Query 016464
Match_columns 389
No_of_seqs 390 out of 2481
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 14:01:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 7.1E-34 2.4E-38 255.0 19.9 265 118-383 46-336 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 7.5E-33 2.5E-37 259.3 22.4 279 105-384 3-363 (457)
3 3now_A UNC-45 protein, SD10334 100.0 1.4E-32 4.8E-37 267.3 24.0 282 101-382 418-738 (810)
4 3nmz_A APC variant protein; pr 100.0 4.8E-33 1.6E-37 256.8 19.2 260 123-383 167-452 (458)
5 3ul1_B Importin subunit alpha- 100.0 4.4E-32 1.5E-36 257.9 23.9 284 99-382 95-388 (510)
6 1xm9_A Plakophilin 1; armadill 100.0 3.4E-32 1.2E-36 254.8 22.7 286 99-386 39-454 (457)
7 3l6x_A Catenin delta-1; cateni 100.0 7.8E-32 2.7E-36 254.0 25.0 280 103-383 47-386 (584)
8 3nmz_A APC variant protein; pr 100.0 2.9E-32 9.8E-37 251.6 20.4 283 99-381 65-408 (458)
9 3tpo_A Importin subunit alpha- 100.0 2.3E-31 7.8E-36 254.4 25.4 284 99-382 114-407 (529)
10 3now_A UNC-45 protein, SD10334 100.0 2.4E-31 8.1E-36 258.8 23.7 285 100-385 491-786 (810)
11 3l6x_A Catenin delta-1; cateni 100.0 8.5E-31 2.9E-35 246.9 23.4 286 99-386 85-481 (584)
12 4b8j_A Importin subunit alpha- 100.0 4E-30 1.4E-34 246.3 27.7 283 100-382 113-401 (528)
13 3tpo_A Importin subunit alpha- 100.0 1.7E-29 5.8E-34 241.4 28.6 285 100-384 158-452 (529)
14 3ul1_B Importin subunit alpha- 100.0 1.6E-29 5.5E-34 240.2 26.4 285 100-384 139-433 (510)
15 3nmw_A APC variant protein; AR 100.0 8.5E-31 2.9E-35 235.0 15.8 246 98-343 67-338 (354)
16 1wa5_B Importin alpha subunit; 100.0 3.2E-29 1.1E-33 240.1 26.6 283 100-382 126-413 (530)
17 4b8j_A Importin subunit alpha- 100.0 2E-28 7E-33 234.5 30.2 283 101-383 157-445 (528)
18 2jdq_A Importin alpha-1 subuni 100.0 7E-28 2.4E-32 226.1 30.3 283 101-384 104-393 (450)
19 4hxt_A De novo protein OR329; 100.0 1E-28 3.5E-33 213.4 22.1 238 104-341 2-243 (252)
20 2jdq_A Importin alpha-1 subuni 100.0 5.9E-28 2E-32 226.7 28.2 279 104-382 64-348 (450)
21 4hxt_A De novo protein OR329; 100.0 1.1E-28 3.7E-33 213.3 21.1 239 146-384 2-244 (252)
22 1wa5_B Importin alpha subunit; 100.0 1.4E-27 4.8E-32 228.7 29.6 284 101-384 170-460 (530)
23 4db8_A Armadillo-repeat protei 100.0 1E-28 3.5E-33 213.6 17.6 236 104-339 12-251 (252)
24 4db8_A Armadillo-repeat protei 100.0 3.3E-28 1.1E-32 210.4 18.2 236 146-381 12-251 (252)
25 1jdh_A Beta-catenin; beta-cate 99.9 3.6E-26 1.2E-30 219.0 23.2 280 102-382 15-340 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 4.4E-26 1.5E-30 223.1 23.2 280 101-381 11-336 (644)
27 1jdh_A Beta-catenin; beta-cate 99.9 3.7E-26 1.3E-30 218.9 21.6 282 99-382 96-386 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 8.4E-26 2.9E-30 221.1 22.8 282 100-383 94-384 (644)
29 2z6g_A B-catenin; FULL-length, 99.9 2.8E-25 9.4E-30 220.9 21.8 279 100-382 356-664 (780)
30 3opb_A SWI5-dependent HO expre 99.9 3.8E-25 1.3E-29 211.3 20.1 282 101-382 373-729 (778)
31 4db6_A Armadillo repeat protei 99.9 1.1E-24 3.9E-29 182.7 17.7 197 102-298 10-209 (210)
32 2z6g_A B-catenin; FULL-length, 99.9 2.2E-24 7.4E-29 214.5 22.7 276 103-381 191-472 (780)
33 4db6_A Armadillo repeat protei 99.9 2.9E-24 9.9E-29 180.3 19.5 197 185-381 10-209 (210)
34 3tt9_A Plakophilin-2; cell adh 99.9 5.5E-25 1.9E-29 183.9 14.8 194 105-299 9-230 (233)
35 3opb_A SWI5-dependent HO expre 99.9 9.8E-23 3.4E-27 194.8 21.1 278 103-382 333-684 (778)
36 3tt9_A Plakophilin-2; cell adh 99.9 4.4E-23 1.5E-27 172.4 14.2 192 188-380 9-228 (233)
37 1xqr_A HSPBP1 protein; armadil 99.9 2.8E-21 9.5E-26 168.8 21.9 198 101-299 25-239 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 3.6E-21 1.2E-25 168.1 18.2 183 200-382 53-239 (296)
39 2kre_A Ubiquitin conjugation f 99.8 1.3E-20 4.4E-25 135.5 7.7 76 5-81 23-98 (100)
40 1wgm_A Ubiquitin conjugation f 99.8 3.5E-20 1.2E-24 132.7 8.8 76 5-81 16-92 (98)
41 2kr4_A Ubiquitin conjugation f 99.8 1.1E-20 3.8E-25 132.0 5.9 75 5-80 8-82 (85)
42 1t1h_A Gspef-atpub14, armadill 99.8 3.5E-20 1.2E-24 128.4 6.4 76 5-80 2-77 (78)
43 2f42_A STIP1 homology and U-bo 99.8 1.2E-19 4E-24 143.3 6.6 77 5-81 100-176 (179)
44 2yu4_A E3 SUMO-protein ligase 99.7 3.2E-18 1.1E-22 122.2 5.4 74 7-80 3-85 (94)
45 2c2l_A CHIP, carboxy terminus 99.7 5.8E-18 2E-22 148.3 6.7 78 4-81 201-278 (281)
46 3ztg_A E3 ubiquitin-protein li 99.7 2.6E-17 9E-22 117.8 8.5 79 3-81 5-86 (92)
47 3grl_A General vesicular trans 99.7 5.2E-15 1.8E-19 138.3 23.0 282 101-382 57-395 (651)
48 3grl_A General vesicular trans 99.7 8.9E-15 3.1E-19 136.7 21.8 277 102-382 19-343 (651)
49 3fl2_A E3 ubiquitin-protein li 99.6 1.7E-16 6E-21 120.1 4.3 70 8-77 49-119 (124)
50 1oyz_A Hypothetical protein YI 99.6 2.5E-14 8.4E-19 125.1 17.9 228 102-380 21-249 (280)
51 1z6u_A NP95-like ring finger p 99.6 7E-16 2.4E-20 120.0 4.3 69 8-76 75-144 (150)
52 3ltm_A Alpha-REP4; protein eng 99.6 1.3E-13 4.3E-18 115.3 18.0 191 101-342 16-206 (211)
53 3ltm_A Alpha-REP4; protein eng 99.6 1.8E-13 6.1E-18 114.3 18.1 189 145-384 18-206 (211)
54 3ltj_A Alpharep-4; protein eng 99.6 4E-13 1.4E-17 111.2 19.2 187 101-338 11-197 (201)
55 3lrq_A E3 ubiquitin-protein li 99.5 1.2E-15 4E-20 110.5 2.6 70 8-77 19-89 (100)
56 3ltj_A Alpharep-4; protein eng 99.5 6.8E-13 2.3E-17 109.9 18.6 185 146-381 14-198 (201)
57 2ecy_A TNF receptor-associated 99.5 1E-14 3.4E-19 97.0 5.9 56 5-60 9-64 (66)
58 2egp_A Tripartite motif-contai 99.5 4.1E-16 1.4E-20 108.2 -1.4 64 4-67 5-74 (79)
59 2y43_A E3 ubiquitin-protein li 99.5 3.7E-15 1.3E-19 108.0 3.5 69 9-78 20-89 (99)
60 4fdd_A Transportin-1; heat rep 99.5 2.1E-13 7.2E-18 137.7 17.0 275 103-382 127-430 (852)
61 2ecw_A Tripartite motif-contai 99.5 3.6E-15 1.2E-19 105.1 2.1 63 5-67 13-80 (85)
62 3htk_C E3 SUMO-protein ligase 99.5 7.7E-15 2.6E-19 121.1 4.3 70 8-77 178-251 (267)
63 3l11_A E3 ubiquitin-protein li 99.5 3.4E-15 1.2E-19 111.4 1.8 70 6-75 10-86 (115)
64 2yur_A Retinoblastoma-binding 99.5 1.7E-14 5.9E-19 98.1 5.1 54 4-57 8-63 (74)
65 2ckl_A Polycomb group ring fin 99.5 1.1E-14 3.7E-19 107.3 4.2 67 7-74 11-82 (108)
66 2csy_A Zinc finger protein 183 99.5 1.3E-14 4.5E-19 100.8 4.4 61 5-67 9-69 (81)
67 3hct_A TNF receptor-associated 99.5 8.1E-15 2.8E-19 109.7 3.5 69 6-74 13-81 (118)
68 4fdd_A Transportin-1; heat rep 99.5 9.7E-14 3.3E-18 140.2 12.5 275 103-382 173-472 (852)
69 2djb_A Polycomb group ring fin 99.5 3.4E-14 1.2E-18 96.2 5.9 59 4-63 8-67 (72)
70 2ecv_A Tripartite motif-contai 99.5 5.7E-15 2E-19 104.1 1.7 62 6-67 14-80 (85)
71 1jm7_B BARD1, BRCA1-associated 99.5 1E-14 3.4E-19 109.0 2.6 67 8-77 19-86 (117)
72 2ysl_A Tripartite motif-contai 99.5 5.3E-14 1.8E-18 95.7 6.0 55 6-60 15-71 (73)
73 1oyz_A Hypothetical protein YI 99.5 2.7E-12 9.3E-17 112.1 17.9 201 143-381 20-221 (280)
74 2ysj_A Tripartite motif-contai 99.5 7.6E-14 2.6E-18 91.8 5.7 47 6-52 15-63 (63)
75 2ckl_B Ubiquitin ligase protei 99.5 2E-14 6.8E-19 114.5 3.3 70 7-76 50-121 (165)
76 4ayc_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 109.3 3.8 64 9-75 51-114 (138)
77 2bay_A PRE-mRNA splicing facto 99.4 2.5E-14 8.5E-19 92.2 2.4 54 11-65 3-57 (61)
78 1g25_A CDK-activating kinase a 99.4 7.6E-14 2.6E-18 92.4 4.5 54 10-63 2-60 (65)
79 1e4u_A Transcriptional repress 99.4 2E-13 6.8E-18 92.9 6.3 61 1-61 1-65 (78)
80 1jm7_A BRCA1, breast cancer ty 99.4 9.7E-14 3.3E-18 103.2 4.4 66 9-74 19-86 (112)
81 3knv_A TNF receptor-associated 99.4 2.1E-14 7.3E-19 110.2 0.2 68 7-74 27-103 (141)
82 2ecj_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 87.3 5.4 48 5-52 9-58 (58)
83 1ibr_B P95, importin beta-1 su 99.4 1.9E-12 6.6E-17 121.2 12.4 276 103-383 127-439 (462)
84 2ct2_A Tripartite motif protei 99.4 5.9E-13 2E-17 94.2 6.3 56 4-59 8-69 (88)
85 3hcs_A TNF receptor-associated 99.4 1.7E-13 5.8E-18 109.8 3.5 69 6-74 13-81 (170)
86 1rmd_A RAG1; V(D)J recombinati 99.4 1.1E-13 3.6E-18 103.4 2.1 67 8-74 20-87 (116)
87 3ng2_A RNF4, snurf, ring finge 99.4 2.8E-13 9.6E-18 91.6 3.7 59 5-64 4-69 (71)
88 2vgl_B AP-2 complex subunit be 99.4 6.8E-11 2.3E-15 114.2 21.7 266 103-381 120-419 (591)
89 1b3u_A Protein (protein phosph 99.4 1.5E-11 5.2E-16 118.8 17.1 228 103-339 163-392 (588)
90 1b3u_A Protein (protein phosph 99.4 2.3E-11 8E-16 117.5 18.3 266 103-380 86-352 (588)
91 2d8t_A Dactylidin, ring finger 99.4 4.1E-13 1.4E-17 90.5 4.0 52 6-58 10-61 (71)
92 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 87.8 4.1 53 4-57 8-67 (69)
93 2vgl_B AP-2 complex subunit be 99.3 3.2E-11 1.1E-15 116.5 14.2 259 105-382 50-312 (591)
94 2ect_A Ring finger protein 126 99.3 4.7E-12 1.6E-16 87.1 5.0 59 5-64 9-70 (78)
95 2xeu_A Ring finger protein 4; 99.3 1.5E-12 5E-17 86.1 2.2 53 10-63 2-61 (64)
96 4gmo_A Putative uncharacterize 99.2 2.4E-10 8E-15 112.0 16.5 193 188-381 35-258 (684)
97 1bor_A Transcription factor PM 99.2 6.3E-12 2.2E-16 80.0 2.9 47 9-59 4-50 (56)
98 2ecm_A Ring finger and CHY zin 99.2 1.3E-11 4.4E-16 78.6 3.7 48 9-57 3-54 (55)
99 1qgr_A Protein (importin beta 99.2 1.3E-09 4.5E-14 110.3 20.5 273 104-382 128-438 (876)
100 2kiz_A E3 ubiquitin-protein li 99.2 3.5E-11 1.2E-15 80.5 5.9 53 6-59 9-64 (69)
101 2bpt_A Importin beta-1 subunit 99.2 3.1E-10 1.1E-14 114.7 15.4 273 104-382 369-669 (861)
102 2ecn_A Ring finger protein 141 99.2 6.3E-12 2.2E-16 84.5 2.1 53 5-59 9-61 (70)
103 1chc_A Equine herpes virus-1 r 99.2 1.6E-11 5.4E-16 82.0 3.8 48 9-57 3-51 (68)
104 1w63_A Adapter-related protein 99.2 2E-09 6.8E-14 104.3 20.1 251 104-381 142-414 (618)
105 3m62_A Ubiquitin conjugation f 99.2 1.7E-11 5.9E-16 119.1 5.5 75 6-81 886-961 (968)
106 2ep4_A Ring finger protein 24; 99.2 4E-11 1.4E-15 81.5 5.6 53 5-58 9-64 (74)
107 2l0b_A E3 ubiquitin-protein li 99.2 2.4E-11 8.2E-16 86.0 4.6 51 7-58 36-89 (91)
108 1w63_A Adapter-related protein 99.2 1.7E-09 5.7E-14 104.9 18.8 254 104-383 107-381 (618)
109 1iym_A EL5; ring-H2 finger, ub 99.2 2.1E-11 7.3E-16 77.6 3.7 48 8-56 2-53 (55)
110 1x4j_A Ring finger protein 38; 99.1 2.9E-11 9.9E-16 82.4 3.6 50 8-58 20-72 (75)
111 4gmo_A Putative uncharacterize 99.1 3.2E-10 1.1E-14 111.1 11.7 191 148-338 36-257 (684)
112 2bpt_A Importin beta-1 subunit 99.1 3.2E-09 1.1E-13 107.3 18.2 276 103-382 133-441 (861)
113 4ap4_A E3 ubiquitin ligase RNF 99.1 3E-11 1E-15 92.7 2.4 53 8-61 4-63 (133)
114 1qgr_A Protein (importin beta 99.1 3.5E-09 1.2E-13 107.2 17.3 275 103-383 171-481 (876)
115 1v87_A Deltex protein 2; ring- 99.0 1.5E-10 5E-15 86.0 4.7 50 9-58 23-94 (114)
116 3b2a_A TON_1937, putative unch 99.0 1.6E-08 5.5E-13 81.7 16.7 190 102-301 31-221 (265)
117 4ic3_A E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 81.2 0.8 45 9-58 22-67 (74)
118 1ibr_B P95, importin beta-1 su 99.0 7.6E-09 2.6E-13 96.7 14.8 234 103-340 171-438 (462)
119 1u6g_C TIP120 protein, CAND1; 99.0 5.7E-10 2E-14 117.1 7.8 272 104-382 6-285 (1230)
120 2vgl_A Adaptor protein complex 99.0 1.3E-07 4.4E-12 91.5 23.0 257 105-384 112-401 (621)
121 2y1n_A E3 ubiquitin-protein li 99.0 3.4E-10 1.2E-14 100.0 4.2 50 10-59 331-380 (389)
122 2ecl_A Ring-box protein 2; RNF 98.9 1.1E-09 3.8E-14 75.4 3.8 48 10-58 14-76 (81)
123 3b2a_A TON_1937, putative unch 98.9 6.3E-09 2.2E-13 84.0 8.2 222 146-380 33-260 (265)
