|..||..+ |.+
T Consensus 76 ~~Le~iLe~~gl~~ 89 (304)
T PF02646_consen 76 MQLERILEDSGLPE 89 (304)
T ss_pred HHHHHHHHHcCCCc
No 422
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=39.59 E-value=1.6e+02 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 337 KLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
.+..|..++.+++.+|...+.+|+.|-
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888887753
No 423
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=3.1e+02 Score=25.22 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL-------TKLYKCFIQVN 346 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 346 (389)
-+.++.+...++.++.++.+.+.++-...+.||.....-+.+.-.|+..| -||-+.|-+.+
T Consensus 65 ~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~re~~l~~~qae~~klv~iY~~Mk 132 (192)
T COG3334 65 ADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGKLVKIYSKMK 132 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcCC
Confidence 34555555666666666666666666666666666555554444444333 44545444444
No 424
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.38 E-value=5.2e+02 Score=32.14 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=15.2
Q ss_pred eEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 81 CYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 81 G~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
-|.-|.|-..+.....+..++.....-
T Consensus 635 ~F~Tvs~~~keql~~Lm~~l~~T~phF 661 (1930)
T KOG0161|consen 635 SFRTVSQLYKEQLNKLMTTLRSTHPHF 661 (1930)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCce
Confidence 344455556666666666666554443
No 425
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.32 E-value=2.8e+02 Score=27.86 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 317 LEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
.+.+++.-.||-..=..--.-|-+.=++-+-..+|+-+|+.||..|-
T Consensus 331 e~~l~A~~~kl~~ew~~~~eal~~rQl~~qlv~er~~ti~~el~~l~ 377 (418)
T KOG4570|consen 331 EERLKALHSKLQAEWKIESEALLSRQLTTQLVKERLSTIEAELIALY 377 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544333333333333444555678888888887764
No 426
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=39.30 E-value=4.6e+02 Score=27.59 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-KQLTKLYKCFIQVNEYAERL 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 352 (389)
+-++-...++.......+|+..|+.-++.-.+-+.+-.++.++|..+|+....+.+.-- ..|.-+-.-|..|++
T Consensus 123 ~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~----- 197 (508)
T PF00901_consen 123 KVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKN----- 197 (508)
T ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHhhh-cCCCCcc
Q 016463 353 KSCEREFQSIVDAAMTE-SDIPDDV 376 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~~~~~ 376 (389)
..|.|=+.|..-|+.| +||+-|+
T Consensus 198 -aIe~Er~~m~EEAiqe~~dmsaeV 221 (508)
T PF00901_consen 198 -AIEVEREGMQEEAIQEIADMSAEV 221 (508)
T ss_pred -HHHHHHhhHHHHHHHHHhcccHHH
No 427
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.14 E-value=3.5e+02 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 344 QVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
+|....+.|+..-++|+.+++.++.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 428
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=39.12 E-value=3.6e+02 Score=26.81 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE---REFQSIVDAAMTE 369 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 369 (389)
++-+.+++..+.+|+....++.... ......+.|++.|.+|..+|....+....|..-. .+|+.+|.....+
T Consensus 257 ~~~~~~Q~~ll~~i~~~n~~f~~~~-~~~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kFY~dL~~~~~~l~~~ 331 (339)
T cd09238 257 SKNISSQDDLLSRLRALNEKFSQIF-DVEGWRAATESHATQIRAAVAKYRELREGMEEGLRFYSGFQEAVRRLKQE 331 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666766666553321 1234455677888888777766666655554332 4566666655544
No 429
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.08 E-value=5.4e+02 Score=30.50 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSK-------KLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
...+++-..--.++..++++.+...+++.+.|.+.. .||..+....+....=.+-|..|.+...+|+......
T Consensus 198 ~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~ 277 (1294)
T KOG0962|consen 198 SQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEH 277 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445445555566666777777777777776654 3455566666666666677777777777888777788
Q ss_pred HHHHHHHHHHHHHHh
Q 016463 353 KSCEREFQSIVDAAM 367 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~ 367 (389)
+.|..+++.|-..+-
T Consensus 278 ~~l~~~~~~l~~~i~ 292 (1294)
T KOG0962|consen 278 KNLKKQISRLREKIL 292 (1294)
T ss_pred HHHHHHHHHHHhhcc
Confidence 888877777655544
No 430
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.92 E-value=1.5e+02 Score=34.56 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 342 FIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
|.|+-+-..+.-.+.-+|-++|+.
