Query 016463
Match_columns 389
No_of_seqs 332 out of 2313
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 8.2E-22 2.8E-26 200.2 20.7 85 36-120 99-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 1.6E-19 5.4E-24 146.5 11.4 81 37-117 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.9E-19 3E-23 153.0 13.0 88 33-120 33-121 (156)
4 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.7E-23 146.9 10.1 89 33-121 16-105 (126)
5 3s8s_A Histone-lysine N-methyl 99.8 2.4E-18 8.2E-23 142.3 11.7 81 37-117 4-85 (110)
6 2dnz_A Probable RNA-binding pr 99.8 3.9E-18 1.3E-22 136.1 11.9 85 37-121 3-88 (95)
7 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-18 2.3E-22 144.4 14.0 87 35-121 38-125 (139)
8 2fy1_A RNA-binding motif prote 99.8 5E-18 1.7E-22 141.4 12.3 86 35-120 3-88 (116)
9 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.8E-18 1.6E-22 133.2 11.2 83 36-118 3-86 (87)
10 2dnm_A SRP46 splicing factor; 99.8 3.2E-18 1.1E-22 138.8 10.5 88 33-120 7-95 (103)
11 2cq0_A Eukaryotic translation 99.8 5.2E-18 1.8E-22 137.6 11.7 87 35-121 11-98 (103)
12 1whw_A Hypothetical protein ri 99.8 7.6E-18 2.6E-22 135.5 12.5 86 36-121 5-91 (99)
13 1x5u_A Splicing factor 3B subu 99.8 4.5E-18 1.5E-22 138.4 11.2 88 34-121 10-98 (105)
14 1x5t_A Splicing factor 3B subu 99.8 4.5E-18 1.6E-22 136.0 10.6 84 37-120 3-88 (96)
15 2dgo_A Cytotoxic granule-assoc 99.7 2E-17 6.7E-22 136.9 14.4 87 35-121 11-98 (115)
16 3md1_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 130.2 11.6 81 39-119 1-82 (83)
17 2dgs_A DAZ-associated protein 99.7 9.4E-18 3.2E-22 135.1 11.8 86 35-121 6-92 (99)
18 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.6E-17 5.6E-22 134.7 13.2 85 35-120 11-95 (103)
19 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4E-22 134.8 12.1 85 36-120 14-98 (100)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6E-18 2E-22 136.9 10.3 86 36-121 9-95 (102)
21 2d9p_A Polyadenylate-binding p 99.7 8.7E-18 3E-22 136.3 11.2 86 34-120 10-95 (103)
22 1x5s_A Cold-inducible RNA-bind 99.7 6.9E-18 2.4E-22 136.5 10.6 85 36-120 9-94 (102)
23 2cpf_A RNA binding motif prote 99.7 9.8E-18 3.3E-22 134.6 11.4 85 37-121 3-91 (98)
24 2dgx_A KIAA0430 protein; RRM d 99.7 1E-17 3.5E-22 134.6 11.5 84 35-120 5-92 (96)
25 2cpz_A CUG triplet repeat RNA- 99.7 1E-17 3.5E-22 138.7 11.7 86 35-120 21-107 (115)
26 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-17 3.8E-22 136.0 11.5 86 34-121 10-97 (104)
27 2cq3_A RNA-binding protein 9; 99.7 2.5E-17 8.5E-22 133.6 13.5 87 34-121 10-96 (103)
28 1p27_B RNA-binding protein 8A; 99.7 9E-18 3.1E-22 136.8 10.8 86 34-119 18-104 (106)
29 2lxi_A RNA-binding protein 10; 99.7 2.1E-18 7.3E-23 137.5 6.9 81 40-120 2-85 (91)
30 4f25_A Polyadenylate-binding p 99.7 8.6E-18 3E-22 139.6 10.8 80 39-119 5-84 (115)
31 1x4h_A RNA-binding protein 28; 99.7 1.3E-17 4.6E-22 136.8 11.7 87 35-121 11-104 (111)
32 2dng_A Eukaryotic translation 99.7 1.9E-17 6.6E-22 134.4 12.5 85 34-120 10-95 (103)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.5E-22 130.7 10.3 81 36-116 4-85 (85)
34 2dnh_A Bruno-like 5, RNA bindi 99.7 1.7E-17 5.7E-22 135.0 11.9 86 36-121 12-100 (105)
35 2dhg_A TRNA selenocysteine ass 99.7 1.1E-17 3.7E-22 135.9 10.7 85 36-120 6-92 (104)
36 1x4c_A Splicing factor, argini 99.7 3.1E-17 1.1E-21 134.6 13.2 77 37-119 13-94 (108)
37 2cqc_A Arginine/serine-rich sp 99.7 1.4E-17 4.8E-22 132.7 10.8 83 35-117 11-94 (95)
38 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.7E-22 133.5 10.8 83 38-120 1-84 (96)
39 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-17 4.7E-22 136.7 11.0 86 35-120 22-108 (110)
40 2ywk_A Putative RNA-binding pr 99.7 1.5E-17 5.1E-22 132.7 10.7 83 35-117 12-94 (95)
41 3ulh_A THO complex subunit 4; 99.7 2.3E-17 8E-22 134.5 11.8 83 34-116 24-106 (107)
42 2cph_A RNA binding motif prote 99.7 1.7E-17 5.9E-22 135.2 11.0 86 35-120 11-99 (107)
43 2div_A TRNA selenocysteine ass 99.7 1.4E-17 4.6E-22 134.1 10.2 86 35-120 5-96 (99)
44 2e5h_A Zinc finger CCHC-type a 99.7 1.9E-17 6.5E-22 131.8 10.9 81 36-116 13-94 (94)
45 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.1E-22 137.0 11.7 83 34-116 35-118 (118)
46 2cqd_A RNA-binding region cont 99.7 4.6E-17 1.6E-21 134.9 13.4 85 35-120 13-98 (116)
47 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5E-22 135.5 10.1 86 35-120 9-98 (106)
48 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.5E-22 133.9 10.2 84 33-116 7-99 (99)
49 2lkz_A RNA-binding protein 5; 99.7 5.6E-18 1.9E-22 136.6 7.5 80 38-117 8-94 (95)
50 1x4a_A Splicing factor, argini 99.7 3.3E-17 1.1E-21 134.3 12.2 85 34-120 17-101 (109)
51 4a8x_A RNA-binding protein wit 99.7 1.9E-17 6.4E-22 130.0 10.2 82 38-119 3-86 (88)
52 2cpe_A RNA-binding protein EWS 99.7 2.2E-17 7.4E-22 136.2 10.9 86 35-120 11-105 (113)
53 2do0_A HnRNP M, heterogeneous 99.7 9.2E-17 3.1E-21 132.5 14.3 84 36-119 12-95 (114)
54 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3E-17 1E-21 144.8 12.0 88 33-120 66-154 (165)
55 2dgv_A HnRNP M, heterogeneous 99.7 3E-17 1E-21 130.1 10.6 84 36-120 5-88 (92)
56 2cpi_A CCR4-NOT transcription 99.7 2.1E-17 7.3E-22 136.3 10.0 87 34-120 10-103 (111)
57 3s7r_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 127.0 11.9 81 34-115 6-87 (87)
58 3p5t_L Cleavage and polyadenyl 99.7 5.7E-18 2E-22 134.3 6.0 81 40-120 2-85 (90)
59 2dgu_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 130.8 12.9 79 36-121 8-86 (103)
60 2jrs_A RNA-binding protein 39; 99.7 2.3E-17 7.9E-22 135.7 9.7 85 34-118 21-106 (108)
61 3n9u_C Cleavage and polyadenyl 99.7 3.1E-17 1.1E-21 143.9 11.0 81 38-118 54-137 (156)
62 3ucg_A Polyadenylate-binding p 99.7 5.7E-17 1.9E-21 127.6 11.4 79 39-118 6-85 (89)
63 2err_A Ataxin-2-binding protei 99.7 2.6E-17 8.9E-22 135.4 9.8 86 32-118 22-107 (109)
64 2dh8_A DAZ-associated protein 99.7 3.3E-17 1.1E-21 133.3 10.2 85 35-120 12-97 (105)
65 3ns6_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 136.8 5.8 81 38-118 5-93 (100)
66 3q2s_C Cleavage and polyadenyl 99.7 5E-18 1.7E-22 158.1 5.4 81 38-118 67-150 (229)
67 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.3E-22 134.7 8.7 80 37-117 9-88 (103)
68 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.5E-21 129.2 13.0 86 34-121 10-96 (103)
69 2rs2_A Musashi-1, RNA-binding 99.7 5.9E-17 2E-21 133.4 10.7 84 36-120 22-106 (109)
70 1sjq_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 134.0 9.4 81 36-121 13-95 (105)
71 2la4_A Nuclear and cytoplasmic 99.7 4.2E-17 1.4E-21 131.8 9.5 78 35-117 23-100 (101)
72 1x4b_A Heterogeneous nuclear r 99.7 6.9E-17 2.4E-21 133.9 11.0 83 38-121 26-109 (116)
73 2dgw_A Probable RNA-binding pr 99.7 1.2E-16 4.1E-21 126.6 11.9 82 36-119 7-88 (91)
74 2dnq_A RNA-binding protein 4B; 99.7 9.1E-17 3.1E-21 127.1 11.0 79 36-121 5-83 (90)
75 2kxn_B Transformer-2 protein h 99.7 3.2E-17 1.1E-21 139.2 8.9 87 33-119 40-127 (129)
76 2kt5_A RNA and export factor-b 99.7 1.9E-16 6.6E-21 132.8 13.6 86 35-120 31-116 (124)
77 2cqp_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 131.1 8.7 83 36-118 12-95 (98)
78 2fc9_A NCL protein; structure 99.7 1.1E-16 3.7E-21 129.3 11.0 82 36-120 12-93 (101)
79 2cq4_A RNA binding motif prote 99.7 3.9E-17 1.3E-21 135.0 8.5 80 39-119 25-105 (114)
80 3r27_A HnRNP L, heterogeneous 99.7 9E-17 3.1E-21 130.6 10.3 80 34-118 16-97 (100)
81 2nlw_A Eukaryotic translation 99.7 5E-17 1.7E-21 132.7 8.7 86 33-119 9-101 (105)
82 1wez_A HnRNP H', FTP-3, hetero 99.7 7.8E-17 2.7E-21 131.3 9.7 83 36-120 12-94 (102)
83 2dgt_A RNA-binding protein 30; 99.7 2.1E-16 7.2E-21 125.5 11.9 80 35-121 6-85 (92)
84 2ek1_A RNA-binding protein 12; 99.7 3.5E-17 1.2E-21 130.5 7.4 81 37-117 13-94 (95)
85 2cq1_A PTB-like protein L; RRM 99.7 1.9E-16 6.7E-21 128.9 11.8 82 35-121 11-94 (101)
86 1x4d_A Matrin 3; structural ge 99.7 7.2E-17 2.5E-21 131.8 9.0 80 36-120 12-94 (102)
87 3beg_B Splicing factor, argini 99.7 4.4E-17 1.5E-21 135.4 7.8 74 38-117 15-93 (115)
88 2jwn_A Embryonic polyadenylate 99.7 1.6E-16 5.5E-21 133.1 11.3 80 39-119 36-116 (124)
89 1x4e_A RNA binding motif, sing 99.7 2.3E-17 7.8E-22 129.0 5.7 80 36-115 2-82 (85)
90 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-16 3.9E-21 126.4 9.6 75 37-116 5-79 (89)
91 2cpd_A Apobec-1 stimulating pr 99.7 3.2E-16 1.1E-20 126.2 12.4 79 35-120 11-91 (99)
92 1x4g_A Nucleolysin TIAR; struc 99.7 2E-16 6.8E-21 129.7 11.4 81 36-121 22-102 (109)
93 2cpy_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 132.8 9.7 83 36-119 12-95 (114)
94 1why_A Hypothetical protein ri 99.7 1.3E-16 4.4E-21 128.0 9.8 80 36-120 14-95 (97)
95 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.9E-21 133.5 10.4 85 32-121 24-110 (119)
96 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-16 5.9E-21 138.4 11.4 85 36-120 67-152 (158)
97 2fc8_A NCL protein; structure 99.7 2E-16 6.9E-21 127.8 11.0 83 35-120 11-94 (102)
98 2dis_A Unnamed protein product 99.7 2.2E-16 7.5E-21 129.1 11.3 85 36-120 5-94 (109)
99 2xnq_A Nuclear polyadenylated 99.7 2.3E-16 7.8E-21 127.1 11.1 78 34-118 17-95 (97)
100 2hvz_A Splicing factor, argini 99.7 8E-17 2.7E-21 130.1 8.5 77 40-120 1-77 (101)
101 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.2E-17 1.1E-21 132.6 6.1 83 34-118 14-98 (100)
102 1p1t_A Cleavage stimulation fa 99.7 7.4E-17 2.5E-21 130.8 8.1 83 38-120 7-90 (104)
103 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 133.6 9.1 82 36-118 14-98 (118)
104 2m2b_A RNA-binding protein 10; 99.7 4.5E-17 1.6E-21 138.3 6.8 85 35-120 19-110 (131)
105 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-16 3.8E-21 132.7 8.9 80 36-118 25-105 (111)
106 2dnp_A RNA-binding protein 14; 99.7 3.1E-16 1.1E-20 124.0 10.9 78 36-120 6-83 (90)
107 1x5o_A RNA binding motif, sing 99.7 2.4E-16 8.1E-21 130.1 10.6 83 36-118 22-112 (114)
108 1wg5_A Heterogeneous nuclear r 99.7 2.4E-16 8.1E-21 128.5 10.5 83 36-119 12-95 (104)
109 2kvi_A Nuclear polyadenylated 99.7 8.7E-17 3E-21 129.0 7.7 78 36-120 7-85 (96)
110 2mss_A Protein (musashi1); RNA 99.7 6.1E-17 2.1E-21 123.5 6.5 74 41-115 1-75 (75)
111 2a3j_A U1 small nuclear ribonu 99.7 1.8E-16 6.2E-21 134.5 9.8 83 35-119 25-111 (127)
112 2cpj_A Non-POU domain-containi 99.7 2.5E-16 8.6E-21 126.8 10.0 81 35-120 11-91 (99)
113 2jvo_A Nucleolar protein 3; nu 99.7 2.1E-16 7.3E-21 129.9 9.6 79 35-120 27-105 (108)
114 2cpx_A Hypothetical protein FL 99.7 2.2E-16 7.7E-21 130.3 9.7 83 36-121 22-108 (115)
115 2lea_A Serine/arginine-rich sp 99.7 6.6E-17 2.3E-21 138.3 6.6 87 34-120 42-129 (135)
116 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.2E-16 1.1E-20 133.5 10.7 81 35-115 59-140 (140)
117 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-16 6.4E-21 126.0 8.7 79 36-120 5-85 (93)
118 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-16 1.3E-20 121.9 10.1 76 36-116 9-85 (85)
119 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.9E-17 3E-21 123.0 6.4 75 40-115 1-76 (77)
120 1wex_A Hypothetical protein (r 99.7 2.7E-16 9.2E-21 128.8 9.6 81 35-120 11-93 (104)
121 3lqv_A PRE-mRNA branch site pr 99.7 3.2E-16 1.1E-20 129.5 10.1 82 36-119 5-86 (115)
122 1wf1_A RNA-binding protein RAL 99.7 3.6E-16 1.2E-20 128.4 10.3 78 36-120 24-102 (110)
123 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.6E-21 127.6 7.3 83 35-119 4-90 (97)
124 2e5j_A Methenyltetrahydrofolat 99.7 2.4E-16 8E-21 126.6 8.6 80 36-119 16-95 (97)
125 2hgl_A HNRPF protein, heteroge 99.7 1.8E-16 6.1E-21 136.1 8.1 82 36-118 41-125 (136)
126 2ki2_A SS-DNA binding protein 99.6 5.5E-17 1.9E-21 128.2 4.4 80 40-120 2-82 (90)
127 2krb_A Eukaryotic translation 99.6 1.1E-16 3.9E-21 124.2 6.1 73 39-112 1-80 (81)
128 2dnn_A RNA-binding protein 12; 99.6 2E-16 6.7E-21 130.7 7.9 78 39-118 16-93 (109)
129 1wel_A RNA-binding protein 12; 99.6 8.8E-17 3E-21 135.1 5.8 82 36-118 22-104 (124)
130 2lcw_A RNA-binding protein FUS 99.5 1.2E-17 4.1E-22 138.6 0.0 86 36-121 4-98 (116)
131 2lmi_A GRSF-1, G-rich sequence 99.6 1E-16 3.5E-21 131.3 4.8 83 35-118 7-92 (107)
132 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-16 1.2E-20 125.1 7.7 81 36-120 13-93 (96)
133 1x4f_A Matrin 3; structural ge 99.6 3.1E-16 1.1E-20 130.1 7.2 81 35-120 21-104 (112)
134 1x5p_A Negative elongation fac 99.6 2.6E-15 8.8E-20 120.5 12.4 79 35-120 11-89 (97)
135 2hgn_A Heterogeneous nuclear r 99.6 9.1E-17 3.1E-21 138.4 4.0 84 35-120 42-125 (139)
136 1fj7_A Nucleolin RBD1, protein 99.6 8.9E-17 3E-21 129.8 3.5 83 36-120 14-97 (101)
137 2i2y_A Fusion protein consists 99.6 6.5E-16 2.2E-20 133.8 8.9 82 34-119 68-149 (150)
138 2xs2_A Deleted in azoospermia- 99.6 6.6E-16 2.3E-20 124.9 8.3 82 37-120 7-88 (102)
139 2f3j_A RNA and export factor b 99.6 8.3E-16 2.8E-20 137.6 9.7 85 35-119 84-168 (177)
140 1whx_A Hypothetical protein ri 99.6 6.6E-16 2.2E-20 127.5 8.1 76 38-118 9-84 (111)
141 1iqt_A AUF1, heterogeneous nuc 99.6 2.8E-16 9.5E-21 119.7 5.3 74 41-115 1-75 (75)
142 4f02_A Polyadenylate-binding p 99.6 1.8E-15 6.3E-20 138.4 11.6 83 36-118 12-95 (213)
143 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.5E-20 126.1 9.9 83 33-120 19-108 (114)
144 2dha_A FLJ20171 protein; RRM d 99.6 6.2E-16 2.1E-20 130.5 7.0 81 36-117 20-104 (123)
145 3egn_A RNA-binding protein 40; 99.6 1.1E-15 3.9E-20 131.3 8.6 85 36-120 42-132 (143)
146 2e5g_A U6 snRNA-specific termi 99.6 5.1E-15 1.7E-19 118.1 11.4 78 37-119 6-83 (94)
147 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.9E-20 129.4 7.8 82 35-118 38-121 (126)
148 1sjr_A Polypyrimidine tract-bi 99.6 4.1E-15 1.4E-19 131.1 11.1 80 37-119 44-125 (164)
149 1wg1_A KIAA1579 protein, homol 99.6 2.6E-15 8.8E-20 118.4 8.5 75 38-118 4-78 (88)
150 3d2w_A TAR DNA-binding protein 99.6 3.9E-15 1.3E-19 118.1 9.4 78 34-119 6-85 (89)
151 3md3_A Nuclear and cytoplasmic 99.6 7.9E-15 2.7E-19 127.0 11.9 82 35-116 83-165 (166)
152 1b7f_A Protein (SXL-lethal pro 99.6 5.2E-15 1.8E-19 128.7 10.2 82 38-119 2-84 (168)
153 3zzy_A Polypyrimidine tract-bi 99.6 8.2E-15 2.8E-19 124.5 11.1 80 36-119 25-107 (130)
154 1fxl_A Paraneoplastic encephal 99.6 9.2E-15 3.2E-19 126.7 11.6 81 39-119 2-83 (167)
155 2e44_A Insulin-like growth fac 99.6 3.4E-15 1.2E-19 119.2 8.1 79 37-118 13-92 (96)
156 3md3_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 126.1 10.9 80 40-119 1-80 (166)
157 1wf0_A TDP-43, TAR DNA-binding 99.6 3.7E-15 1.3E-19 117.3 7.1 78 37-120 3-80 (88)
158 2qfj_A FBP-interacting repress 99.6 1.2E-14 4.1E-19 131.7 11.5 85 37-121 123-208 (216)
159 4f02_A Polyadenylate-binding p 99.6 8.6E-15 2.9E-19 133.9 10.4 79 39-118 103-181 (213)
160 2j8a_A Histone-lysine N-methyl 99.6 7.3E-15 2.5E-19 123.8 9.0 77 40-116 3-94 (136)
161 2yh0_A Splicing factor U2AF 65 99.6 1.7E-14 5.8E-19 129.0 11.9 85 36-120 111-196 (198)
162 1l3k_A Heterogeneous nuclear r 99.6 1.5E-14 5E-19 129.2 11.0 84 35-119 9-93 (196)
163 2e5i_A Heterogeneous nuclear r 99.6 1.6E-14 5.5E-19 121.9 10.6 75 40-119 26-103 (124)
164 2g4b_A Splicing factor U2AF 65 99.6 1.8E-14 6.3E-19 125.9 11.3 79 37-115 92-171 (172)
165 1l3k_A Heterogeneous nuclear r 99.6 1.7E-14 5.9E-19 128.8 11.3 85 36-121 101-186 (196)
166 2hzc_A Splicing factor U2AF 65 99.5 1.1E-14 3.9E-19 113.8 8.7 72 37-114 4-86 (87)
167 3u1l_A PRE-mRNA-splicing facto 99.5 6.5E-15 2.2E-19 137.7 8.4 113 2-120 80-231 (240)
168 3tyt_A Heterogeneous nuclear r 99.5 1.3E-14 4.6E-19 132.5 10.2 78 37-118 2-80 (205)
169 2bz2_A Negative elongation fac 99.5 1.5E-14 5.1E-19 121.4 8.7 78 36-120 36-113 (121)
170 2diu_A KIAA0430 protein; struc 99.5 1.5E-14 5.2E-19 115.4 8.2 75 37-120 6-86 (96)
171 3nmr_A Cugbp ELAV-like family 99.5 2.8E-14 9.5E-19 124.8 10.2 80 36-115 92-174 (175)
172 2cjk_A Nuclear polyadenylated 99.5 1.1E-14 3.8E-19 126.7 7.4 80 38-118 86-166 (167)
173 2pe8_A Splicing factor 45; RRM 99.5 7.5E-14 2.6E-18 114.3 11.2 81 37-117 6-93 (105)
174 2voo_A Lupus LA protein; RNA-b 99.5 5.3E-14 1.8E-18 127.5 10.9 78 39-117 109-186 (193)
175 1b7f_A Protein (SXL-lethal pro 99.5 5.8E-14 2E-18 122.1 10.7 80 36-115 86-168 (168)
176 2dnl_A Cytoplasmic polyadenyla 99.5 3.4E-14 1.2E-18 117.5 8.0 77 36-115 5-85 (114)
177 2qfj_A FBP-interacting repress 99.5 5.1E-14 1.7E-18 127.6 9.5 80 39-118 28-108 (216)
178 3nmr_A Cugbp ELAV-like family 99.5 6.9E-14 2.3E-18 122.2 9.9 82 38-119 2-89 (175)
179 1fxl_A Paraneoplastic encephal 99.5 8.9E-14 3E-18 120.4 9.9 79 37-115 86-167 (167)
180 1fje_B Nucleolin RBD12, protei 99.5 8.4E-14 2.9E-18 122.3 9.2 78 37-118 97-174 (175)
181 3pgw_A U1-A; protein-RNA compl 99.5 1.4E-13 4.9E-18 130.4 11.3 83 35-119 5-91 (282)
182 3pgw_A U1-A; protein-RNA compl 99.5 2.5E-13 8.7E-18 128.7 12.4 77 36-116 204-281 (282)
183 2adc_A Polypyrimidine tract-bi 99.5 8.8E-14 3E-18 128.6 8.7 79 36-118 31-110 (229)
184 2cjk_A Nuclear polyadenylated 99.5 9.8E-14 3.4E-18 120.7 8.2 79 38-118 2-81 (167)
185 2ghp_A U4/U6 snRNA-associated 99.5 1.5E-13 5.1E-18 130.9 10.0 83 35-118 206-291 (292)
186 3smz_A Protein raver-1, ribonu 99.4 3.3E-13 1.1E-17 128.1 11.5 85 36-120 181-266 (284)
187 2dit_A HIV TAT specific factor 99.4 6.6E-13 2.3E-17 109.4 11.6 82 36-120 12-104 (112)
188 1jmt_A Splicing factor U2AF 35 99.4 9.6E-14 3.3E-18 113.4 4.2 73 43-115 19-103 (104)
189 3smz_A Protein raver-1, ribonu 99.4 1E-12 3.4E-17 124.7 11.9 83 37-119 93-176 (284)
190 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.1E-18 122.5 6.6 77 39-119 3-80 (198)
191 3sde_A Paraspeckle component 1 99.4 5E-13 1.7E-17 126.0 9.4 77 36-117 19-95 (261)
192 1qm9_A Polypyrimidine tract-bi 99.4 3.3E-13 1.1E-17 121.2 7.6 79 36-118 117-197 (198)
193 1fje_B Nucleolin RBD12, protei 99.4 1.1E-13 3.8E-18 121.6 3.9 84 35-119 9-92 (175)
194 2adc_A Polypyrimidine tract-bi 99.4 6.9E-13 2.4E-17 122.5 9.5 79 36-118 148-228 (229)
195 3tyt_A Heterogeneous nuclear r 99.4 4.9E-13 1.7E-17 122.1 7.9 79 36-115 120-204 (205)
196 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.2E-17 107.1 8.4 80 38-117 4-96 (105)
197 2ghp_A U4/U6 snRNA-associated 99.4 9.6E-13 3.3E-17 125.3 9.0 84 37-120 115-199 (292)
198 3sde_A Paraspeckle component 1 99.4 1.9E-12 6.4E-17 122.1 10.9 82 37-118 94-179 (261)
199 2g4b_A Splicing factor U2AF 65 99.3 2.4E-12 8.1E-17 112.4 9.6 75 38-118 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.3 2.6E-12 8.8E-17 107.4 8.9 80 38-117 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.3 2.6E-12 8.9E-17 114.7 9.3 75 38-118 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 9.8E-12 3.4E-16 100.8 9.1 66 49-120 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.3 9.3E-12 3.2E-16 122.2 9.3 79 33-116 12-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 5.9E-11 2E-15 98.5 9.6 78 37-117 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 3.8E-10 1.3E-14 94.4 8.8 79 33-116 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 4.5E-10 1.5E-14 88.8 7.8 74 36-117 4-85 (91)
207 3dxb_A Thioredoxin N-terminall 98.8 2.4E-08 8.2E-13 91.4 10.4 82 36-117 121-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 7.6E-09 2.6E-13 82.2 5.8 74 35-116 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.1 1.1E-05 3.7E-10 65.5 8.9 73 37-114 19-96 (117)
210 1wey_A Calcipressin 1; structu 97.4 0.00031 1.1E-08 56.5 7.0 77 37-118 3-84 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.2 0.00082 2.8E-08 55.5 7.2 74 35-115 20-94 (119)
212 1whv_A Poly(A)-specific ribonu 96.9 0.0024 8.2E-08 50.7 6.9 56 38-101 15-70 (100)
213 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.8E-08 51.7 4.9 55 39-101 6-60 (101)