124 2vgl_A Adaptor protein complex 98.9 2.1E-07 7.3E-12 89.9 20.4 255 104-381 146-433 (621)
125 2ecg_A Baculoviral IAP repeat- 98.9 1.1E-09 3.7E-14 74.3 3.1 44 10-58 24-68 (75)
126 4ap4_A E3 ubiquitin ligase RNF 98.8 4.4E-10 1.5E-14 86.1 1.0 54 9-63 70-130 (133)
127 1u6g_C TIP120 protein, CAND1; 98.8 1.1E-08 3.6E-13 107.5 11.4 232 102-340 46-285 (1230)
128 2qk2_A LP04448P; mini spindles 98.8 1.4E-08 4.8E-13 86.3 10.1 182 108-299 19-206 (242)
129 1ho8_A Vacuolar ATP synthase s 98.8 1.6E-07 5.4E-12 85.1 16.6 230 151-381 172-476 (480)
130 2vje_A E3 ubiquitin-protein li 98.8 1.8E-09 6.1E-14 70.5 2.9 48 9-57 6-56 (64)
131 2qk2_A LP04448P; mini spindles 98.8 2.1E-08 7.3E-13 85.2 9.3 185 190-382 18-206 (242)
132 1wim_A KIAA0161 protein; ring 98.8 1.3E-09 4.4E-14 77.6 1.0 47 9-55 3-61 (94)
133 2vje_B MDM4 protein; proto-onc 98.8 3.2E-09 1.1E-13 69.0 2.6 48 9-57 5-55 (63)
134 3dpl_R Ring-box protein 1; ubi 98.7 7.1E-09 2.4E-13 74.7 4.4 47 10-57 36-100 (106)
135 1te4_A Conserved protein MTH18 98.7 1.9E-09 6.7E-14 82.2 0.0 121 103-255 11-131 (131)
136 2yho_A E3 ubiquitin-protein li 98.7 5.1E-09 1.7E-13 71.4 1.7 45 9-58 16-61 (79)
137 2ea5_A Cell growth regulator w 98.6 2.9E-08 1E-12 65.4 4.5 46 8-58 12-58 (68)
138 1te4_A Conserved protein MTH18 98.6 5.5E-09 1.9E-13 79.7 1.1 120 145-295 11-130 (131)
139 2qk1_A Protein STU2; STU2P, XM 98.6 1.5E-07 5.2E-12 79.9 10.0 189 109-298 21-220 (249)
140 3tjz_B Coatomer subunit gamma; 98.6 1.3E-06 4.5E-11 77.3 15.6 250 104-382 68-317 (355)
141 2d8s_A Cellular modulator of i 98.6 6.6E-08 2.3E-12 65.7 5.5 54 5-58 9-70 (80)
142 3t6p_A Baculoviral IAP repeat- 98.6 4.4E-09 1.5E-13 92.7 -0.5 44 9-57 293-337 (345)
143 2qk1_A Protein STU2; STU2P, XM 98.6 3.4E-07 1.2E-11 77.8 11.0 190 191-381 20-220 (249)
144 3tjz_B Coatomer subunit gamma; 98.5 7.7E-07 2.6E-11 78.8 12.5 242 104-376 104-348 (355)
145 2db0_A 253AA long hypothetical 98.5 2.7E-05 9.3E-10 60.5 17.3 217 101-340 29-247 (253)
146 4a0k_B E3 ubiquitin-protein li 98.4 3.3E-08 1.1E-12 72.2 0.3 46 11-57 48-111 (117)
147 3dad_A FH1/FH2 domain-containi 98.4 8.2E-06 2.8E-10 70.4 15.0 183 189-371 120-326 (339)
148 4ady_A RPN2, 26S proteasome re 98.4 5.6E-05 1.9E-09 74.7 22.5 234 105-380 430-675 (963)
149 2db0_A 253AA long hypothetical 98.4 4.6E-05 1.6E-09 59.2 16.8 214 145-380 31-245 (253)
150 2iw3_A Elongation factor 3A; a 98.4 4.8E-05 1.6E-09 76.0 21.0 269 103-385 53-328 (986)
151 4ady_A RPN2, 26S proteasome re 98.3 0.0003 1E-08 69.6 24.2 241 102-379 470-717 (963)
152 1ho8_A Vacuolar ATP synthase s 98.2 3.2E-05 1.1E-09 70.2 15.1 230 109-340 172-477 (480)
153 3dad_A FH1/FH2 domain-containi 98.2 3.1E-05 1.1E-09 66.9 12.7 147 233-379 123-284 (339)
154 2iw3_A Elongation factor 3A; a 98.0 6.1E-05 2.1E-09 75.2 13.0 261 104-382 14-281 (986)
155 3vk6_A E3 ubiquitin-protein li 98.0 4.4E-06 1.5E-10 57.5 3.4 45 13-57 3-48 (101)
156 2ct0_A Non-SMC element 1 homol 97.9 1.1E-05 3.8E-10 53.4 4.7 47 11-57 15-63 (74)
157 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00019 6.5E-09 65.9 12.5 239 105-377 175-432 (800)
158 1wa5_C Importin alpha RE-expor 97.8 0.00039 1.3E-08 71.0 15.9 254 120-382 377-671 (960)
159 1vyx_A ORF K3, K3RING; zinc-bi 97.8 2.3E-05 7.7E-10 49.8 4.1 48 10-57 5-58 (60)
160 2of3_A ZYG-9; multifunctional 97.6 0.0014 4.8E-08 55.3 12.8 176 108-298 50-236 (266)
161 4ffb_C Protein STU2; tubulin f 97.5 0.001 3.4E-08 57.4 11.9 186 109-299 14-213 (278)
162 1upk_A MO25 protein; transfera 97.5 0.026 8.9E-07 48.7 19.9 240 141-382 73-333 (341)
163 2fv2_A RCD1 required for cell 97.4 0.0036 1.2E-07 51.6 13.4 226 106-337 5-266 (268)
164 1wa5_C Importin alpha RE-expor 97.2 0.0029 9.9E-08 64.6 13.0 218 115-338 416-669 (960)
165 2fv2_A RCD1 required for cell 97.2 0.022 7.4E-07 47.1 15.1 144 241-384 14-177 (268)
166 4ffb_C Protein STU2; tubulin f 97.2 0.0024 8.2E-08 54.9 10.2 185 192-382 14-213 (278)
167 2x1g_F Cadmus; transport prote 97.2 0.025 8.6E-07 57.8 19.3 213 158-382 476-723 (971)
168 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00012 4E-09 63.0 1.5 48 10-57 307-372 (381)
169 1lrv_A LRV, leucine-rich repea 97.1 7.1E-05 2.4E-09 62.8 -0.3 45 313-376 197-241 (244)
170 1upk_A MO25 protein; transfera 96.9 0.02 7E-07 49.4 13.3 198 102-301 76-286 (341)
171 2x1g_F Cadmus; transport prote 96.8 0.12 4.2E-06 52.7 21.1 132 199-340 476-616 (971)
172 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0014 4.8E-08 60.3 5.8 186 118-334 242-431 (800)
173 2x19_B Importin-13; nuclear tr 96.8 0.13 4.3E-06 52.5 20.8 215 156-381 459-714 (963)
174 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00063 2.2E-08 48.5 2.4 34 10-43 2-38 (101)
175 3ebb_A Phospholipase A2-activa 96.6 0.013 4.4E-07 50.7 10.2 137 241-377 161-302 (304)
176 2of3_A ZYG-9; multifunctional 96.6 0.025 8.4E-07 47.7 11.4 179 190-380 49-235 (266)
177 2x19_B Importin-13; nuclear tr 96.5 0.13 4.6E-06 52.3 18.8 175 197-381 459-646 (963)
178 3u0r_A Apoptosis inhibitor 5; 96.0 0.3 1E-05 44.4 15.3 130 106-254 31-160 (507)
179 3nw0_A Non-structural maintena 95.9 0.0082 2.8E-07 49.9 4.8 48 11-58 180-229 (238)
180 1lrv_A LRV, leucine-rich repea 95.9 0.0008 2.7E-08 56.3 -1.4 156 109-334 79-241 (244)
181 3ibv_A Exportin-T; karyopherin 95.8 0.68 2.3E-05 47.2 19.3 273 104-382 40-362 (980)
182 3ebb_A Phospholipase A2-activa 95.8 0.15 5E-06 44.1 12.3 159 147-308 104-273 (304)
183 3i2d_A E3 SUMO-protein ligase 95.5 0.012 4E-07 51.6 4.6 62 12-73 250-315 (371)
184 4hat_C Exportin-1; heat repeat 95.0 0.098 3.4E-06 53.4 10.0 142 116-260 465-621 (1023)
185 3l9t_A Putative uncharacterize 94.9 0.25 8.4E-06 40.5 10.3 145 188-351 72-219 (240)
186 4hat_C Exportin-1; heat repeat 94.9 0.19 6.6E-06 51.3 11.9 139 158-299 465-619 (1023)
187 4fo9_A E3 SUMO-protein ligase 94.9 0.028 9.7E-07 49.0 4.9 63 11-73 215-281 (360)
188 2f31_A Diaphanous protein homo 94.8 0.67 2.3E-05 38.3 13.1 141 138-280 36-209 (233)
189 3c2g_A SYS-1 protein; beta-cat 94.8 1.3 4.4E-05 38.5 14.7 116 121-238 260-377 (619)
190 3ibv_A Exportin-T; karyopherin 94.7 1.3 4.3E-05 45.2 17.1 242 117-379 21-304 (980)
191 3u0r_A Apoptosis inhibitor 5; 94.7 0.22 7.6E-06 45.2 10.2 122 197-336 38-160 (507)
192 1lsh_A Lipovitellin (LV-1N, LV 94.6 0.7 2.4E-05 47.4 15.1 201 105-336 312-540 (1056)
193 3eg5_B Protein diaphanous homo 94.6 0.63 2.2E-05 41.7 13.1 144 227-370 108-283 (383)
194 2f31_A Diaphanous protein homo 94.2 2 6.7E-05 35.4 16.1 147 201-376 68-223 (233)
195 3eg5_B Protein diaphanous homo 94.0 2 6.9E-05 38.4 15.2 172 107-280 69-275 (383)
196 1lsh_A Lipovitellin (LV-1N, LV 93.8 1.7 5.9E-05 44.6 16.0 169 147-341 392-578 (1056)
197 3a6p_A Exportin-5; exportin-5, 93.8 7 0.00024 40.8 20.8 255 114-379 57-378 (1204)
198 3l9t_A Putative uncharacterize 93.6 0.65 2.2E-05 38.0 10.0 143 106-267 73-218 (240)
199 3m1i_C Exportin-1; heat repeat 93.5 1.3 4.5E-05 45.5 14.8 100 240-340 465-570 (1049)
200 3m1i_C Exportin-1; heat repeat 93.4 0.83 2.9E-05 47.0 13.1 217 103-340 15-264 (1049)
201 2bnx_A Diaphanous protein homo 92.9 1.6 5.4E-05 39.1 12.5 131 242-372 72-223 (386)
202 1weo_A Cellulose synthase, cat 92.8 0.18 6.3E-06 33.6 4.6 48 10-57 15-69 (93)
203 3qml_C Protein SLS1, nucleotid 92.2 2.9 9.8E-05 35.6 12.3 146 188-338 23-188 (315)
204 3c2g_A SYS-1 protein; beta-cat 92.2 4.4 0.00015 35.3 13.4 128 250-378 265-400 (619)
205 2bnx_A Diaphanous protein homo 92.2 1.6 5.4E-05 39.1 11.6 124 201-325 72-218 (386)
206 2ko5_A Ring finger protein Z; 90.8 0.22 7.6E-06 33.6 3.3 50 8-59 25-74 (99)
207 3a6p_A Exportin-5; exportin-5, 90.6 7.4 0.00025 40.7 16.2 242 117-380 26-330 (1204)
208 3gjx_A Exportin-1; transport, 90.4 2.4 8.3E-05 43.4 12.1 220 102-340 26-276 (1073)
209 3ldz_A STAM-1, signal transduc 90.0 1.2 4.2E-05 33.3 7.4 71 311-381 43-114 (140)
210 1x5b_A Signal transducing adap 89.6 1.4 4.8E-05 34.0 7.6 71 311-381 53-125 (163)
211 1x5b_A Signal transducing adap 89.3 1.6 5.4E-05 33.7 7.7 73 102-174 50-124 (163)
212 1mhq_A ADP-ribosylation factor 88.8 1.9 6.4E-05 32.6 7.7 73 102-174 36-115 (148)
213 3qml_C Protein SLS1, nucleotid 87.6 9.8 0.00033 32.4 11.8 107 104-215 71-188 (315)
214 3ldz_A STAM-1, signal transduc 87.3 2.2 7.6E-05 31.9 7.2 73 102-174 40-113 (140)
215 1juq_A ADP-ribosylation factor 87.2 2 7E-05 33.4 7.2 73 102-174 48-127 (171)
216 3g2s_A C-terminal fragment of 86.9 2.5 8.5E-05 32.0 7.3 71 311-381 49-126 (149)
217 1juq_A ADP-ribosylation factor 86.8 1.8 6E-05 33.7 6.5 71 311-381 51-128 (171)
218 1mhq_A ADP-ribosylation factor 86.4 1.7 5.7E-05 32.9 6.1 71 311-381 39-116 (148)
219 3zyq_A Hepatocyte growth facto 86.1 2.5 8.4E-05 34.6 7.4 71 311-381 46-118 (226)
220 3mjh_B Early endosome antigen 84.7 0.18 6.1E-06 27.2 -0.1 16 10-25 4-19 (34)
221 2cs3_A Protein C14ORF4, MY039 84.4 1.4 4.9E-05 28.6 4.0 44 8-51 12-63 (93)
222 3gjx_A Exportin-1; transport, 83.4 43 0.0015 34.4 16.5 214 147-381 29-275 (1073)
223 2k5c_A Uncharacterized protein 82.7 0.27 9.3E-06 32.0 0.2 53 12-64 9-69 (95)
224 1dvp_A HRS, hepatocyte growth 82.6 4.2 0.00014 33.1 7.4 71 311-381 43-115 (220)
225 3g2s_A C-terminal fragment of 82.3 6.2 0.00021 29.8 7.6 73 102-174 46-125 (149)
226 3gae_A Protein DOA1; UFD3, CDC 82.3 1.3 4.3E-05 37.1 4.2 130 239-374 101-251 (253)
227 3o2t_A Symplekin; heat repeat, 79.9 32 0.0011 30.5 12.7 129 119-256 40-182 (386)
228 3zyq_A Hepatocyte growth facto 79.7 14 0.00048 30.1 9.5 73 102-174 43-117 (226)
229 3gae_A Protein DOA1; UFD3, CDC 79.0 7.3 0.00025 32.4 7.8 130 163-301 71-220 (253)
230 1dvp_A HRS, hepatocyte growth 78.4 5.9 0.0002 32.2 6.9 73 102-174 40-114 (220)
231 3pst_A Protein DOA1; protein d 76.5 14 0.00047 33.2 9.1 130 239-374 273-423 (425)
232 2jvx_A NF-kappa-B essential mo 76.3 0.68 2.3E-05 23.7 0.4 18 9-26 1-18 (28)
233 1wil_A KIAA1045 protein; ring 75.6 6 0.00021 26.2 4.8 37 5-41 9-47 (89)
234 1elk_A Target of MYB1; superhe 74.2 13 0.00046 28.2 7.5 73 102-174 51-129 (157)
235 2o35_A Hypothetical protein DU 73.7 1.3 4.5E-05 30.2 1.4 13 32-44 42-54 (105)
236 2jne_A Hypothetical protein YF 73.5 0.11 3.9E-06 35.3 -3.8 40 12-57 33-72 (101)
237 3gs3_A Symplekin, LD45768P; he 73.4 38 0.0013 28.1 15.4 143 105-256 16-172 (257)
238 3fyb_A Protein of unknown func 73.4 1.3 4.6E-05 30.1 1.4 13 32-44 41-53 (104)
239 1elk_A Target of MYB1; superhe 73.3 11 0.00038 28.7 6.8 71 311-381 54-130 (157)
240 3vhs_A ATPase wrnip1; zinc fin 72.5 0.89 3E-05 22.2 0.3 11 12-22 7-17 (29)
241 3l3f_X Protein DOA1, DOA1/UFD3 71.2 11 0.00037 33.2 7.0 131 239-374 210-360 (362)
242 1m3v_A FLIN4, fusion of the LI 70.6 2.8 9.6E-05 30.4 2.8 49 12-61 33-84 (122)
243 3o2t_A Symplekin; heat repeat, 70.3 43 0.0015 29.7 10.7 105 103-214 62-181 (386)
244 6rxn_A Rubredoxin; electron tr 69.5 1.5 5.1E-05 25.5 0.8 13 7-19 26-38 (46)
245 1vdy_A Hypothetical protein (R 69.5 8.6 0.00029 28.6 5.2 74 311-384 50-133 (140)
246 1e8j_A Rubredoxin; iron-sulfur 68.5 2.2 7.6E-05 25.6 1.5 14 6-19 31-44 (52)
247 3gs3_A Symplekin, LD45768P; he 65.7 57 0.002 27.0 11.6 107 103-214 52-171 (257)
248 4rxn_A Rubredoxin; electron tr 65.3 2 6.8E-05 26.0 0.8 14 7-20 32-45 (54)
249 4atg_A TAF6; transcription, TF 65.1 17 0.00059 28.8 6.4 129 228-363 40-179 (196)
250 2xqn_T Testin, TESS; metal-bin 64.4 5.6 0.00019 28.9 3.4 45 11-58 30-75 (126)