T Consensus 1309 ~~~s~ea~~r~~~s~~~l~s~~~~ 1332 (1758)
T KOG0994|consen 1309 YEQSAEAERRVDASSRELASLVDQ 1332 (1758)
T ss_pred HHHHHHHHHhhhhhhhcccchhhh
Confidence 333333333333344444444443
No 431
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=38.84 E-value=96 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 318 (389)
+...|+..+++++++.+.++..++.+...++
T Consensus 160 p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~ 190 (475)
T PF10359_consen 160 PRRVQIELIQERLDELEEQIEKHEEKLGELE 190 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4455666777777777777766666655554
No 432
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=38.79 E-value=86 Score=28.30 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=33.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE-YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+|-+..+++ |.+..+ +..-|+..+.+|.+.-.. .. -.+-++..|+++|.|.+..+.++|
T Consensus 108 ~lvK~~k~~~E~~Kv~---iRniR~~~~~~lKk~~k~-~~iseD~~k~~~~~iqkltd~~i~~id 168 (179)
T cd00520 108 ELVKDAKKIAEEAKVA---IRNIRRDANDKIKKLEKE-KEISEDEVKKAEEDLQKLTDEYIKKID 168 (179)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 555555 445556555555543110 00 345667778888888888877765
No 433
>PHA01750 hypothetical protein
Probab=38.11 E-value=99 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQK 312 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (389)
.+-++.|++.++-+..+-++.+.|+.+
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444333333334444433
No 434
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.05 E-value=2.7e+02 Score=24.79 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 301 NVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~ 320 (389)
+..+.+..+||+++..||.+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 435
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=37.84 E-value=1.8e+02 Score=31.61 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
|||+|..+..+...-..-+.-. |.-|..|.+| .++|..||+||+.-...|-.-||.|
T Consensus 408 ~eeelirrR~eelrHa~DIR~~YE~KLertN~l-------y~eLs~cm~qLelkEkElaerEq~l 465 (904)
T KOG4721|consen 408 LEEELIRRRREELRHALDIREHYERKLERTNNL-------YMELSACMLQLELKEKELAEREQAL 465 (904)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
No 436
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.79 E-value=3.8e+02 Score=25.82 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
...+.++..+...+...+..+..|+.+...||..+..
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 3444444444444445555555555555555444433
No 437
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.52 E-value=3.3e+02 Score=25.02 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+-|-.-++..+.....|+..+.+|-..+.++.-.+.+=.--++.|.+++--++---+..|+.+.||..|
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledL 72 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDL 72 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 438
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=37.41 E-value=1.9e+02 Score=22.96 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHR-QKQLTKLYKCFI 343 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (389)
|..||+.+++-.+...+|++-..+++.....-.+|..+= -.+-+++|..+.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e~~e 53 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYEASE 53 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHHHHh
Confidence 556777777777777777777777777777777777665 455555555543
No 439
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.17 E-value=3.3e+02 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~ 353 (389)
.+.+|-+.||-|-|.-++.-
T Consensus 87 a~~~~~~~LLpV~DnLerAl 106 (194)
T PRK14162 87 ESQSLAKDVLPAMDNLERAL 106 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHH
Confidence 35566667777766666643
No 440
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.99 E-value=2.3e+02 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
.+|..|.+....|-+.|..|+..++.|...+.-.-.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356667777778888888888888888888776655
No 441
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.81 E-value=3.8e+02 Score=30.72 Aligned_cols=14 Identities=0% Similarity=0.062 Sum_probs=6.9
Q ss_pred cChHHHHHHHHhcC
Q 016463 88 GNPRSAVDAINDMN 101 (389)
Q Consensus 88 ~~~~~A~~Al~~l~ 101 (389)
.+.++-...+..+.
T Consensus 484 ~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 484 CDSEDYLLFVKKIK 497 (1072)
T ss_pred echHHHHHHHHHhh
Confidence 44555555555443
No 442
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=36.76 E-value=3.4e+02 Score=26.19 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 016463 311 QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (389)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
+-++.+||-+|+..++.|-.=...-.-||+.+.+|-+
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLde 271 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDE 271 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 4456677777777777776666555566655554443
No 443
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.68 E-value=1.8e+02 Score=21.80 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
....|...++..++-+++....+.+.|+.+.+|+.++..