214 2dhx_A Poly (ADP-ribose) polym 96.7 0.012 4E-07 47.2 9.6 71 37-115 6-81 (104)
215 1uw4_A UPF3X; nonsense mediate 96.6 0.01 3.5E-07 46.6 8.7 76 40-115 2-85 (91)
216 3p3d_A Nucleoporin 53; structu 95.7 0.015 5.2E-07 48.6 5.8 77 38-116 6-97 (132)
217 3pgw_S U1-70K; protein-RNA com 94.8 0.088 3E-06 52.8 9.2 22 87-110 148-169 (437)
218 3pq1_A Poly(A) RNA polymerase; 94.6 0.02 6.9E-07 57.9 3.8 55 40-99 54-108 (464)
219 2kn4_A Immunoglobulin G-bindin 94.2 0.037 1.3E-06 46.9 4.1 36 68-104 2-37 (158)
220 3u1c_A Tropomyosin alpha-1 cha 94.0 1.2 4.2E-05 35.2 12.4 45 280-324 19-63 (101)
221 2l08_A Regulator of nonsense t 93.8 0.066 2.2E-06 42.4 4.5 77 39-115 9-93 (97)
222 2i2y_A Fusion protein consists 93.3 0.025 8.6E-07 47.7 1.5 39 78-117 11-50 (150)
223 3u59_A Tropomyosin beta chain; 91.3 3.8 0.00013 32.3 11.9 45 280-324 19-63 (101)
224 2akf_A Coronin-1A; coiled coil 90.2 0.49 1.7E-05 28.6 4.2 31 293-323 1-31 (32)
225 2dfs_A Myosin-5A; myosin-V, in 86.5 6.9 0.00023 43.6 13.7 17 307-323 986-1002(1080)
226 1x79_B RAB GTPase binding effe 85.1 9.7 0.00033 30.7 10.3 63 297-359 37-103 (112)
227 3d45_A Poly(A)-specific ribonu 84.0 2.1 7.2E-05 43.6 7.5 56 38-101 439-494 (507)
228 3a7p_A Autophagy protein 16; c 81.1 20 0.00067 30.4 11.1 62 304-368 74-135 (152)
229 1m1j_C Fibrinogen gamma chain; 79.8 24 0.00084 34.7 13.2 33 278-310 35-67 (409)
230 1wlq_A Geminin; coiled-coil; 2 78.8 5.8 0.0002 30.1 6.4 30 336-365 41-70 (83)
231 3pdy_A Plectin; cytoskeleton, 78.8 22 0.00075 31.2 11.6 84 276-359 37-128 (210)
232 1uii_A Geminin; human, DNA rep 78.3 6.9 0.00024 29.7 6.7 31 336-366 49-79 (83)
233 1ic2_A Tropomyosin alpha chain 78.0 19 0.00065 27.0 9.3 38 286-323 22-59 (81)
234 3o0z_A RHO-associated protein 77.5 34 0.0012 29.4 13.8 33 289-321 32-64 (168)
235 1x79_B RAB GTPase binding effe 77.2 27 0.00091 28.1 10.6 17 333-349 59-75 (112)
236 2xus_A Breast cancer metastasi 76.8 4.9 0.00017 27.5 4.9 31 332-362 12-44 (49)
237 2g0c_A ATP-dependent RNA helic 76.5 5.4 0.00019 29.2 5.8 68 41-116 2-75 (76)
238 1t6f_A Geminin; coiled-coil, c 76.1 2.7 9.3E-05 26.6 3.2 27 336-362 10-36 (37)
239 1m1j_B Fibrinogen beta chain; 76.1 49 0.0017 33.1 14.2 17 278-294 97-113 (464)
240 3ghg_A Fibrinogen alpha chain; 74.6 21 0.00071 36.2 10.9 21 349-369 140-160 (562)
241 2v71_A Nuclear distribution pr 74.0 46 0.0016 29.2 14.7 60 296-355 47-110 (189)
242 3oja_B Anopheles plasmodium-re 72.4 36 0.0012 34.5 12.8 29 309-337 513-541 (597)
243 4h22_A Leucine-rich repeat fli 72.0 26 0.00088 27.6 8.7 37 288-324 27-63 (103)
244 3tnu_A Keratin, type I cytoske 71.5 17 0.00058 29.8 8.2 73 290-365 37-113 (131)
245 3tnu_B Keratin, type II cytosk 71.5 23 0.00079 28.9 9.0 73 290-365 35-111 (129)
246 1t3j_A Mitofusin 1; coiled coi 70.9 9.8 0.00034 29.7 6.1 42 302-343 51-95 (96)
247 1m1j_C Fibrinogen gamma chain; 70.0 63 0.0022 31.8 13.2 34 284-317 31-67 (409)
248 4etp_A Kinesin-like protein KA 69.5 13 0.00044 36.6 8.2 34 292-325 4-37 (403)
249 2wvr_A Geminin; DNA replicatio 68.7 11 0.00039 33.2 6.7 30 336-365 118-147 (209)
250 3a7p_A Autophagy protein 16; c 68.4 53 0.0018 27.7 11.5 71 275-352 59-129 (152)
251 1c1g_A Tropomyosin; contractIl 67.4 62 0.0021 28.1 14.7 37 284-320 20-56 (284)
252 2l5g_B Putative uncharacterize 67.3 12 0.00041 24.6 4.9 28 293-320 11-38 (42)
253 1c1g_A Tropomyosin; contractIl 67.3 63 0.0021 28.1 12.9 29 289-317 18-46 (284)
254 1wt6_A Myotonin-protein kinase 67.0 31 0.0011 26.0 7.8 40 278-317 18-57 (81)
255 2pih_A Protein YMCA; regulate 65.3 20 0.00069 30.1 7.5 52 334-386 74-127 (151)
256 2oqq_A Transcription factor HY 65.1 21 0.00071 23.4 5.7 30 293-322 5-34 (42)
257 2p22_C Protein SRN2; endosome, 64.8 28 0.00096 30.6 8.6 8 335-342 102-109 (192)
258 3iv1_A Tumor susceptibility ge 64.1 43 0.0015 25.1 9.1 65 284-362 11-75 (78)
259 1m1j_B Fibrinogen beta chain; 63.8 1.1E+02 0.0039 30.5 13.7 20 284-303 93-112 (464)
260 3nmd_A CGMP dependent protein 63.8 14 0.00047 27.3 5.3 27 290-316 39-65 (72)
261 3uun_A Dystrophin; triple heli 63.7 42 0.0014 25.7 8.9 38 291-328 33-70 (119)
262 2zxx_A Geminin; coiled-coil, c 63.3 6.1 0.00021 29.8 3.4 35 336-370 37-71 (79)
263 3r6n_A Desmoplakin; spectrin r 63.3 48 0.0017 33.0 11.1 81 276-357 34-114 (450)
264 1ci6_A Transcription factor AT 63.2 21 0.00071 25.5 6.2 35 291-325 23-57 (63)
265 4dyl_A Tyrosine-protein kinase 62.2 44 0.0015 32.5 10.5 87 286-375 311-397 (406)
266 3ol1_A Vimentin; structural ge 61.0 42 0.0014 27.0 8.4 75 288-362 38-113 (119)
267 3viq_B Mating-type switching p 59.6 30 0.001 26.4 6.7 49 305-355 8-57 (85)
268 2efr_A General control protein 59.3 81 0.0028 26.7 14.3 18 333-350 98-115 (155)
269 2fxo_A Myosin heavy chain, car 58.9 71 0.0024 25.9 11.1 37 285-321 14-50 (129)
270 1kd8_B GABH BLL, GCN4 acid bas 58.7 31 0.0011 21.7 5.4 27 293-319 3-29 (36)
271 1vp7_A Exodeoxyribonuclease VI 58.7 48 0.0016 26.0 8.0 33 339-371 61-93 (100)
272 3hnw_A Uncharacterized protein 58.6 77 0.0026 26.2 10.6 13 333-345 103-115 (138)
273 3cvf_A Homer-3, homer protein 58.5 37 0.0013 25.5 6.9 48 296-343 11-58 (79)
274 3bas_A Myosin heavy chain, str 58.5 58 0.002 24.7 11.7 66 287-366 17-82 (89)
275 3na7_A HP0958; flagellar bioge 58.0 91 0.0031 28.2 11.3 37 287-323 35-71 (256)
276 3u0c_A Invasin IPAB, 62 kDa an 57.9 79 0.0027 27.1 9.7 69 292-360 69-141 (201)
277 3o0z_A RHO-associated protein 57.8 91 0.0031 26.8 11.9 56 300-355 57-112 (168)
278 2oxj_A Hybrid alpha/beta pepti 57.8 24 0.00082 22.0 4.7 28 293-320 3-30 (34)
279 1i84_S Smooth muscle myosin he 57.5 61 0.0021 36.3 11.7 31 290-320 863-893 (1184)
280 1avo_B 11S regulator; proteaso 56.8 69 0.0024 26.6 9.2 54 299-352 47-108 (140)
281 3cl3_D NF-kappa-B essential mo 56.6 46 0.0016 27.2 7.7 40 317-356 67-107 (130)
282 2wq1_A General control protein 56.4 27 0.00091 21.6 4.7 21 307-327 9-29 (33)
283 1hx1_B BAG-1, BAG-family molec 55.9 22 0.00077 28.5 5.7 40 330-369 29-68 (114)
284 1gd2_E Transcription factor PA 55.7 31 0.0011 25.2 6.1 21 301-321 25-45 (70)
285 1i84_S Smooth muscle myosin he 55.3 66 0.0023 36.0 11.5 18 47-64 546-563 (1184)
286 1kd8_A GABH AIV, GCN4 acid bas 55.3 27 0.00094 22.0 4.7 29 293-321 3-31 (36)
287 3uul_A Utrophin; spectrin repe 54.8 55 0.0019 25.1 8.1 36 293-328 35-70 (118)
288 2efr_A General control protein 54.6 98 0.0034 26.2 12.9 76 282-360 68-150 (155)
289 3cve_A Homer protein homolog 1 53.0 66 0.0022 23.7 7.9 46 298-343 7-52 (72)
290 3swk_A Vimentin; cytoskeleton, 51.9 51 0.0017 25.0 7.0 70 284-353 14-83 (86)
291 3e7k_A TRPM7 channel; coiled-c 51.7 25 0.00084 24.6 4.6 26 337-362 10-35 (56)
292 3u06_A Protein claret segregat 51.5 40 0.0014 33.2 8.0 25 295-319 7-31 (412)
293 3m48_A General control protein 51.4 20 0.0007 22.2 3.7 21 307-327 9-29 (33)
294 3c3g_A Alpha/beta peptide with 50.4 38 0.0013 20.9 4.7 21 307-327 9-29 (33)
295 3a7o_A Autophagy protein 16; c 50.4 71 0.0024 23.3 7.3 25 289-313 16-40 (75)
296 3u59_A Tropomyosin beta chain; 49.8 88 0.003 24.2 13.5 61 278-341 6-66 (101)
297 3ghg_B Fibrinogen beta chain; 48.7 93 0.0032 31.0 10.1 97 273-369 87-192 (461)
298 3vkg_A Dynein heavy chain, cyt 48.2 1.9E+02 0.0063 36.2 14.3 9 336-344 2045-2053(3245)
299 3c3f_A Alpha/beta peptide with 48.1 43 0.0015 20.8 4.7 22 306-327 9-30 (34)
300 3mxz_A Tubulin-specific chaper 47.9 1.1E+02 0.0036 24.6 11.9 41 333-374 53-93 (116)
301 3ghg_B Fibrinogen beta chain; 46.9 2.3E+02 0.0079 28.2 12.7 50 283-332 87-136 (461)
302 3vkg_A Dynein heavy chain, cyt 46.9 2.3E+02 0.0079 35.4 14.9 33 287-319 2010-2042(3245)
303 1hjb_A Ccaat/enhancer binding 46.2 94 0.0032 23.6 7.7 26 296-321 41-66 (87)
304 2iak_A Bullous pemphigoid anti 45.1 1.5E+02 0.0053 25.7 12.5 83 275-357 51-141 (224)
305 1ci6_A Transcription factor AT 45.0 80 0.0027 22.3 7.0 38 284-321 23-60 (63)
306 2b5u_A Colicin E3; high resolu 44.8 1.2E+02 0.0042 30.5 10.1 13 358-370 406-418 (551)
307 3c3f_A Alpha/beta peptide with 44.6 40 0.0014 20.9 4.2 29 293-321 3-31 (34)
308 2kes_A Synphilin-1; synphillin 44.3 65 0.0022 21.1 5.5 30 288-317 8-37 (48)
309 2ve7_A Kinetochore protein HEC 44.1 37 0.0013 32.1 6.3 45 287-331 174-218 (315)
310 2dq0_A Seryl-tRNA synthetase; 42.6 1.2E+02 0.004 30.2 9.9 34 291-324 31-64 (455)
311 3lf9_A 4E10_D0_1IS1A_001_C (T1 42.6 24 0.00082 28.6 3.9 82 287-371 18-100 (121)
312 2xs1_A Programmed cell death 6 42.5 2.5E+02 0.0084 29.4 13.0 57 306-362 606-662 (704)
313 1t7s_A BAG-1 cochaperone; stru 42.5 50 0.0017 27.4 5.9 47 323-369 31-77 (137)
314 3htk_A Structural maintenance 42.5 81 0.0028 21.7 8.1 29 332-360 29-57 (60)
315 2w83_C C-JUN-amino-terminal ki 42.0 1E+02 0.0036 22.8 8.4 25 338-362 53-77 (77)
316 1uo4_A General control protein 41.9 43 0.0015 20.9 4.1 23 306-328 9-31 (34)
317 1gu4_A CAAT/enhancer binding p 41.8 73 0.0025 23.7 6.3 34 293-326 38-71 (78)
318 3qne_A Seryl-tRNA synthetase, 41.7 1.4E+02 0.0047 30.0 10.3 33 292-324 34-66 (485)
319 3oja_A Leucine-rich immune mol 41.6 1.7E+02 0.0056 28.8 11.0 32 336-367 438-469 (487)
320 2bni_A General control protein 41.5 42 0.0014 20.9 4.0 24 305-328 8-31 (34)
321 3he5_A Synzip1; heterodimeric 41.2 71 0.0024 20.7 6.7 40 307-346 5-44 (49)
322 3mq9_A Bone marrow stromal ant 40.9 2.6E+02 0.0089 27.1 12.6 20 303-322 402-421 (471)
323 4emc_A Monopolin complex subun 40.9 1.3E+02 0.0043 26.3 8.5 25 298-322 13-37 (190)
324 1deq_A Fibrinogen (alpha chain 40.1 2E+02 0.0069 27.8 10.6 49 297-345 66-114 (390)
325 3mq7_A Bone marrow stromal ant 39.7 1.2E+02 0.0043 24.3 7.6 55 285-342 58-112 (121)
326 3ol1_A Vimentin; structural ge 39.6 1.4E+02 0.0049 23.7 13.7 28 287-314 30-57 (119)
327 1eh1_A Ribosome recycling fact 39.5 1.1E+02 0.0037 26.7 8.0 57 309-371 113-173 (185)
328 3lhp_S 4E10_D0_1ISEA_004_N (T9 39.4 34 0.0012 27.8 4.4 61 308-371 49-110 (123)
329 2e7s_A RAB guanine nucleotide 39.3 43 0.0015 27.7 5.1 14 353-366 70-83 (135)
330 4e8u_A Putative uncharacterize 38.9 54 0.0018 28.3 5.9 56 41-98 14-81 (172)
331 3iyk_A VP5; icosahedral virus; 38.6 3E+02 0.01 27.6 11.8 68 308-375 142-226 (526)
332 4ani_A Protein GRPE; chaperone 38.4 94 0.0032 27.7 7.6 66 288-353 56-126 (213)
333 2aze_B Transcription factor E2 38.4 67 0.0023 25.3 6.0 35 287-321 9-43 (106)
334 3oja_A Leucine-rich immune mol 38.3 1.6E+02 0.0054 28.9 10.2 17 324-340 433-449 (487)
335 1wle_A Seryl-tRNA synthetase; 38.2 2.6E+02 0.0089 28.1 11.8 32 292-323 71-102 (501)
336 3n7n_E Monopolin complex subun 38.1 6.7 0.00023 30.3 0.0 38 332-369 49-86 (95)
337 1gu4_A CAAT/enhancer binding p 37.9 47 0.0016 24.8 4.7 12 333-344 64-75 (78)
338 1uo4_A General control protein 37.6 46 0.0016 20.7 3.7 28 294-321 4-31 (34)
339 4gfq_A Ribosome-recycling fact 37.4 86 0.0029 27.9 7.1 22 350-371 175-196 (209)
340 1gmj_A ATPase inhibitor; coile 37.3 1.3E+02 0.0045 22.7 7.2 6 278-283 24-29 (84)
341 4etp_A Kinesin-like protein KA 37.3 1.1E+02 0.0036 29.9 8.6 39 287-325 6-44 (403)
342 3lpe_A Putative transcription 37.2 74 0.0025 24.1 6.0 35 66-104 40-74 (92)
343 2d1l_A Metastasis suppressor p 37.2 2.2E+02 0.0074 26.0 10.1 24 346-369 174-197 (253)
344 4fla_A Regulation of nuclear P 37.2 1.8E+02 0.0063 24.3 10.7 25 342-366 123-147 (152)
345 1kd8_B GABH BLL, GCN4 acid bas 36.9 65 0.0022 20.3 4.3 29 299-327 2-30 (36)
346 2ke4_A CDC42-interacting prote 36.5 1.5E+02 0.0051 23.0 8.6 15 345-359 64-78 (98)
347 3c3g_A Alpha/beta peptide with 36.4 65 0.0022 19.9 4.2 28 294-321 3-30 (33)
348 2w6a_A ARF GTPase-activating p 36.4 1.1E+02 0.0038 21.5 8.0 30 324-353 32-61 (63)
349 2hy6_A General control protein 36.2 78 0.0027 19.7 4.6 21 307-327 10-30 (34)
350 1dd5_A Ribosome recycling fact 36.1 1.5E+02 0.005 25.8 8.3 58 308-371 111-172 (185)
351 1ise_A Ribosome recycling fact 35.9 1.4E+02 0.0048 25.9 8.2 57 309-371 112-172 (185)
352 3mq9_A Bone marrow stromal ant 35.5 3.2E+02 0.011 26.5 14.0 16 345-360 445-460 (471)
353 1y1u_A Signal transducer and a 35.2 3.3E+02 0.011 28.0 12.0 43 308-350 75-118 (585)
354 1hjb_A Ccaat/enhancer binding 35.1 1.5E+02 0.005 22.5 8.7 41 306-346 37-77 (87)
355 3efg_A Protein SLYX homolog; x 34.8 1.4E+02 0.0047 22.1 7.1 46 307-355 16-61 (78)
356 2yy0_A C-MYC-binding protein; 34.5 30 0.001 23.8 2.9 21 299-319 20-40 (53)
357 3u06_A Protein claret segregat 34.5 1.1E+02 0.0038 29.9 8.2 38 286-323 5-42 (412)
358 1yzm_A FYVE-finger-containing 34.3 70 0.0024 21.9 4.6 21 298-318 28-48 (51)
359 3csx_A Putative uncharacterize 34.3 1.4E+02 0.0048 22.4 6.8 26 334-359 55-80 (81)
360 2dgc_A Protein (GCN4); basic d 34.3 99 0.0034 21.9 5.8 39 323-361 20-58 (63)
361 1cxz_B Protein (PKN); protein- 33.8 1.5E+02 0.0053 22.4 7.0 57 299-362 22-82 (86)
362 1is1_A Ribosome recycling fact 33.3 1.4E+02 0.0049 25.9 7.8 58 308-371 111-172 (185)
363 2wq1_A General control protein 33.3 84 0.0029 19.4 4.3 28 294-321 3-30 (33)
364 2x3v_A Syndapin I, protein kin 33.3 2.9E+02 0.01 25.4 11.4 26 324-349 210-235 (337)
365 1ge9_A Ribosome recycling fact 33.1 71 0.0024 27.8 5.8 59 307-371 112-171 (184)
366 3m48_A General control protein 33.1 60 0.002 20.1 3.7 28 294-321 3-30 (33)
367 1dh3_A Transcription factor CR 33.0 1.2E+02 0.004 20.8 5.9 29 333-361 22-50 (55)
368 3iyk_A VP5; icosahedral virus; 32.9 3.9E+02 0.013 26.8 13.2 24 346-369 156-179 (526)
369 1wqg_A Ribosome recycling fact 32.4 1.5E+02 0.0052 25.7 7.8 57 309-371 112-172 (185)
370 1l8d_A DNA double-strand break 31.6 1.8E+02 0.0061 22.4 12.6 35 290-324 9-43 (112)
371 2js5_A Uncharacterized protein 31.5 1.3E+02 0.0046 21.9 6.1 24 334-357 43-66 (71)
372 2r2v_A GCN4 leucine zipper; co 30.9 95 0.0033 19.3 4.3 22 306-327 9-30 (34)
373 1kd8_A GABH AIV, GCN4 acid bas 30.9 72 0.0025 20.1 3.8 28 300-327 3-30 (36)
374 2w83_C C-JUN-amino-terminal ki 30.8 84 0.0029 23.3 4.9 38 284-321 37-74 (77)
375 2zxx_A Geminin; coiled-coil, c 30.8 1.7E+02 0.0057 21.9 7.8 49 313-365 25-73 (79)
376 4eyt_A Telomerase associated p 30.3 1.9E+02 0.0063 22.2 8.6 59 37-102 10-68 (129)
377 3ghg_C Fibrinogen gamma chain; 30.1 4E+02 0.014 26.0 12.5 29 274-302 31-59 (411)
378 1t3j_A Mitofusin 1; coiled coi 30.0 1.9E+02 0.0064 22.4 7.1 42 284-325 47-91 (96)
379 2aze_A Transcription factor DP 29.9 1.1E+02 0.0038 25.8 6.2 37 285-321 6-42 (155)
380 2oeq_A Protein of unknown func 29.8 2.1E+02 0.0071 22.6 8.8 36 333-368 68-105 (122)
381 3hnw_A Uncharacterized protein 29.6 2.3E+02 0.008 23.2 12.1 6 336-341 113-118 (138)
382 4hpq_C ATG17, KLTH0D15642P; au 29.5 4.1E+02 0.014 26.0 11.6 72 293-364 251-326 (413)
383 2wvr_A Geminin; DNA replicatio 29.5 1.9E+02 0.0066 25.4 7.8 15 284-298 115-129 (209)
384 1f5n_A Interferon-induced guan 29.4 3.1E+02 0.01 28.2 10.8 18 348-365 565-582 (592)
385 3he5_B Synzip2; heterodimeric 29.2 1.2E+02 0.004 19.9 4.8 32 291-322 17-48 (52)
386 3tul_A Cell invasion protein S 29.0 2.5E+02 0.0085 23.5 8.0 26 334-359 67-92 (158)
387 2w6b_A RHO guanine nucleotide 28.7 1.5E+02 0.005 20.5 6.6 37 285-321 11-47 (56)
388 2yy0_A C-MYC-binding protein; 27.9 1E+02 0.0036 21.0 4.8 28 287-314 22-49 (53)
389 2pms_C Pneumococcal surface pr 27.6 2.2E+02 0.0076 23.1 7.4 48 299-346 62-109 (125)
390 4egx_A Kinesin-like protein KI 27.5 1.1E+02 0.0037 26.4 6.0 12 299-310 13-24 (184)
391 3ni0_A Bone marrow stromal ant 26.9 1.6E+02 0.0056 22.7 6.1 43 314-363 45-87 (99)
392 3i00_A HIP-I, huntingtin-inter 26.9 2.5E+02 0.0084 22.6 11.2 39 286-327 24-62 (120)
393 4dvz_A Cytotoxicity-associated 26.7 3.6E+02 0.012 26.3 9.9 64 274-337 354-431 (569)
394 3h7h_B Transcription elongatio 26.6 96 0.0033 24.4 5.0 36 65-104 40-75 (106)
395 1f5n_A Interferon-induced guan 26.5 3.5E+02 0.012 27.7 10.7 29 299-327 495-523 (592)
396 2z5i_A TM, general control pro 26.5 1.5E+02 0.0053 20.1 5.6 27 299-325 6-32 (52)
397 1nkp_B MAX protein, MYC proto- 26.4 1E+02 0.0036 22.7 5.0 38 277-314 40-77 (83)
398 2ybf_B E3 ubiquitin-protein li 26.2 42 0.0014 19.7 2.0 16 353-368 5-20 (27)
399 1dip_A Delta-sleep-inducing pe 26.2 65 0.0022 23.8 3.5 31 298-328 15-45 (78)
400 2oxj_A Hybrid alpha/beta pepti 26.1 90 0.0031 19.4 3.6 28 300-327 3-30 (34)
401 3l4q_C Phosphatidylinositol 3- 25.9 3.1E+02 0.011 23.4 9.5 57 280-336 99-155 (170)
402 3ok8_A Brain-specific angiogen 25.9 3.4E+02 0.011 24.2 9.1 45 293-337 103-155 (222)
403 3plt_A Sphingolipid long chain 25.8 3.7E+02 0.013 24.2 11.5 82 274-356 97-184 (234)
404 1i6z_A BAG-family molecular ch 25.8 1.2E+02 0.0043 24.9 5.7 17 352-368 94-110 (135)
405 1zxa_A CGMP-dependent protein 25.7 95 0.0033 22.5 4.4 50 272-324 9-58 (67)
406 3ts2_A Protein LIN-28 homolog 25.2 12 0.0004 31.6 -0.7 28 54-88 2-29 (148)
407 3aco_A Pacsin2, protein kinase 25.0 4.2E+02 0.014 24.6 10.8 39 322-360 217-256 (350)
408 3hhm_B NISH2 P85alpha; PI3KCA, 25.0 1.7E+02 0.0058 28.2 7.5 28 290-317 218-245 (373)
409 1p9i_A Cortexillin I/GCN4 hybr 24.8 79 0.0027 18.6 3.0 26 345-370 4-29 (31)
410 1u4q_A Spectrin alpha chain, b 24.2 3.9E+02 0.013 23.9 13.2 80 276-355 35-128 (322)
411 2ykt_A Brain-specific angiogen 24.0 4E+02 0.014 24.0 10.3 22 293-314 105-126 (253)
412 1z0k_B FYVE-finger-containing 23.9 64 0.0022 23.5 3.2 21 298-318 46-66 (69)
413 3tnu_A Keratin, type I cytoske 23.7 2.8E+02 0.0097 22.2 11.2 8 314-321 86-93 (131)
414 3ljm_A Coil Ser L9C; de novo d 23.4 1.2E+02 0.0041 17.8 4.2 19 304-322 7-25 (31)
415 3efg_A Protein SLYX homolog; x 23.3 2.3E+02 0.0077 20.9 7.5 39 285-323 15-53 (78)
416 2yko_A LINE-1 ORF1P; RNA-bindi 23.1 1.4E+02 0.0047 27.0 5.9 12 358-369 70-81 (233)
417 3m9b_A Proteasome-associated A 23.0 89 0.003 28.6 4.7 19 300-318 56-74 (251)
418 1wlq_A Geminin; coiled-coil; 2 23.0 2.4E+02 0.0083 21.2 8.3 46 314-363 30-75 (83)
419 2wt7_A Proto-oncogene protein 23.0 2E+02 0.0068 20.1 8.9 50 313-362 3-52 (63)
420 3lss_A Seryl-tRNA synthetase; 22.6 5.2E+02 0.018 25.8 10.7 25 345-369 113-140 (484)
421 2dgc_A Protein (GCN4); basic d 22.4 1.1E+02 0.0039 21.5 4.3 14 304-317 29-42 (63)
422 2l5g_A GPS2 protein, G protein 22.2 1.6E+02 0.0054 18.7 4.7 18 284-301 8-25 (38)
423 4ayc_A E3 ubiquitin-protein li 22.1 2.6E+02 0.0088 22.3 7.1 28 310-337 18-45 (138)
424 3d5a_X RF1, peptide chain rele 21.7 5.1E+02 0.017 24.8 10.0 20 344-363 77-96 (354)
425 3qne_A Seryl-tRNA synthetase, 21.3 5.2E+02 0.018 25.8 10.4 18 344-361 79-96 (485)
426 2ocy_A RAB guanine nucleotide 21.2 3.7E+02 0.013 22.6 12.5 67 301-367 68-135 (154)
427 2z5i_A TM, general control pro 21.2 1.5E+02 0.0051 20.2 4.5 36 334-369 13-48 (52)
428 1m3w_A H10H24; four-helix bund 20.9 1.4E+02 0.0048 17.6 4.1 25 334-360 5-29 (32)
429 3s4r_A Vimentin; alpha-helix, 20.8 2.8E+02 0.0096 21.0 12.3 77 287-365 12-88 (93)
430 1g6u_A Domain swapped dimer; d 20.6 1.8E+02 0.0061 18.7 5.7 7 290-296 6-12 (48)
431 3fb2_A Spectrin alpha chain, b 20.5 3.9E+02 0.013 22.6 12.0 62 276-337 45-117 (218)
432 3f6n_A Virion-associated prote 20.4 2.7E+02 0.0092 22.5 6.4 8 347-354 52-59 (129)
433 2w6b_A RHO guanine nucleotide 20.4 2.2E+02 0.0075 19.6 5.9 12 316-327 32-43 (56)
434 2dq3_A Seryl-tRNA synthetase; 20.4 1.1E+02 0.0038 30.0 5.2 24 298-321 37-60 (425)
435 3v1a_A Computational design, M 20.1 1.2E+02 0.0041 20.5 3.7 18 298-315 27-44 (48)
436 1lwu_C Fibrinogen gamma chain; 20.1 2.3E+02 0.0079 26.8 7.1 30 293-322 7-36 (323)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=8.2e-22 Score=200.19 Aligned_cols=85 Identities=25% Similarity=0.497 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.||+++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999998766 8899999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987554