251 2kn9_A Rubredoxin; metalloprot 61.9 3.3 0.00011 27.4 1.4 14 6-19 55-68 (81)
252 1yk4_A Rubredoxin, RD; electro 61.5 2.6 8.8E-05 25.3 0.8 13 7-19 31-43 (52)
253 2v3b_B Rubredoxin 2, rubredoxi 60.8 2.7 9.2E-05 25.6 0.8 13 7-19 32-44 (55)
254 2jrp_A Putative cytoplasmic pr 60.5 0.44 1.5E-05 31.6 -2.9 40 12-57 3-42 (81)
255 2lri_C Autoimmune regulator; Z 58.4 11 0.00038 23.8 3.4 46 8-55 9-59 (66)
256 3pst_A Protein DOA1; protein d 57.3 16 0.00053 32.9 5.4 101 157-260 273-392 (425)
257 1dx8_A Rubredoxin; electron tr 55.7 3.6 0.00012 26.4 0.8 15 6-20 35-49 (70)
258 2xjy_A Rhombotin-2; oncoprotei 55.1 8.1 0.00028 28.2 2.8 48 10-58 28-78 (131)
259 2xpp_A IWS1, ECU08_0440; trans 54.6 64 0.0022 24.0 7.7 82 254-338 46-135 (145)
260 2rgt_A Fusion of LIM/homeobox 54.4 17 0.00057 28.0 4.7 46 10-58 32-77 (169)
261 1x61_A Thyroid receptor intera 54.0 20 0.00067 22.7 4.3 32 12-43 34-66 (72)
262 2jtn_A LIM domain-binding prot 52.3 13 0.00043 29.1 3.7 47 10-59 86-132 (182)
263 2kre_A Ubiquitin conjugation f 52.2 11 0.00037 26.1 2.9 34 10-45 62-95 (100)
264 1z60_A TFIIH basal transcripti 51.1 13 0.00044 22.9 2.7 39 13-52 17-58 (59)
265 1s24_A Rubredoxin 2; electron 51.0 5 0.00017 27.0 0.9 15 6-20 63-77 (87)
266 4atg_A TAF6; transcription, TF 50.7 47 0.0016 26.2 6.7 110 188-297 41-161 (196)
267 3uk3_C Zinc finger protein 217 50.4 8.2 0.00028 22.8 1.9 41 10-57 3-43 (57)
268 1vdy_A Hypothetical protein (R 47.3 43 0.0015 24.8 5.6 43 103-145 48-91 (140)
269 2xpp_A IWS1, ECU08_0440; trans 47.2 86 0.0029 23.3 10.4 83 295-381 46-136 (145)
270 2l4z_A DNA endonuclease RBBP8, 46.9 16 0.00053 26.4 3.2 38 11-57 61-99 (123)
271 2epq_A POZ-, at HOOK-, and zin 46.4 25 0.00086 19.2 3.5 15 10-24 9-23 (45)
272 2d8x_A Protein pinch; LIM doma 46.1 16 0.00056 22.9 2.9 32 12-43 32-64 (70)
273 4g9i_A Hydrogenase maturation 45.7 9.7 0.00033 37.4 2.4 50 8-57 103-189 (772)
274 1rut_X Flinc4, fusion protein 45.3 5.7 0.00019 31.3 0.6 47 11-58 32-81 (188)
275 3nfq_A Transcription factor IW 44.9 1E+02 0.0035 23.6 8.4 81 296-380 62-150 (170)
276 3ttc_A HYPF, transcriptional r 44.0 9.6 0.00033 36.5 2.1 50 7-56 13-99 (657)
277 2ct7_A Ring finger protein 31; 44.0 3.4 0.00012 27.8 -0.8 29 13-41 27-61 (86)
278 1vfy_A Phosphatidylinositol-3- 43.6 14 0.00047 23.8 2.2 32 8-39 8-43 (73)
279 3nfq_A Transcription factor IW 43.4 1.1E+02 0.0037 23.5 7.4 81 256-339 63-151 (170)
280 2fiy_A Protein FDHE homolog; F 43.2 2.2 7.6E-05 36.7 -2.2 46 9-55 180-231 (309)
281 1wii_A Hypothetical UPF0222 pr 42.9 14 0.00047 24.8 2.1 15 6-20 18-32 (85)
282 4gzn_C ZFP-57, zinc finger pro 42.9 15 0.00051 22.5 2.2 41 10-57 3-43 (60)
283 1iml_A CRIP, cysteine rich int 42.7 20 0.00069 23.0 3.0 44 10-56 26-71 (76)
284 1wig_A KIAA1808 protein; LIM d 42.6 12 0.00041 24.0 1.8 30 12-41 32-63 (73)
285 2epr_A POZ-, at HOOK-, and zin 41.8 39 0.0013 18.8 3.9 35 8-53 9-47 (48)
286 2jmo_A Parkin; IBR, E3 ligase, 41.6 3 0.0001 27.6 -1.3 33 11-43 25-70 (80)
287 2cup_A Skeletal muscle LIM-pro 41.4 14 0.00048 25.4 2.1 45 11-58 33-78 (101)
288 2d8z_A Four and A half LIM dom 41.0 24 0.00082 22.1 3.1 31 12-42 32-63 (70)
289 2lv2_A Insulinoma-associated p 40.4 15 0.00051 24.5 2.1 37 10-57 27-67 (85)
290 2eps_A POZ-, at HOOK-, and zin 40.1 53 0.0018 18.9 4.9 39 8-57 9-52 (54)
291 2jr6_A UPF0434 protein NMA0874 39.7 15 0.0005 23.4 1.8 18 5-22 2-19 (68)
292 2ytm_A Zinc finger protein 28 39.4 31 0.0011 18.9 3.2 15 10-24 11-25 (46)
293 2dar_A PDZ and LIM domain prot 39.2 25 0.00087 23.4 3.1 19 13-31 27-45 (90)
294 2cor_A Pinch protein; LIM doma 38.7 12 0.00041 24.5 1.3 37 12-57 16-52 (79)
295 2eov_A Zinc finger protein 484 38.7 48 0.0016 18.0 4.1 15 10-24 11-25 (46)
296 2eq4_A Zinc finger protein 224 38.6 48 0.0016 18.0 4.0 15 10-24 11-25 (46)
297 2ytn_A Zinc finger protein 347 38.5 48 0.0016 18.0 3.9 16 9-24 10-25 (46)
298 2cur_A Skeletal muscle LIM-pro 38.4 31 0.0011 21.5 3.3 32 12-43 32-64 (69)
299 2eop_A Zinc finger protein 268 38.2 49 0.0017 17.9 4.0 15 10-24 11-25 (46)
300 3s4w_B Protein FACD2, fanconi 38.1 3.8E+02 0.013 28.2 16.5 258 103-380 156-466 (1323)
301 1vsy_5 Proteasome activator BL 38.0 1.8E+02 0.0061 29.6 10.2 183 147-340 134-366 (997)
302 1nyp_A Pinch protein; LIM doma 38.0 20 0.00068 22.2 2.3 10 12-21 32-41 (66)
303 3vth_A Hydrogenase maturation 37.4 17 0.00058 35.6 2.6 51 7-57 107-194 (761)
304 1bbo_A Human enhancer-binding 37.3 11 0.00037 22.2 0.9 39 12-57 2-40 (57)
305 2epz_A Zinc finger protein 28 37.2 51 0.0017 17.9 3.9 15 10-24 11-25 (46)
306 3l3f_X Protein DOA1, DOA1/UFD3 37.0 80 0.0027 27.7 6.6 99 281-382 211-327 (362)
307 2ely_A Zinc finger protein 224 36.5 35 0.0012 18.7 3.1 15 10-24 11-25 (46)
308 2ytt_A Zinc finger protein 473 36.3 31 0.0011 18.9 2.8 15 10-24 11-25 (46)
309 1x64_A Alpha-actinin-2 associa 35.9 22 0.00074 23.8 2.3 40 10-58 24-63 (89)
310 2eoq_A Zinc finger protein 224 35.8 54 0.0019 17.8 3.9 15 10-24 11-25 (46)
311 2emk_A Zinc finger protein 28 35.6 55 0.0019 17.8 4.1 15 10-24 11-25 (46)
312 1x6a_A LIMK-2, LIM domain kina 35.5 37 0.0013 22.0 3.4 32 12-43 42-76 (81)
313 2lce_A B-cell lymphoma 6 prote 34.9 21 0.00072 22.4 2.1 42 9-57 15-56 (74)
314 2eml_A Zinc finger protein 28 34.8 44 0.0015 18.2 3.4 14 10-23 11-24 (46)
315 2em0_A Zinc finger protein 224 34.8 57 0.0019 17.7 4.0 15 10-24 11-25 (46)
316 2ytq_A Zinc finger protein 268 34.8 57 0.0019 17.7 4.1 15 10-24 11-25 (46)
317 2l43_A N-teminal domain from h 34.6 9 0.00031 25.9 0.2 54 8-61 22-81 (88)
318 2k16_A Transcription initiatio 34.5 9.5 0.00033 24.7 0.3 47 10-56 17-69 (75)
319 2ytr_A Zinc finger protein 347 34.5 57 0.002 17.6 4.0 15 10-24 11-25 (46)
320 2dj7_A Actin-binding LIM prote 34.4 18 0.00062 23.6 1.7 41 8-57 12-53 (80)
321 1x6e_A Zinc finger protein 24; 34.3 24 0.00083 21.9 2.3 42 9-57 12-53 (72)
322 2ep2_A Zinc finger protein 484 34.0 44 0.0015 18.2 3.3 15 10-24 11-25 (46)
323 2eoe_A Zinc finger protein 347 33.6 48 0.0017 18.0 3.4 16 9-24 10-25 (46)
324 2ee8_A Protein ODD-skipped-rel 33.5 50 0.0017 22.3 4.1 16 8-23 14-29 (106)
325 2elz_A Zinc finger protein 224 33.3 61 0.0021 17.6 4.1 15 10-24 11-25 (46)
326 2adr_A ADR1; transcription reg 33.0 29 0.001 20.4 2.5 36 11-57 2-41 (60)
327 1wyh_A SLIM 2, skeletal muscle 32.7 31 0.0011 21.7 2.6 30 12-41 34-64 (72)
328 2ema_A Zinc finger protein 347 32.7 48 0.0017 18.0 3.3 14 10-23 11-24 (46)
329 1joc_A EEA1, early endosomal a 32.5 16 0.00053 26.6 1.2 29 12-40 70-102 (125)
330 2emh_A Zinc finger protein 484 32.4 29 0.00099 19.0 2.2 15 10-24 11-25 (46)
331 2gmg_A Hypothetical protein PF 32.2 9.1 0.00031 26.6 -0.1 28 22-55 66-93 (105)
332 2el4_A Zinc finger protein 268 32.1 47 0.0016 18.0 3.2 14 10-23 11-24 (46)
333 2em5_A ZFP-95, zinc finger pro 32.1 46 0.0016 18.1 3.1 15 10-24 11-25 (46)
334 1j2o_A FLIN2, fusion of rhombo 32.0 60 0.002 22.8 4.3 35 10-44 29-66 (114)
335 2em8_A Zinc finger protein 224 31.8 34 0.0012 18.8 2.4 15 10-24 11-25 (46)
336 2gqj_A Zinc finger protein KIA 31.5 22 0.00076 24.0 1.9 40 10-56 23-64 (98)
337 1vsy_5 Proteasome activator BL 31.4 2.8E+02 0.0095 28.2 10.4 62 187-253 133-199 (997)
338 2emy_A Zinc finger protein 268 31.1 31 0.0011 18.9 2.2 15 10-24 11-25 (46)
339 1x62_A C-terminal LIM domain p 30.8 24 0.00081 22.9 1.8 41 8-57 12-52 (79)
340 2emp_A Zinc finger protein 347 30.6 35 0.0012 18.7 2.4 15 10-24 11-25 (46)
341 2l5u_A Chromodomain-helicase-D 30.3 32 0.0011 21.1 2.2 45 8-54 8-57 (61)
342 2em7_A Zinc finger protein 224 30.2 54 0.0018 17.8 3.2 15 10-24 11-25 (46)
343 2ytk_A Zinc finger protein 347 30.2 51 0.0017 17.9 3.1 15 10-24 11-25 (46)
344 2eq0_A Zinc finger protein 347 30.0 56 0.0019 17.7 3.2 14 10-23 11-24 (46)
345 2d8y_A Eplin protein; LIM doma 29.8 38 0.0013 22.6 2.8 30 12-41 43-73 (91)
346 2ene_A Zinc finger protein 347 29.7 54 0.0018 17.8 3.1 14 10-23 11-24 (46)
347 2eme_A Zinc finger protein 473 29.6 59 0.002 17.6 3.3 15 10-24 11-25 (46)
348 2ctd_A Zinc finger protein 512 29.6 37 0.0013 22.9 2.7 38 12-57 35-73 (96)
349 2emm_A ZFP-95, zinc finger pro 29.4 58 0.002 17.6 3.2 15 10-24 11-25 (46)
350 2l3k_A Rhombotin-2, linker, LI 29.3 29 0.001 24.9 2.2 34 10-43 35-70 (123)
351 2el6_A Zinc finger protein 268 29.2 60 0.002 17.6 3.3 14 10-23 11-24 (46)
352 2ytd_A Zinc finger protein 473 29.0 33 0.0011 18.8 2.0 15 10-24 11-25 (46)
353 1b8t_A Protein (CRP1); LIM dom 29.0 46 0.0016 26.0 3.5 34 10-43 33-67 (192)
354 2cot_A Zinc finger protein 435 28.9 47 0.0016 20.8 3.1 38 9-57 16-57 (77)
355 2ytj_A Zinc finger protein 484 28.5 60 0.0021 17.6 3.2 15 10-24 11-25 (46)
356 1ard_A Yeast transcription fac 28.4 23 0.0008 16.6 1.2 12 12-23 3-14 (29)
357 2eoo_A ZFP-95, zinc finger pro 28.4 41 0.0014 18.4 2.4 15 10-24 11-25 (46)
358 2ysp_A Zinc finger protein 224 27.9 50 0.0017 17.9 2.7 15 10-24 11-25 (46)
359 2emf_A Zinc finger protein 484 27.9 63 0.0022 17.5 3.2 15 10-24 11-25 (46)
360 1x5w_A Zinc finger protein 64, 27.7 51 0.0018 20.1 3.0 38 9-57 7-48 (70)
361 1x3h_A Leupaxin; paxillin fami 27.7 59 0.002 20.8 3.4 30 12-41 42-72 (80)
362 2dlo_A Thyroid receptor-intera 27.7 61 0.0021 20.9 3.5 30 12-41 42-73 (81)
363 3rru_A TOM1L1 protein; structu 27.6 48 0.0016 25.0 3.2 71 311-381 54-130 (152)
364 2yu8_A Zinc finger protein 347 27.5 42 0.0014 18.3 2.3 16 9-24 10-25 (46)
365 2ep0_A Zinc finger protein 28 27.3 66 0.0023 17.4 3.2 14 10-23 11-24 (46)
366 1sz9_A PCF11 protein; RNA poly 27.2 1.9E+02 0.0064 21.3 7.3 70 311-380 44-113 (144)
367 2em9_A Zinc finger protein 224 27.0 67 0.0023 17.3 3.2 15 10-24 11-25 (46)
368 1znf_A 31ST zinc finger from X 26.9 22 0.00076 16.3 0.9 12 12-23 2-13 (27)
369 3vld_A DNA mismatch repair pro 26.9 3.7E+02 0.013 24.6 15.1 142 162-317 52-203 (500)
370 2m0e_A Zinc finger and BTB dom 26.8 27 0.00094 16.2 1.3 12 12-23 3-14 (29)
371 2en8_A Zinc finger protein 224 26.7 64 0.0022 17.4 3.1 15 10-24 11-25 (46)
372 1llm_C Chimera of ZIF23-GCN4; 26.7 25 0.00086 23.0 1.4 41 10-57 2-42 (88)
373 2enc_A Zinc finger protein 224 26.5 69 0.0024 17.3 3.2 15 10-24 11-25 (46)
374 1x4l_A Skeletal muscle LIM-pro 26.2 41 0.0014 21.1 2.3 28 12-39 36-64 (72)
375 2epx_A Zinc finger protein 28 26.1 84 0.0029 16.9 3.8 14 10-23 11-24 (47)
376 1wfp_A Zinc finger (AN1-like) 26.0 82 0.0028 20.3 3.5 28 9-36 23-51 (74)
377 2kdx_A HYPA, hydrogenase/ureas 26.0 23 0.00077 25.4 1.1 22 28-56 78-100 (119)
378 2emx_A Zinc finger protein 268 25.9 41 0.0014 18.1 2.1 15 10-24 9-23 (44)
379 1klr_A Zinc finger Y-chromosom 25.9 30 0.001 16.2 1.4 12 12-23 3-14 (30)
380 2yso_A ZFP-95, zinc finger pro 25.9 72 0.0025 17.2 3.2 15 10-24 11-25 (46)
381 2en1_A Zinc finger protein 224 24.9 60 0.002 17.6 2.7 14 10-23 11-24 (46)
382 2dlq_A GLI-kruppel family memb 24.9 52 0.0018 22.9 3.0 16 9-24 5-20 (124)
383 1paa_A Yeast transcription fac 24.7 33 0.0011 16.2 1.3 12 12-23 3-14 (30)
384 2kvh_A Zinc finger and BTB dom 24.6 25 0.00085 16.3 0.8 11 12-22 4-14 (27)
385 1weu_A Inhibitor of growth fam 24.4 70 0.0024 21.6 3.2 46 8-56 33-86 (91)
386 2ctu_A Zinc finger protein 483 24.1 15 0.00052 22.8 -0.1 34 10-57 17-50 (73)
387 1l8d_A DNA double-strand break 24.1 20 0.00067 25.3 0.4 13 46-58 47-59 (112)