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777655443
No 444
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=36.63 E-value=2.7e+02 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
..|+..+|-+-..=+.+.+||+-++..||++.-.++.|-
T Consensus 10 Q~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~ 48 (134)
T PF08232_consen 10 QTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLK 48 (134)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444445556666666666666665555443
No 445
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=36.38 E-value=4.3e+02 Score=26.04 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC---EREFQSIVDAAMTE 369 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 369 (389)
|+.-+..++..+.+|+....++...... ......|+.+|.+|..+|....+..+.|..- =..|..+|.....+
T Consensus 259 i~~~~~~Q~~ll~~i~~~~~~f~~~~~~-~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~~ 334 (342)
T cd08915 259 VEKTKKKQIELIKEIDAANQEFSQVKNS-NDSLDPREEALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLEE 334 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666555555332221 4456677788888877776666666555433 34555555554443
No 446
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.28 E-value=3.6e+02 Score=28.87 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
...+.+..+|++|=+-++.+-.-.....+....|.+.+..+.+.+.+=...+..|...|.==++..+..+..+++|+.|.
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~ 357 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELE 357 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555566666666666665555556666666666332334455555555555443
Q ss_pred H
Q 016463 364 D 364 (389)
Q Consensus 364 ~ 364 (389)
.
T Consensus 358 ~ 358 (560)
T PF06160_consen 358 K 358 (560)
T ss_pred H
Confidence 3
No 447
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.94 E-value=2.3e+02 Score=22.72 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
..+..|+.+.....+..-.+.+....|..++-....+-+.-...+.+|.. .=.++...|+..|+||
T Consensus 31 ~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~---~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 31 QKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE---TEKEFVRKLKNLEKEL 96 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHhhccC
Confidence 33344444555555566666666667777766666666666666777766 3455666777777664
No 448
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.82 E-value=3.1e+02 Score=29.26 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q 016463 353 KSCEREFQSIVDAAMTESDIP 373 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ 373 (389)
+..-..|...|...|..++|+
T Consensus 374 ~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 374 RKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344566777788888777775
No 449
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.62 E-value=5.8e+02 Score=29.14 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
|+-.+.+|-+.++....|+.+=...--||+|-+-..+.+++-|+.--.
T Consensus 373 lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 373 LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE 420 (1243)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444556666777777777776665556666666555555555544433
No 450
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=35.57 E-value=4.6e+02 Score=26.14 Aligned_cols=53 Identities=23% Similarity=0.135 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
+..+-..+..+...-..=-..|+..+..|++++......+..|+-||.|-.+.
T Consensus 263 f~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~ay 315 (353)
T cd09236 263 YDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKGDPATKERERALQSLDLAY 315 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHH
Confidence 44443333333333222335667777777777777666666666666665543
No 451
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=35.50 E-value=3.5e+02 Score=24.77 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
.+|.+++.++..|..-...|-++.
T Consensus 81 ~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 81 QEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555444443333
No 452
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=35.37 E-value=2.4e+02 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
..+-...++++++..++.....||++...++.+
T Consensus 140 ~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~ 172 (192)
T COG5374 140 KMEADSTDLKARLRKAQILLEGLQKNQEELFKL 172 (192)
T ss_pred hhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444333
No 453
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=35.28 E-value=4.2e+02 Score=25.53 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHhhhcCC
Q 016463 312 KRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAER-----LKSCEREF-QSIVDAAMTESDI 372 (389)
Q Consensus 312 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~ 372 (389)
+...+||+.+..++-.--+=++++.+|-++-..|. -..| |...|+.| |+|--.||.|+..
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE-rakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE-RAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788888777777777777777765533331 1111 23445555 5555667777443
No 454
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.22 E-value=3.4e+02 Score=24.56 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
-+|+++++-+.+|..-+.-|-.++..+.+....=+.-|.||...|..+++.
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777776666666666666666777777777765443
No 455
>PRK04406 hypothetical protein; Provisional
Probab=35.12 E-value=2.1e+02 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016463 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (389)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (389)
|+.+..=+|+.+....+.-..-|.++..|...+-.
T Consensus 16 LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 16 LECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445556666554333
No 456
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.09 E-value=4.8e+02 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSK 315 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (389)
....+|.+|+++++.++.++.+++..+.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666555555554
No 457
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.03 E-value=5.7e+02 Score=27.08 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDL----QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ----VNEYAER 351 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 351 (389)
+...+.....+......++++...+.++... .++.++.|..+..-...-..+...|.+..+.+.+ |..-.+.