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=146.50 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+++|||+|||+++|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|++|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=8.9e-19 Score=153.00 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=81.2
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
.....+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|++..|.|+.|.
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 334567899999999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|+|+.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987554
No 4
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.1e-18 Score=146.86 Aligned_cols=89 Identities=24% Similarity=0.383 Sum_probs=81.3
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344566789999999999999999999999999999999998755 8899999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016463 112 VSEVATRGRK 121 (389)
Q Consensus 112 V~~a~~~~~~ 121 (389)
|.++.+....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=142.28 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ +++|||||+|.+.++|+.||..|||..|+|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999886 89999999999999999999999999999999999998
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=136.06 Aligned_cols=85 Identities=34% Similarity=0.661 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999998765 88999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016463 116 ATRGRK 121 (389)
Q Consensus 116 ~~~~~~ 121 (389)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 7
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-18 Score=144.36 Aligned_cols=87 Identities=33% Similarity=0.543 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999998776 789999999999999999999999999999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=141.45 Aligned_cols=86 Identities=30% Similarity=0.657 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..++.++|||+|||+++++++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34667999999999999999999999999999999999998558999999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976543
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=133.21 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 356789999999999999999999999999999999998755 8899999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 10
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=138.85 Aligned_cols=88 Identities=35% Similarity=0.537 Sum_probs=81.0
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567899999999999999999999999999999999998775 8899999999999999999999999999999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|.++.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986554
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=137.64 Aligned_cols=87 Identities=22% Similarity=0.423 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=135.53 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999999998855 8999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 016463 115 VATRGRK 121 (389)
Q Consensus 115 a~~~~~~ 121 (389)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876553
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=138.37 Aligned_cols=88 Identities=30% Similarity=0.467 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34566799999999999999999999999999999999998755 89999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876553
No 14
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=135.96 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.+.++|||+|||+.+++++|..+|.+||.|..| .|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 99998655 8899999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=2e-17 Score=136.86 Aligned_cols=87 Identities=28% Similarity=0.522 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|+.+|..||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3567799999999999999999999999999999999998755 889999999999999999999999999999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.+....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 16
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.9e-18 Score=130.25 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999998665 8899999999999999999999999999999999999976
Q ss_pred cC
Q 016463 118 RG 119 (389)
Q Consensus 118 ~~ 119 (389)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=135.11 Aligned_cols=86 Identities=31% Similarity=0.589 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+. |++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999998766 889999999999999999999 99999999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=134.66 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ ++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3566799999999999999999999999999999999998655 689999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987554
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=134.81 Aligned_cols=85 Identities=21% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999985589999999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=136.89 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456799999999999999999999999999999999998666 8899999999999999999999999999999999999
Q ss_pred ecccCCC
Q 016463 115 VATRGRK 121 (389)
Q Consensus 115 a~~~~~~ 121 (389)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=136.30 Aligned_cols=86 Identities=27% Similarity=0.549 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ .+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 55889999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-18 Score=136.52 Aligned_cols=85 Identities=44% Similarity=0.804 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999998766 7899999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 23
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.8e-18 Score=134.64 Aligned_cols=85 Identities=24% Similarity=0.523 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCC---C-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS---T-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~---~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
.+.++|||+|||+++++++|..+|.+||.|..|.|+.+.. + .++|||||+|.+.++|+.|+..|+|..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998765 4 78999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=134.58 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
+..+.++|||+|||+.+++++|+ .+|++||.|..|.|+.+..+ +|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 35567899999999999999999 99999999999999988776 8999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 016463 111 RVSEVATRGR 120 (389)
Q Consensus 111 ~V~~a~~~~~ 120 (389)
.|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976554
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1e-17 Score=138.68 Aligned_cols=86 Identities=29% Similarity=0.534 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+++++++|.++|..||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999855 899999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 26
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=136.02 Aligned_cols=86 Identities=23% Similarity=0.494 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCC--CCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~--~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
....+.++|||+|||+.+++++|..+|..|| |..|.|+.+.. +.++|||||+|.+.++|+.|| .|++..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3345679999999999999999999999999 99999999876 478999999999999999999 8999999999999
Q ss_pred EEEecccCCC
Q 016463 112 VSEVATRGRK 121 (389)
Q Consensus 112 V~~a~~~~~~ 121 (389)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 27
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=133.59 Aligned_cols=87 Identities=24% Similarity=0.515 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ ++|||||+|.+.++|+.|+..|+|..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33556799999999999999999999999999999999988665 88999999999999999999999999999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=136.79 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 33456789999999999999999999999999999999999876 88999999999999999999999999999999999
Q ss_pred EEecccC
Q 016463 113 SEVATRG 119 (389)
Q Consensus 113 ~~a~~~~ 119 (389)
.++.+..
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998754
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=137.52 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcC-CceeccEEEEEEEec
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN-GRTIDGRVVRVSEVA 116 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~-g~~i~Gr~l~V~~a~ 116 (389)
.+|||+|||+.+|+++|..+|++|| .|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+ +..|+|++|.|+++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999999876 899999999999999999999874 567999999999998
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=8.6e-18 Score=139.64 Aligned_cols=80 Identities=29% Similarity=0.540 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|+.||..|+|..|+|+.|.|.++.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999998644 7899999999999999999999999999999999998764
Q ss_pred C
Q 016463 119 G 119 (389)
Q Consensus 119 ~ 119 (389)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=136.77 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcC------Cceecc
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN------GRTIDG 107 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~------g~~i~G 107 (389)
...+.++|||+|||+++++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..||..|+ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4566789999999999999999999999999999999998776 789999999999999999999999 999999
Q ss_pred EEEEEEEecccCCC
Q 016463 108 RVVRVSEVATRGRK 121 (389)
Q Consensus 108 r~l~V~~a~~~~~~ 121 (389)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 32
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.9e-17 Score=134.36 Aligned_cols=85 Identities=24% Similarity=0.501 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|.+|| |..|.|+.+..+ .++|||||+|.+.++|+.|+ .|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455679999999999999999999999997 999999999876 88999999999999999999 79999999999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987554
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1e-17 Score=130.71 Aligned_cols=81 Identities=27% Similarity=0.502 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999999988655 7899999999999999999999999999999999998
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=1.7e-17 Score=134.97 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc---EEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG---RVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G---r~l~V 112 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|+.||..|+|..|.| +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356799999999999999999999999999999999999866889999999999999999999999999998 99999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
.++.+....
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 35
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=135.85 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce-eccEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~-i~Gr~l~V~ 113 (389)
..+.++|||+|||+++++++|..+|.+ ||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456799999999999999999999999 999999999999855899999999999999999999999999 999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9876554
No 36
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=134.56 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc-----EEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-----r~l~ 111 (389)
...++|||+|||+++++++|.++|.+||.|..|.|+.+ |||||+|.+.++|+.||..|||..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45689999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEEecccC
Q 016463 112 VSEVATRG 119 (389)
Q Consensus 112 V~~a~~~~ 119 (389)
|+++.++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99988744
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=132.70 Aligned_cols=83 Identities=36% Similarity=0.565 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|+|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3556789999999999999999999999999999999998876 889999999999999999999999999999999999
Q ss_pred Eecc
Q 016463 114 EVAT 117 (389)
Q Consensus 114 ~a~~ 117 (389)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.4e-17 Score=133.49 Aligned_cols=83 Identities=25% Similarity=0.542 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
|.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999999998765 889999999999999999999999999999999999997
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6543
No 39
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.4e-17 Score=136.71 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999998765 889999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=132.67 Aligned_cols=83 Identities=31% Similarity=0.522 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567899999999999999999999999999999999988778899999999999999999999999999999999998
Q ss_pred ecc
Q 016463 115 VAT 117 (389)
Q Consensus 115 a~~ 117 (389)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 41
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=2.3e-17 Score=134.54 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999855899999999999999999999999999999999999
Q ss_pred Eec
Q 016463 114 EVA 116 (389)
Q Consensus 114 ~a~ 116 (389)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=135.20 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCC-CCceEEEEEEcChHHHHHHHHhc-CCceeccEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVR 111 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d-~~~-~~kG~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~ 111 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ ..+ .++|||||+|.+.++|+.||..| +|..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456799999999999999999999999999999999988 444 88999999999999999999999 99999999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|.++.+...
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=134.06 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEE---
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--- 109 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~-~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~--- 109 (389)
...+.++|||+|||+++++++|..+|.+||.|. .|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356779999999999999999999999999999 9999999766 89999999999999999999999999999999
Q ss_pred -EEEEEecccCC
Q 016463 110 -VRVSEVATRGR 120 (389)
Q Consensus 110 -l~V~~a~~~~~ 120 (389)
|.|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999876543
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=131.78 Aligned_cols=81 Identities=33% Similarity=0.607 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999998776 8899999999999999999999999999999999999
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2.4e-17 Score=137.00 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999988765 88999999999999999999999999999999999
Q ss_pred EEec
Q 016463 113 SEVA 116 (389)
Q Consensus 113 ~~a~ 116 (389)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=134.93 Aligned_cols=85 Identities=33% Similarity=0.595 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3456799999999999999999999999999999999998766 8999999999999999999999998 8999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976544
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.5e-17 Score=135.51 Aligned_cols=86 Identities=21% Similarity=0.456 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcee---ccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i---~Gr~l 110 (389)
...+.++|||+|||+.+++++|+.+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3556799999999999999999999999999999999998775 8999999999999999999999999998 89999
Q ss_pred EEEEecccCC
Q 016463 111 RVSEVATRGR 120 (389)
Q Consensus 111 ~V~~a~~~~~ 120 (389)
.|.++.+...
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 48
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=133.86 Aligned_cols=84 Identities=27% Similarity=0.449 Sum_probs=77.7
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCc
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR 103 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--------v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~ 103 (389)
+....+.++|||+|||+++++++|..+|++||.|.. |.|+.++.+ .++|||||+|.+.++|+.|+..|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567799999999999999999999999999999 999998765 89999999999999999999999999
Q ss_pred eeccEEEEEEEec
Q 016463 104 TIDGRVVRVSEVA 116 (389)
Q Consensus 104 ~i~Gr~l~V~~a~ 116 (389)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-18 Score=136.57 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCc----eeccEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGS--VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVV 110 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~--I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~----~i~Gr~l 110 (389)
.-.+|||+|||+.+|+++|.++|++||. |..|.|+.|+.+ .++|||||+|.+.++|+.|+..|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 678999999876 89999999999999999999999997 5999999
Q ss_pred EEEEecc
Q 016463 111 RVSEVAT 117 (389)
Q Consensus 111 ~V~~a~~ 117 (389)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=134.33 Aligned_cols=85 Identities=29% Similarity=0.523 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ..++|||||+|.+.++|+.||..|++..|.|+.|.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33556789999999999999999999999999999999654 2478999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987654
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=129.95 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-C-CceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R-GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~-~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..++|||+|||+++++++|..+|++||.|..|.|+.+..+ . ++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999988765 3 8999999999999999999999999999999999999
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=136.17 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCcee
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i 105 (389)
...+.++|||+|||+.+++++|..+|.+||.|. .|.|+.++.+ .++|||||+|.+.++|+.||..|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999999 6999998665 8899999999999999999999999999
Q ss_pred ccEEEEEEEecccCC
Q 016463 106 DGRVVRVSEVATRGR 120 (389)
Q Consensus 106 ~Gr~l~V~~a~~~~~ 120 (389)
.|+.|.|.++.+...
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-17 Score=132.48 Aligned_cols=84 Identities=29% Similarity=0.368 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|+.+|.+||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45678999999999999999999999999999999999987788999999999999999999999999999999999998
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 54
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=3e-17 Score=144.83 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=79.8
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999999998766 8899999999999999999999999999999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|.|+.+...