388 1p7a_A BF3, BKLF, kruppel-like 24.0 27 0.00093 17.8 1.0 14 10-23 10-23 (37)
389 1g47_A Pinch protein; LIM doma 23.9 37 0.0013 21.6 1.8 38 11-57 11-50 (77)
390 1wen_A Inhibitor of growth fam 23.8 98 0.0034 19.6 3.7 48 6-56 11-66 (71)
391 2cuq_A Four and A half LIM dom 23.6 72 0.0025 20.4 3.2 30 12-41 42-72 (80)
392 2d9h_A Zinc finger protein 692 23.4 34 0.0012 21.6 1.5 41 9-56 5-48 (78)
393 1wfk_A Zinc finger, FYVE domai 23.4 46 0.0016 22.3 2.1 32 9-40 7-42 (88)
394 1x4k_A Skeletal muscle LIM-pro 23.2 53 0.0018 20.5 2.4 30 12-41 34-64 (72)
395 1z2q_A LM5-1; membrane protein 23.0 37 0.0013 22.5 1.6 29 12-40 22-54 (84)
396 2wbt_A B-129; zinc finger; 2.7 23.0 60 0.0021 22.9 3.0 12 45-56 99-110 (129)
397 2dmd_A Zinc finger protein 64, 22.9 94 0.0032 20.3 3.9 15 9-23 6-20 (96)
398 2lvu_A Zinc finger and BTB dom 28.4 18 0.00061 16.6 0.0 12 12-23 3-14 (26)
399 2ct1_A Transcriptional repress 22.7 43 0.0015 21.0 1.9 40 10-56 14-55 (77)
400 2en6_A Zinc finger protein 268 22.6 37 0.0013 18.5 1.4 15 10-24 11-25 (46)
401 2ku3_A Bromodomain-containing 22.3 27 0.00094 22.3 0.8 49 6-54 11-65 (71)
402 2ffw_A Midline-1; B-BOX, ring 22.2 61 0.0021 21.0 2.5 34 9-42 28-64 (78)
403 1wg2_A Zinc finger (AN1-like) 22.2 84 0.0029 19.6 2.9 28 9-36 13-41 (64)
404 2kmk_A Zinc finger protein GFI 21.8 31 0.0011 21.8 1.1 13 12-24 2-14 (82)
405 2elr_A Zinc finger protein 406 21.7 36 0.0012 17.1 1.2 15 10-24 8-22 (36)
406 1x63_A Skeletal muscle LIM-pro 21.6 63 0.0021 20.8 2.6 10 13-22 17-26 (82)
407 1b8t_A Protein (CRP1); LIM dom 21.6 79 0.0027 24.6 3.6 41 12-55 143-184 (192)
408 2m0d_A Zinc finger and BTB dom 21.6 25 0.00086 16.6 0.4 12 12-23 4-15 (30)
409 1rik_A E6APC1 peptide; E6-bind 21.4 27 0.00092 16.4 0.5 12 12-23 3-14 (29)
410 1a1h_A QGSR zinc finger peptid 21.3 37 0.0012 22.1 1.4 13 11-23 4-18 (90)
411 2wbs_A Krueppel-like factor 4; 21.3 72 0.0025 20.4 2.9 15 9-23 3-19 (89)
412 2kpi_A Uncharacterized protein 21.3 49 0.0017 20.0 1.7 19 4-22 3-21 (56)
413 2kvf_A Zinc finger and BTB dom 21.2 32 0.0011 16.0 0.8 11 12-22 4-14 (28)
414 1wfh_A Zinc finger (AN1-like) 20.9 1.1E+02 0.0036 19.1 3.2 28 9-36 13-41 (64)
415 3lqh_A Histone-lysine N-methyl 20.6 31 0.001 27.0 0.9 45 12-56 3-64 (183)
416 3f6q_B LIM and senescent cell 20.5 52 0.0018 20.4 2.0 38 11-57 11-50 (72)
417 2js4_A UPF0434 protein BB2007; 20.5 50 0.0017 21.0 1.8 18 5-22 2-19 (70)
418 2lvt_A Zinc finger and BTB dom 25.7 22 0.00074 16.9 0.0 13 12-24 3-15 (29)
419 1wff_A Riken cDNA 2810002D23 p 20.3 50 0.0017 22.0 1.7 25 12-36 26-52 (85)
420 3rru_A TOM1L1 protein; structu 20.1 1.8E+02 0.0061 21.7 5.1 74 102-175 51-130 (152)
421 2yt9_A Zinc finger-containing 20.1 29 0.00098 22.9 0.6 16 9-24 5-20 (95)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.1e-34 Score=254.97 Aligned_cols=265 Identities=22% Similarity=0.255 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-----------CChHHHHHHHHHHHhcccccc-ccchhc-
Q 016464 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIV- 184 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~~-~~~~i~- 184 (389)
.+.+..|+++|.+++. ++++|..+.+.|+++.|+.+|.. .++.+++.|+++|.||+..++ ++..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456689999999997 58999999999999999999952 246789999999999998664 777775
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHHHhhCcHHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCC
Q 016464 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQG 260 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~~-~~~ 260 (389)
..|+|+.|+++|++++++++..|+++|.||+.. ++++..+.+.|+++.|+++| .+.+..+++.++.+|+||+. +++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 456699999999999999999999999999974 46888899999999999975 56788999999999999998 557
Q ss_pred chHHHH-hcCCcHHHHHHHhhcCc----ccHHHHHHHHHHHhc----ChhhHHHhhccCChHHHHHHHhcCChHHHHHHH
Q 016464 261 NKARAV-RAGIVPPLMRFLKDAGG----GMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 261 ~~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
++..++ ..|+++.|+++|.+.++ ++++.|+.+|.||+. .++++..+.+.|+++.|+++|.+++..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 788887 68999999999987654 389999999999995 888999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 332 AVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 332 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
++|+||+..+++.++.+.+.|+++.|+++++++++++++.|+++|.+|....
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999888899999999999999999999999999999999999998763
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.5e-33 Score=259.34 Aligned_cols=279 Identities=21% Similarity=0.269 Sum_probs=243.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccccchh
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTI 183 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i 183 (389)
.++.++++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+++|++++++++..|+++|.||+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 488999999999999999999999999987888888999999999999999999999999999999999986 7899999
Q ss_pred cccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc--------cC--------ChhhHH
Q 016464 184 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC--------DG--------TPRGKK 246 (389)
Q Consensus 184 ~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~--------~~--------~~~~~~ 246 (389)
++.|+++.|+++|. ++++++++.|+++|+||+..++++..+.+ |+++.|++++. ++ +..+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889998988 99999999993 22 355667
Q ss_pred HHHHHHHHhccCCCchHHHHhc-CCcHHHHHHHhh------cCcccHHHHHHHHHHHhcC--------------------
Q 016464 247 DAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASH-------------------- 299 (389)
Q Consensus 247 ~a~~~L~~L~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~-------------------- 299 (389)
.|+++|.||+.+++++..+.+. |+++.|+.+|.+ .+..+++.++.+|.+++..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999987788888887 999999999986 4678899999999999732
Q ss_pred -------------------------------hhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcCHH----
Q 016464 300 -------------------------------QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAE---- 343 (389)
Q Consensus 300 -------------------------------~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~---- 343 (389)
+.+.+.+++.|+++.|+.+|.+. ++.+++.|+++|+||+.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 11234456677899999999865 689999999999999986522
Q ss_pred H-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 344 Q-LKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 344 ~-~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
. +..+.+.|+++.|++++.+++.++++.|+|+|++++...+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 2334468999999999999999999999999999987654
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-32 Score=267.34 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=251.4
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-----------------------------hhh---HHHHhcCCH
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----------------------------DNR---VCIAEAGAI 148 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~~g~v 148 (389)
.+.|++|.|+++|++++..+++.|+++|.|++.+.+ ..+ ..+++.|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 467999999999999999999999999999997542 122 678899999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHH---H
Q 016464 149 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI---G 225 (389)
Q Consensus 149 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~---~ 225 (389)
|.|+.+|+++++.+++.|+++|.||+.+++++..+++.|++++|+.+|.++++..+..|+++|.+|+...+....+ .
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 9999999999999999999999999998899999999999999999999999999999999999998653332222 1
Q ss_pred hhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccCC-CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhH
Q 016464 226 AAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 303 (389)
Q Consensus 226 ~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 303 (389)
..|++++|+++|.++ +...+..|+++|.||+..+ +.+..+++.|+++.|+.+|.+.++.+++.|+.+|+||+.+++.+
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 247999999999865 3344578999999999875 56788999999999999999999999999999999999999998
Q ss_pred HHhhc-cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 304 TAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 304 ~~i~~-~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
..+.+ .|.++.|+.++.+.+..++..|+++|+||+.+++...+.+.+ .|+++.|+.++.+++.++++.|.|+|.++..
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 88886 789999999999999999999999999999988888888888 8999999999999999999999999999976
Q ss_pred h
Q 016464 382 I 382 (389)
Q Consensus 382 ~ 382 (389)
.
T Consensus 738 ~ 738 (810)
T 3now_A 738 A 738 (810)
T ss_dssp T
T ss_pred C
Confidence 4
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=256.75 Aligned_cols=260 Identities=22% Similarity=0.262 Sum_probs=234.1
Q ss_pred HHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-----------CChHHHHHHHHHHHhcccccc-ccchhc-ccCCh
Q 016464 123 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIV-NAGAI 189 (389)
Q Consensus 123 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~~-~~~~i~-~~g~l 189 (389)
+|+++|.+++. ++++|..+.+.|+++.|+.+|.. .++.+++.|+++|.||+.+++ ++..+. ..|+|
T Consensus 167 qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 89999999986 58999999999999999999952 246789999999999998764 666665 45669
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHHHhhCcHHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCCchHHH
Q 016464 190 PDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGNKARA 265 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~~-~~~~~~~~ 265 (389)
+.|+.+|.+++++++..|+++|.+|+.. ++++..+.+.|+++.|+++| .+.+..+++.++.+|+||+. +++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999974 46888899999999999975 55688999999999999998 66788888
Q ss_pred H-hcCCcHHHHHHHhhcCcc----cHHHHHHHHHHHhc----ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 016464 266 V-RAGIVPPLMRFLKDAGGG----MVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 336 (389)
Q Consensus 266 ~-~~~~i~~L~~ll~~~~~~----~~~~a~~~L~~l~~----~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~ 336 (389)
+ ..|+++.|+++|.+.++. +++.|+++|.||+. .++++..+.+.|+++.|+.+|.+++..+++.|+++|+|
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 7 689999999999886553 89999999999994 88889999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 337 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
|+..+++.+..+.+.|+++.|+.++.++++++++.|+++|++|....
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99888999999999999999999999999999999999999998653
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.4e-32 Score=257.90 Aligned_cols=284 Identities=19% Similarity=0.217 Sum_probs=254.0
Q ss_pred CccchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc
Q 016464 99 SDCDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 177 (389)
.+.+.|++|.|+++|++. +++++.+|+++|.+++.++++++..+++.|++|.|+++|++++.++++.|+++|+||+.+.