T Consensus 40 eA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~e 119 (514)
T TIGR03319 40 EAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKN 119 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 016463 352 LKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~ 370 (389)
|...+++++.++.....++
T Consensus 120 Lee~~~e~~~~~~~~~~~l 138 (514)
T TIGR03319 120 LDEKEEELEELIAEQREEL 138 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 458
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.02 E-value=2.4e+02 Score=29.10 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~ 323 (389)
+=.+.-|-+|+.|||..++.
T Consensus 157 ef~vnKlm~ki~Klen~t~~ 176 (552)
T KOG2129|consen 157 EFFVNKLMNKIRKLENKTLL 176 (552)
T ss_pred HHHHHHHHHHHHHhhhhhHH
Confidence 34555566777777665543
No 459
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.01 E-value=4.4e+02 Score=28.05 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=8.0
Q ss_pred CCCCCCcEEEEc
Q 016463 34 MTIDDESSVYVG 45 (389)
Q Consensus 34 ~~~~~~~~lfVg 45 (389)
....++.+|++|
T Consensus 18 i~f~~g~~vitG 29 (563)
T TIGR00634 18 VEFERGLTVLTG 29 (563)
T ss_pred EecCCCeEEEEC
Confidence 335667778777
No 460
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=34.79 E-value=1.3e+02 Score=27.42 Aligned_cols=60 Identities=27% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
||.|..++. |+..++...+.--=.+.|.||.|-+.- --+-+|.+|.++|.|-+.+..++|
T Consensus 114 elvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~i---sEDe~k~~e~~iQKlTd~yi~~iD 174 (187)
T COG0233 114 ELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEI---SEDEVKKAEEEIQKLTDEYIKKID 174 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 555555444333223444444443221 124456667777777777666655
No 461
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=34.75 E-value=2e+02 Score=21.74 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (389)
.++.....|.--+|+-+++..+|-.-..+-|....++ ++-.+.+..+-++|..++.|
T Consensus 9 ~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 9 ELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3444455555556666666666666666666665555 44444444444444444433
No 462
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.72 E-value=4.4e+02 Score=32.39 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ--------KQLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
.+.|..++..|-.+....+..+..||.-...+|....+++..-.++- .+-.+|+.|-..+++.+.-+..-=.
T Consensus 761 ~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 761 EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33444555555555555566666666555555544444443333332 2224566777777777777777667
Q ss_pred HHHHHHHHHhhh
Q 016463 358 EFQSIVDAAMTE 369 (389)
Q Consensus 358 ~~~~~~~~~~~~ 369 (389)
++|.+|+.++.+
T Consensus 841 ~~~~~i~~~~~~ 852 (1822)
T KOG4674|consen 841 NAQNLVDELESE 852 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 463
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.71 E-value=1.2e+02 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
...++.++..++.++++.+++..+|+.+.+.|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666665555555
No 464
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.66 E-value=90 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHhhhHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRS-KKLEEALIN---AKKLSSHR 331 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~e~~~~~---~~~~~~~~ 331 (389)
+--+.....+..||.+|+.++++... +.+||..+ +.++.++.+ ..-+++.+
T Consensus 52 ~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 52 NAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred chhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 34456677788899999998888887 77777777 444555555 44444444
No 465
>PRK00736 hypothetical protein; Provisional
Probab=34.65 E-value=2e+02 Score=21.64 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+.+|+.+..=.|+.+....+.-..-|+++..|.+. |+-..++|+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q---l~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK---LDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44555555555565555566555666666666654 3333445544
No 466
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=34.60 E-value=7.4e+02 Score=28.59 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016463 330 HRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~ 348 (389)
+||.-+-++.|-|++.+..
T Consensus 336 ~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 336 KRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 467
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=34.52 E-value=5.4e+02 Score=28.20 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHH----HH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLY---KCFIQVNEY----AE 350 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~ 350 (389)
.++.++..-+.+...|+.+...|..-...+..++.+.+.|+=+..+.++|-..=+.+|.+|. ..+..|.++ .+
T Consensus 38 ~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~ 117 (701)
T PF09763_consen 38 YLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALRNASLSSPD 117 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcc
Confidence 56777888888888888888889999999999999999998888888888776666555552 333333331 22
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 016463 351 RLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~ 368 (389)
-|..||.-|.+|-.++..