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999987654
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=3e-17 Score=130.08 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|+.+|.+||.|..|.|+.+ .+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456799999999999999999999999999999999884 4478999999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 56
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=136.32 Aligned_cols=87 Identities=26% Similarity=0.360 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVR---KVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~---~~F~~~G~I~~v~v~~d~~~----~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
....+.++|||+|||+.+++++|. ++|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|||..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 99999999999999988754 46699999999999999999999999999
Q ss_pred cEEEEEEEecccCC
Q 016463 107 GRVVRVSEVATRGR 120 (389)
Q Consensus 107 Gr~l~V~~a~~~~~ 120 (389)
|++|.|.++.++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999987653
No 57
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=6.2e-17 Score=127.05 Aligned_cols=81 Identities=27% Similarity=0.594 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+. +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34567799999999999999999999999999999999999765 889999999999999999997 5889999999999
Q ss_pred EEe
Q 016463 113 SEV 115 (389)
Q Consensus 113 ~~a 115 (389)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=5.7e-18 Score=134.33 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.+|||+|||+++++++|.++|++|| .|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999999766 899999999999999999999999999999999999987
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 59
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=8.1e-17 Score=130.75 Aligned_cols=79 Identities=25% Similarity=0.525 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+ ++||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4567999999999999999999999999999999985 469999999999999999999999999999999999
Q ss_pred cccCCC
Q 016463 116 ATRGRK 121 (389)
Q Consensus 116 ~~~~~~ 121 (389)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=135.67 Aligned_cols=85 Identities=32% Similarity=0.649 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999998765 88999999999999999999999999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998764
No 61
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=143.93 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..++|||+|||+++++++|..+|..|| .|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5.7e-17 Score=127.58 Aligned_cols=79 Identities=25% Similarity=0.485 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+ .|+|..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999998755 88999999999999999999 8999999999999999876
Q ss_pred c
Q 016463 118 R 118 (389)
Q Consensus 118 ~ 118 (389)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=135.42 Aligned_cols=86 Identities=24% Similarity=0.531 Sum_probs=78.6
Q ss_pred ccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
......+.++|||+|||+.+++++|..+|++||.|..|.|+.+.. .++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344566789999999999999999999999999999999998854 4889999999999999999999999999999999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998764
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=133.31 Aligned_cols=85 Identities=31% Similarity=0.648 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3566799999999999999999999999999999999999766 8899999999999999999998 9999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9887654
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6.8e-18 Score=136.80 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceecc-EE
Q 016463 38 DESSVYVGGLPY------SANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RV 109 (389)
Q Consensus 38 ~~~~lfVgnLp~------~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-r~ 109 (389)
..++|||+|||+ .+++++|..+|++||.|..|.|+.+..+ +++|||||+|.+.++|+.|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 358999999999 9999999999999999999999999885 899999999999999999999999999999 99
Q ss_pred EEEEEeccc
Q 016463 110 VRVSEVATR 118 (389)
Q Consensus 110 l~V~~a~~~ 118 (389)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 66
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=5e-18 Score=158.10 Aligned_cols=81 Identities=17% Similarity=0.433 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..++|||+|||+++|+++|+++|.+|| .|..|.|+.++.+ +++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=134.68 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.+..+|||+|||+.+|+++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|..||. ++|..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 44689999999999999999999999999999999998878899999999999999999999 89999999999999875
Q ss_pred c
Q 016463 117 T 117 (389)
Q Consensus 117 ~ 117 (389)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=129.25 Aligned_cols=86 Identities=26% Similarity=0.500 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.||. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34566789999999999999999999999999999999999765 899999999999999999999 478999999999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876543
No 69
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=5.9e-17 Score=133.37 Aligned_cols=84 Identities=20% Similarity=0.458 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999998765 89999999999999999999976 5999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=134.02 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CceeccEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~V~ 113 (389)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|+..|+ +..|.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456799999999999999999999999999999999874 6899999999999999999886 478999999999
Q ss_pred EecccCCC
Q 016463 114 EVATRGRK 121 (389)
Q Consensus 114 ~a~~~~~~ 121 (389)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99776543
No 71
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.2e-17 Score=131.75 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.....++|||+|||+++++++|..+|.+||.|..|.|+. .+|||||+|.+.++|..|+..|+|..|+|+.|.|.+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 345578999999999999999999999999999999973 678999999999999999999999999999999999
Q ss_pred ecc
Q 016463 115 VAT 117 (389)
Q Consensus 115 a~~ 117 (389)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 72
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=133.87 Aligned_cols=83 Identities=27% Similarity=0.587 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+.++|||+|||+++++++|..+|..||.|..|.|+.+..+ .++|||||+|.+.++|+.||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3489999999999999999999999999999999999775 8999999999999999999997 9999999999999998
Q ss_pred ccCCC
Q 016463 117 TRGRK 121 (389)
Q Consensus 117 ~~~~~ 121 (389)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=126.57 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....++|||+|||+.+++++|+++|..| .|..|.|+.+..+.++|||||+|.+.++|+.|+. |+|..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 8999999999666899999999999999999999 9999999999999999
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7664
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.1e-17 Score=127.12 Aligned_cols=79 Identities=28% Similarity=0.589 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+++++++|..+|.+||.|..|.|+ +|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 4567999999999999999999999999999999996 579999999999999999999999999999999999
Q ss_pred cccCCC
Q 016463 116 ATRGRK 121 (389)
Q Consensus 116 ~~~~~~ 121 (389)
.+....
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3.2e-17 Score=139.24 Aligned_cols=87 Identities=34% Similarity=0.535 Sum_probs=80.2
Q ss_pred cCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+ ..+|||||+|.+.++|+.||..|+|..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334567899999999999999999999999999999999998776 8999999999999999999999999999999999
Q ss_pred EEEecccC
Q 016463 112 VSEVATRG 119 (389)
Q Consensus 112 V~~a~~~~ 119 (389)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99987654
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=132.80 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45677999999999999999999999999999999999998558999999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
|.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 977554
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=131.07 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++|||+|||+.+++++|+.+|.+||.|..+.++.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999988877777655 7899999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=129.34 Aligned_cols=82 Identities=29% Similarity=0.571 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|+.+|.+||.| .|+.+..+..+|||||+|.+.++|+.||..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999977 5666655588999999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 79
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=134.98 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+++++++|..+|..||.|..|.|+.+..+ .++|||||+|.+.++|+.|| .|+|..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999998876 88999999999999999999 8999999999999999976
Q ss_pred cC
Q 016463 118 RG 119 (389)
Q Consensus 118 ~~ 119 (389)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 80
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=130.58 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce--eccEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~--i~Gr~l~ 111 (389)
....|..+|||+|||+.+|+++|..+|++||.|..|.|+. .+|||||+|.+.++|..|+..|++.. |.|++|.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456789999999999999999999999999999999875 46899999999999999999999875 7899999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|++++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5e-17 Score=132.74 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=76.1
Q ss_pred cCCCCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 33 KMTIDDESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~------te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
.......++|||+|||+.+ ++++|..+|++||.|..|.|+ ...+.++|||||+|.+.++|..|+..|||..|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3344557899999999999 789999999999999999988 344588999999999999999999999999999
Q ss_pred cE-EEEEEEecccC
Q 016463 107 GR-VVRVSEVATRG 119 (389)
Q Consensus 107 Gr-~l~V~~a~~~~ 119 (389)
|+ +|.|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999987543
No 82
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.8e-17 Score=131.26 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....++|||+|||+.+|+++|+++|..||. ..|.|+.+..++++|||||+|.+.++|+.||. +++..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345689999999999999999999999995 59999999866899999999999999999995 7999999999999988
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=125.53 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|..+|++||.|..|.|+. +||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 456679999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ecccCCC
Q 016463 115 VATRGRK 121 (389)
Q Consensus 115 a~~~~~~ 121 (389)
+.+....
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876543
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=3.5e-17 Score=130.53 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
++.++|||+|||+.+++++|+.+|.+||.|..+.++.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999998888877666 78999999999999999999999999999999999987
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 85
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=128.94 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc--CCceeccEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l--~g~~i~Gr~l~V 112 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999988764 789999999999999999977 467899999999
Q ss_pred EEecccCCC
Q 016463 113 SEVATRGRK 121 (389)
Q Consensus 113 ~~a~~~~~~ 121 (389)
.|+......
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999866543
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.2e-17 Score=131.77 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc--eeccEEEEE
Q 016463 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~--~i~Gr~l~V 112 (389)
..+.++|||+|||+ .+|+++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..||..|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 45789999999999 9999999999999999999999864 479999999999999999998864 599999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 87
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=4.4e-17 Score=135.45 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEE-----EEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-----VRV 112 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~-----l~V 112 (389)
..++|||+|||+++++++|.++|.+||.|..|.|+.+ |||||+|.+.++|+.||..|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 566
Q ss_pred EEecc
Q 016463 113 SEVAT 117 (389)
Q Consensus 113 ~~a~~ 117 (389)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 55443
No 88
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.6e-16 Score=133.07 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+++++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+ .|+|..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 489999999999999999999999999999999998655 88999999999999999999 7999999999999999875
Q ss_pred cC
Q 016463 118 RG 119 (389)
Q Consensus 118 ~~ 119 (389)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-17 Score=128.99 Aligned_cols=80 Identities=26% Similarity=0.535 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+++++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356789999999999999999999999999999999998765 8899999999999999999999999999999998865
Q ss_pred e
Q 016463 115 V 115 (389)
Q Consensus 115 a 115 (389)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.1e-16 Score=126.40 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
....-|||+||++.+|+++|+++|.+||+|..++|+. ++|||||+|.+.++|..|+..||+..|.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3467899999999999999999999999999999976 68999999999999999999999999999999999984
No 91
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=126.20 Aligned_cols=79 Identities=32% Similarity=0.560 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~--G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
...+.++|||+|||+.+++++|+.+|.+| |.|..|.++ +|||||+|.+.++|+.|+..|+|..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 35567999999999999999999999999 999999874 579999999999999999999999999999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987554
No 92
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=129.74 Aligned_cols=81 Identities=28% Similarity=0.537 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....++|||+|||+.+++++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|+.|.|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 456789999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cccCCC
Q 016463 116 ATRGRK 121 (389)
Q Consensus 116 ~~~~~~ 121 (389)
.+....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 93
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=132.81 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I-~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+|+++|.++|..||.| ..|.|+.+..+.++|||||+|.+.++|+.||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 889999998558999999999999999999996 99999999999999
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=128.05 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec--cEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~--Gr~l~V~ 113 (389)
..+.++|||+|||+++++++|..+|++||.|..|.|+.+ +|||||+|.+.++|+.|+..|||..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 456689999999999999999999999999999998754 689999999999999999999999999 9999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 95
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=133.51 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=75.7
Q ss_pred ccCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC--ceeccEE
Q 016463 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRV 109 (389)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g--~~i~Gr~ 109 (389)
......+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 3445667899999999999999999999999999999999874 68999999999999999998874 6899999
Q ss_pred EEEEEecccCCC
Q 016463 110 VRVSEVATRGRK 121 (389)
Q Consensus 110 l~V~~a~~~~~~ 121 (389)
|.|.++.++...
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.7e-16 Score=138.35 Aligned_cols=85 Identities=36% Similarity=0.617 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455789999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987544
No 97
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=127.82 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|.++|..|+ .|.++.+..+ .++|||||+|.+.++|+.||..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 355679999999999999999999999874 6777777655 889999999999999999999999999999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987654
No 98
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=129.14 Aligned_cols=85 Identities=15% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEe-eCCCC-CCceEEEEEEcChHHHHHHHHhcC--CceeccEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIV-NDRST-RGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVV 110 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~v~-~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l 110 (389)
..+.++|||+|||+.+++++|..+|..||. |..|.|+ .+..+ .++|||||+|.+.++|..|+..|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 66665 789999999999999999999996 589999999
Q ss_pred EEEEecccCC
Q 016463 111 RVSEVATRGR 120 (389)
Q Consensus 111 ~V~~a~~~~~ 120 (389)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.3e-16 Score=127.12 Aligned_cols=78 Identities=23% Similarity=0.526 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
...++.++|||+|||+ ++++++|..+|++||.|..|.| .+|||||+|.+.++|..|+..|+|..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999998 9999999999999999999998 3689999999999999999999999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
+++.+.
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 100
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=130.10 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecccC
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (389)
++|||+|||+++++++|..+|++||.|..|.|+.+ ++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999887 78999999999999999999999999999999999998765
Q ss_pred C
Q 016463 120 R 120 (389)
Q Consensus 120 ~ 120 (389)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=132.61 Aligned_cols=83 Identities=23% Similarity=0.505 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC--CCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~--~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
......++|||+|||+++++++|..+|+.|| |..|.|+.+. .++++|||||+|.+.++|..|+ .|+|..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3356679999999999999999999999999 9999999987 3489999999999999999999 7999999999999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|.++.+.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.4e-17 Score=130.76 Aligned_cols=83 Identities=36% Similarity=0.747 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3579999999999999999999999999999999998755 789999999999999999999999999999999999997
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6543
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=133.61 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....++|||+|||+++|+++|.++|..||. |..|.|+.+..++++|||||+|.+.++|++||. |++..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345789999999999999999999999999 899999998888899999999999999999999 9999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-17 Score=138.27 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCc----eecc
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDG 107 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~----~i~G 107 (389)
...+.++|||+|||+++|+++|+++|.+||.|.. |.|+.++.+ .++|||||+|.+. +|..|+..|+|. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466789999999999999999999999999976 999999855 8999999999999 999999999999 9999
Q ss_pred EEEEEEEecccCC
Q 016463 108 RVVRVSEVATRGR 120 (389)
Q Consensus 108 r~l~V~~a~~~~~ 120 (389)
+.|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999976543
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.1e-16 Score=132.66 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++|||+|||+.+++++|+++|.+|| .|..|.|+.. .++|||||+|.+.++|+.||..|||..|+|+.|.|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44578999999999999999999999999 8999988532 4789999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=124.04 Aligned_cols=78 Identities=22% Similarity=0.487 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+. +||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 45678999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77644
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=130.12 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee--------cc
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--------DG 107 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i--------~G 107 (389)
..+.++|||+|||+.+++++|..+|..||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4567899999999999999999999999999999999998558899999999999999999999999999 57
Q ss_pred EEEEEEEeccc
Q 016463 108 RVVRVSEVATR 118 (389)
Q Consensus 108 r~l~V~~a~~~ 118 (389)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=128.47 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|.++|..||.|.. |.|+.+..++++|||||+|.+.++|+.||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 8888886668999999999999999999997 99999999999998
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.7e-17 Score=128.99 Aligned_cols=78 Identities=26% Similarity=0.572 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..|+..|+|..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 46789999999999 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.1e-17 Score=123.53 Aligned_cols=74 Identities=24% Similarity=0.535 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
+|||+|||+++++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+. |+|..|+|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998755 899999999999999999998 9999999999999875
No 111
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=134.46 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
...+.++|||+|||+.+++++|+ .+|++||.|..|.|.. .+.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 35567899999999999999865 6999999999987753 34789999999999999999999999999999999
Q ss_pred EEEEecccC
Q 016463 111 RVSEVATRG 119 (389)
Q Consensus 111 ~V~~a~~~~ 119 (389)
.|.|+....
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=126.79 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3556789999999999999999999999999999999753 68999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987554
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=2.1e-16 Score=129.94 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+++++++|..+|++||.|..|.|+ +|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 876543
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=130.34 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I----~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
..+.++|||+|||+.+++++|..+|.+||.| ..+.++ .+.++|||||+|.+.++|+.|+..|+|..|.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4567999999999999999999999999998 455554 347899999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 016463 112 VSEVATRGRK 121 (389)
Q Consensus 112 V~~a~~~~~~ 121 (389)
|.++.+....
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 115
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=6.6e-17 Score=138.32 Aligned_cols=87 Identities=36% Similarity=0.594 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.||..|+|..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999988765 89999999999999999999999999999999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.++.+...
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99986554
No 116
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=133.54 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999998665 889999999999999999999999999999999998
Q ss_pred Ee
Q 016463 114 EV 115 (389)
Q Consensus 114 ~a 115 (389)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=125.98 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC-ceeccEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG-RTIDGRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g-~~i~Gr~l~V~ 113 (389)
..+.++|||+|||+++++++|+.+|.+||. |..+.+. .+|||||+|.+.++|+.|+..||| ..|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 456789999999999999999999999999 5555553 478999999999999999999999 99999999999
Q ss_pred EecccCC
Q 016463 114 EVATRGR 120 (389)
Q Consensus 114 ~a~~~~~ 120 (389)
++.+...
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987544
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=121.93 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhc-CCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+. .+|||||+|.+.++|..|+..| +|..|.|++|.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45678999999999999999999999999999999986 4789999999999999999999 99999999999998
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 119
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.9e-17 Score=123.00 Aligned_cols=75 Identities=21% Similarity=0.534 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
++|||+|||+++++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..++ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998765 899999999999999999999998 9999999999986
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=128.77 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCc--eeccEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~--~i~Gr~l~V 112 (389)
...+..+|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++. .|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456789999999999999999999999999999998763 689999999999999999988764 599999999
Q ss_pred EEecccCC
Q 016463 113 SEVATRGR 120 (389)
Q Consensus 113 ~~a~~~~~ 120 (389)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976543
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3.2e-16 Score=129.49 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999999999999999999999999998753 45899999999999999999999999999999999999
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7654
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3.6e-16 Score=128.38 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
....++|||+|||+. +++++|..+|.+||.|..|.| .+|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999 999999999999999999998 568999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 875443
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.3e-16 Score=127.56 Aligned_cols=83 Identities=19% Similarity=0.415 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
...+.++|||+|||+.+++++|. .+|++||.|..|.|+. .+.++|||||+|.+.++|..|+..|+|..|.|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 34577999999999999999999 9999999999998863 23578999999999999999999999999999999
Q ss_pred EEEEecccC
Q 016463 111 RVSEVATRG 119 (389)
Q Consensus 111 ~V~~a~~~~ 119 (389)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997654
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=126.59 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....++|||+|||+.+++++|..+|.+||.|. +.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34568999999999999999999999999997 666653 57899999999999999999999999999999999999
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.8e-16 Score=136.07 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
..+.++|||+|||+++|+++|.++|+.||. |..|.|+.+..++++|||||+|.+.++|++||. |++..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 456789999999999999999999999999 889999999888899999999999999999999 9999999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.++.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988643
No 126
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.5e-17 Score=128.17 Aligned_cols=80 Identities=34% Similarity=0.676 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.+ |..|+..|+|..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999998775 88999999999999 99999999999999999999999775
Q ss_pred CC
Q 016463 119 GR 120 (389)
Q Consensus 119 ~~ 120 (389)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=124.16 Aligned_cols=73 Identities=26% Similarity=0.526 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccE-EEE
Q 016463 39 ESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVR 111 (389)
Q Consensus 39 ~~~lfVgnLp~~~------te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l~ 111 (389)
.++|||+|||+.+ ++++|..+|++||.|..|.|+ ...+.++|||||+|.+.++|..|+..|||..|+|+ +|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 779999999999999999987 33448899999999999999999999999999999 887
Q ss_pred E
Q 016463 112 V 112 (389)
Q Consensus 112 V 112 (389)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=130.69 Aligned_cols=78 Identities=33% Similarity=0.487 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
..+|||+|||+.+++++|.++|..| .|..|.|+.+..++++|||||+|.+.++|++|| .|++..|+|+.|.|..+...
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 899999999988889999999999999999999 59999999999999887653
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.8e-17 Score=135.10 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-CCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN-DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~-d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+|+++|..+|..||.|..+.++. +..+.++|||||+|.+.++|+.||. |+|..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45678999999999999999999999999998854444 4445889999999999999999999 999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+.+.
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 130
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=138.62 Aligned_cols=86 Identities=28% Similarity=0.439 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--------v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
..+.++|||+|||+.+++++|..+|.+||.|.. |.|+.+..+ .++|||||+|.+.++|+.|+..|+|..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 889888665 88999999999999999999999999999
Q ss_pred cEEEEEEEecccCCC
Q 016463 107 GRVVRVSEVATRGRK 121 (389)
Q Consensus 107 Gr~l~V~~a~~~~~~ 121 (389)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 131
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=131.32 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
.....++|||+|||+++|+++|..+|..||. |..|.|+.+..++++|||||+|.+.++|+.||. |++..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3466789999999999999999999999998 899999998888899999999999999999999 999999999999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998654
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=125.06 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+.+++++|..+|..||.|..+ ...+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988666 234478999999999999999999999999999999999998
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=130.07 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC--CceeccEEEE
Q 016463 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~ 111 (389)
...+.++|||+|||++ +++++|..+|.+||.|..|.|+. .+|||||+|.+.++|..|+..|+ +..|.|++|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999998 99999999999999999999974 57899999999999999999886 4569999999
Q ss_pred EEEecccCC
Q 016463 112 VSEVATRGR 120 (389)
Q Consensus 112 V~~a~~~~~ 120 (389)
|.++.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976544
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=120.47 Aligned_cols=79 Identities=19% Similarity=0.369 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|| ++++++|+.+|.+||.|..|.|. ..+|||||+|.+.++|..||..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999996 89999999999999999999985 3678999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 977654
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=9.1e-17 Score=138.42 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
.....++|||+|||+++|+++|+++|++|| |..|.|+.+..++++|||||+|.+.++|++|| .+++..|+|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 77999999987889999999999999999999 6899999999999998
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-17 Score=129.83 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+++++++|..+|..||.|.. .++.+..+ .++|||||+|.+.++|+.||. |+|..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999998877 45555444 789999999999999999999 999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 137
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=6.5e-16 Score=133.82 Aligned_cols=82 Identities=30% Similarity=0.535 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|+|..|.|++|.|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33566799999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred EecccC
Q 016463 114 EVATRG 119 (389)
Q Consensus 114 ~a~~~~ 119 (389)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 987653
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=6.6e-16 Score=124.89 Aligned_cols=82 Identities=29% Similarity=0.542 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|+.|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34589999999999999999999999999999999999855899999999999999999999 9999999999999997
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
+...
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6544
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=8.3e-16 Score=137.56 Aligned_cols=85 Identities=21% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+.+++++|.++|..||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999998558999999999999999999999999999999999999
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97653
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=127.55 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
..++|||+|||+.+++++|..+|++||.|..|.|+. .+|||||+|.+.++|+.|+..|||..|.|++|.|+|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357999999999999999999999999999998864 578999999999999999999999999999999999975
Q ss_pred c
Q 016463 118 R 118 (389)
Q Consensus 118 ~ 118 (389)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.8e-16 Score=119.73 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 41 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
+|||+|||+++++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999988765 889999999999999999999 5899999999999875
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.8e-15 Score=138.41 Aligned_cols=83 Identities=28% Similarity=0.431 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+++|+++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..||..|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 446689999999999999999999999999999999999876 8999999999999999999999999999999999998
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7543
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=126.05 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=73.5
Q ss_pred cCCCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee-----
Q 016463 33 KMTIDDESSVYV--GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI----- 105 (389)
Q Consensus 33 ~~~~~~~~~lfV--gnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i----- 105 (389)
.....+..+||| |||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 444567789999 88999999999999999999999998864 378999999999999999999999998
Q ss_pred ccEEEEEEEecccCC
Q 016463 106 DGRVVRVSEVATRGR 120 (389)
Q Consensus 106 ~Gr~l~V~~a~~~~~ 120 (389)
.|++|.|.++...+.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 799999999975543
No 144
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.2e-16 Score=130.46 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I----~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
..+.++|||+|||+++|+++|+++|++||.| ..|.|+.+..++++|||||+|.+.++|++||.. ++..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3457899999999999999999999999975 689999987668999999999999999999995 99999999999
Q ss_pred EEEecc
Q 016463 112 VSEVAT 117 (389)
Q Consensus 112 V~~a~~ 117 (389)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=131.27 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE------EEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV------KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v------~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (389)
..+.++|||+|||+.+|+++|..+|.+||.|..| .|.....+.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 5677999999999999999999999999998764 1222234578999999999999999999999999999999
Q ss_pred EEEEEecccCC
Q 016463 110 VRVSEVATRGR 120 (389)
Q Consensus 110 l~V~~a~~~~~ 120 (389)
|.|.++.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=118.05 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
....+|||+|||+++++++|..+|.+||.|..| +.+..+.. ||||+|.+.++|..|+. |+|..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV--FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC--EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc--EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 44444322 99999999999999999 99999999999999876
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
+..