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 456789999999999754 5899999999999999999999999999999999999999999999999999999999865
Q ss_pred -cccchhcccCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHH
Q 016464 178 -SNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 178 -~~~~~i~~~g~l~~L~~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 250 (389)
+.+..+.+.|+++.|+.+|.+++ ......+++++.+++...... ......++++.|+.++.+++.+++..+++
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 66888889999999999998654 456788999999998765433 23334689999999999999999999999
Q ss_pred HHHHhccCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCChHHHH
Q 016464 251 AIFNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRE 328 (389)
Q Consensus 251 ~L~~L~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~~~~~~ 328 (389)
+|.+|+..+..+ ..+.+.|+++.|+++|.+.+..++..++.+|+|++.. +..+..+++.|+++.|+.++.+.++.++.
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence 999999877655 4566789999999999999999999999999999854 55677888999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 329 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 329 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.|+++|+||+.+++.....+.+.|+++.|+.++.+++.++|+.|+++|.++...
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999763
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.4e-32 Score=254.84 Aligned_cols=286 Identities=20% Similarity=0.219 Sum_probs=248.5
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccccc
Q 016464 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~ 177 (389)
.+.+.|+++.|+++|++++++++..|+++|.+++.++++++..+++.|+++.|+++|. ++++++++.|+++|+||+.++
T Consensus 39 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~ 118 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH
Confidence 3567899999999999999999999999999999988999999999999999999999 789999999999999999998
Q ss_pred cccchhcccCChHHHHHHHc--------cC--------CHHHHHHHHHHHHHhcCCchhhHHHHhh-CcHHHHHHHhcc-
Q 016464 178 SNKGTIVNAGAIPDIVDVLK--------NG--------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCD- 239 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~~~~~-~~i~~L~~ll~~- 239 (389)
+++..+++ |+++.|+++|. ++ ++++...|+++|+||+..++++..+.+. |+++.|+.+|.+
T Consensus 119 ~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 119 ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 89998999 99999999993 22 4566779999999999987788888887 999999988763
Q ss_pred -----C--------------------------------------------------------------------------
Q 016464 240 -----G-------------------------------------------------------------------------- 240 (389)
Q Consensus 240 -----~-------------------------------------------------------------------------- 240 (389)
.
T Consensus 198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
T 1xm9_A 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277 (457)
T ss_dssp HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence 1
Q ss_pred -------------------ChhhHHHHHHHHHHhccCCCch-----HHHH-hcCCcHHHHHHHhhcCcccHHHHHHHHHH
Q 016464 241 -------------------TPRGKKDAATAIFNLSIYQGNK-----ARAV-RAGIVPPLMRFLKDAGGGMVDEALAILAI 295 (389)
Q Consensus 241 -------------------~~~~~~~a~~~L~~L~~~~~~~-----~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 295 (389)
++.+++.|+|+|.||+...... ..++ +.|+++.|+++|.+++.+++..|+++|.|
T Consensus 278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 2345566789999998765432 2233 58999999999999999999999999999
Q ss_pred HhcChhhHHHhhccCChHHHHHHHhcCC------hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHH
Q 016464 296 LASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRA 368 (389)
Q Consensus 296 l~~~~~~~~~i~~~~~v~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~ 368 (389)
++.++..+..+. .|+++.|+++|...+ +++...++++|.++...+++....+.+.|+++.|+.++.++ ++++
T Consensus 358 ls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i 436 (457)
T 1xm9_A 358 MSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp HHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHH
Confidence 999887776665 479999999998864 35778999999999998888999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhhHhhh
Q 016464 369 KRKAGSILELLQRIDMAV 386 (389)
Q Consensus 369 ~~~a~~~L~~l~~~~~~~ 386 (389)
+++|.++|.++..+.+..
T Consensus 437 ~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 437 AEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHcchhhh
Confidence 999999999998776653
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.8e-32 Score=253.96 Aligned_cols=280 Identities=22% Similarity=0.279 Sum_probs=241.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc--cccc
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNK 180 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~--~~~~ 180 (389)
.+.++.|+++|.+++++++..|+++|.+++.++.+++..+.+.|+||.|+++|.+++.++++.|+++|.||+.. ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 45699999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred chhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc------------------cCC
Q 016464 181 GTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC------------------DGT 241 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~------------------~~~ 241 (389)
..+++.|+|+.|+++|++ ++.++++.++++|++|+..++++..+.. ++++.|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5789999999999999999999999885 57999999872 125
Q ss_pred hhhHHHHHHHHHHhccCCC-chHHHHhc-CCcHHHHHHHhh------cCcccHHHHHHHHHHHhcChh------------
Q 016464 242 PRGKKDAATAIFNLSIYQG-NKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASHQE------------ 301 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~-~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~------------ 301 (389)
..+++.|+++|.||+..++ ++..+++. |+++.|+.++.+ .+...++.|+.+|.||+....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 7899999999999999775 48888885 557899999975 456789999999999996521
Q ss_pred --------------hHHHhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcC----HHHHHHHHhcCcHHHHHHHHH
Q 016464 302 --------------GKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD----AEQLKIARELDAEEALKELSE 362 (389)
Q Consensus 302 --------------~~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~~~~L~~ll~ 362 (389)
+...+.+.++++.|+.++.. .++.+++.|+++|.||+.++ ...+..+.+.++++.|+.++.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 12223344567788999965 57999999999999998865 233445566799999999999
Q ss_pred hCChHHHHHHHHHHHHHHhhH
Q 016464 363 SGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 363 ~~~~~~~~~a~~~L~~l~~~~ 383 (389)
++++++++.|.++|++|+...
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCh
Confidence 999999999999999998754
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=251.56 Aligned_cols=283 Identities=20% Similarity=0.203 Sum_probs=245.8
Q ss_pred CccchhHHHHHHHhhcCC------------CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCH----------HHHHHHhc
Q 016464 99 SDCDRAAIDALLGKLANG------------NVEEQRAAAGELRLLAKRNADNRVCIAEAGAI----------PLLVELLS 156 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v----------~~L~~lL~ 156 (389)
.+.+.|.+|.|+++|+.. +++.+.+|+++|.+++.+.++......+.|++ +.+++++.
T Consensus 65 ~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (458)
T 3nmz_A 65 SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQE 144 (458)
T ss_dssp HHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 457899999999999963 37999999999999999999888888888877 67777777
Q ss_pred CCC--hH-----HHH-------HHHHHHHhccccccccchhcccCChHHHHHHHcc-----------CCHHHHHHHHHHH
Q 016464 157 STD--PR-----TQE-------HAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-----------GSMEARENAAATL 211 (389)
Q Consensus 157 ~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~-----------~~~~~~~~a~~~L 211 (389)
+.. .+ +++ .|+++|.|++.++++|+.+.+.|++++|+.+|.. .++.++..|+++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 642 12 444 9999999999999999999999999999999952 2467899999999
Q ss_pred HHhcCCch-hhHHHHh-hCcHHHHHHHhccCChhhHHHHHHHHHHhccC--CCchHHHHhcCCcHHHHHHHh-hcCcccH
Q 016464 212 FSLSVIDE-NKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPPLMRFLK-DAGGGMV 286 (389)
Q Consensus 212 ~~Ls~~~~-~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~--~~~~~~~~~~~~i~~L~~ll~-~~~~~~~ 286 (389)
.||+..++ ++..+.. .|+|+.|+.+|.+++++++..|+++|.||+.. ++++..+++.|+++.|+++|. +.+..++
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 99998765 5555544 56799999999999999999999999999985 457788999999999999864 4677899
Q ss_pred HHHHHHHHHHhc-ChhhHHHhh-ccCChHHHHHHHhcCCh----HHHHHHHHHHHHHhh---cCHHHHHHHHhcCcHHHH
Q 016464 287 DEALAILAILAS-HQEGKTAIG-QAEPIPVLMEVIRTGSP----RNRENAAAVLWAICT---GDAEQLKIARELDAEEAL 357 (389)
Q Consensus 287 ~~a~~~L~~l~~-~~~~~~~i~-~~~~v~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L 357 (389)
+.|+.+|+||+. .++++..+. ..|+++.|+++|.+.++ .+++.|+++|.||+. .+++.++.+.+.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 999999999998 778888887 78999999999988654 489999999999997 688899999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHh
Q 016464 358 KELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 358 ~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+.++.+++..+++.|+++|.+|+.
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999999983
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.3e-31 Score=254.38 Aligned_cols=284 Identities=19% Similarity=0.215 Sum_probs=255.2
Q ss_pred CccchhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc
Q 016464 99 SDCDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 177 (389)
.+.+.|++|.|+++|.. ++++++..|+++|.+++.+++++...+++.|++|.|+.+|.+++.++++.|+++|+||+.+.
T Consensus 114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 35678999999999975 46899999999999999999999999999999999999999999999999999999999865
Q ss_pred -cccchhcccCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHH
Q 016464 178 -SNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 178 -~~~~~i~~~g~l~~L~~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 250 (389)
+.+..+.+.|+++.|+.+|..++ ......++++|.+++...... ......++++.|+.++.+++++++..+++
T Consensus 194 ~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~ 273 (529)
T 3tpo_A 194 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 77888889999999999998654 456788999999998775433 33344689999999999999999999999
Q ss_pred HHHHhccCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHH
Q 016464 251 AIFNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRE 328 (389)
Q Consensus 251 ~L~~L~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~ 328 (389)
+|.+++...... ..+++.|+++.|+.+|.+.+..++..++.+|+|++. .+..+..+++.|+++.|+.++.+.++.++.
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~ 353 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 353 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHH
Confidence 999999877655 456678999999999999999999999999999986 456677888999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 329 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 329 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.|+++|+||+.+++.....+.+.|+++.|+.++.+++.+++..|+|+|.++...
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999753
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=2.4e-31 Score=258.79 Aligned_cols=285 Identities=16% Similarity=0.149 Sum_probs=254.9
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016464 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
+.+.|+++.|+++|+++++.++++|+++|.+++. +++++..+++.|+++.|+.+|.++++..++.|+++|.+|+.+.+.
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 3567999999999999999999999999999996 678999999999999999999999999999999999999865433
Q ss_pred cchhc---ccCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 180 KGTIV---NAGAIPDIVDVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 180 ~~~i~---~~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
...+. ..|++++|+.+|.++ +...+..|+++|.||+..+ +.+..+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22221 146899999999865 4455678999999999874 678888999999999999999999999999999999
Q ss_pred hccCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhc-cCChHHHHHHHhcCChHHHHHHH
Q 016464 255 LSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 255 L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~-~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
|+.+++.+..+++ .|.++.|+.++.+.+..++..|+++|++|+. ++.....+++ .|+++.|++++.+++.+++..|+
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 9999888888886 6899999999999999999999999999998 6778888888 89999999999999999999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC---ChHHHHHHHHHHHHHHhhHhh
Q 016464 332 AVLWAICTGDAEQLKIARELDAEEALKELSESG---TDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 332 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~ 385 (389)
++|.|++.++++....+.+.|+++.|+.+++.. +.++.+.|.++|.++-++..+
T Consensus 730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 999999998888999999999999999998655 689999999999999877654
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=8.5e-31 Score=246.91 Aligned_cols=286 Identities=24% Similarity=0.248 Sum_probs=239.2
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-ChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcccc
Q 016464 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIN 176 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~ 176 (389)
.+.+.|+|+.|+++|.+++.++++.|+++|.+|+.+ +++++..+++.|+|+.|+++|.+ .+.++++.|+++|++|+.+
T Consensus 85 ~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 85 DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999999999985 68999999999999999999997 5788999999999999999
Q ss_pred ccccchhcccCChHHHHHHHc------------------cCCHHHHHHHHHHHHHhcCCch-hhHHHHhh-CcHHHHHHH
Q 016464 177 DSNKGTIVNAGAIPDIVDVLK------------------NGSMEARENAAATLFSLSVIDE-NKVAIGAA-GAIPALIRL 236 (389)
Q Consensus 177 ~~~~~~i~~~g~l~~L~~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~-~~i~~L~~l 236 (389)
++++..+++ ++++.|+++|. ..++++++.|+++|.||+..++ .+..+.+. |+++.|+.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 999999985 57999999872 2257899999999999998764 46666553 445566555
Q ss_pred hcc--------------------------------------------------------------------------CCh
Q 016464 237 LCD--------------------------------------------------------------------------GTP 242 (389)
Q Consensus 237 l~~--------------------------------------------------------------------------~~~ 242 (389)
+++ .++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 532 234
Q ss_pred hhHHHHHHHHHHhccCCC-----chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHH
Q 016464 243 RGKKDAATAIFNLSIYQG-----NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME 317 (389)
Q Consensus 243 ~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ 317 (389)
.+++.|+++|.||+.... .+..+.+.++++.|+++|.+.+..+++.|+++|.||+.++.++..| ..|+++.|++
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~ 402 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVK 402 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHH
Confidence 455666667777765432 1222334688999999999999999999999999999998888766 6789999999
Q ss_pred HHhcC--------ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHhhHhhh
Q 016464 318 VIRTG--------SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQRIDMAV 386 (389)
Q Consensus 318 ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~ 386 (389)
+|.++ +.++...|+++|.||+..++++.+.+.+.|+++.|+.++.++ .+.+++.|.++|.+|..+.+..
T Consensus 403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr 481 (584)
T 3l6x_A 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481 (584)
T ss_dssp TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH
Confidence 99876 357788999999999999999999999999999999999986 8899999999999998776653
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=4e-30 Score=246.35 Aligned_cols=283 Identities=20% Similarity=0.244 Sum_probs=258.3
Q ss_pred ccchhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-
Q 016464 100 DCDRAAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND- 177 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~- 177 (389)
+.+.|.++.|+++|.+++ +.++..|+++|.+++.++++++..+.+.|+++.|+.+|.++++.+++.|+++|++|+.+.
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh
Confidence 456789999999999887 999999999999999988999999999999999999999999999999999999999764
Q ss_pred cccchhcccCChHHHHHHH-ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016464 178 SNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
..+..+.+.|+++.|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.+.+..++..++++|.+|+
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5678888899999999999 677899999999999999987554444556899999999999999999999999999999
Q ss_pred cCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHH
Q 016464 257 IYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAV 333 (389)
Q Consensus 257 ~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~ 333 (389)
...+.. ..+++.|+++.|+.+|.+.++.++..|+.+|++|+. .+.....+++.|+++.|+.+|.+. ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 876655 567788999999999999999999999999999997 455677788899999999999998 89999999999
Q ss_pred HHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 334 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 334 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
|.||+..++.....+.+.|+++.|+.++.++++.++..|.++|.++...