T Consensus 118 ~l~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 118 GLEKIEEAAEALYKALKA 135 (701)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 366777777766655443
No 468
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=34.18 E-value=26 Score=34.52 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016463 136 KGRDRDNNRHRDRYQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQ 203 (389)
Q Consensus 136 r~r~r~~~~~r~r~r~r~~~r~r~r~r~r~r~r~~~r~~~r~r~r~R~r~r~r~~~r~r~R~Rs~~~~ 203 (389)
+.++.... .+.+++++.+ +++++++.+++......+|++.++++ ++++++.+++.+ |++++...
T Consensus 256 ~~R~~~~~-~~~r~rd~~r-r~rd~~r~~~~~~r~~~r~~r~rsr~-~r~~~~~~~r~~-R~r~r~~~ 319 (319)
T KOG0796|consen 256 RSRSGSRE-ERHRSRDRDR-RSRDRSRERDRHSRREDRYDRHRSRS-SRSRRRSRSRHR-RDRDRRRS 319 (319)
T ss_pred cccccccc-hhhccccccc-cCCccccccccccccchhhhhccchh-hhhhhhcccccc-cccccccC
No 469
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.09 E-value=4.2e+02 Score=25.21 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK-SCEREFQSI 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (389)
.....+.++++.+.+.+++.+.++.+|+.+...+|..+..+.+.... -|.++.+.-..+.+--+.|+ ....+|=+.
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~---e~~~i~e~~~~~~~~~~~L~~~l~~ell~~ 179 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE---EVAEIREEGQELSSKREELKEKLDPELLSE 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34445555555555566666666666666665555555554443332 24444443333333333333 345677777
Q ss_pred HHHHhhhc
Q 016463 363 VDAAMTES 370 (389)
Q Consensus 363 ~~~~~~~~ 370 (389)
++.++..-
T Consensus 180 yeri~~~~ 187 (239)
T COG1579 180 YERIRKNK 187 (239)
T ss_pred HHHHHhcC
Confidence 77777763
No 470
>PRK04406 hypothetical protein; Provisional
Probab=33.56 E-value=2.2e+02 Score=21.88 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e 318 (389)
....|...++..+.-+++....+.+.|+.+..|+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 471
>PRK13676 hypothetical protein; Provisional
Probab=33.43 E-value=2.7e+02 Score=22.81 Aligned_cols=64 Identities=11% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
-+..+.+.+++...++.....-.-++..-.+.+.+|+..+. .+.....+..+|+.|+.|++.+.
T Consensus 38 a~~li~~F~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~-~n~~i~~y~~Ae~~l~~ll~~v~ 101 (114)
T PRK13676 38 AKKLFDEFRALQLEIQQKQMTGQEITEEEQQKAQELGQKIQ-QNELLSKLMEAEQRLSVYINDIN 101 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555545455555566666665543 34455566778888888876553
No 472
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.43 E-value=3.8e+02 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 016463 272 NSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (389)
+...+.+-+.........+.++..+++++..+++.++|++.+...+-+-|..++--++.=.+-|..+.----.++.+
T Consensus 188 ~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 188 HETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 473
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=33.41 E-value=2.4e+02 Score=22.19 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
++..++..+++.++++..+.+..+.++..+ -+....-+.+..-.||+|||.=-.+-.=+..|-+.
T Consensus 1 ~~~~l~~~~~~L~~~~~~l~~~i~~~~~~l---------~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~ 65 (83)
T PF07061_consen 1 QIESLEAEIQELKEQIEQLEKEISELEAEL---------IEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQ 65 (83)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 474
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.40 E-value=4.8e+02 Score=25.74 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
+.......-.+....-..+|+.|.+.|..|.......|..+..|-.++....+.--+--..--+|+..+.-.++....|.
T Consensus 196 kEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~ 275 (306)
T PF04849_consen 196 KEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ 275 (306)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 016463 354 SCEREFQ 360 (389)
Q Consensus 354 ~~~~~~~ 360 (389)
..-++||
T Consensus 276 aEL~elq 282 (306)
T PF04849_consen 276 AELQELQ 282 (306)
T ss_pred HHHHHHH
No 475
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.37 E-value=6.1e+02 Score=29.21 Aligned_cols=100 Identities=31% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCchhHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHH
Q 016463 267 NSSDDNSDQVK-ELDRSIQRREELKKEISHME----ERVNVKEQLVLDLQKRSKKLEEALINAKKLS-------SHRQKQ 334 (389)
Q Consensus 267 ~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-------~~~~~~ 334 (389)
+++...+.++. .+++.+.+-+.++.++..|+ --.++|++...+-++-.++.+.+...++.|. .+|+..