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 147
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1.1e-15 Score=129.37 Aligned_cols=82 Identities=18% Similarity=0.332 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (389)
...+.++|||+|||+.+|+++|+++|+.| .|. .|.|+.++.++++|||||+|.+.++|++||. +++..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 577 8999998888899999999999999999999 5789999999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
..+.+.
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887643
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=4.1e-15 Score=131.07 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc--EEEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~ 114 (389)
....+|||+||++.+|+++|+.+|++||.|..|.|.... .+|||||+|.+.++|+.|+..|+|..|.| +.|+|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 344679999999999999999999999999999986542 57899999999999999999999999965 9999999
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98754
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=2.6e-15 Score=118.38 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
..++|||+|||+.+++++|+.+|.+| .|..|.|. .++|||||+|.+.++|+.|+..|+|..|+|++|.|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999885 4789999999999999999999999999999999999865
Q ss_pred c
Q 016463 118 R 118 (389)
Q Consensus 118 ~ 118 (389)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.9e-15 Score=118.06 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce--eccEEEE
Q 016463 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVR 111 (389)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~--i~Gr~l~ 111 (389)
....+.++|||+|||+++|+++|+.+|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 34567799999999999999999999999999999999875 78999999999999984 44544 5699999
Q ss_pred EEEecccC
Q 016463 112 VSEVATRG 119 (389)
Q Consensus 112 V~~a~~~~ 119 (389)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.9e-15 Score=127.01 Aligned_cols=82 Identities=28% Similarity=0.587 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+..+|||+|||+.+++++|..+|++||.|..+.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999998665 889999999999999999999999999999999999
Q ss_pred Eec
Q 016463 114 EVA 116 (389)
Q Consensus 114 ~a~ 116 (389)
||.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=5.2e-15 Score=128.74 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+.++|||+|||+++++++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5689999999999999999999999999999999988755 789999999999999999999999999999999999987
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=8.2e-15 Score=124.53 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceE-EEEEEcChHHHHHHHHhcCCceecc--EEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~-aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V 112 (389)
.+.-..|||+||++.+|+++|..+|++||.|..|.|+.. .+|| |||+|.+.++|+.|+..|||..|.| +.|+|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344568899999999999999999999999999988764 4678 9999999999999999999999988 99999
Q ss_pred EEecccC
Q 016463 113 SEVATRG 119 (389)
Q Consensus 113 ~~a~~~~ 119 (389)
+|+++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=9.2e-15 Score=126.69 Aligned_cols=81 Identities=28% Similarity=0.545 Sum_probs=75.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+.+++++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999998844 8899999999999999999999999999999999999875
Q ss_pred cC
Q 016463 118 RG 119 (389)
Q Consensus 118 ~~ 119 (389)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=119.22 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
...++|||+|||+++++++|..+|.+||.|..| .|+.+..+ |.|||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356899999999999999999999999999999 57776543 44999999999999999999999999999999999
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-14 Score=126.10 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=74.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecccC
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (389)
++|||+|||+.+|+++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999999888899999999999999999999999999999999999986554
No 157
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.7e-15 Score=117.27 Aligned_cols=78 Identities=28% Similarity=0.460 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45799999999999999999999999999999999865 789999999999999865432 455689999999987
Q ss_pred ccCC
Q 016463 117 TRGR 120 (389)
Q Consensus 117 ~~~~ 120 (389)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.2e-14 Score=131.75 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
...++|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999998755 88999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016463 116 ATRGRK 121 (389)
Q Consensus 116 ~~~~~~ 121 (389)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=8.6e-15 Score=133.94 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEeccc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (389)
..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|..||..|||..|+|++|.|.++.++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 468999999999999999999999999999999988544 7899999999999999999999999999999999999764
No 160
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.3e-15 Score=123.84 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcC----hHH----HHHHHH--hcCCce
Q 016463 40 SSVYVGGL----PYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGN----PRS----AVDAIN--DMNGRT 104 (389)
Q Consensus 40 ~~lfVgnL----p~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~----~~~----A~~Al~--~l~g~~ 104 (389)
+.|||+|| |+.|++..|..+|+.||+|..|.++.|+.| .++|||||+|.+ +++ |..|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999999999999998 999999999996 433 788888 789999
Q ss_pred eccEEEEEEEec
Q 016463 105 IDGRVVRVSEVA 116 (389)
Q Consensus 105 i~Gr~l~V~~a~ 116 (389)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=1.7e-14 Score=129.01 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 366799999999999999999999999999999999998744 8899999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=1.5e-14 Score=129.24 Aligned_cols=84 Identities=26% Similarity=0.597 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (389)
...+.++|||+|||+++|+++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3456789999999999999999999999999999999998766 7899999999999999999985 9999999999999
Q ss_pred EecccC
Q 016463 114 EVATRG 119 (389)
Q Consensus 114 ~a~~~~ 119 (389)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 986543
No 163
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.6e-14 Score=121.91 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceE-EEEEEcChHHHHHHHHhcCCceecc--EEEEEEEec
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEVA 116 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~-aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~a~ 116 (389)
..|||+||++.+++++|..+|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|++|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999998652 286 9999999999999999999999987 699999998
Q ss_pred ccC
Q 016463 117 TRG 119 (389)
Q Consensus 117 ~~~ 119 (389)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 164
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.8e-14 Score=125.92 Aligned_cols=79 Identities=25% Similarity=0.516 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
....+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999744 88999999999999999999999999999999999987
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=1.7e-14 Score=128.77 Aligned_cols=85 Identities=22% Similarity=0.479 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+.. +|..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 345689999999999999999999999999999999998755 8899999999999999999995 89999999999999
Q ss_pred ecccCCC
Q 016463 115 VATRGRK 121 (389)
Q Consensus 115 a~~~~~~ 121 (389)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9877654
No 166
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.1e-14 Score=113.76 Aligned_cols=72 Identities=25% Similarity=0.595 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i 105 (389)
.+.++|||+|||+++++++|..+|.+| | .|..+.++.+ +|||||+|.+.++|..|+ .|+|..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 356899999999999999999999999 8 8999998754 789999999999999999 8999999
Q ss_pred ccEEEEEEE
Q 016463 106 DGRVVRVSE 114 (389)
Q Consensus 106 ~Gr~l~V~~ 114 (389)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999973
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=6.5e-15 Score=137.69 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCccccCCcchhhhh------------------hhhhhhccCCCCCCcEEEEcCCCCCC---------CHH
Q 016463 2 VCREGGRQGVSTSIVVPIKARVIF------------------NLIEERVKMTIDDESSVYVGGLPYSA---------NED 54 (389)
Q Consensus 2 ~~~~~~r~~~s~~~~~p~~~~~~~------------------~~~~~~~~~~~~~~~~lfVgnLp~~~---------te~ 54 (389)
.|..|..|...+.+|++....... ..+.. ........++||||||+..+ +++
T Consensus 80 ~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g-~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe 158 (240)
T 3u1l_A 80 MCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGG-IGSFRKKNKTLYVGGIDGALNSKHLKPAQIES 158 (240)
T ss_dssp CCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC----------CCCCCEEEEECTTGGGTTCCCCHHHHHH
T ss_pred CCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccC-cCccccCCceeecCCCChhhhcccccccCcHH
Confidence 488999999998876543222100 00000 11124467899999999998 799
Q ss_pred HHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee------------ccEEEEEEEecccCC
Q 016463 55 SVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI------------DGRVVRVSEVATRGR 120 (389)
Q Consensus 55 dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i------------~Gr~l~V~~a~~~~~ 120 (389)
+|..+|++||.|..|.|+. .+|||||+|.+.++|+.|+.+|+|..| .|+.|.|.||...+.
T Consensus 159 ~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 159 RIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999999999999999985 578999999999999999999999999 899999999986543
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1.3e-14 Score=132.53 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLP-YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp-~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+.++|||+||| +.+++++|..+|++||.|..|.|+.+ .+|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 357899999999 79999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred ccc
Q 016463 116 ATR 118 (389)
Q Consensus 116 ~~~ 118 (389)
...
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.5e-14 Score=121.39 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|| ++++++|..+|++||.|..|.|. ..+|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 456789999996 69999999999999999999986 36789999999999999999999999999999999999
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=115.44 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=66.1
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 37 DDESS-VYVGGLPYSANEDS----VRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 37 ~~~~~-lfVgnLp~~~te~d----L~~~F~~~-G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
+|..+ |||+|||+.+++++ |..+|++| |.|..|. .|||||.|.+.++|..|++.|+|..|.|++|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 44555 99999999999987 56899999 5998881 1899999999999999999999999999999
Q ss_pred EEEEecccCC
Q 016463 111 RVSEVATRGR 120 (389)
Q Consensus 111 ~V~~a~~~~~ 120 (389)
+|.+|+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987644
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=2.8e-14 Score=124.78 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec---cEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~V 112 (389)
..+..+|||+|||+.+|+++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|..|+..|||..+. |++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34568999999999999999999999999999999999987788999999999999999999999998876 499999
Q ss_pred EEe
Q 016463 113 SEV 115 (389)
Q Consensus 113 ~~a 115 (389)
.||
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=1.1e-14 Score=126.68 Aligned_cols=80 Identities=16% Similarity=0.442 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+..+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+. ++|..|+|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3579999999999999999999999999999999998755 899999999999999999998 89999999999999997
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7.5e-14 Score=114.32 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEeeCCC--CCCceEEEEEEcChHHHHHHHHhcCCceeccEE
Q 016463 37 DDESSVYVGGLPY-----SANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (389)
Q Consensus 37 ~~~~~lfVgnLp~-----~~te~dL~~~F~~~G~I~~v~v~~d~~--~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (389)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++. ++++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 237899999999999999999998864 378999999999999999999999999999999
Q ss_pred EEEEEecc
Q 016463 110 VRVSEVAT 117 (389)
Q Consensus 110 l~V~~a~~ 117 (389)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=5.3e-14 Score=127.47 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+.+++++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|+.|+..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999877789999999999999999999865 5699999999998654
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=5.8e-14 Score=122.09 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceecc--EEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V 112 (389)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 356789999999999999999999999999999999998744 889999999999999999999999999988 99999
Q ss_pred EEe
Q 016463 113 SEV 115 (389)
Q Consensus 113 ~~a 115 (389)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=117.53 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC----CCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~----~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
....++|||+|||+.+++++|..+|++||.|. +.++.+..+ .++|||||+|.+.++|+.||..|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 878776653 789999999999999999999884 47777777
Q ss_pred EEEe
Q 016463 112 VSEV 115 (389)
Q Consensus 112 V~~a 115 (389)
|..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7644
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=5.1e-14 Score=127.61 Aligned_cols=80 Identities=30% Similarity=0.562 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+++|+++|.++|..||.|..|.|+.+..+ ..+|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 479999999999999999999999999999999988755 8899999999999999999999999999999999987654
Q ss_pred c
Q 016463 118 R 118 (389)
Q Consensus 118 ~ 118 (389)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=6.9e-14 Score=122.25 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCceec---cEEEE
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVR 111 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~ 111 (389)
+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5689999999999999999999999999999999998877 68999999999999999999999998876 67888
Q ss_pred EEEecccC
Q 016463 112 VSEVATRG 119 (389)
Q Consensus 112 V~~a~~~~ 119 (389)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776543
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=8.9e-14 Score=120.42 Aligned_cols=79 Identities=27% Similarity=0.564 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEE--EEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--VRVS 113 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~--l~V~ 113 (389)
.+..+|||+|||+.+++++|..+|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35689999999999999999999999999999999998755 78999999999999999999999999999975 8887
Q ss_pred Ee
Q 016463 114 EV 115 (389)
Q Consensus 114 ~a 115 (389)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=8.4e-14 Score=122.34 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
.+.++|||+|||+.+++++|..+|++||.|..+ ...+.++|||||+|.+.++|..|+..|+|..|+|+.|.|.|+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999988665 4444789999999999999999999999999999999999997
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.4e-13 Score=130.42 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
...+.++|||+|||+.+++++|+ .+|.+||.|..|.|+. .+.++|||||+|.+.++|..|+..|+|..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 45678999999999999999966 8999999999998876 44689999999999999999999999999999999
Q ss_pred EEEEecccC
Q 016463 111 RVSEVATRG 119 (389)
Q Consensus 111 ~V~~a~~~~ 119 (389)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999996544
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=2.5e-13 Score=128.70 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~~ 114 (389)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|..|+..|||..|. |+.|.|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 4467899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=8.8e-14 Score=128.57 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+.++|||+|||+ .+++++|..+|+.||.|..|.|+.+. +|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 46779999999999 99999999999999999999998874 78999999999999999999999999999999999
Q ss_pred eccc
Q 016463 115 VATR 118 (389)
Q Consensus 115 a~~~ 118 (389)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8654
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.46 E-value=9.8e-14 Score=120.66 Aligned_cols=79 Identities=32% Similarity=0.725 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (389)
+.++|||+|||+++|+++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4589999999999999999999999999999999998765 8999999999999999999994 678999999998875
Q ss_pred cc
Q 016463 117 TR 118 (389)
Q Consensus 117 ~~ 118 (389)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=1.5e-13 Score=130.94 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCC--CCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~--~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
...+.++|||+|||+. +++++|..+|++||.|..|.|+.+.. +.++|||||+|.+.++|..|+ .|||..|+|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999887 689999999999999999999 9999999999999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|.|+.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999765
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.45 E-value=3.3e-13 Score=128.06 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 36 IDDESSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~-te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
..+..+|||+|||+.+ ++++|..+|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|+|++|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999995 999999999999999999999998778999999999999999999999999999999999999
Q ss_pred ecccCC
Q 016463 115 VATRGR 120 (389)
Q Consensus 115 a~~~~~ 120 (389)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 976543
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.6e-13 Score=109.44 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce
Q 016463 36 IDDESSVYVGGLPYSAN-----------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~t-----------e~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
..+..+|+|.||..... +++|..+|++||.|..|.| .+. .++|||||+|.+.++|+.|+..|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678999999954432 5799999999999999966 443 378999999999999999999999999
Q ss_pred eccEEEEEEEecccCC
Q 016463 105 IDGRVVRVSEVATRGR 120 (389)
Q Consensus 105 i~Gr~l~V~~a~~~~~ 120 (389)
|+|++|.|.++.+...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999876543
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=9.6e-14 Score=113.42 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=65.1
Q ss_pred EEcCCCCCCCHHHHHHHh------------hccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEE
Q 016463 43 YVGGLPYSANEDSVRKVF------------DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 43 fVgnLp~~~te~dL~~~F------------~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
++.|||+.+++++|.++| ++||.|..|.|+.+..++++|||||+|.+.++|.+|+..|||..|+|++|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367788888888777666 99999999999988777899999999999999999999999999999999
Q ss_pred EEEEe
Q 016463 111 RVSEV 115 (389)
Q Consensus 111 ~V~~a 115 (389)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.41 E-value=1e-12 Score=124.68 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~-~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
.+.++|||+|||+.+++++|..+|..||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999988755 89999999999999999999999999999999999998
Q ss_pred cccC
Q 016463 116 ATRG 119 (389)
Q Consensus 116 ~~~~ 119 (389)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=122.46 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=71.9
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecc
Q 016463 39 ESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 39 ~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (389)
.++|||+|||+ .+++++|..+|+.||.|..|.|+.+. +|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 58999999999 99999999999999999999998764 78999999999999999999999999999999999875
Q ss_pred cC
Q 016463 118 RG 119 (389)
Q Consensus 118 ~~ 119 (389)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=5e-13 Score=126.00 Aligned_cols=77 Identities=22% Similarity=0.487 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
..+.++|||+|||+++|+++|..+|+.||.|..|.|.. .+|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45668999999999999999999999999999999965 4689999999999999999999999999999999998
Q ss_pred cc
Q 016463 116 AT 117 (389)
Q Consensus 116 ~~ 117 (389)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=3.3e-13 Score=121.15 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (389)
..+.++|||+|||+.+++++|.++|..|| .|..|.|+.+ .+|||||+|.+.++|..|+..|+|..|+ |+.|.|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 35689999999999999999999999999 9999999664 4789999999999999999999999999 9999999
Q ss_pred Eeccc
Q 016463 114 EVATR 118 (389)
Q Consensus 114 ~a~~~ 118 (389)
|+.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=1.1e-13 Score=121.56 Aligned_cols=84 Identities=13% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
...+.++|||+|||+++++++|..+|..||.|..+.|.....+.++|||||+|.+.++|..|+. |+|..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3456799999999999999999999999997765333332334789999999999999999995 999999999999999
Q ss_pred ecccC
Q 016463 115 VATRG 119 (389)
Q Consensus 115 a~~~~ 119 (389)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87643
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.39 E-value=6.9e-13 Score=122.53 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec-cEEEEEE
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (389)
..+.++|||+|||+.+++++|.++|.+|| .|..|.|+.. .+|||||+|.+.++|..|+..|+|..|+ |+.|.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 45679999999999999999999999999 9999999653 4689999999999999999999999999 9999999
Q ss_pred Eeccc
Q 016463 114 EVATR 118 (389)
Q Consensus 114 ~a~~~ 118 (389)
|+.++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=4.9e-13 Score=122.14 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe--EEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccE----E
Q 016463 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV--VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR----V 109 (389)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I--~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr----~ 109 (389)
..+..+|||+|||+.+|+++|.++|++||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 4567899999999999999999999999999 899988775 44569999999999999999999999999887 6
Q ss_pred EEEEEe
Q 016463 110 VRVSEV 115 (389)
Q Consensus 110 l~V~~a 115 (389)
+.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.2e-12 Score=107.05 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCce
Q 016463 38 DESSVYVGGL--PYSAN--------EDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 38 ~~~~lfVgnL--p~~~t--------e~dL~~~F~~~G~I~~v~v~~d~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
|...|.|.|+ |..+. +++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888887 33332 3689999999999999999988754 578999999999999999999999999
Q ss_pred eccEEEEEEEecc
Q 016463 105 IDGRVVRVSEVAT 117 (389)
Q Consensus 105 i~Gr~l~V~~a~~ 117 (389)
|+|+.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=9.6e-13 Score=125.32 Aligned_cols=84 Identities=12% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEe
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (389)
...++|||+|||+.+++++|..+|..|| .|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999 999999998877778999999999999999999999999999999999998
Q ss_pred cccCC
Q 016463 116 ATRGR 120 (389)
Q Consensus 116 ~~~~~ 120 (389)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.9e-12 Score=122.06 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC-Cceec---cEEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN-GRTID---GRVVRV 112 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~-g~~i~---Gr~l~V 112 (389)
.+..+|||+|||+.+|+++|..+|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+ +..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45689999999999999999999999999999999999766899999999999999999999995 55554 999999
Q ss_pred EEeccc
Q 016463 113 SEVATR 118 (389)
Q Consensus 113 ~~a~~~ 118 (389)
.++.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.35 E-value=2.4e-12 Score=112.37 Aligned_cols=75 Identities=23% Similarity=0.531 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
+.++|||+|||+.+|+++|.++|++| | .|..+.+.. .+|||||+|.+.++|..|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 777777754 4789999999999999999 79999999
Q ss_pred cEEEEEEEeccc
Q 016463 107 GRVVRVSEVATR 118 (389)
Q Consensus 107 Gr~l~V~~a~~~ 118 (389)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987543
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=2.6e-12 Score=107.41 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCC--C---CCHHHHHHHhhccCCeEEEEEeeCCC-----CCCceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 38 DESSVYVGGLPY--S---ANEDSVRKVFDKYGSVVAVKIVNDRS-----TRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 38 ~~~~lfVgnLp~--~---~te~dL~~~F~~~G~I~~v~v~~d~~-----~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
+..+|+|.|+-. + -.+++|+++|++||.|..|.|+.+.. ++++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 2 23688999999999999999998754 2578999999999999999999999999999
Q ss_pred EEEEEEEecc
Q 016463 108 RVVRVSEVAT 117 (389)
Q Consensus 108 r~l~V~~a~~ 117 (389)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.34 E-value=2.6e-12 Score=114.67 Aligned_cols=75 Identities=23% Similarity=0.516 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
..++|||+|||+.+++++|.++|..| | .|..+.+.. .+|||||+|.+.++|..|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 666666643 5789999999999999999 79999999
Q ss_pred cEEEEEEEeccc
Q 016463 107 GRVVRVSEVATR 118 (389)
Q Consensus 107 Gr~l~V~~a~~~ 118 (389)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999987654
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.8e-12 Score=100.84 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEEecccCC
Q 016463 49 YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120 (389)
Q Consensus 49 ~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~~ 120 (389)
..+++++|+.+|++||.|..|.|+. .++|||||+|.+.++|+.||..+++ +.|++|.|.|+.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 5689999999999999999999983 5789999999999999999997554 6899999999876654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=9.3e-12 Score=122.16 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=68.0
Q ss_pred cCCCCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec---c
Q 016463 33 KMTIDDESSVYVGG--LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---G 107 (389)
Q Consensus 33 ~~~~~~~~~lfVgn--Lp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~---G 107 (389)
.....+..+||||| |++.+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|+..|||..+. |
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 34467788999998 578999999999999999999987754 5789999999999999999999999883 4
Q ss_pred E--EEEEEEec
Q 016463 108 R--VVRVSEVA 116 (389)
Q Consensus 108 r--~l~V~~a~ 116 (389)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 67888773
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=5.9e-11 Score=98.52 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceec
Q 016463 37 DDESSVYVGGLPYSA----------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~----------te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (389)
.+..+|.+.|+-... .+++|+++|++||.|..|.|+.+. .+|||||+|.+.++|.+|+..|||..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 355677777773221 235789999999999999986552 5899999999999999999999999999
Q ss_pred cEEEEEEEecc
Q 016463 107 GRVVRVSEVAT 117 (389)
Q Consensus 107 Gr~l~V~~a~~ 117 (389)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.8e-10 Score=94.40 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=70.4
Q ss_pred cCCCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcC-hHHHHHHHHhcC--CceeccE
Q 016463 33 KMTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAINDMN--GRTIDGR 108 (389)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~-~~~A~~Al~~l~--g~~i~Gr 108 (389)
+....+++.|||+||++. ++.++|+++|+.||.|..|.|+.+.. .|||.|.+ ..+|..|+..|+ +..|.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 345678999999999999 99999999999999999999988754 69999999 899999999995 7889999
Q ss_pred EEEEEEec
Q 016463 109 VVRVSEVA 116 (389)
Q Consensus 109 ~l~V~~a~ 116 (389)
.+.+++..