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999998888888999999999999999999999999999999999876
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.7e-29 Score=241.40 Aligned_cols=285 Identities=18% Similarity=0.177 Sum_probs=254.4
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCC-----hHHHHHHHHHHHhcc
Q 016464 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLS 174 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~-----~~~~~~a~~~L~~l~ 174 (389)
+.+.|+++.|+.+|.+++.++++.|+++|.+++.++++++..+.+.|+++.|+.+|...+ ....+.++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999989999999999999999999998754 346788999999999
Q ss_pred ccccccchh-cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-hHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016464 175 INDSNKGTI-VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 175 ~~~~~~~~i-~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
.+......+ ...|+++.|+.+|.+++++++..|+++|.+++..++. ...+...|+++.|+.+|.+.+..++..++.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 876544443 3478999999999999999999999999999987654 45567789999999999999999999999999
Q ss_pred HHhccCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHH
Q 016464 253 FNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 330 (389)
Q Consensus 253 ~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a 330 (389)
+|++..++ ....+++.|+++.|+.+|.++++.++..|+++|.||+. .+..+..+.+.|+++.|+.++.+++.+++..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 99987654 55678899999999999999999999999999999996 45567778889999999999999999999999
Q ss_pred HHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 331 AAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 331 ~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
+++|.|++.+ +++....+.+.|+++.|+.++.+.+++++..+.++|.+|.+..+
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 9999999875 57888899999999999999999999999999999999976543
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=1.6e-29 Score=240.25 Aligned_cols=285 Identities=18% Similarity=0.181 Sum_probs=253.5
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCC-----hHHHHHHHHHHHhcc
Q 016464 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLS 174 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~-----~~~~~~a~~~L~~l~ 174 (389)
+.+.|++|.|+++|.+++.++++.|+++|.+++.+++..+..+.+.|+++.|+.+|...+ ...++.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 467799999999999999999999999999999989999999999999999999998754 346788999999999
Q ss_pred ccccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016464 175 INDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 175 ~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
.+......+. ..++++.|+++|.+++++++..|+++|.+|+..+..+ ..+...|+++.|+.++.+.+..++..++++|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 8765544443 4789999999999999999999999999999876544 4566789999999999999999999999999
Q ss_pred HHhccCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHH
Q 016464 253 FNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 330 (389)
Q Consensus 253 ~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a 330 (389)
+|++..++ ....+++.|+++.|+.+|.+++..++..|+++|.||+. .+..+..+.+.|+++.|+.++.+++.+++..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 99987655 45678899999999999999999999999999999986 55667788889999999999999999999999
Q ss_pred HHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 331 AAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 331 ~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
+++|.|++.+ +++....+.+.|+++.|+.++.+.+++++..+.++|.+|.+..+
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 9999999875 57788889999999999999999999999999999999976543
No 15
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8.5e-31 Score=235.02 Aligned_cols=246 Identities=19% Similarity=0.204 Sum_probs=219.5
Q ss_pred CCccchhHHHHHHHhhcC-----------CCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcCCChHHHHH
Q 016464 98 VSDCDRAAIDALLGKLAN-----------GNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEH 165 (389)
Q Consensus 98 ~~~~~~~~i~~l~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~~~~~~~~~ 165 (389)
..+.+.|+++.|+.+|.+ .+++++..|+++|.+++.++.+++..+... |++|.|+++|.++++++++.
T Consensus 67 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 146 (354)
T 3nmw_A 67 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146 (354)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHH
Confidence 346788999999999953 236789999999999998887788888655 56999999999999999999
Q ss_pred HHHHHHhcccc--ccccchhcccCChHHHHHHH-ccCCHHHHHHHHHHHHHhcC-CchhhHHHH-hhCcHHHHHHHhccC
Q 016464 166 AVTALLNLSIN--DSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSV-IDENKVAIG-AAGAIPALIRLLCDG 240 (389)
Q Consensus 166 a~~~L~~l~~~--~~~~~~i~~~g~l~~L~~lL-~~~~~~~~~~a~~~L~~Ls~-~~~~~~~~~-~~~~i~~L~~ll~~~ 240 (389)
|+++|.||+.. ++++..+.+.|+++.|+++| ++++.++++.|+.+|++|+. .++++..+. ..|+++.|+++|.+.
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 99999999974 46888999999999999975 66789999999999999998 667888887 689999999999876
Q ss_pred Ch----hhHHHHHHHHHHhcc----CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHhhccCC
Q 016464 241 TP----RGKKDAATAIFNLSI----YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEP 311 (389)
Q Consensus 241 ~~----~~~~~a~~~L~~L~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~ 311 (389)
+. ++++.|+++|.||+. +++++..+.+.|+++.|+++|.+.+..+++.|+++|+||+ .+++.+..+.+.|+
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 54 489999999999996 6778888999999999999999999999999999999999 57888999999999
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhhcCHH
Q 016464 312 IPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 312 v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
++.|+++++++++.+++.|+++|.||+.+++.
T Consensus 307 i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999997654
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=3.2e-29 Score=240.11 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=256.8
Q ss_pred ccchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-
Q 016464 100 DCDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND- 177 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~- 177 (389)
+.+.|.++.|+++|.++ ++.++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++++++.|+++|.+|+.+.
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 34578999999999987 8999999999999999988888999999999999999999999999999999999999864
Q ss_pred cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016464 178 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+.+..+...|+++.|+.+|.+.+..++..|+++|.+|+... +........++++.|+.++.+++..++..++++|.+|+
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 67778888999999999999999999999999999999765 44445556899999999999999999999999999999
Q ss_pred cCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHH
Q 016464 257 IYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 334 (389)
Q Consensus 257 ~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L 334 (389)
.... ....+++.|+++.|+.+|.+.+..++..|+.+|++++.. +.....+.+.|+++.|+.+|.+.++.++..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7654 456677889999999999999999999999999999965 55566778889999999999999999999999999
Q ss_pred HHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 335 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+++..+++..+.+.+.|+++.|+.++.++++.++..|.++|.++...
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999998888888889999999999999999999999999999999765
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=2e-28 Score=234.46 Aligned_cols=283 Identities=19% Similarity=0.171 Sum_probs=255.6
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHh-cCCChHHHHHHHHHHHhccccccc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
.+.|+++.|+.+|.+++++++..|+++|.+++.+++..+..+.+.|+++.|+.+| .+.+..++..++++|.+|+...+.
T Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 157 IDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred HhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 4568999999999999999999999999999998888999999999999999999 567899999999999999987655
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016464 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
.......|+++.|+.+|.+++++++..++++|.+|+...+.. ..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus 237 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 237 PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 555556899999999999999999999999999999876554 5667789999999999999999999999999999985
Q ss_pred CC-chHHHHhcCCcHHHHHHHhhc-CcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 016464 259 QG-NKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 259 ~~-~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
.+ ....+++.|+++.|+.+|.+. ++.++..|+++|.||+. .+.....+++.|+++.|+.++.+.++.++..|+++|.
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54 456677899999999999998 89999999999999996 4555677888999999999999999999999999999
Q ss_pred HHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 336 AICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 336 ~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
+++.. +++....+.+.|+++.|+.++.++++.++..+.++|.+|.+..
T Consensus 397 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99987 6888889999999999999999999999999999999997654
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=7e-28 Score=226.13 Aligned_cols=283 Identities=20% Similarity=0.180 Sum_probs=252.6
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccc--
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND-- 177 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~-- 177 (389)
.+.+.++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|++++.+ .+..++..|+++|.+++...
T Consensus 104 ~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 183 (450)
T 2jdq_A 104 IQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183 (450)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 346899999999999999999999999999999888899999999999999999996 68999999999999998754
Q ss_pred cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016464 178 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
..+..+. .++++.|+.++.++++.++..++++|.+|+... +....+...|+++.|+.++.+++..++..++++|.+++
T Consensus 184 ~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 184 PPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp CCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh
Confidence 3333333 789999999999999999999999999999864 55666777899999999999999999999999999999
Q ss_pred cCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHH
Q 016464 257 IYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 334 (389)
Q Consensus 257 ~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L 334 (389)
...+.. ..+.+.|+++.|+.++.++++.++..|+.+|.+++. .+.....+.+.|+++.|+.++.+++++++..|+++|
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L 342 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 876544 456778999999999999999999999999999995 566677788889999999999999999999999999
Q ss_pred HHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 335 WAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 335 ~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
.+++.. +++..+.+.+.|+++.|+.++.+++++++..|.++|.++....+
T Consensus 343 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 999986 67778888899999999999999999999999999999976543
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=1e-28 Score=213.42 Aligned_cols=238 Identities=29% Similarity=0.365 Sum_probs=221.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccccch
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 182 (389)
+.++.|+++|.+++++++..|+++|.+++.++++++..+.+.|+++.|+++|++++.+++..|+++|.+++.+ ++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4689999999999999999999999999998888999999999999999999999999999999999999987 688888
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhc-CCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLS-VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
+.+.|+++.|+.+|++++++++..|+++|.+|+ ..++.+..+.+.|+++.|++++.++++.++..++++|.+|+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 4567888888899999999999999999999999999999986554
Q ss_pred -hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016464 262 -KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 262 -~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
...+.+.|+++.|++++.+.++.++..|+.+|.+++. .+..+..+.+.|+++.|++++++.++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 4778889999999999999999999999999999997 56667888899999999999999999999999999999998
Q ss_pred cC
Q 016464 340 GD 341 (389)
Q Consensus 340 ~~ 341 (389)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=5.9e-28 Score=226.67 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=250.0
Q ss_pred hHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccc
Q 016464 104 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 181 (389)
Q Consensus 104 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~ 181 (389)
+.++.|++.|+++ +++++..|+++|.+++.++++....+.+.|+++.|+++|+++++++++.|+++|.+++.+. +.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999998 8999999999999999888888888889999999999999999999999999999999865 5777
Q ss_pred hhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016464 182 TIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
.+.+.|+++.|+.++.+ .+..++..++++|++++... +........++++.|+.++.+++..++..++++|.+++...
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 78889999999999995 68999999999999999654 22112223789999999999999999999999999999865
Q ss_pred -CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh-hHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 016464 260 -GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 337 (389)
Q Consensus 260 -~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l 337 (389)
+....+.+.|+++.|+.+|.+.++.++..|+.+|.+++...+ ....+.+.|+++.|+.++.+.++.++..|+++|.++
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455667788999999999999999999999999999997644 456677889999999999999999999999999999
Q ss_pred hhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 338 CTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+.+++...+.+.+.|+++.|+.++.++++++|..|.++|.++...
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 998888888899999999999999999999999999999999764
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.1e-28 Score=213.28 Aligned_cols=239 Identities=28% Similarity=0.337 Sum_probs=221.9
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHH
Q 016464 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVA 223 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~ 223 (389)
|.++.|+++|.+++++++..|+++|.+++... +.+..+.+.|+++.|+++|++++++++..++++|.+++.. ++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999998766 5888889999999999999999999999999999999988 678888
Q ss_pred HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hh
Q 016464 224 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 301 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 301 (389)
+.+.|+++.|+.++.++++.++..++++|.+|+. .++.+..+.+.|+++.|++++.+.++.++..++.+|++|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999999999999999994 566778889999999999999999999999999999999975 45
Q ss_pred hHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 302 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 302 ~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+++..++.....+.+.|+++.|+++++++++++++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred hHh
Q 016464 382 IDM 384 (389)
Q Consensus 382 ~~~ 384 (389)
...
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 643
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1.4e-27 Score=228.70 Aligned_cols=284 Identities=19% Similarity=0.204 Sum_probs=254.4
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SN 179 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~ 179 (389)
.+.|+++.|+++|.+++++++..|+++|.+++.+++..+..+...|+++.|+.++.+.+..++..|+++|.+|+... +.
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 249 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 34688999999999999999999999999999988889999999999999999999999999999999999999765 55
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016464 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
.......++++.|+.+|.++++.++..++++|.+|+... +....+...|+++.|+.++.+.+..++..|+++|.+++..
T Consensus 250 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 555566899999999999999999999999999999764 4566677789999999999999999999999999999976
Q ss_pred CC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 016464 259 QG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 336 (389)
Q Consensus 259 ~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~ 336 (389)
.+ ....+.+.|+++.|+.+|.+++..++..|+++|.+++. .+.....+++.|+++.|+.++.+.++.++..|+++|.+
T Consensus 330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 409 (530)
T 1wa5_B 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 44567788999999999999999999999999999996 55566777889999999999999999999999999999
Q ss_pred Hhhc-CH--HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 337 ICTG-DA--EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 337 l~~~-~~--~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
++.. ++ +....+.+.|+++.|+.++.++++.++..+.++|.++....+
T Consensus 410 l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 9885 34 677888899999999999999999999999999999976543
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1e-28 Score=213.58 Aligned_cols=236 Identities=24% Similarity=0.350 Sum_probs=216.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-cccccch
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 182 (389)
...+.+++.|+++|++++..|++.|.++...+.+++..+.+.|+++.|+++|++++++++..|+++|.+++. +++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 348899999999999999999999987666677888899999999999999999999999999999999998 5688888
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG- 260 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~- 260 (389)
+.+.|+++.|+.+|+++++.++..|+++|.+|+..++.+ ..+.+.|+++.|++++.+++..++..++++|.+|+..++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998887 788889999999999999999999999999999998654
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
....+.+.|+++.|++++.++++.++..|+.+|.+++. .+..+..+.+.|+++.|++++.+.+++++..|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 55667889999999999999999999999999999994 56678888899999999999999999999999999999875
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=3.3e-28 Score=210.39 Aligned_cols=236 Identities=25% Similarity=0.348 Sum_probs=218.4
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhcc-ccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHH
Q 016464 146 GAIPLLVELLSSTDPRTQEHAVTALLNLS-INDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVA 223 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~ 223 (389)
..++.+.+.|++++++++..|+++|.++. .+++.+..+.+.|+++.|+++|++++++++..|+++|.+++. +++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46899999999999999999999997754 456778888899999999999999999999999999999997 5678888
Q ss_pred HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hh
Q 016464 224 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 301 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 301 (389)
+.+.|+++.|+.++.++++.++..|+++|.+|+...+.+ ..+.+.|+++.|+++|.+++..++..|+.+|.+|+.. +.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 899999999999999999999999999999999998888 8888999999999999999999999999999999974 56
Q ss_pred hHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 302 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 302 ~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+..+.+.|+++.|++++.+.++.++..|+++|.+++..+++....+.+.|+++.|+.++.++++++++.|.++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67778889999999999999999999999999999999889999999999999999999999999999999999999864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=3.6e-26 Score=218.98 Aligned_cols=280 Identities=20% Similarity=0.182 Sum_probs=240.2
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSST-DPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~ 179 (389)
+.|.++.|+++|+++++.++..|+..|.+++. +..++..+... |+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 56789999999999999999999999999997 44566666654 8999999999765 889999999999999998889
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016464 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
+..+.+.|+++.|+++|+++++.++..|+++|.+++..+ ..+..+.+.|+++.|++++.+++.+++..++.+|.+++..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874 5667777899999999999999999999999999999985
Q ss_pred -CCchHHHHhcCCcHHHHHHHhhcCc-ccHHHHHHHHHHHhcChhhHHHhhccCChHHH---------------------
Q 016464 259 -QGNKARAVRAGIVPPLMRFLKDAGG-GMVDEALAILAILASHQEGKTAIGQAEPIPVL--------------------- 315 (389)
Q Consensus 259 -~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L--------------------- 315 (389)
++++..+.+.|+++.|+.++.+.+. ..+..+..+|.+++.++.++..+.+.|+++.|
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 5677888899999999999988554 45566788899999888887777766655544
Q ss_pred ------------------HHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHH
Q 016464 316 ------------------MEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSI 375 (389)
Q Consensus 316 ------------------~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~ 375 (389)
++++.+.+++++..|+++|++|+.++++.+..+.+.|+++.|++++.+. ++.++..|.++
T Consensus 254 l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 4455556778888899999999988888899999999999999999863 37999999999
Q ss_pred HHHHHhh
Q 016464 376 LELLQRI 382 (389)
Q Consensus 376 L~~l~~~ 382 (389)
|.+|...
T Consensus 334 L~nl~~~ 340 (529)
T 1jdh_A 334 LRHLTSR 340 (529)
T ss_dssp HHHHTSS
T ss_pred HHHHHcC
Confidence 9999653
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=223.10 Aligned_cols=280 Identities=20% Similarity=0.182 Sum_probs=243.7
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcCC-ChHHHHHHHHHHHhcccccc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSST-DPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~ 178 (389)
.+.|.++.|+++|+++++.++..|+..|.+++.+. .++..+... |+++.|++.|.++ +++++..|+.+|.+|+.+++
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 35678999999999999999999999999999855 466666654 8999999999875 89999999999999999888
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016464 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
++..+.+.|+++.|+++|+++++.++..|+++|.+++... ..+..+.+.|+++.|+++|.+++.+++..++.+|.+|+.
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764 566677789999999999999988888888999999997
Q ss_pred -CCCchHHHHhcCCcHHHHHHHhhcC-cccHHHHHHHHHHHhcChhhHHHhhccCChHHHHH------------------
Q 016464 258 -YQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLME------------------ 317 (389)
Q Consensus 258 -~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~------------------ 317 (389)
+++++..+.+.|+++.|+.++.+.+ ..++..++.+|.+++..+.++..+++.|+++.|+.