T Consensus 247 ~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~ 326 (1200)
T KOG0964|consen 247 SSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLA 326 (1200)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 335 LTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
|.-|++--.-+.+-.+.|...+-..++||+..
T Consensus 327 l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee 358 (1200)
T KOG0964|consen 327 LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEE 358 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
No 476
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.37 E-value=1.5e+02 Score=24.28 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
...+++.+..|++.++.-++....|+++...++..+..+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PRK14146 heat shock protein GrpE; Provisional
Probab=33.35 E-value=3.8e+02 Score=25.03 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----KQLTKLYKCFIQVNEYAERLKSC---EREFQSI 362 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 362 (389)
..+..++..++..++.+.+|+.+.+.+--...+.+|-...=. -.+.+|-+.||-|-|.-++.-.+ ..+++.|
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l 133 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELKPF 133 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhhHH
Q ss_pred HH
Q 016463 363 VD 364 (389)
Q Consensus 363 ~~ 364 (389)
+.
T Consensus 134 ~~ 135 (215)
T PRK14146 134 VE 135 (215)
T ss_pred HH
No 478
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.22 E-value=2.2e+02 Score=21.68 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (389)
+....|...|+..+.-+++....+.+.|+.+..|+.++.....
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.12 E-value=3.2e+02 Score=23.62 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 275 QVKELDRSI----QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 275 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
+++.++... +....|...+++++.+++.-+..+.+++.+....+....++..|.-.=|+.=-.|-..--.|.+-++
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 016463 351 RLKSCEREFQSI 362 (389)
Q Consensus 351 ~~~~~~~~~~~~ 362 (389)
+|.......-.+
T Consensus 102 kl~e~d~~ae~~ 113 (143)
T PF12718_consen 102 KLREADVKAEHF 113 (143)
T ss_pred HHHHHHHHhHHH
No 480
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.11 E-value=9.1 Score=40.21 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||.|++++++-.+|..++..+-.+..+.+-....- ...-+++|+|.-.-....|+-+||+..+....+.-.....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~en~~ 310 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSESENPD 310 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccccccccC
Q ss_pred cCCCCCCCCCC
Q 016463 118 RGRKSNSGRDQ 128 (389)
Q Consensus 118 ~~~~~~~g~~~ 128 (389)
-........+.
T Consensus 311 i~rrvr~~~Gi 321 (648)
T KOG2295|consen 311 ITRRVRPINGI 321 (648)
T ss_pred ccceeccCCch
No 481
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.10 E-value=1.9e+02 Score=26.08 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHME---ERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (389)
Q Consensus 284 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (389)
+-..+++.||+.|+ +.+|+-+...+-|.+|..-|+.+|..-++
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.05 E-value=4.8e+02 Score=27.94 Aligned_cols=91 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 277 KELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
+++|.=-...++|+.+|++++..+.+++....+|++....|-..-.+ ++.-|.-|-=++-|-++.--.+..-=
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk-------~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK-------RDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 016463 357 REFQSIVDAAMTESDIPD 374 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (389)
+.-.-+.+.||+.-.++|
T Consensus 404 kkAh~~~ddar~~pe~~d 421 (654)
T KOG4809|consen 404 KKAHNIEDDARMNPEFAD 421 (654)
T ss_pred HHHHHhhHhhhcChhhHH
No 483
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=32.95 E-value=3.1e+02 Score=24.52 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred CC--CCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 016463 266 SN--SSDDNS--DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (389)
Q Consensus 266 s~--s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 341 (389)
|+ |-.... ..+..++...+.-+.-......+-+-|++-++.+.+|+++.+.|++. +-+.++....