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 99988754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=4.5e-10 Score=88.79 Aligned_cols=74 Identities=22% Similarity=0.365 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc
Q 016463 36 IDDESSVYVGGLPY----SANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (389)
Q Consensus 36 ~~~~~~lfVgnLp~----~~te----~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (389)
-+|..||+|.-++. +... .+|...|.+||.|..++|+.+ .+||+|.+.++|.+||. |+|..|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 35677888877662 3333 568899999999999999886 49999999999999999 99999999
Q ss_pred EEEEEEEecc
Q 016463 108 RVVRVSEVAT 117 (389)
Q Consensus 108 r~l~V~~a~~ 117 (389)
+.|+|.++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999865
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=2.4e-08 Score=91.40 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCC-----CCCCHHHHHHHhhccCCeEEEEEeeCCCC-----CCceEEEEEEcChHHHHHHHHhcCCcee
Q 016463 36 IDDESSVYVGGLP-----YSANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (389)
Q Consensus 36 ~~~~~~lfVgnLp-----~~~te~dL~~~F~~~G~I~~v~v~~d~~~-----~~kG~aFVeF~~~~~A~~Al~~l~g~~i 105 (389)
......+.+.++- ..-.+++|...|++||.|..|.|+.+..+ +++|++||+|.+.++|.+|+..|+|..|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3344455554441 22345789999999999999999865433 7899999999999999999999999999
Q ss_pred ccEEEEEEEecc
Q 016463 106 DGRVVRVSEVAT 117 (389)
Q Consensus 106 ~Gr~l~V~~a~~ 117 (389)
+|+.|.|.++..
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999998753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=7.6e-09 Score=82.20 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCC-----C-CH---HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCcee
Q 016463 35 TIDDESSVYVGGLPYS-----A-NE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~-----~-te---~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i 105 (389)
.-+|..||+|.-++.. + .+ .+|.+.|..||.|..++|+.+ -+||+|.+.++|.+||. |+|..|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3567789999887643 2 22 458899999999999999887 39999999999999999 999999
Q ss_pred ccEEEEEEEec
Q 016463 106 DGRVVRVSEVA 116 (389)
Q Consensus 106 ~Gr~l~V~~a~ 116 (389)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998743
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.1e-05 Score=65.51 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKY-----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~-----G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+...+|-+-+||..++..-|+.++..| |.|..|.+..+.. -|+|+|.+...|-+|.-+|+|..|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 446888888999999999999999999 9999999988744 699999999999999999999999999999
Q ss_pred EEE
Q 016463 112 VSE 114 (389)
Q Consensus 112 V~~ 114 (389)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00031 Score=56.54 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 37 DDESSVYVGGLPYSA-NE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~-te----~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
+-+++|+|.||+..+ +. +.++.+|..|+++....+... -.=..|.|.++++|.+|-..|++..++|..|+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 346899999998865 21 567999999999888766553 22578999999999999999999999999999
Q ss_pred EEEeccc
Q 016463 112 VSEVATR 118 (389)
Q Consensus 112 V~~a~~~ 118 (389)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.00082 Score=55.47 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceecc-EEEEEE
Q 016463 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RVVRVS 113 (389)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-r~l~V~ 113 (389)
.....+-|.|-++|+.. ...|..+|.+||.|....... ...+..|.|.+..+|++||. .||..|+| -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 34456888899999885 566788899999999887621 33599999999999999999 59999985 566666
Q ss_pred Ee
Q 016463 114 EV 115 (389)
Q Consensus 114 ~a 115 (389)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.89 E-value=0.0024 Score=50.70 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~ 101 (389)
....++| ++|..+...||..+|+.||.| .|.++.| ..|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3456666 999999999999999999954 5666665 379999999999999999663
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0017 Score=51.68 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~ 101 (389)
...++| ++|..+...||..+|+.|| -..|.++.| ..|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999 446777765 379999999999999999764
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.012 Score=47.25 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEE
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDK-----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~-----~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (389)
.-..+|.|.|||+.+.++.|.-+|+. -|.|..|.... +-|+|+|.+...|+..|.. ..+.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 34679999999999999999999987 25888887743 4799999999999999883 47889999999
Q ss_pred EEEe
Q 016463 112 VSEV 115 (389)
Q Consensus 112 V~~a 115 (389)
|.-.
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8643
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.60 E-value=0.01 Score=46.60 Aligned_cols=76 Identities=11% Similarity=0.141 Sum_probs=60.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCceecc-----EEEE
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-----r~l~ 111 (389)
++|.|.+||+.+|++++.+.++.+..+....++..... ....-|||.|.+.+++......++|+.+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57889999999999999999999988877777665433 344679999999999999999999998742 2345
Q ss_pred EEEe
Q 016463 112 VSEV 115 (389)
Q Consensus 112 V~~a 115 (389)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.74 E-value=0.015 Score=48.61 Aligned_cols=77 Identities=26% Similarity=0.474 Sum_probs=54.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEee------------CCCC--CCceEEEEEEcChHHHHHHHHhcCC
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVN------------DRST--RGKCYGFVTFGNPRSAVDAINDMNG 102 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~v~~------------d~~~--~~kG~aFVeF~~~~~A~~Al~~l~g 102 (389)
....|.|-++|+..+. .+..+|++||.|.. +.+.. .+.. ....+..|+|.+..+|..||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3456777799877654 45677999999876 22111 0000 024578999999999999999 699
Q ss_pred ceeccEEEEEEEec
Q 016463 103 RTIDGRVVRVSEVA 116 (389)
Q Consensus 103 ~~i~Gr~l~V~~a~ 116 (389)
..|+|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887654
No 217
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.81 E-value=0.088 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=10.9
Q ss_pred EcChHHHHHHHHhcCCceeccEEE
Q 016463 87 FGNPRSAVDAINDMNGRTIDGRVV 110 (389)
Q Consensus 87 F~~~~~A~~Al~~l~g~~i~Gr~l 110 (389)
|..-.....|..+|. .|+|..|
T Consensus 148 FV~F~~~e~A~~Ai~--~lng~~i 169 (437)
T 3pgw_S 148 FIEYEHERDMHSAYK--HADGKKI 169 (437)
T ss_pred EEeeccHHHHHHHHH--HcCCCEE
Confidence 344445555555543 3455544
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.60 E-value=0.02 Score=57.89 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=42.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHh
Q 016463 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (389)
Q Consensus 40 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~ 99 (389)
++|||. .|..+++.+|.++|++||.|..+.+..+.+ .||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS----EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC----eEEEEEeCCHHHHHHHHhc
Confidence 789997 799999999999999999999998876533 6999999999999987764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.16 E-value=0.037 Score=46.87 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce
Q 016463 68 AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 68 ~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
.+.|+.+.. .++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 356666644 589999999999999999998887643
No 220
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.97 E-value=1.2 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
+..+..-+.+..++...+...+..+.++..|++|++.||+.+..+
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777778888888999999999999998888765
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.78 E-value=0.066 Score=42.44 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---CCceEEEEEEcChHHHHHHHHhcCCceecc-----EEE
Q 016463 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVV 110 (389)
Q Consensus 39 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~---~~kG~aFVeF~~~~~A~~Al~~l~g~~i~G-----r~l 110 (389)
.-+|.|..||+.+|++++.+.++.+-.+....++....+ ....-|||.|.+.+++......++|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457889999999999998887776545433333322222 123568999999999999999999998742 245
Q ss_pred EEEEe
Q 016463 111 RVSEV 115 (389)
Q Consensus 111 ~V~~a 115 (389)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.31 E-value=0.025 Score=47.67 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=36.3
Q ss_pred CCceEEEEEEcChHHHHHHHHhc-CCceeccEEEEEEEecc
Q 016463 78 RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVAT 117 (389)
Q Consensus 78 ~~kG~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~V~~a~~ 117 (389)
..+|+++|+|.+.++|++|+..| +|..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 68899999999999999999999 9999999 999998754
No 223
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.34 E-value=3.8 Score=32.30 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
+..+..-+.+..++...+...+..+..+..|++|++.||+.+..+
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666677777777777777777777766543
No 224
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=90.19 E-value=0.49 Score=28.56 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
||.|||++-+.+.-+.+||++.-.||+-.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999987765
No 225
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.47 E-value=6.9 Score=43.58 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALIN 323 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~ 323 (389)
+.+|+++...|+.++..
T Consensus 986 v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 226
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.08 E-value=9.7 Score=30.66 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ----KQLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
.+..|+=+.+|.+|+...+..|.+|....+-.++=+ .+|.+|-..--+|...-.+|.-.+.-|
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 344455556666777777776666666655555443 455666666666665555555554444
No 227
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.97 E-value=2.1 Score=43.61 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcC
Q 016463 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (389)
Q Consensus 38 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~ 101 (389)
.+..++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 34566666 89899999999999999954 5555443 379999999999999999885
No 228
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.08 E-value=20 Score=30.38 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
+.++..|+.+...|+.++....|+..-=++.+.-|+-+|..+. ++|+.+++|=+.||+-.|.
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE---~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ---QKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555566666666666554 4555666666667776664
No 229
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.79 E-value=24 Score=34.74 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDL 310 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 310 (389)
.+++.++..+.+-++|+.+.+.++..-+.+++.
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555556655555555444444333
No 230
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=78.84 E-value=5.8 Score=30.13 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
.+||++.-++++....||..+++|+.|..-
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899999999999999888765
No 231
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=78.84 E-value=22 Score=31.16 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQL--------VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (389)
....+..|+..+.+..+|......++.-... ...++.+..+|+..-.....++..|+..|..||+-|-.+.+
T Consensus 37 l~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~~i~~rl~~l~~~~~~L~~~a~~R~~~L~~L~~f~~~~~~ 116 (210)
T 3pdy_A 37 LPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATK 116 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666777777776666555443322 12478888899999999999999999888888887777777
Q ss_pred HHHHHHHHHHHH
Q 016463 348 YAERLKSCEREF 359 (389)
Q Consensus 348 ~~~~~~~~~~~~ 359 (389)
+..=|...|..+
T Consensus 117 ~~~Wl~eke~~~ 128 (210)
T 3pdy_A 117 ELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555433
No 232
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=78.31 E-value=6.9 Score=29.70 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.+||++..++++....||..+.+|+.|+.-+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998754
No 233
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.99 E-value=19 Score=26.95 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
...+..++...+...+..+..+..|++|++.||+.+..
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555443
No 234
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.53 E-value=34 Score=29.44 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
++++.+.|.--+...+..+.|||.+...|+...
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSK 64 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555554443
No 235
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.22 E-value=27 Score=28.07 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYA 349 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (389)
..|..|++.|+|.++..
T Consensus 59 ~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 59 ILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777778887776643
No 236
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=76.78 E-value=4.9 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 016463 332 QKQLTKLYKCFIQVNE--YAERLKSCEREFQSI 362 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 362 (389)
...|..|.++|..|++ |.+||-..+++|+-|
T Consensus 12 ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999987 899999999999865
No 237
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=76.47 E-value=5.4 Score=29.17 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCceeccEEEEEEE
Q 016463 41 SVYVG-GLPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (389)
Q Consensus 41 ~lfVg-nLp~~~te~dL~~~F~~~G-----~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (389)
+|||. +--..+...+|..++..-+ .|-.|.|..+ |.||+... ..|..++..|.+..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 45663 2234567777877776544 4556777443 89998874 567888899999999999999886
Q ss_pred ec
Q 016463 115 VA 116 (389)
Q Consensus 115 a~ 116 (389)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 238
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=76.13 E-value=2.7 Score=26.57 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
.|||+.+-|-.+..-+||+.+.||+.|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 589999999999999999999999854
No 239
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.06 E-value=49 Score=33.13 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEIS 294 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (389)
.++.+|+..+..=.+|+
T Consensus 97 ~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHh
Confidence 34444544444444443
No 240
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.58 E-value=21 Score=36.15 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016463 349 AERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~ 369 (389)
-+.|...=|.|.+=|++.|..
T Consensus 140 Ledq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444445554443
No 241
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=74.01 E-value=46 Score=29.21 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINA----KKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
|+..|+..++.+.+|+.+...|+.++... ....++.-.++++|++-+.+++..++.|+..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777888888999888885555443 3333344467888888888888777766543
No 242
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.40 E-value=36 Score=34.47 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 016463 309 DLQKRSKKLEEALINAKKLSSHRQKQLTK 337 (389)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 337 (389)
.++.+.++++..+...++-....+.++.+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 33344444444444433333333333333
No 243
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=72.00 E-value=26 Score=27.65 Aligned_cols=37 Identities=3% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
.+-.||..|++.+|+.+....+++.+..-.-.++...
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~ 63 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFERE 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988876654444333
No 244
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.51 E-value=17 Score=29.82 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS----SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+.+|+.|.-.+...+.++..|.+....||..+..+.--- ..-|..|..|-..+.+++....+. -+|.|.|+|.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q---l~EYq~Ll~v 113 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ---NQEYKILLDV 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344444444444444444455555555555444333211 112334455555555555444332 3445555554
No 245
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.48 E-value=23 Score=28.86 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS----SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+.+|+.|.-.+...+.++..|.+....||..+..+.--- ..-|..|..|-..+.+++....+. -+|.|.|+|.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q---l~EYq~Llnv 111 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL---LREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHH
Confidence 344444444444455555555555555555554443211 122344555555555555544433 3455566654
No 246
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.93 E-value=9.8 Score=29.75 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHH
Q 016463 302 VKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---KQLTKLYKCFI 343 (389)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~ 343 (389)
+-+.++++|.+++.+||.....++.|...=. ..|....+.||
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~yL 95 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQFL 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788899999999999988888855332 45555566664
No 247
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.95 E-value=63 Score=31.75 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEE---RVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 317 (389)
+.+..+.++|..||. +++.+..++.+|.+..|.+
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888874 5555555555555555544
No 248
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.55 E-value=13 Score=36.61 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
+++.+++++++.++...+|+.+.++++..+...+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566655555555444443
No 249
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=68.72 E-value=11 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
.+||++.-++++....||..+.+|+.|+.-
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777654
No 250
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.42 E-value=53 Score=27.70 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 275 QVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (389)
-|...+.+.+....|+.++.+++.++...+..+.+-.+-.+.|-+++++. |.++.-|..-+-.|+..|..|
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL-------qlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG-------TIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777776666555555444444444444444444332 233444444445555555443
No 251
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.40 E-value=62 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
.....+..++..++..++.....+.+++.....++..
T Consensus 20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 56 (284)
T 1c1g_A 20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544444444444444444444433
No 252
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.29 E-value=12 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
+..+.-+++.-++.+.+||++.+.||..
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677778889999998888764
No 253
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.29 E-value=63 Score=28.08 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+..++..++..++..+..+.++......+
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333
No 254
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.03 E-value=31 Score=25.96 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
-++.+|+....+..+++.+.+..-.-+..+.|.+++++.|
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766666676666654444444444444444444
No 255
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=65.27 E-value=20 Score=30.15 Aligned_cols=52 Identities=8% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCcccccCCCCCCC
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES--DIPDDVCVKDGGPRTN 386 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 386 (389)
.|.+|+..+ +.+..-..++.+|++|+.|++.+-.-| -|.+...+.+|+|-.-
T Consensus 74 el~~l~~~l-~~np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~i~v~tg~p~~~ 127 (151)
T 2pih_A 74 KIDALQEEL-EEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLK 127 (151)
T ss_dssp HHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccc
Confidence 334444333 334455667788888888776543221 2223345556665443
No 256
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.12 E-value=21 Score=23.40 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
++.||.+..+.+...+||..+...|+.+-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666666677777777777777755543
No 257
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=64.79 E-value=28 Score=30.61 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016463 335 LTKLYKCF 342 (389)
Q Consensus 335 ~~~~~~~~ 342 (389)
++.|+..|
T Consensus 102 ~~~L~~~~ 109 (192)
T 2p22_C 102 ARILESKY 109 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 258
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=64.12 E-value=43 Score=25.06 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+.+..++..|.+...+++...+...||-.=.+||++ .|++|..-=..|....+.|+.-++||..+
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~--------------mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEE--------------MVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999988888888888888875 46677777778888888888888888654
No 259
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.80 E-value=1.1e+02 Score=30.48 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVK 303 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (389)
+.++.+++.|.+|+..+++-
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 44555666666666444433
No 260
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.77 E-value=14 Score=27.34 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKK 316 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (389)
..-|..++.++.+++.++.+|+++.-|
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555555555555555554433
No 261
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=63.75 E-value=42 Score=25.71 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
..+..++..+++-+....++..+...++.....+.+|-
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~ 70 (119)
T 3uun_A 33 NDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLI 70 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455556666666667777777777777777777763
No 262
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=63.29 E-value=6.1 Score=29.78 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
.+||++.-+.++....||..+..|+.|++-+..-+
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887777665443
No 263
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=63.27 E-value=48 Score=32.97 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
.-..+..++.+..+..+|..+.+.++.-.....+ +.+...|+..-.....++..|+..|..||+-|-.+.++..=|+..
T Consensus 34 L~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~~-~~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EK 112 (450)
T 3r6n_A 34 LASVEQHINSHRGIHNSIGDYRWQLDKIKADLRE-KSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDC 112 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777788888887777666554432111 124556777777777788889888888888777776666555555
Q ss_pred HH
Q 016463 356 ER 357 (389)
Q Consensus 356 ~~ 357 (389)
|+
T Consensus 113 e~ 114 (450)
T 3r6n_A 113 EE 114 (450)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 264
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.24 E-value=21 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
.++..|+.++++.+....+|..+...|+.+....+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666655554443
No 265
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=62.17 E-value=44 Score=32.54 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
...++.++..+...+..|+.++..|++..+....-......+-..+ +.--|+.+..+|+-+----.-++.+ +.||.+
T Consensus 311 L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~q-~~~~~~ 387 (406)
T 4dyl_A 311 LTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLG--KRQVLQEALQGLQVALCSQAKLQAQ-QELLQT 387 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHh--HHhhHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 3456666667777777777777777776665532111111111111 2223445555554321111111111 457899
Q ss_pred HhhhcCCCCc
Q 016463 366 AMTESDIPDD 375 (389)
Q Consensus 366 ~~~~~~~~~~ 375 (389)
+|.|+|+.|-
T Consensus 388 ~~~~~~~~~~ 397 (406)
T 4dyl_A 388 KLEHLGPGEP 397 (406)
T ss_dssp HHHTTTTSCC
T ss_pred HHHhcCCCCC
Confidence 9999887443
No 266
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.96 E-value=42 Score=26.99 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS-CEREFQSI 362 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 362 (389)
.+..++..+...++.-+....+...+.+.+|..+...+|.--.=-+.-..|....-.|++.-+-||. .|+||..|
T Consensus 38 ~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444444444445566778777777776554444455577777777777777754 46666654
No 267
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=59.58 E-value=30 Score=26.35 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 305 QLVLDLQKRSKKLEEALINAK-KLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
..+++|+.+..+|+.++..+. +|. ....-.-+.+..-.||+|||.=-.+
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~--~~~~~~~~~~hI~~Lh~YNeiKD~g 57 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLK--NRDAKQTVQKHIDLLHTYNEIRDIA 57 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555555544443332 232 1224445677788889998854443
No 268
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.34 E-value=81 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ 350 (389)
..|+||++....|-+.-.
T Consensus 98 Rsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444333
No 269
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.88 E-value=71 Score=25.89 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.......+|..+++.++..+....+|..+..+|...+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek 50 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777777766666664443
No 270
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.71 E-value=31 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (389)
..|||+++|+.-....+|+.+-..|-.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345665555554444444444444433
No 271
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=58.70 E-value=48 Score=26.02 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 339 YKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+.-.-++.|...|..+|+.++.|.+..+.+.+
T Consensus 61 eeG~~L~k~C~~~L~~AE~kV~~L~~~~~~~~~ 93 (100)
T 1vp7_A 61 RRGVELARVCQDRLAQAEQQVKVLEGDLLRPLD 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 344555788999999999999999665555443
No 272
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.59 E-value=77 Score=26.19 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQV 345 (389)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (389)
+.+..+.+....+
T Consensus 103 ~k~e~~~~e~~~l 115 (138)
T 3hnw_A 103 IKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 273
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.53 E-value=37 Score=25.51 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (389)
+..++++-+....+|+.+.+.||..+..++--....+..|.+|...|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777777888888888888888877777777777777777665
No 274
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.53 E-value=58 Score=24.73 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
.....++..+++.++..+....+|..+..+|..+.... .. ++....+-.++|-...++|...|+.+
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L---~~-----------ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL---FG-----------SMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888888888877775544321 11 15666677777777777777777654
No 275
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.97 E-value=91 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
..+..++..++..++..+..+.+++....++|..+..
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555444433
No 276
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=57.92 E-value=79 Score=27.08 Aligned_cols=69 Identities=10% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKL----EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
.+++|+.+++.-.....--+++++.+ ..++..|.+..--=..++-++-.+=..|++|..+|-.++++|.
T Consensus 69 SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs 141 (201)
T 3u0c_A 69 SLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLS 141 (201)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555544333222233344433 3344444444333334555555555566666666666655554
No 277
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.84 E-value=91 Score=26.75 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
+...+.+...|++....|-.+|..-+.-.++....+.-|+.-+..|+...+++|..
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444443
No 278
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.84 E-value=24 Score=21.97 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
.+|||+++|+.=+...+|++....|-++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3567766666555555555555554433
No 279
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.53 E-value=61 Score=36.30 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (389)
+.++..+++.++..+..+.+|+.+...|+.+
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 280
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=56.81 E-value=69 Score=26.61 Aligned_cols=54 Identities=26% Similarity=0.235 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL--------YKCFIQVNEYAERL 352 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 352 (389)
.++.|++...+|.+-..++++.+.+..|+.+.|.+.++|+ |+++++=.|..+.+
T Consensus 47 GV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~K~~k~p~v~Dy~~~v~e~Dek~~~ 108 (140)
T 1avo_B 47 GVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYR 108 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTBTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999989999999999999999999999998 55555555555544
No 281
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=56.57 E-value=46 Score=27.21 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 016463 317 LEEALINAKKLSSHRQKQLTKLYKCFIQV-NEYAERLKSCE 356 (389)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 356 (389)
+|.++-.....++.=..-|+.|+-+|.+| ++|++-||+..
T Consensus 67 meaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 67 VEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333444444445677777777764 79999999875
No 282
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.37 E-value=27 Score=21.61 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016463 307 VLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.||..+...||+++.-.++|
T Consensus 9 VEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 334555555555555444443
No 283
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=55.91 E-value=22 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 330 HRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.--..|+.+.+.||+=---++-|+-.++.++.+.+.+|..
T Consensus 29 ~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~ 68 (114)
T 1hx1_B 29 ELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKI 68 (114)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777776666777777777777777766654
No 284
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.70 E-value=31 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016463 301 NVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+-|++++.+|+.+...||...