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5667888999999999999998754 45678899999999998888888887776666554
Q ss_pred ---------------------HHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-C-hHHHHHHHH
Q 016464 318 ---------------------VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-T-DRAKRKAGS 374 (389)
Q Consensus 318 ---------------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~-~~~~~~a~~ 374 (389)
++.+.+++++..|+++|.+|+..++..+..+.+.|+++.|+.++.+. + +.++..|.+
T Consensus 250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 44556777888889999999888888888999999999999999874 3 799999999
Q ss_pred HHHHHHh
Q 016464 375 ILELLQR 381 (389)
Q Consensus 375 ~L~~l~~ 381 (389)
+|.+|+.
T Consensus 330 aL~nL~~ 336 (644)
T 2z6h_A 330 ALRHLTS 336 (644)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 9999964
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=3.7e-26 Score=218.85 Aligned_cols=282 Identities=20% Similarity=0.155 Sum_probs=250.0
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-c
Q 016464 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-D 177 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~ 177 (389)
.+.+.|+++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+++|.+++.+++..++.+|.+++.. +
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 345678999999999999999999999999999998888899999999999999999999999999999999999874 5
Q ss_pred cccchhcccCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016464 178 SNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+.+..+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++..++..++++|.+|+
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 78888888999999999998764 56677889999999999899999999999999999999999999999999999999
Q ss_pred cCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHH
Q 016464 257 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAV 333 (389)
Q Consensus 257 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~ 333 (389)
....... ...++++.|++++.+.+++++..|+.+|.+|+.. ++++..+.+.|+++.|++++.+. ++.++..|+.+
T Consensus 256 ~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 256 DAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 8654322 1247799999999999999999999999999975 56888899999999999999863 37999999999
Q ss_pred HHHHhhcCH---HHHHHHHhcCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhh
Q 016464 334 LWAICTGDA---EQLKIARELDAEEALKELSESGT-DRAKRKAGSILELLQRI 382 (389)
Q Consensus 334 L~~l~~~~~---~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~ 382 (389)
|+||+..++ ..+..+.+.|+++.|+.++.+++ +.++..+.++|.++...
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999998653 35678889999999999999886 59999999999999754
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=8.4e-26 Score=221.11 Aligned_cols=282 Identities=20% Similarity=0.158 Sum_probs=249.3
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-ccc
Q 016464 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDS 178 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~ 178 (389)
+.+.|.++.|+++|+++++.++..|+++|.+++...+..+..+.+.|+++.|+++|++++..++..++.+|.+|+. +++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 4566899999999999999999999999999999888888889999999999999999999999999999999996 668
Q ss_pred ccchhcccCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016464 179 NKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
++..+.+.|+++.|+.+|++.+ ...+..++.+|++|+..+.++..+.+.|+++.|+.++.+.+..++..++++|.+|+.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 8889999999999999998764 677889999999999999999999999999999999999999999999999999997
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCC--hHHHHHHHHHH
Q 016464 258 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGS--PRNRENAAAVL 334 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~--~~~~~~a~~~L 334 (389)
...... ...++++.|+.++.+.+.++++.|+.+|.+|+.. +.++..+.+.|+++.|+.++.+.+ +.++..|+++|
T Consensus 254 ~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 654321 1236799999999999999999999999999975 567888899999999999998743 79999999999
Q ss_pred HHHhhcCH---HHHHHHHhcCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhhH
Q 016464 335 WAICTGDA---EQLKIARELDAEEALKELSESGT-DRAKRKAGSILELLQRID 383 (389)
Q Consensus 335 ~~l~~~~~---~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~ 383 (389)
.+|+..++ ..+..+.+.|+++.|++++.+++ +.+++.|.++|.+|....
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 99997543 34555888999999999999875 699999999999997543
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.94 E-value=2.8e-25 Score=220.93 Aligned_cols=279 Identities=23% Similarity=0.265 Sum_probs=244.9
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-c
Q 016464 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-S 178 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~ 178 (389)
+.+.|+++.|+.++.+++.+++..|+++|.+++...... ....++++.|+++|.+.++++++.|+++|.+|+... +
T Consensus 356 i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 446688999999999999999999999999999755331 123468999999999999999999999999998865 6
Q ss_pred ccchhcccCChHHHHHHHcc-C-CHHHHHHHHHHHHHhcCCch----hhHHHHhhCcHHHHHHHhccCCh-hhHHHHHHH
Q 016464 179 NKGTIVNAGAIPDIVDVLKN-G-SMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGTP-RGKKDAATA 251 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~-~-~~~~~~~a~~~L~~Ls~~~~----~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~ 251 (389)
.+..+.+.|+++.|+++|.+ + .+.++..|+++|++|+.... .+..+...|+++.|+.+|.+.+. .++..++++
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 77888889999999999976 3 35899999999999987542 25577788999999999998775 899999999
Q ss_pred HHHhccCCCchHHHHhcCCcHHHHHHHhhcC----------------------cccHHHHHHHHHHHhcChhhHHHhhcc
Q 016464 252 IFNLSIYQGNKARAVRAGIVPPLMRFLKDAG----------------------GGMVDEALAILAILASHQEGKTAIGQA 309 (389)
Q Consensus 252 L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~----------------------~~~~~~a~~~L~~l~~~~~~~~~i~~~ 309 (389)
|.||+..+.++..+.+.|+++.|+++|.+.+ +++++.++.+|++|+..+.++..+.+.
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 9999998888888889999999999997633 346778999999999999999999999
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
|+++.|+.++.+.++.++..|+.+|.+|+. +++.+..+.+.|+++.|+.++.+.++.+|+.|.++|.++...
T Consensus 593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999985 467888999999999999999999999999999999999863
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-25 Score=211.35 Aligned_cols=282 Identities=15% Similarity=0.114 Sum_probs=237.4
Q ss_pred cchhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-hhHH
Q 016464 101 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-------------------------------------D-NRVC 141 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~-------------------------------------~-~~~~ 141 (389)
.+.++++.|++++++ .+..+.+.++..|.|++...+ + ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 457889999999995 677889999999999875222 1 4567
Q ss_pred HHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHH---HHHHHHHHHHHhcCCc
Q 016464 142 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSME---ARENAAATLFSLSVID 218 (389)
Q Consensus 142 ~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~---~~~~a~~~L~~Ls~~~ 218 (389)
+.+.|+++.|+.++.++++.+++.|+++|.+|+.++++|..+++.|+++.|+.+|.++... .+..|+.+|.+++...
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999999999999999999999999999999999999887654 8999999999998554
Q ss_pred hhhHHHHh---hCcHHHHHHHhcc-CCh-------------hhHHHHHHHHHHhccCCC-----chHHHHhc-CCcHHHH
Q 016464 219 ENKVAIGA---AGAIPALIRLLCD-GTP-------------RGKKDAATAIFNLSIYQG-----NKARAVRA-GIVPPLM 275 (389)
Q Consensus 219 ~~~~~~~~---~~~i~~L~~ll~~-~~~-------------~~~~~a~~~L~~L~~~~~-----~~~~~~~~-~~i~~L~ 275 (389)
+....+.. .|++++|+.+|.. ... ..+..|+.+|.||+..++ .+..++.. |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 43333321 3899999999983 211 127799999999999874 36778885 9999999
Q ss_pred HHHhhcCcccHHHHHHHHHHHhcChhhH-HHhhccC------ChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHH
Q 016464 276 RFLKDAGGGMVDEALAILAILASHQEGK-TAIGQAE------PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIA 348 (389)
Q Consensus 276 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~~------~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 348 (389)
++|.+.+..++..|+.++.||+.++++. ..+.+.+ .++.|+.++++++.++|..|+++|.+++..++..++.+
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 9999988999999999999999988875 4554422 37899999999999999999999999988788787888
Q ss_pred Hhc-CcHHHHHHHHHh--CChHHHHHHHHHHHHHHhh
Q 016464 349 REL-DAEEALKELSES--GTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 349 ~~~-~~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~ 382 (389)
++. ++++.++.++++ ++++++.++..++.+|.++
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 887 899999999999 8999999999999999974
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=1.1e-24 Score=182.74 Aligned_cols=197 Identities=25% Similarity=0.336 Sum_probs=180.2
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-ccccc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNK 180 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~ 180 (389)
..+..+.|+.+|+++|++++..|+++|.+++.++++.+..+.+.|+++.|+++|.+++++++..|+++|.+++. +++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34678999999999999999999999999998889999999999999999999999999999999999999996 55778
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC-
Q 016464 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY- 258 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~- 258 (389)
..+.+.|+++.|+.+|+++++.++..|+++|.+++... +....+.+.|+++.|++++.+++..++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 88889999999999999999999999999999999754 4556778889999999999999999999999999999987
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016464 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
++.+..+.+.|+++.|++++.+.++++++.|+.+|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 5566778899999999999999999999999999999985
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=2.2e-24 Score=214.50 Aligned_cols=276 Identities=22% Similarity=0.256 Sum_probs=245.1
Q ss_pred hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-ccc
Q 016464 103 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNK 180 (389)
Q Consensus 103 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~ 180 (389)
.+.++.|++.|.++ +++++..|+.+|.+++. ..+++..+.+.|+++.|+++|+++++.++..|+++|.+|+.+. ..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47899999999865 89999999999999987 5677888999999999999999999999999999999999864 566
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCCh-hhHHHHHHHHHHhccC
Q 016464 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIY 258 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~L~~~ 258 (389)
..+.+.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+.+.|+++.|+.++++.+. ..+..++.+|.+|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 6777899999999999999999999999999999864 6788888888999999999987754 4566789999999999
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016464 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
..++..+++.|+++.|+.++.+.+..++..++.+|.+|+...... ....++++.|++++.+.++.++..|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999988899999999999999765431 223468999999999999999999999999999
Q ss_pred hcCHHHHHHHHhcCcHHHHHHHHHhC-C-hHHHHHHHHHHHHHHh
Q 016464 339 TGDAEQLKIARELDAEEALKELSESG-T-DRAKRKAGSILELLQR 381 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~L~~ll~~~-~-~~~~~~a~~~L~~l~~ 381 (389)
..+++.+..+.+.|+++.|+.++.+. + +.++..|.++|.+|+.
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 99888999999999999999999873 4 4899999999999974
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=2.9e-24 Score=180.27 Aligned_cols=197 Identities=25% Similarity=0.345 Sum_probs=180.2
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCch
Q 016464 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNK 262 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~-~~~~~ 262 (389)
..++.+.|+.+|++++++++..|+++|.+++. .++.+..+.+.|+++.|+++|.++++.++..|+++|.+++. +++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 46788999999999999999999999999995 45677888889999999999999999999999999999996 45577
Q ss_pred HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016464 263 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
..+++.|+++.|+.+|.++++.++..|+++|.+++. .+..+..+.+.|+++.|++++++.++.++..|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999999999999999995 5556678889999999999999999999999999999999988
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 342 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
++....+.+.|+++.|+.++.++++++++.|.++|.+|++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999874
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=183.93 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=173.9
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-cccccc
Q 016464 105 AIDALLGKLANGNV--EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKG 181 (389)
Q Consensus 105 ~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~ 181 (389)
.++.++++|.++++ +++..|++.|.+++.++++++..+.+.|+||.|+++|+++++++++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999999987 889999999999999999999999999999999999999999999999999999998 568999
Q ss_pred hhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc----------------cCChhh
Q 016464 182 TIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC----------------DGTPRG 244 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~ 244 (389)
.+.+.|+|+.|+++|. +++.++++.|+.+|++|+..+.++..+.+ ++++.|++++. ..+.++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 57899999999999999999999988886 46999998763 125689
Q ss_pred HHHHHHHHHHhccCC-CchHHHHhc-CCcHHHHHHHhhc------CcccHHHHHHHHHHHhcC
Q 016464 245 KKDAATAIFNLSIYQ-GNKARAVRA-GIVPPLMRFLKDA------GGGMVDEALAILAILASH 299 (389)
Q Consensus 245 ~~~a~~~L~~L~~~~-~~~~~~~~~-~~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~ 299 (389)
+++|..+|.||+..+ ++|..+.+. |+|+.|+.+++.. +...++.++.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999854 788889886 6689999999872 567899999999999864
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.8e-23 Score=194.83 Aligned_cols=278 Identities=13% Similarity=0.129 Sum_probs=228.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcC-CChHHHHHHHHHHHhcccccc--
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS-TDPRTQEHAVTALLNLSINDS-- 178 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~-- 178 (389)
....+.+.++|.+++.+.+..|++.|..++. .++.|+.+++. |+++.|+++++. ++..+...++.+|.|++.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3578888999998887789999999999997 67788888876 679999999995 678899999999999977322
Q ss_pred -------------------------------------ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 016464 179 -------------------------------------NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 221 (389)
Q Consensus 179 -------------------------------------~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 221 (389)
++..+.+.|+++.|+.+++++++.++..|+++|.+|+.+.+++
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 2345668999999999999999999999999999999999999
Q ss_pred HHHHhhCcHHHHHHHhccCChh---hHHHHHHHHHHhccCCCchHHHHh---cCCcHHHHHHHhh-cCcc----------
Q 016464 222 VAIGAAGAIPALIRLLCDGTPR---GKKDAATAIFNLSIYQGNKARAVR---AGIVPPLMRFLKD-AGGG---------- 284 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~L~~L~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~~---------- 284 (389)
..+++.|+++.|++++.+.... .+..|+.+|.+++...+....+-. .|++++|+++|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999887544 799999999999865543332211 3889999999983 2211
Q ss_pred --c-HHHHHHHHHHHhcCh-----hhHHHhhcc-CChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHH-HHHHhc---
Q 016464 285 --M-VDEALAILAILASHQ-----EGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL-KIAREL--- 351 (389)
Q Consensus 285 --~-~~~a~~~L~~l~~~~-----~~~~~i~~~-~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~--- 351 (389)
+ +..|+.+|.||+..+ +.+..++.+ |+++.|..++.+++..+|..|+++++||+... +.. +.+...
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~ 650 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENP 650 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCc
Confidence 1 678999999999876 347778885 99999999999999999999999999999854 332 233322
Q ss_pred ---CcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 352 ---DAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 352 ---~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+.++.|+.++..++.++|+.|.++|.++...
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 2478999999999999999999999999643
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=172.42 Aligned_cols=192 Identities=20% Similarity=0.166 Sum_probs=170.9
Q ss_pred ChHHHHHHHccCCH--HHHHHHHHHHHHhcC-CchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCchH
Q 016464 188 AIPDIVDVLKNGSM--EARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKA 263 (389)
Q Consensus 188 ~l~~L~~lL~~~~~--~~~~~a~~~L~~Ls~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~ 263 (389)
.++.++++|.++++ +++..|+++|.+|+. +++++..+.+.|+|+.|+++|.++++++++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 888999999999995 45788899999999999999999999999999999999998 467889
Q ss_pred HHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh---c-------------CChHH
Q 016464 264 RAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR---T-------------GSPRN 326 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~---~-------------~~~~~ 326 (389)
.+.+.|+|+.|+++|.+ .+.++++.|+.+|++|+..+.++..+.+. +++.|++++. + .++++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 99999999999999985 68899999999999999999999988875 6898888652 1 25689
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhc-CcHHHHHHHHHhC------ChHHHHHHHHHHHHHH
Q 016464 327 RENAAAVLWAICTGDAEQLKIAREL-DAEEALKELSESG------TDRAKRKAGSILELLQ 380 (389)
Q Consensus 327 ~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~~------~~~~~~~a~~~L~~l~ 380 (389)
+++|..+|.||+..+++.++.+.+. |+++.|+.+++.+ +...++.+.-+|++|+
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999999999888899999876 6789999999763 5689999999999986
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=2.8e-21 Score=168.78 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=174.7
Q ss_pred cchhHHHHHHHhhcCCC------------HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHH-HhcCCChHHHHHHH
Q 016464 101 CDRAAIDALLGKLANGN------------VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAV 167 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~-lL~~~~~~~~~~a~ 167 (389)
.+...++..+..|.+++ .+.+..|+..|..++. +.++...+.+.|+++.|+. +|.++++.++..|+
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 34566788888887652 3578889999999997 6678888899999999999 99999999999999
Q ss_pred HHHHhccccc-cccchhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhh
Q 016464 168 TALLNLSIND-SNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRG 244 (389)
Q Consensus 168 ~~L~~l~~~~-~~~~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~ 244 (389)
++|++++.+. ..+..+++.|+++.|+.+|++ ++..++..|+|+|++++... +....+...|+++.|+.+|.+++..+
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 9999998865 678888899999999999986 48899999999999998764 45667778899999999999999999
Q ss_pred HHHHHHHHHHhccC-CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016464 245 KKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 245 ~~~a~~~L~~L~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
+..|+++|.+|+.. ++.+..+++.|+++.|+.+|.+++..+++.|+.+|.+|+..