T Consensus 75 Se~~S~~K~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~---------- 143 (163)
T PF03233_consen 75 SEGLSKSKSPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDN-IVTEKLIEEL---------- 143 (163)
T ss_pred ccccccCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016463 342 FIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
|++.-++|+.....|+.+|
T Consensus 144 ---IKd~de~L~~I~d~iK~Ii 162 (163)
T PF03233_consen 144 ---IKDFDERLKEIRDKIKKII 162 (163)
T ss_pred ---HHHHHHHHHHHHHHHHhhc
No 484
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.92 E-value=95 Score=23.16 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcC
Q 016463 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN 89 (389)
Q Consensus 54 ~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~ 89 (389)
.+|+.+|+..|.|.-+-|..-......-.|=|.|++
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~eD 44 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVMED 44 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEeC
No 485
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.81 E-value=4.6e+02 Score=27.82 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
..+.+.+...+...+....++.++..+.+.|+++|.++++ .+-.+|.--=-+|-..|++|-.-..|++.|
T Consensus 444 ~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~------NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 444 RALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR------NYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=32.69 E-value=4.4e+02 Score=25.06 Aligned_cols=89 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEE--RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
..+++..+ ..+++.+-+..+.. ....+.....+|++ +..+-..+......-..--..|+.++..|.+........+
T Consensus 164 ~~~lk~~~-~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k-~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~ 241 (296)
T PF13949_consen 164 LEQLKEKL-QNDDISKLLSELNKNGSADFEALFEEELKK-FDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQK 241 (296)
T ss_dssp HHHHHH------HHHHHHHHHHHSSS--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHH
T ss_pred HHHHHHHH-hhccHHHHHHHhhccCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q ss_pred HHHHHHHHHHHHH
Q 016463 354 SCEREFQSIVDAA 366 (389)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (389)
..+.-|+.|..+.
T Consensus 242 ~r~~~~~~l~~a~ 254 (296)
T PF13949_consen 242 ERESALQRLEAAY 254 (296)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 487
>PLN02678 seryl-tRNA synthetase
Probab=32.64 E-value=4e+02 Score=27.78 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.+|-.+.++..+....+.+|+.+..++..+....++-.......+.++.+-=-+++...+.|+..+.+|..++-.+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 488
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=32.47 E-value=98 Score=27.02 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----KQLTKLYKCFIQVNEYAERLKSC---EREFQ 360 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 360 (389)
+..++..+++.++..+..+.+|+++...+.....+..+-...-. ..+.++.+.||.|-|.-+++-.. ..+++
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~ 88 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEE 88 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHH
Q ss_pred HHHHHHhh
Q 016463 361 SIVDAAMT 368 (389)
Q Consensus 361 ~~~~~~~~ 368 (389)
.++....+
T Consensus 89 ~~~~g~~~ 96 (165)
T PF01025_consen 89 SLLEGLEM 96 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 489
>PRK04325 hypothetical protein; Provisional
Probab=32.42 E-value=2.3e+02 Score=21.69 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (389)
.+.-+.-+.+|+.+..=.|+.+....+.-..-|+++..|. -+|+-..++|+..+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~---~ql~~L~~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ---AQLRLLYQQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
No 490
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.20 E-value=4.1e+02 Score=24.53 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------------------------
Q 016463 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-------------------------- 332 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-------------------------- 332 (389)
+++.-.|.+-+..-+-.|++.+.+-++.+..+.-..+.+|..+..+......+.
T Consensus 19 ~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~ 98 (219)
T TIGR02977 19 LDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQ 98 (219)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.++..|..++.+++...+.|+.--.+|+.-|..+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PLN02372 violaxanthin de-epoxidase
Probab=32.20 E-value=5.8e+02 Score=26.32 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
|.+++.|+.|-.. +-+|+++++++-..+..-+...-+.| ..+..+..-.|+.+.-|..---...+.-+.|+
T Consensus 368 ~~~e~~e~~i~~e------~~~~~~e~~~~v~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~ 438 (455)
T PLN02372 368 KDVEEGEKTIVKE------ARQIEEELEKEVEKLGKEEESLFKRV---ALEEGLKELEQDEENFLKELSKEEKELLEKLK 438 (455)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 016463 354 SCEREFQSIVDAAM 367 (389)
Q Consensus 354 ~~~~~~~~~~~~~~ 367 (389)
..-.|++.||..|+
T Consensus 439 ~~~~~vek~f~~~~ 452 (455)
T PLN02372 439 MEASEVEKLFGRAL 452 (455)
T ss_pred HHHHHHHHHhhhcc
No 492
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.09 E-value=6e+02 Score=26.39 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 275 QVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
+.+.-++.-|++...+++++++++.+.+.+....-+..+.-+... .--|++.++|-...+-+.++...|.+
T Consensus 48 e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---------~~~q~e~~~~~~~~~~N~e~dke~~~ 118 (438)
T COG4487 48 EKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---------LALQDEIAKLEALELLNLEKDKELEL 118 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhHHhhHHHHH
Q ss_pred HHHHHHHH
Q 016463 355 CEREFQSI 362 (389)
Q Consensus 355 ~~~~~~~~ 362 (389)
.+.+|..+
T Consensus 119 le~~L~~~ 126 (438)
T COG4487 119 LEKELDEL 126 (438)
T ss_pred HHHHHHHH
No 493
>PRK10869 recombination and repair protein; Provisional
Probab=32.01 E-value=5.6e+02 Score=27.37 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 016463 291 KEISHMEERVNVKEQ-------LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK----SCEREF 359 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~-------~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 359 (389)
.++..+++++..-.. .+.++....++++.++..........+..-.++.++..++....+.|- .+=..|
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l 375 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKEL 375 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhcCCCC
Q 016463 360 QSIVDAAMTESDIPD 374 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~ 374 (389)
...|...|.++.|+.