T Consensus 25 eRK~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777776666533
No 285
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=55.32 E-value=66 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=8.6
Q ss_pred CCCCCCHHHHHHHhhccC
Q 016463 47 LPYSANEDSVRKVFDKYG 64 (389)
Q Consensus 47 Lp~~~te~dL~~~F~~~G 64 (389)
+|..++..-+..++..+|
T Consensus 546 ~p~~td~~~~~kl~~~~~ 563 (1184)
T 1i84_S 546 FPKATDTSFVEKLIQEQG 563 (1184)
T ss_dssp CTTCCHHHHHHHHHHHTS
T ss_pred CCCCChHHHHHHHHHHhC
Confidence 344444444555555554
No 286
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.32 E-value=27 Score=21.98 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.+|||+++|+.-....+|+..-..|..++
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35677666666666666666655555544
No 287
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=54.76 E-value=55 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
+..++..+++-+....||..+...++.....+.+|-
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666666666663
No 288
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.58 E-value=98 Score=26.16 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 282 SIQRREELKKEISHMEE-------RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (389)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (389)
..|..+....+|..|.+ +.+.-+..+.-||+.+-.||+.+.+++... ..+...|-..|..|..+...+--
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~---~~i~~eLd~tl~el~~~~~~~~~ 144 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY---KAISEEMKQLEDKVEELLSKNYH 144 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccchHH
Confidence 33445555566666654 444455677778888888888777765433 23444566677777776665555
Q ss_pred HHHHHH
Q 016463 355 CEREFQ 360 (389)
Q Consensus 355 ~~~~~~ 360 (389)
.++++-
T Consensus 145 ~~~~~~ 150 (155)
T 2efr_A 145 LENEVA 150 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 289
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.98 E-value=66 Score=23.67 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (389)
.++++-+....+|+.+.+.||..+..++--....+..|.+|...|.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666677778888888888887777666666677777776664
No 290
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.94 E-value=51 Score=24.97 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
...-.+..|+..|...++.-+..-.+-...-+.+|......+|.--.=-+.=+.|...+--|++.-.-||
T Consensus 14 ~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 14 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555544444444444444445555555555555443333333444444444444444443
No 291
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=51.72 E-value=25 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 337 KLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
....||.||.+++|+.--....|++|
T Consensus 10 Rve~m~~~l~Evnekv~~ik~sL~~L 35 (56)
T 3e7k_A 10 RVEQMSIQIKEVGDRVNYIKRSLQSL 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999987777777765
No 292
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.54 E-value=40 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 295 HMEERVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (389)
.|++++++.++.+.+|+.+.+++..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~ 31 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAA 31 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 293
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.42 E-value=20 Score=22.19 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016463 307 VLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.+|..+...||+++.-.+.|
T Consensus 9 VEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 334555555555555544443
No 294
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.40 E-value=38 Score=20.92 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016463 307 VLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.+|..+...||++++-.+.|
T Consensus 9 vEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 344555566666665554444
No 295
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=50.38 E-value=71 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 289 LKKEISHMEERVNVKEQLVLDLQKR 313 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (389)
+...++.|++.+..|++++..|+.-
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~ 40 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEV 40 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888899999888877653
No 296
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.82 E-value=88 Score=24.19 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 016463 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 341 (389)
.+++.+|. ++-+.....++.+..+..+..+..+..++|.++....|.-..=+..|-++...
T Consensus 6 ~iKkKm~~---lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 6 AIKKKMQM---LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 33334444567777777778888888888888777665555444444444443
No 297
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=48.71 E-value=93 Score=31.01 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHH---H--HHHHHHHHHH
Q 016463 273 SDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS----HRQ---K--QLTKLYKCFI 343 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~----~~~---~--~~~~~~~~~~ 343 (389)
.|+....++.|+..+.+=.+|++......+.-+.++...++.|+.-.-...+.+.++ ..+ + ++...-..+-
T Consensus 87 ~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~ 166 (461)
T 3ghg_B 87 LQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLR 166 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 344445566677766666666666655555555555544444443111122222221 111 1 2223445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 344 QVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+|+.--+.|.+-=+.|+..|.+.+..
T Consensus 167 ~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 167 VLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 67777777777777788878777665
No 298
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=48.19 E-value=1.9e+02 Score=36.19 Aligned_cols=9 Identities=0% Similarity=0.043 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 016463 336 TKLYKCFIQ 344 (389)
Q Consensus 336 ~~~~~~~~~ 344 (389)
.+|+..|..
T Consensus 2045 ~~L~~~~~~ 2053 (3245)
T 3vkg_A 2045 ATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 299
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.12 E-value=43 Score=20.80 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016463 306 LVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
.+.+|..+...||++++-.+.|
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 3444555666666666555544
No 300
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=47.93 E-value=1.1e+02 Score=24.62 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESDIPD 374 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (389)
+|..=|+.+-.-|-+|..||..+=.+|+.+|..+ .+.|.++
T Consensus 53 kq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~-~~~~~~~ 93 (116)
T 3mxz_A 53 QQENVLGESRMMIPDCHKRLESALADLKSTLAEL-EETDEKE 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC-CCC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-cccCCCC
Confidence 4455588888899999999999999999999876 4445543
No 301
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=46.92 E-value=2.3e+02 Score=28.19 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 016463 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ 332 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 332 (389)
+..+..++..|..|+..|++-...-.+.....+.|.+....+.|...-.+
T Consensus 87 ~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~ 136 (461)
T 3ghg_B 87 LQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNE 136 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcch
Confidence 35566777778888766666666665656566666555555544444443
No 302
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.90 E-value=2.3e+02 Score=35.38 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (389)
.|++.++..+++.+++.++...+++.+.+.||.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~ 2042 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEK 2042 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555544444444444444433
No 303
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.15 E-value=94 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 296 MEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
|+.+++..+++...|..+...|+.++
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433444444444444443333
No 304
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=45.06 E-value=1.5e+02 Score=25.66 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 275 QVKELDRSIQRREELKKEISHMEERVNVKEQ--------LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
.....+..|+.+..+..+|...+..++.... ....+..+...|+..-.....++..|+..|..||+-|-.+.
T Consensus 51 Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le~l~~F~~~~~ 130 (224)
T 2iak_A 51 DLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRAT 130 (224)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888887766665432 23457778888888888889999999988887777777776
Q ss_pred HHHHHHHHHHH
Q 016463 347 EYAERLKSCER 357 (389)
Q Consensus 347 ~~~~~~~~~~~ 357 (389)
+...=|...|.
T Consensus 131 ~~~~Wi~eke~ 141 (224)
T 2iak_A 131 NELIWLNEKEE 141 (224)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 305
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.97 E-value=80 Score=22.32 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+....+..++..|+.+-.+.+..+..|+...+.|-+++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555554444
No 306
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.79 E-value=1.2e+02 Score=30.45 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhc
Q 016463 358 EFQSIVDAAMTES 370 (389)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (389)
.+|+++|+|..|+
T Consensus 406 ~~~a~~d~~~~~~ 418 (551)
T 2b5u_A 406 NKQAAFDAAAKEK 418 (551)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcc
Confidence 3477777776664
No 307
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.65 E-value=40 Score=20.92 Aligned_cols=29 Identities=7% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.+|||+++|+.=....+|+..-..|-+++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35777777777777777777777766554
No 308
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=44.30 E-value=65 Score=21.13 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
.+++||-.+...+.++-....-||+..|.|
T Consensus 8 slasqvvkltkql~eqt~~rv~lq~qlq~l 37 (48)
T 2kes_A 8 SLASQVVKLTKQLKEQTVERVTLQNQLQQF 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888777777788877776
No 309
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.08 E-value=37 Score=32.08 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHR 331 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 331 (389)
..++..+...+++++..+.++.+|+++.+.||.+..+.+|-..++
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344444455566788888888888888888888777766643333
No 310
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.61 E-value=1.2e+02 Score=30.18 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
.+|-.+.++-.+...++.+|+.+..++..+...+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555556666665555554443
No 311
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=42.58 E-value=24 Score=28.63 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
+.++.++|.+.-.-.-=+....+|-+..++. |.+.++... -|++....|.+..-.-.=.-+-++..|.++|.|.|.
T Consensus 18 ~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRN---IRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDk 94 (121)
T 3lf9_A 18 EALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRN---IARDAANDLAALGKDKEVNWFDISQALWEIQKLTDV 94 (121)
T ss_dssp HHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHH
Confidence 3455555554411111122334455555554 666665544 345444444432111011234577788889988888
Q ss_pred HhhhcC
Q 016463 366 AMTESD 371 (389)
Q Consensus 366 ~~~~~~ 371 (389)
.+.+||
T Consensus 95 yIkkID 100 (121)
T 3lf9_A 95 AVKKID 100 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 312
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=42.52 E-value=2.5e+02 Score=29.38 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
...||.+++..+...+......-..=-.+|+..+..|.+++......+.-|+-||.|
T Consensus 606 f~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~re~~~~~l 662 (704)
T 2xs1_A 606 SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNL 662 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 344454555554444433322222222445555555555544333333334444444
No 313
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=42.51 E-value=50 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 323 NAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.++|+..-+-..|+.|.+.||+----.+.|+-.++.++.+.+.+|..
T Consensus 31 ~~~kl~~~n~~el~~iekGFL~k~l~~ea~kkldKrik~~~E~~MK~ 77 (137)
T 1t7s_A 31 NLQKAYDLNLRDVADLERGFLEKPKQVEMGKKLEKKVKYFNEEAERH 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHhhhccHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555555668899999999997777888999999999999988876
No 314
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.46 E-value=81 Score=21.67 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 332 QKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
+...++|-..+-.|..+.+.+..|+.+++
T Consensus 29 ~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666655544
No 315
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.97 E-value=1e+02 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 338 LYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
|..|--....+..+++.+|+||+.+
T Consensus 53 l~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 53 LEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333334445677888888888753
No 316
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=41.86 E-value=43 Score=20.85 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016463 306 LVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
.+.+|..+...||++++-.++|-
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556777777777777666654
No 317
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.77 E-value=73 Score=23.73 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (389)
...++.+++..+++...|..+...|+.++...+.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555444444433
No 318
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.72 E-value=1.4e+02 Score=30.03 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
+|-.+.++-.+.+.++.+|+.+..++-.+...+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555554444333
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.61 E-value=1.7e+02 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 336 TKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
.+.+...-++++.+++|+..-.||...+..|-
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 34455555666666666666666655554443
No 320
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.49 E-value=42 Score=20.91 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 305 QLVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
..+.+|..+...|+++++-.++|-
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh
Confidence 334456667777777776666553
No 321
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.19 E-value=71 Score=20.68 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
+..|++....||.+-.+.+|...+..+.+.-|.|-...|+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777776666666554443
No 322
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.86 E-value=2.6e+02 Score=27.12 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 303 KEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~ 322 (389)
-++.+.|+|+.++++|-+-.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhh
Confidence 45556666666666655433
No 323
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.86 E-value=1.3e+02 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
+++++-...|..|+.++..|..++.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444443
No 324
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.10 E-value=2e+02 Score=27.81 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016463 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (389)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (389)
+-++++....+.++++.+..+-..+.+++.+.-.+|.++-..-..|.||
T Consensus 66 ~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~ 114 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI 114 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 3344445555566666666666666666666556665554444444433
No 325
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.67 E-value=1.2e+02 Score=24.25 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 342 (389)
..+.|+++.++..+++++.+-+|..| .++|.++.+....|....+.+-..+...+
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~L---nq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTL---NHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhchhhhhHhhhcc
No 326
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.57 E-value=1.4e+02 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRS 314 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (389)
+.+..+=+.|+-++..-+..+.++..|+
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445555555555555443
No 327
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=39.54 E-value=1.1e+02 Score=26.67 Aligned_cols=57 Identities=30% Similarity=0.439 Sum_probs=34.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE---YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+|-+..++. |.+..+ +..-|++...+|.+. .++ ..+-++.+|.++|.|.+..+.++|
T Consensus 113 elvK~~k~~~E~aKva---iRniRrda~~~lKk~---~K~~~iseD~~k~~e~~iQkltd~~i~~id 173 (185)
T 1eh1_A 113 DLVRAVRQYAEEGRVA---IRNIRREALDKLKKL---AKELHLSEDETKRAEAEIQKITDEFIAKAD 173 (185)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh---hhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 555554 445566666666552 222 246677888888888888777765
No 328
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=39.40 E-value=34 Score=27.84 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=34.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 308 LDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 308 ~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+|-+..+++ |.+.++ +..-|++...+|.+.--.-.=..+-++..|.++|.|.+..+.+||
T Consensus 49 keLvK~akk~aEeaKVa---IRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID 110 (123)
T 3lhp_S 49 KDWLKIVRGEAEQARVA---VRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE 110 (123)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 665555 344556555544443100000134567788888888888887765
No 329
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.35 E-value=43 Score=27.72 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 016463 353 KSCEREFQSIVDAA 366 (389)
Q Consensus 353 ~~~~~~~~~~~~~~ 366 (389)
+..|+||-.|--++
T Consensus 70 ~~ie~ElE~LTasL 83 (135)
T 2e7s_A 70 DKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 330
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.92 E-value=54 Score=28.31 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=36.2
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEEeeCCCCCCceEEEEEEcC-hHHHHHHHH
Q 016463 41 SVYVGGLPY-S--------ANEDSVRKVF--DKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAIN 98 (389)
Q Consensus 41 ~lfVgnLp~-~--------~te~dL~~~F--~~~G~I~~v~v~~d~~~~~kG~aFVeF~~-~~~A~~Al~ 98 (389)
++.|.|+|. . .....|.+.| ..|.++. |..+.+..+ +.|+|.|.|.. -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 344557776 1 2346888877 9998876 444444444 67899999984 444455555
No 331
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=38.60 E-value=3e+02 Score=27.61 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------------HHHHHHHH---H-HHHHHHHHHHHHHhhh-c
Q 016463 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ------------VNEYAERL---K-SCEREFQSIVDAAMTE-S 370 (389)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~---~-~~~~~~~~~~~~~~~~-~ 370 (389)
.+-+++..-||-++.+..++.-...+.|.+|.+++.. |.+|.++. + ..|.|=+.|..-|+.| +
T Consensus 142 ~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~ 221 (526)
T 3iyk_A 142 IEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIA 221 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3456788888999999999999999999999998853 33333332 1 2355556666666666 6
Q ss_pred CCCCc
Q 016463 371 DIPDD 375 (389)
Q Consensus 371 ~~~~~ 375 (389)
||+-|
T Consensus 222 dmsae 226 (526)
T 3iyk_A 222 GMTAD 226 (526)
T ss_pred cchHH
Confidence 66443
No 332
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=38.41 E-value=94 Score=27.68 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 016463 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH-----RQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
+...++..+++.+++.++++.+|..+.+.+--...+.+|-+.. +.-.+.+|-+.||-|-|.-++.-
T Consensus 56 ~~~~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl 126 (213)
T 4ani_A 56 PTAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERAL 126 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344555566666666777777777776666555555554332 22445567778888877777654
No 333
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.40 E-value=67 Score=25.32 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
..|+.|++.|++.+....+++..++...+.|.+..
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~ 43 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDT 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35666666677666666666666666666665443
No 334
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.28 E-value=1.6e+02 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.043 Sum_probs=6.2
Q ss_pred HHHhhhHHHHHHHHHHH
Q 016463 324 AKKLSSHRQKQLTKLYK 340 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~~~ 340 (389)
++.+...-|....+|.+
T Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHH
Confidence 33333333333333333
No 335
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.16 E-value=2.6e+02 Score=28.07 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
+|-.+.++..+.+.++.+|+.+..++..+...
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666655555555444
No 336
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=38.08 E-value=6.7 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 332 QKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
|.||++|-..+-.+..+||+||...+--++|.++-+..
T Consensus 49 QrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~ 86 (95)
T 3n7n_E 49 QRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSS 86 (95)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888999999999888888877766544
No 337
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.95 E-value=47 Score=24.79 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQ 344 (389)
Q Consensus 333 ~~~~~~~~~~~~ 344 (389)
..|..|...|+|
T Consensus 64 ~E~~~Lr~ll~q 75 (78)
T 1gu4_A 64 RELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHTTTC-
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 338
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.63 E-value=46 Score=20.73 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+|||+++|+.=....+|+.....|-.++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677777777777777777777765554
No 339
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=37.38 E-value=86 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 016463 350 ERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+-+|..|.++|.|.+..+.++|
T Consensus 175 De~k~~e~eiQklTd~~i~~iD 196 (209)
T 4gfq_A 175 DDLRGYTEDIQKETDKYIAKVD 196 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776666654
No 340
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.34 E-value=1.3e+02 Score=22.69 Aligned_cols=6 Identities=0% Similarity=0.091 Sum_probs=2.3
Q ss_pred HHHHHH
Q 016463 278 ELDRSI 283 (389)
Q Consensus 278 ~~~~~~ 283 (389)
+.|.+.
T Consensus 24 KrEaA~ 29 (84)
T 1gmj_A 24 KREQAE 29 (84)
T ss_dssp HHHHHH
T ss_pred cHHHHh
Confidence 334433
No 341
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.31 E-value=1.1e+02 Score=29.95 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
+.++.++..++++.++.+..+.+++...+.|+..+....
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777766665544
No 342
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.24 E-value=74 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=27.4
Q ss_pred eEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce
Q 016463 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 66 I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
|..|.++. ..+||.||++...++...++....|..
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 55666653 278999999999999999998777653
No 343
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=37.22 E-value=2.2e+02 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 346 NEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
++.|++.+..|+-.+.-+..||.|
T Consensus 174 q~v~~~~~~le~~~~~~~r~AL~E 197 (253)
T 2d1l_A 174 QDVNDKYLLLEETEKQAVRKALIE 197 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666665
No 344
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.21 E-value=1.8e+02 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 342 FIQVNEYAERLKSCEREFQSIVDAA 366 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (389)
+...+..-++++...++|++.|.++
T Consensus 123 leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 123 LEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344445556666777777776543
No 345
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.90 E-value=65 Score=20.27 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
++.-.+..+.||..+...||+++.-.++|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445556666777777776666554443
No 346
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.46 E-value=1.5e+02 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016463 345 VNEYAERLKSCEREF 359 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~ 359 (389)
|.+++.+|...+.+|
T Consensus 64 L~e~~~kid~L~~el 78 (98)
T 2ke4_A 64 IAETLSNIERLKLEV 78 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 347
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.44 E-value=65 Score=19.87 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+|||+++|+.=....+|+..-..|-+++
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5777778777777777887777776554
No 348
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.35 E-value=1.1e+02 Score=21.51 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 324 AKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (389)
.-|+...=...|..||+-+..|+.+|-.|+
T Consensus 32 LmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 32 LMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 334444445566677777777777666654
No 349
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.18 E-value=78 Score=19.67 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016463 307 VLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.||..+...||+++.-.+++
T Consensus 10 VEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 10 VEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344555556666655544443
No 350
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=36.15 E-value=1.5e+02 Score=25.81 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=33.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 308 LDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE---YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 308 ~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+|-+..++. |.+..+ +..-|++...+|.+. .++ ..+-++.+|.++|.|.+..+.++|
T Consensus 111 kelvK~~k~~~E~aKva---iRniRrda~~~lKk~---~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1dd5_A 111 EKWVKKAKEIVEEGKIA---IRNIRREILKKIKED---QKEGLIPEDDAKRLENEIQKLTDEFIEKLD 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh---hhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 555543 344556555555551 122 246677778888888777777765
No 351
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=35.92 E-value=1.4e+02 Score=25.92 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE---YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+|-+..++. |.+..+ +..-|++...+|.+. .++ ..+-++.+|.++|.|.+..+.++|
T Consensus 112 elvK~~k~~~E~aKva---iRniRrda~~~lKk~---~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1ise_A 112 DLTKIVRGEAEQARVA---VRNVGRDANDKVKAL---LKDKEISEDDDRRSQDDVQKLTDAAIKKIE 172 (185)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh---hhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 555543 344455555555551 122 246677777777777777777654
No 352
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.50 E-value=3.2e+02 Score=26.51 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016463 345 VNEYAERLKSCEREFQ 360 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~ 360 (389)
|++....++..|++||
T Consensus 445 ~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 353
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=35.17 E-value=3.3e+02 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 016463 308 LDLQKRSKKLEEA-LINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (389)
Q Consensus 308 ~~l~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (389)
..++.+.+.+|.+ ...+..|...|+..|.||++.+.-+...-.
T Consensus 75 ~~~~~~~~~~~~~lq~~~~~L~~~R~~l~~~~~~~l~~~~~lq~ 118 (585)
T 1y1u_A 75 TALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQT 118 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554555553 335667888888888888887765544433
No 354
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.14 E-value=1.5e+02 Score=22.54 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
...+++.+...||.+-+..+.--.+=...|..|..-|+|+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 33344444444444333333333333344555555555543
No 355
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.75 E-value=1.4e+02 Score=22.12 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (389)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (389)
+.+|+.|..=+|+.+......-..-|+++.+|+..+ +-..++|+..
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql---~~L~~rl~~~ 61 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELI---RHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 344455555555555555555555666677776543 3334455443
No 356
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.53 E-value=30 Score=23.84 Aligned_cols=21 Identities=5% Similarity=0.240 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEE 319 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~ 319 (389)
+++..+++..+|+.|...|..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444433
No 357
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.47 E-value=1.1e+02 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
+..|..++..+++++++.+..+.+++...+.++.++..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888888766543
No 358
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=34.34 E-value=70 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e 318 (389)
++++-.+.++.||+..+..++
T Consensus 28 DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 28 DEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566667777777777776665
No 359
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=34.31 E-value=1.4e+02 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
+-.+.|..|..+.+...+|+.+|..|
T Consensus 55 vA~~tyda~~~l~~ak~~L~~~e~~~ 80 (81)
T 3csx_A 55 TAEKTYEIFRELDQLKKKLNIWEETL 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34578888999999999999888654
No 360
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.27 E-value=99 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=19.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 323 NAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQS 361 (389)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
+|.+-..-++..+..|.....+|...|..|+..-..|+.