T Consensus 376 ~~~v~~~L~~L~m~~ 390 (553)
T PRK10869 376 AQLITESMHELSMPH 390 (553)
T ss_pred HHHHHHHHHHcCCCC
No 494
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=31.96 E-value=4.2e+02 Score=24.55 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
|||.|+-.|.+-+.++.-=-..+-.|-..+-.+.-........+..|+. .++..+--|..|++|||...+-|
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~---~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD---SLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHhhHhHHHhHHHHHHHhCHH
No 495
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=31.69 E-value=4.1e+02 Score=24.43 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQK----QLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
+..+.-.+.+..++ +....|...+...|+-....+.||.-..++ ....|..+ +++.+++...++.=+
T Consensus 91 ~~~e~d~k~i~~~~------K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~---~~~v~~~~~ele~~~ 161 (219)
T PF08397_consen 91 KKLEEDKKYITQLE------KDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEA---LQDVTERQSELEEFE 161 (219)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhh
Q 016463 360 QSIVDAAMTE 369 (389)
Q Consensus 360 ~~~~~~~~~~ 369 (389)
+.-+..||.|
T Consensus 162 ~~~~r~al~E 171 (219)
T PF08397_consen 162 KQSLREALLE 171 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 496
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=31.60 E-value=2.9e+02 Score=28.59 Aligned_cols=74 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEE--RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (389)
Q Consensus 285 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (389)
+...+.+|+..++. +..++=.++.|.|.+....++.+.+.++|.-.-+.+|..|.+..-+=.+|+.-|+..+.+
T Consensus 144 l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 144 LLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.45 E-value=7.5e+02 Score=27.31 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----H
Q 016463 273 SDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE----Y 348 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 348 (389)
+...+.+.+..|+ +.+...+..|...++.+.+.+.+||..++.|--...+..|.++.=...|.+|+.-.-.|+- .
T Consensus 577 ~~e~e~~~k~kq~-k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~ 655 (786)
T PF05483_consen 577 SIECEILKKEKQM-KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEE 655 (786)
T ss_pred HHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 016463 349 AERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
++++...=..=..+..-+|.||+
T Consensus 656 ~~~~~keie~K~~~e~~L~~Eve 678 (786)
T PF05483_consen 656 TDKYQKEIESKSISEEELLGEVE 678 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
No 498
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.39 E-value=2.3e+02 Score=22.06 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 016463 314 SKKLEEALINAKKLSSHRQ---KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDIPD 374 (389)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
.+.++.+..-..+|.+--- ..|....+.-.-++.|...|..+|++++.|++..-.++.+.+
T Consensus 13 Eea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~~~~~~~~~~~ 76 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEP 76 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
No 499
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=31.37 E-value=2.9e+02 Score=25.43 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDL----QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAER 351 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (389)
...++...+..+++......|++-.+.++..-..+ .+-+..+..+...+-+....|.+.|.+..+++-.-++..+.
T Consensus 21 ~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~ 100 (204)
T PF10368_consen 21 YDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKK 100 (204)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH---------HHHHHHHHHHHH
Q 016463 352 LKS---------CEREFQSIVDAA 366 (389)
Q Consensus 352 ~~~---------~~~~~~~~~~~~ 366 (389)
++. .-.+++.|+.+.
T Consensus 101 ~~~~i~ki~d~~~k~qa~~l~~~~ 124 (204)
T PF10368_consen 101 AKKYIDKIEDEKLKKQAKELNEAM 124 (204)
T ss_dssp ----------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHH
No 500
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.21 E-value=5e+02 Score=25.23 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHH
Q 016463 275 QVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE----YAE 350 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 350 (389)
.++....+++.-=+|.+--.+|+.-+++-.+.+..+-.+.--.-..+++.--.-..|...|..++|-|-.||. +-+
T Consensus 89 ~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 89 HKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 016463 351 RLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~ 368 (389)
....||.|||-|.+.-+.
T Consensus 169 EyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 169 EYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHH
Done!