T Consensus 20 AArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 20 AARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555544444443
No 361
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=33.79 E-value=1.5e+02 Score=22.42 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKL-EE---ALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~-e~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
++++....+...++|..|| |+ ++-+++.. .++ +-..=+.|...|.+|...-+||+.|
T Consensus 22 ~le~~r~~ir~eI~KElKiKeGaENL~katt~~--kk~-----~~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 22 QLELERERLRREIRKELKLKEGAENLRRATTDL--GRS-----LGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555 43 33333320 111 1122234666777777777777765
No 362
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=33.34 E-value=1.4e+02 Score=25.86 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=32.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 308 LDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE---YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 308 ~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
.+|-+..++. |.+..+ +..-|++...+|.+. .++ ..+-++.+|.++|.|.+..+.++|
T Consensus 111 kelvK~~k~~~E~aKva---iRniRrda~~~lKk~---~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1is1_A 111 KDLVKIVRGEAEGGRVA---VRNIRRDANNDLKAL---LKDKEISEDEDRKAQEEIQKLTDVAVKKID 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh---hhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 555543 344556555555551 121 246677777788888777777665
No 363
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=33.30 E-value=84 Score=19.39 Aligned_cols=28 Identities=4% Similarity=0.179 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.|||+++|+.=....+|+.....|..++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5778888888888888888877776654
No 364
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=33.27 E-value=2.9e+02 Score=25.44 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 016463 324 AKKLSSHRQKQLTKLYKCFIQVNEYA 349 (389)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (389)
..++...++...+.|-.+|..++++-
T Consensus 210 v~~~n~~~~~~~~~~~~~~~~~Q~le 235 (337)
T 2x3v_A 210 LEDVGKTTPQYMEGMEQVFEQCQQFE 235 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666554
No 365
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=33.09 E-value=71 Score=27.80 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 307 VLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 307 ~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
..||-+..++. |.+..+ +..-|++...+|.+.- +=..+-++.+|.++|.|.+..+.++|
T Consensus 112 RkelvK~~k~~~E~aKva---iRniRrda~~~lKk~~---kiseD~~k~~e~~iQkltd~~i~~id 171 (184)
T 1ge9_A 112 RRELVRLLHKITEEARVR---VRNVRREAKEMIEELE---GISEDEKKRALERLQKLTDKYIDEIN 171 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHST---TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 666654 4455666666666622 21346778888889988888887765
No 366
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.09 E-value=60 Score=20.11 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
+|+|+++|+.=....+|+.....|-+++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5788888888888888888888777665
No 367
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.99 E-value=1.2e+02 Score=20.83 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 333 KQLTKLYKCFIQVNEYAERLKSCEREFQS 361 (389)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (389)
.+|..|.....+|...|..|+..-..|+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444443
No 368
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=32.86 E-value=3.9e+02 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 346 NEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
+.|...++..+.+|+.|-+++..|
T Consensus 156 ~s~~~i~~~e~~~l~~L~~AL~kE 179 (526)
T 3iyk_A 156 TSYNKILTEEDLQMRRLATALQKE 179 (526)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555555555555555555
No 369
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=32.36 E-value=1.5e+02 Score=25.69 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=31.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q 016463 309 DLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFIQVNE---YAERLKSCEREFQSIVDAAMTESD 371 (389)
Q Consensus 309 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+|-+..++. |.+..+ +..-|++...+|.+. .++ ..+-++.+|.++|.|.+..+.++|
T Consensus 112 elvK~~k~~~E~aKva---iRniRrda~~~lKk~---~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1wqg_A 112 ELVKQAKHKGEEAKVS---VRNIRRKAMEELHRI---RKEGEAGEDEVGRAEKDLDKTTHQYVTQID 172 (185)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh---hhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 555543 334455555555551 121 245667777777777777776654
No 370
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.58 E-value=1.8e+02 Score=22.42 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
++++..+.+++.+......++..+...++..+...
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555444443
No 371
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.47 E-value=1.3e+02 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCER 357 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~ 357 (389)
+-.+.|..|..+.+...+|+..|.
T Consensus 43 vA~~tyda~~~l~~ak~~L~~~~~ 66 (71)
T 2js5_A 43 VAEKTYEAYRQLDEFRKSTASLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888888877764
No 372
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.90 E-value=95 Score=19.29 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016463 306 LVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
.+.||.++...|++++.-.++|
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3445666666666666655554
No 373
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=30.87 E-value=72 Score=20.08 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.-.+..+.+|..+...||+++.-.++|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444556667777777777666554443
No 374
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.84 E-value=84 Score=23.31 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
..-+.+-.+-+++.++++.-++....++.+.+.||.++
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555545555555444443
No 375
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.80 E-value=1.7e+02 Score=21.88 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 313 RSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 313 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
..+.|+++|..-.+|- +.|..+..-...+++.|..|+..-.+.|.|++-
T Consensus 25 RR~AL~eaL~EN~~Lh----~~ie~~~eEi~~LkeEN~~L~el~~~~~~laev 73 (79)
T 2zxx_A 25 RRKALYEALKENEKLH----KEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 73 (79)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555542 356666777777778888888877777777764
No 376
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=30.31 E-value=1.9e+02 Score=22.25 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCC
Q 016463 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG 102 (389)
Q Consensus 37 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g 102 (389)
...+-|-|-|+|..+-..++.-...-.|---.|..+. |-|.|.|.+.++..-|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHh
Confidence 4567888899999998888776666677655665533 6899999999999999987643
No 377
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.14 E-value=4e+02 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISHMEERVNV 302 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
|+....++.|+..+.+=.+|+..-...++
T Consensus 31 kye~~V~~~l~~L~~~l~~isn~Ts~~~~ 59 (411)
T 3ghg_C 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQ 59 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhHHHHHHHHHHHHHhhhhHHHH
Confidence 33334555666655555555554443333
No 378
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.02 E-value=1.9e+02 Score=22.42 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEE---RVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
+...+++.||+.|+. .+|.-....+-|.+|+.-|+.+|....
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455666667777663 344444455555666666666665443
No 379
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=29.87 E-value=1.1e+02 Score=25.81 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.-+.|+.|-....++++.|++++.||+...-.+..++
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv 42 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLV 42 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455666666666655555444444433
No 380
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=29.83 E-value=2.1e+02 Score=22.64 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 016463 333 KQLTKLYKCFIQV--NEYAERLKSCEREFQSIVDAAMT 368 (389)
Q Consensus 333 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 368 (389)
..+.+|++.+..| ++....++.+|++|+.|++.+-.
T Consensus 68 e~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~I~~ 105 (122)
T 2oeq_A 68 DEIEQAQKAMALAQQNEKLARLMALEQQMSITIAEVQQ 105 (122)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444 45667788899999998876543
No 381
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.56 E-value=2.3e+02 Score=23.19 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016463 336 TKLYKC 341 (389)
Q Consensus 336 ~~~~~~ 341 (389)
.+|.+-
T Consensus 113 ~~l~~~ 118 (138)
T 3hnw_A 113 KELKSE 118 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 382
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.51 E-value=4.1e+02 Score=25.96 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS----CEREFQSIVD 364 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 364 (389)
+..|++.++.=...+...++-.++++........+...-....++++..|.-+.+|.+.|.. |...++.+-+
T Consensus 251 ~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~fk~~~~~~~~~~~~ 326 (413)
T 4hpq_C 251 NSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLEDIRQTRN 326 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.49 E-value=1.9e+02 Score=25.44 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEE 298 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (389)
+.-+.|+.+|..+++
T Consensus 115 eEN~~Lh~~ie~l~e 129 (209)
T 2wvr_A 115 KENEKLHKEIEQKDN 129 (209)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444333333
No 384
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.36 E-value=3.1e+02 Score=28.15 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 348 YAERLKSCEREFQSIVDA 365 (389)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~ 365 (389)
+.+..+...+|++.|=..
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555555555444
No 385
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.23 E-value=1.2e+02 Score=19.90 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
+.--|+|-+.+..++-+..|...+..||++++
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33334455555555556666666666665543
No 386
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=28.97 E-value=2.5e+02 Score=23.47 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREF 359 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (389)
.+-+|-..=.-+++|.++|-.++.+|
T Consensus 67 ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 67 SIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666665554
No 387
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.75 E-value=1.5e+02 Score=20.54 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
.-..|+.||..|+.+...-.+...|-|+..+.||..+
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555665555444444444444444444454433
No 388
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.92 E-value=1e+02 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRS 314 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (389)
+.|+.|++.|+.+++...+.+.||..+.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666665543
No 389
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.59 E-value=2.2e+02 Score=23.09 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (389)
.+++.+..+.+|+.+..+||-++..+..+..---..+..|.+.+..-+
T Consensus 62 ~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~Kk 109 (125)
T 2pms_C 62 KLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKK 109 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 345556667777777777776666544321111134555665544433
No 390
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=27.48 E-value=1.1e+02 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDL 310 (389)
Q Consensus 299 ~~~~~~~~~~~l 310 (389)
+|++-++.+++|
T Consensus 13 ~L~~~e~l~~el 24 (184)
T 4egx_A 13 RLKETEKIIAEL 24 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 391
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.90 E-value=1.6e+02 Score=22.69 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
++.++.+.+..+|--.+=|++.. +|++.-..++..+++||-..
T Consensus 45 NqTV~tL~~SL~kekaq~q~qq~-------~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 45 NLTVVTLQESLEKKVSQALEQQA-------RIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555444433 46666666667777776543
No 392
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.89 E-value=2.5e+02 Score=22.57 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
.+.++.+|..| ..+.+.-+..|......||.+|+.++++
T Consensus 24 ie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 24 ISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 3445677888888888888888888765
No 393
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=26.73 E-value=3.6e+02 Score=26.31 Aligned_cols=64 Identities=22% Similarity=0.441 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHH
Q 016463 274 DQVKELDRSIQRREELKKEISH-ME------------ERVNVKEQLVLDLQKRSKKLE-EALINAKKLSSHRQKQLTK 337 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~~~~~ 337 (389)
|..+++|++|--++-|.+||.. +| .....++.++--|+++...-| .+.+.++.++--|.-.-.|
T Consensus 354 kaqkdlekslrkrehlekev~kkle~~~~nkn~meakaqansqkd~ifalin~ea~kearAtal~kNfsgIrkELsdK 431 (569)
T 4dvz_A 354 KAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDK 431 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhhccccchHHHHhhhhhhhhHHHHHhhhhhHHhHHHHHHH
Confidence 4445889999999999999874 22 244455555555666555443 3344445555555533333
No 394
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.63 E-value=96 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=28.0
Q ss_pred CeEEEEEeeCCCCCCceEEEEEEcChHHHHHHHHhcCCce
Q 016463 65 SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (389)
Q Consensus 65 ~I~~v~v~~d~~~~~kG~aFVeF~~~~~A~~Al~~l~g~~ 104 (389)
.|.+|..+.. .+||.|||=....+...|+..+.+..
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4667666433 78999999999999999998776543
No 395
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.51 E-value=3.5e+02 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.|.-+++...|..+.+++|..+.+..+-
T Consensus 495 ~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 495 KAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 396
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.49 E-value=1.5e+02 Score=20.08 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 299 RVNVKEQLVLDLQKRSKKLEEALINAK 325 (389)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (389)
+.|--+..+..||+..-.||+.+...+
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eK 32 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQK 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556777778888888888776553
No 397
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.40 E-value=1e+02 Score=22.69 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 277 KELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRS 314 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (389)
.-+..+|.-...|..++..|+++++....+...|+.+.
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555554444444444443
No 398
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=26.16 E-value=42 Score=19.67 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 016463 353 KSCEREFQSIVDAAMT 368 (389)
Q Consensus 353 ~~~~~~~~~~~~~~~~ 368 (389)
|.-..|+|.|||.|-.
T Consensus 5 kkHqneFq~LVDqakk 20 (27)
T 2ybf_B 5 KKHKSEFQLLVDQARK 20 (27)
T ss_dssp HHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456799999998854
No 399
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=26.16 E-value=65 Score=23.76 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (389)
|.+|..+..|+||..++.+||-+-...+.+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666778888888888876655544443
No 400
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.15 E-value=90 Score=19.38 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 300 VNVKEQLVLDLQKRSKKLEEALINAKKL 327 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (389)
+.-.+..+.+|..+.+.||++..-.+-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444555666666666666665544433
No 401
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=25.94 E-value=3.1e+02 Score=23.41 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 016463 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLT 336 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 336 (389)
+.-+...+.++..-.+|++.++.+.....+|.++.-+|.-.+....|...+..+-|+
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~ 155 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLT 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344456677778888888999999999999999988888877777776666555443
No 402
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=25.92 E-value=3.4e+02 Score=24.24 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKR--------SKKLEEALINAKKLSSHRQKQLTK 337 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~--------~~~~e~~~~~~~~~~~~~~~~~~~ 337 (389)
|-.||..+|...+.+..++++ ...||-.....+|++-..|+-+.|
T Consensus 103 I~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksqk~~~k 155 (222)
T 3ok8_A 103 LQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNARE 155 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccChHH
Confidence 344555555555555444443 334566555666665555533333
No 403
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.84 E-value=3.7e+02 Score=24.21 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh-HHHHHHHHHHHHHHHHHH
Q 016463 274 DQVKELDRSIQRREE----LKKEISHMEERVNVKEQLVLDLQKRSKKLEEA-LINAKKLSS-HRQKQLTKLYKCFIQVNE 347 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 347 (389)
|.....|.++|+.+. +..+|..|+.+ +-....+..|+.+....|-+ +.+.+.|+. .|++.-.-|.-.|.-|.+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 175 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAHLKYK-DPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRE 175 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344466777777655 44445444421 00112233444444444222 222234433 566777777788899999
Q ss_pred HHHHHHHHH
Q 016463 348 YAERLKSCE 356 (389)
Q Consensus 348 ~~~~~~~~~ 356 (389)
+.|++-..=
T Consensus 176 ~aEK~~ila 184 (234)
T 3plt_A 176 LSEKFALIA 184 (234)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876543
No 404
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=25.81 E-value=1.2e+02 Score=24.92 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016463 352 LKSCEREFQSIVDAAMT 368 (389)
Q Consensus 352 ~~~~~~~~~~~~~~~~~ 368 (389)
++.+-+-|=..|++++.
T Consensus 94 ~R~kRK~lV~~iQ~~L~ 110 (135)
T 1i6z_A 94 SRLKRKNLVKKVQVFLA 110 (135)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 405
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.66 E-value=95 Score=22.46 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 272 NSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (389)
+...++++-+.|+..+ .-++.||..++.++.++.+|+++..|+-+.+..+
T Consensus 9 ~~~~~e~~~~~i~~Kd---e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 9 TSELEEDFAKILMLKE---ERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp --------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred chHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444444444433 2356677788888899999988888887766643
No 406
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.20 E-value=12 Score=31.57 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=16.5
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCCCCceEEEEEEc
Q 016463 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (389)
Q Consensus 54 ~dL~~~F~~~G~I~~v~v~~d~~~~~kG~aFVeF~ 88 (389)
+++.++|...|.|+.+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 345566776776654433 6789999875
No 407
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=25.02 E-value=4.2e+02 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 016463 322 INAKKLSSHRQKQLTKLYKCFIQVNEYAE-RLKSCEREFQ 360 (389)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 360 (389)
.+..++...++...+.|-.+|..++++.+ ||.....-|.
T Consensus 217 ~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~ 256 (350)
T 3aco_A 217 KSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLL 256 (350)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777553 4444433333
No 408
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.96 E-value=1.7e+02 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 290 KKEISHMEERVNVKEQLVLDLQKRSKKL 317 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (389)
+..-.+|++.++.+.+...+|.++.-+|
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 218 IDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333344444444444444444443333
No 409
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.79 E-value=79 Score=18.59 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016463 345 VNEYAERLKSCEREFQSIVDAAMTES 370 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (389)
|.-.-.-|...+++|++-|..++..|
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344456667778888888777654
No 410
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=24.15 E-value=3.9e+02 Score=23.94 Aligned_cols=80 Identities=14% Similarity=0.307 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKEQLV-----------LDLQKRSKKLEEALINAKKLSSHRQKQL---TKLYKC 341 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~ 341 (389)
....+..++..+.+..+|...+..++.-.... .+++.+...|...-.....+...|+..| ..|++-
T Consensus 35 l~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~~f 114 (322)
T 1u4q_A 35 LASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQF 114 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777776665554443322 3344556666555555566666777666 445555
Q ss_pred HHHHHHHHHHHHHH
Q 016463 342 FIQVNEYAERLKSC 355 (389)
Q Consensus 342 ~~~~~~~~~~~~~~ 355 (389)
|-.+.+...-|...
T Consensus 115 ~~~~~~~~~Wl~e~ 128 (322)
T 1u4q_A 115 FRDMDDEESWIKEK 128 (322)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 411
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=24.02 E-value=4e+02 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRS 314 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~ 314 (389)
|..|++.+|.-.+.+..++++.
T Consensus 105 i~pL~~kie~d~K~v~~~~K~~ 126 (253)
T 2ykt_A 105 LTQLEQKVELDSRYLSAALKKY 126 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3456667776666666555433
No 412
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.92 E-value=64 Score=23.53 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e 318 (389)
++++-.+.++.||+..+..++
T Consensus 46 DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 46 DEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777778888887776664
No 413
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.73 E-value=2.8e+02 Score=22.20 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016463 314 SKKLEEAL 321 (389)
Q Consensus 314 ~~~~e~~~ 321 (389)
...||.++
T Consensus 86 i~~lE~eL 93 (131)
T 3tnu_A 86 IGSVEEQL 93 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 414
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.42 E-value=1.2e+02 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~ 322 (389)
++.+.-|+.|.|.||..+.
T Consensus 7 ekkcaalesklqalekkle 25 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566655554443
No 415
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.29 E-value=2.3e+02 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (389)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (389)
....|...++..+.-+++..+.+.+.|+.+.+|+.++..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666555443
No 416
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.13 E-value=1.4e+02 Score=27.00 Aligned_cols=12 Identities=8% Similarity=0.360 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhh
Q 016463 358 EFQSIVDAAMTE 369 (389)
Q Consensus 358 ~~~~~~~~~~~~ 369 (389)
-+..||..+|.|
T Consensus 70 gaenlf~eII~E 81 (233)
T 2yko_A 70 KLENTLQDIIQE 81 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 466677777666
No 417
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.04 E-value=89 Score=28.58 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016463 300 VNVKEQLVLDLQKRSKKLE 318 (389)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e 318 (389)
+++.+.++..|+.++.+|.
T Consensus 56 l~eL~~ql~~L~arNe~L~ 74 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLM 74 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 418
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.01 E-value=2.4e+02 Score=21.16 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (389)
.+.|++.|..-.+| .+.|..+..-...+++.+..|+..-...|-|.
T Consensus 30 r~AL~eaL~EN~~L----h~~ie~~~eEi~~Lk~en~~L~elA~~~q~la 75 (83)
T 1wlq_A 30 RKALYEALKENEKL----HKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 75 (83)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444 34466666666666777777766665555554
No 419
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.99 E-value=2e+02 Score=20.10 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 313 RSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSI 362 (389)
Q Consensus 313 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (389)
+...+|.=-++|.+-..-++..+..|+.-..+|...|..|+..-..|+.-
T Consensus 3 r~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 3 RRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666665556666666666666666666655544444433
No 420
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.56 E-value=5.2e+02 Score=25.75 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhh
Q 016463 345 VNEYAERLKSCEREFQSI---VDAAMTE 369 (389)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~---~~~~~~~ 369 (389)
++...+.|+.+|.+|..| ++.+|..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555444433 4444444
No 421
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.40 E-value=1.1e+02 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 016463 304 EQLVLDLQKRSKKL 317 (389)
Q Consensus 304 ~~~~~~l~~~~~~~ 317 (389)
++++.+|+.+...|
T Consensus 29 ~~~~~~Le~~v~~L 42 (63)
T 2dgc_A 29 LQRMKQLEDKVEEL 42 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 422
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.23 E-value=1.6e+02 Score=18.71 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 284 QRREELKKEISHMEERVN 301 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ 301 (389)
+...+.+.||+.++.+++
T Consensus 8 mTLeEtkeQi~~l~~kl~ 25 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLL 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 423
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=22.09 E-value=2.6e+02 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 016463 310 LQKRSKKLEEALINAKKLSSHRQKQLTK 337 (389)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 337 (389)
++.+.+.++.......++.......+++
T Consensus 18 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (138)
T 4ayc_A 18 IQAKNKELEQTKEEKEKMQAQKEEVLSH 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444444433
No 424
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.67 E-value=5.1e+02 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016463 344 QVNEYAERLKSCEREFQSIV 363 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (389)
.+.+....|...|.+|+.|+
T Consensus 77 e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 77 EREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666554
No 425
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.25 E-value=5.2e+02 Score=25.78 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 344 QVNEYAERLKSCEREFQS 361 (389)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~ 361 (389)
++++..+.|+..|.+|..
T Consensus 79 ~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544443
No 426
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.20 E-value=3.7e+02 Score=22.56 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016463 301 NVKEQLVLDLQKRSKKLEEAL-INAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAM 367 (389)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (389)
.+......+.+....+|+.++ ..+.-|+.+=-..|..=.+.-..+..-++.|+..-++-..+|++.=
T Consensus 68 ~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 68 AKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345555554433 3455566666666666666666666777777777777777766643
No 427
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.20 E-value=1.5e+02 Score=20.16 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREFQSIVDAAMTE 369 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (389)
.|+||+|....|.+.-..-|.-...+..-++.++.|
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555555555544443333334444444444443
No 428
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=20.92 E-value=1.4e+02 Score=17.63 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 334 QLTKLYKCFIQVNEYAERLKSCEREFQ 360 (389)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (389)
.+-|||.-|| +.+.+-||.-|..|+
T Consensus 5 eiwklheefl--kkfeellklheerlk 29 (32)
T 1m3w_A 5 EIWKLHEEFL--KKFEELLKLHEERLK 29 (32)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3567888886 455666777776665
No 429
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.81 E-value=2.8e+02 Score=21.04 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQSIVDA 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (389)
..|...|+-.=+++-..++..+.|+.+...+.+. ....+.+.=..++..|.+....+...+.+|-..-..|+..|..
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777777666432 2344555556777788888887777777776666666655543
No 430
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.65 E-value=1.8e+02 Score=18.71 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016463 290 KKEISHM 296 (389)
Q Consensus 290 ~~~~~~~ 296 (389)
++++..+
T Consensus 6 kselqal 12 (48)
T 1g6u_A 6 KSELQAL 12 (48)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 431
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=20.47 E-value=3.9e+02 Score=22.63 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 016463 276 VKELDRSIQRREELKKEISHMEERVNVKE-----------QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTK 337 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 337 (389)
+...+..++....++.+|..-++.++.-. -...+++.+...|...-....++...|+..|..
T Consensus 45 ~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q 117 (218)
T 3fb2_A 45 VTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQ 117 (218)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666654333222211 123457777778877777777888888866553
No 432
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=20.41 E-value=2.7e+02 Score=22.46 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016463 347 EYAERLKS 354 (389)
Q Consensus 347 ~~~~~~~~ 354 (389)
|.++.++.
T Consensus 52 DisdkId~ 59 (129)
T 3f6n_A 52 DLTKLIND 59 (129)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 33333333
No 433
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.36 E-value=2.2e+02 Score=19.64 Aligned_cols=12 Identities=42% Similarity=0.393 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 016463 316 KLEEALINAKKL 327 (389)
Q Consensus 316 ~~e~~~~~~~~~ 327 (389)
.||.+.-+-+.|
T Consensus 32 ~lEeEqkARk~L 43 (56)
T 2w6b_A 32 SLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 434
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.35 E-value=1.1e+02 Score=29.99 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSKKLEEAL 321 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~ 321 (389)
++-.+.+.++.+|+.+..++..+.
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 435
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=20.09 E-value=1.2e+02 Score=20.46 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016463 298 ERVNVKEQLVLDLQKRSK 315 (389)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~ 315 (389)
+++.-.+.++.||+..+.
T Consensus 27 dEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 27 DEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555443
No 436
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.06 E-value=2.3e+02 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016463 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (389)
++.|.+++...+..+...+..++.|+..+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 444555666666666666666666655544
Done!