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999875 45678889999999999999999999999999999999976
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=3.6e-21 Score=168.07 Aligned_cols=183 Identities=18% Similarity=0.151 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHH-HhccCChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHH
Q 016464 200 SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRF 277 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~l 277 (389)
+.+.+..|+..|.+++.+.++...+...|+++.|+. +|.++++.++..|+++|++++.+++ .+..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 346788899999999998888888889999999999 9999999999999999999998654 66778899999999999
Q ss_pred Hhh-cCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHH
Q 016464 278 LKD-AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEE 355 (389)
Q Consensus 278 l~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 355 (389)
|.+ ++..+++.|+++|.+|+. ++.....+.+.|+++.|+.+|++++..++..|+++|.+|+.++++.+..+.+.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 996 477899999999999996 456677888899999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 356 ALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 356 ~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.|+.++.++++.+++.|..+|.+|...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999766
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=1.3e-20 Score=135.52 Aligned_cols=76 Identities=34% Similarity=0.465 Sum_probs=69.8
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
...+|++|.||||+++|.|||+++|||+||+.||.+|+.. ..+||.|+.++....+.+|..+++.|+.|...++..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 98 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS 98 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTCC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhhc
Confidence 3468999999999999999999999999999999999984 678999999999999999999999999999877643
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.82 E-value=3.5e-20 Score=132.71 Aligned_cols=76 Identities=30% Similarity=0.404 Sum_probs=70.4
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCc-cCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~-h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
...+|++|.||||+++|.|||+++|| |+|||.||.+|+.. ..+||.|+.++....+.+|..+++.|+.|+..++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 34689999999999999999999999 99999999999986 678999999999889999999999999999988765
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=132.00 Aligned_cols=75 Identities=33% Similarity=0.465 Sum_probs=68.8
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 80 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~ 80 (389)
...+|++|.||||+++|.|||+++|||+||+.||.+|+.. ..+||.|+.++....+.+|..++++|+.|...++.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 3568999999999999999999999999999999999985 67899999999988999999999999999887643
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.81 E-value=3.5e-20 Score=128.37 Aligned_cols=76 Identities=86% Similarity=1.429 Sum_probs=70.4
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 80 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~ 80 (389)
+..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++++++.|.+.++.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999999999999987678899999999888899999999999999988765
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.79 E-value=1.2e-19 Score=143.26 Aligned_cols=77 Identities=34% Similarity=0.509 Sum_probs=71.2
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
...+|++|.||||+++|.|||+++|||+||+.||..|+..++.+||.|+.++....+.||..++++|+.|+..+++.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 45689999999999999999999999999999999999875457999999999889999999999999999998875
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-18 Score=122.18 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=64.6
Q ss_pred CCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcC-----CCCCCC--CCcc-CcCCCCCccHHHHHHHHHHHHh
Q 016464 7 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-----HKTCPK--TQQT-LLHTALTPNYVLKSLIALWCEN 77 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~-----~~~cp~--c~~~-~~~~~~~~n~~~~~~i~~~~~~ 77 (389)
..+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +....+.+|..+++.|+.|...
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999853 468999 7665 7778899999999999999876
Q ss_pred cCC
Q 016464 78 NGV 80 (389)
Q Consensus 78 ~~~ 80 (389)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 553
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=5.8e-18 Score=148.31 Aligned_cols=78 Identities=33% Similarity=0.509 Sum_probs=71.5
Q ss_pred CCCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016464 4 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
....+|++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.+++...+.||..++..|+.|+..+++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 345688999999999999999999999999999999999876666999999999889999999999999999988764
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=117.76 Aligned_cols=79 Identities=28% Similarity=0.511 Sum_probs=68.8
Q ss_pred CCCCCCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhc-CCCCCCCCCccC-cCCCCCccHHHHHHHHHHHHhcC
Q 016464 3 HRSPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDA-GHKTCPKTQQTL-LHTALTPNYVLKSLIALWCENNG 79 (389)
Q Consensus 3 ~~~~~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~-~~~~cp~c~~~~-~~~~~~~n~~~~~~i~~~~~~~~ 79 (389)
+....++++++||||.++|.+|++++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++++.|....+
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999 9999999999999975 347899999997 56678899999999999988765
Q ss_pred CC
Q 016464 80 VE 81 (389)
Q Consensus 80 ~~ 81 (389)
..
T Consensus 85 ~~ 86 (92)
T 3ztg_A 85 YT 86 (92)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=5.2e-15 Score=138.29 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=222.3
Q ss_pred cchhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhChh-----------------hhHHHH-hcCCHHHHHHHhcCCCh
Q 016464 101 CDRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNAD-----------------NRVCIA-EAGAIPLLVELLSSTDP 160 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~-~~g~v~~L~~lL~~~~~ 160 (389)
+...+++.|+..|+.+ |.++...++.+|.++...+++ +.+.+. +.+.++.|+.+|+..+.
T Consensus 57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df 136 (651)
T 3grl_A 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF 136 (651)
T ss_dssp HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH
T ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH
Confidence 4567899999999864 788899999999887653322 223343 45789999999999999
Q ss_pred HHHHHHHHHHHhccccc--cccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh-hCcHHHHHHH
Q 016464 161 RTQEHAVTALLNLSIND--SNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRL 236 (389)
Q Consensus 161 ~~~~~a~~~L~~l~~~~--~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~-~~~i~~L~~l 236 (389)
.+|..++..|..|+... ..++.+. ..++++.|+.+|++..+.+|..++.+|.+|+..+....+++. .|+++.|+++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 99999999999998755 3677777 579999999999999999999999999999988766555554 5999999999
Q ss_pred hccCCh----hhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhhcCcc------cHHH---HHHHHHHHhcC---
Q 016464 237 LCDGTP----RGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGG------MVDE---ALAILAILASH--- 299 (389)
Q Consensus 237 l~~~~~----~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~------~~~~---a~~~L~~l~~~--- 299 (389)
+..+.. .+...++.+|.||...+. |+..+.+.|+++.|..++...++. ...+ ++.++.-+...
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~ 296 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 986543 678899999999998654 888899999999999999754332 2223 56666666542
Q ss_pred ----hhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhcCHHHHHHHHhcC---------cHHHHHHHHHhC
Q 016464 300 ----QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELD---------AEEALKELSESG 364 (389)
Q Consensus 300 ----~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~~~~L~~ll~~~ 364 (389)
..++..+.+.|++..|++++... ...++..|+.+++.+..+++..+..+.+.. ++..|+.++.+.
T Consensus 297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 24678899999999999999875 578899999999999999998888887653 333344444444
Q ss_pred -ChHHHHHHHHHHHHHHhh
Q 016464 365 -TDRAKRKAGSILELLQRI 382 (389)
Q Consensus 365 -~~~~~~~a~~~L~~l~~~ 382 (389)
...+|..|..+++.....
T Consensus 377 ~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHhC
Confidence 578899999999888643
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=8.9e-15 Score=136.71 Aligned_cols=277 Identities=15% Similarity=0.179 Sum_probs=219.4
Q ss_pred chhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccc-cc
Q 016464 102 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSI-ND 177 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~-~~ 177 (389)
..+.|+.|...+.+. -.+.|..|+..|..++++ ++.. +..++++.|+..|+.+ |.++...++.+|.++.. ++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 457899999999865 578899999999999864 3333 3456899999999875 78888999999988644 22
Q ss_pred cc-----------------cchh-cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHHHh-hCcHHHHHHH
Q 016464 178 SN-----------------KGTI-VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGA-AGAIPALIRL 236 (389)
Q Consensus 178 ~~-----------------~~~i-~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~~~~-~~~i~~L~~l 236 (389)
+. .+.+ .+.+.++.|+.+|++.+..++..++.+|..|+...+ .+..+.. .++++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 11 1122 256789999999999999999999999999987654 5666664 4999999999
Q ss_pred hccCChhhHHHHHHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhcCc----ccHHHHHHHHHHHhc-ChhhHHHhhccC
Q 016464 237 LCDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGG----GMVDEALAILAILAS-HQEGKTAIGQAE 310 (389)
Q Consensus 237 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~-~~~~~~~i~~~~ 310 (389)
|.+..+.+|..++.+|.+|+.++.+.++++. +|+++.|++++..... .+.+.++.+|.||.. ++.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999998887766665 6999999999988543 678899999999996 456899999999
Q ss_pred ChHHHHHHHhcCCh------HHHHH---HHHHHHHHhhc------CHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHH
Q 016464 311 PIPVLMEVIRTGSP------RNREN---AAAVLWAICTG------DAEQLKIARELDAEEALKELSESG--TDRAKRKAG 373 (389)
Q Consensus 311 ~v~~L~~ll~~~~~------~~~~~---a~~~L~~l~~~------~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~ 373 (389)
+++.|..++....+ +...+ ++.++.-|+.. .+.++..+.+.|++..|++++.+. ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975432 12223 55566666554 246788899999999999998876 577888888
Q ss_pred HHHHHHHhh
Q 016464 374 SILELLQRI 382 (389)
Q Consensus 374 ~~L~~l~~~ 382 (389)
.++..+.+.
T Consensus 335 ~tla~~irg 343 (651)
T 3grl_A 335 NTVSEVIRG 343 (651)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887654
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=120.09 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=62.4
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC-CCCCccHHHHHHHHHHHHh
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-TALTPNYVLKSLIALWCEN 77 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~-~~~~~n~~~~~~i~~~~~~ 77 (389)
++++++||||.+.+.+|++++|||+||+.||..|+..+...||.|+.++.. ..+.+|..+..+++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 356789999999999999999999999999999998666789999999986 6788999999999888543
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.61 E-value=2.5e-14 Score=125.13 Aligned_cols=228 Identities=16% Similarity=0.086 Sum_probs=168.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
+...++.|++.|.++++.++..|++.|..+.. .+.++.|++++.++++.+|..|+++|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 34568999999999999999999999998862 2367899999999999999999999998864322110
Q ss_pred hhcccCChHHHH-HHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016464 182 TIVNAGAIPDIV-DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 182 ~i~~~g~l~~L~-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
..++.|. .+++++++.++..++++|.++...... ....+++.|+.++.++++.++..++.+|.++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 1233343 245678899999999999988632211 123467888889999999999999999987743
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
.+.++.|+.++.++++.++..|+.+|..+.... ...++.|+.++.+.++.+|..|+.+|.++..
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-
Confidence 357899999999888899999999998885322 1356788888888888899999988888752
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 341 DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
...++.|..++.+++ ++..|.++|..+.
T Consensus 222 ----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred ----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 235666666665533 6666666666654
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.58 E-value=7e-16 Score=119.97 Aligned_cols=69 Identities=25% Similarity=0.491 Sum_probs=62.3
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC-CCCccHHHHHHHHHHHH
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT-ALTPNYVLKSLIALWCE 76 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~-~~~~n~~~~~~i~~~~~ 76 (389)
+++.+.||||.+.+.+|++++|||+||+.||.+|+..+.+.||.|+.++... .+.+|..++.+++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999997667899999999877 78899999999998853
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.58 E-value=1.3e-13 Score=115.26 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=162.2
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 180 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 180 (389)
.+.+.++.|++.|.++++.++..|+..|..+.. .+.++.|+++|.++++.+|..|+.+|..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------ 78 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------ 78 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC------
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence 356789999999999999999999999998753 257899999999999999999999998874
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016464 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
..+.++.|+++|.++++.++..++.+|..+.. .+.++.|+.++.++++.++..++.+|.++..
T Consensus 79 ----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 ----DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 24678999999999999999999999998853 3578999999999999999999999998842
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
...++.|..++.++++.++..|+.+|..+.. ...++.|..++++.++.+|..|..+|.++...
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 3478899999999999999999999999853 23678899999999999999999999988775
Q ss_pred CH
Q 016464 341 DA 342 (389)
Q Consensus 341 ~~ 342 (389)
..
T Consensus 205 ~~ 206 (211)
T 3ltm_A 205 NH 206 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=1.8e-13 Score=114.33 Aligned_cols=189 Identities=22% Similarity=0.230 Sum_probs=160.4
Q ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHH
Q 016464 145 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 224 (389)
Q Consensus 145 ~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~ 224 (389)
.+.++.|++.|.++++.+|..|+..|..+.. .+.++.|+++|.++++.++..++.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4678999999999999999999999987642 4689999999999999999999999998752
Q ss_pred HhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHH
Q 016464 225 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 304 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 304 (389)
.+.++.|+.++.++++.++..++++|..+.. .+.++.|+.++.++++.++..|+.+|..+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 4578999999999999999999999998843 3578899999999999999999999999853
Q ss_pred HhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016464 305 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 305 ~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
...++.|..++.+.++.++..|+.+|..+.. ...++.|..+++++++.+|..|.++|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478899999999999999999999998853 2367789999999999999999999999876543
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.56 E-value=4e-13 Score=111.24 Aligned_cols=187 Identities=23% Similarity=0.234 Sum_probs=162.4
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 180 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 180 (389)
.+.+..+.+++.|.++++.++..|+..|..+.. .+.++.|+++|.++++.+|..|+.+|..+.
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------ 73 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------ 73 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------
Confidence 456789999999999999999999999998753 247899999999999999999999998764
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016464 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
..+.++.|+.+|.++++.++..|+++|..+.. ...++.|+.++.++++.++..++++|..+..
T Consensus 74 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 ----DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 24678999999999999999999999998753 3578899999999999999999999998842
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
...++.|..++.++++.++..|+.+|..+.. ...++.|..++.+.++.++..|..+|.++.
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999843 236788999999999999999999998764
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=110.48 Aligned_cols=70 Identities=23% Similarity=0.403 Sum_probs=60.7
Q ss_pred CCCCCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHh
Q 016464 8 IPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 77 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~ 77 (389)
+.+++.||||++.+.+|++ ++|||+||+.||.+|+......||.||.++....+..+..+..+++.+.+.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4567899999999999999 999999999999999997557899999999888888888887777776443
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=6.8e-13 Score=109.85 Aligned_cols=185 Identities=23% Similarity=0.236 Sum_probs=159.8
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016464 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
+..+.++++|.++++.+|..|+.+|..+.. .+.++.|+++|.++++.++..++.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 567899999999999999999999987642 3678999999999999999999999988742
Q ss_pred hhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHH
Q 016464 226 AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 305 (389)
Q Consensus 226 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 305 (389)
...++.|+.++.++++.++..++++|..+.. ...++.|+.++.++++.++..|+.+|+.+..
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 3578999999999999999999999998743 3478899999999999999999999998853
Q ss_pred hhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 306 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 306 i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
...++.|..++.+.++.++..|+.+|..+.. + ..++.|..++.++++.+|..|.++|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 2478899999999999999999999998842 2 367788899999999999999999988753
No 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=97.02 Aligned_cols=56 Identities=16% Similarity=0.453 Sum_probs=49.5
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 60 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~ 60 (389)
...+++.+.||||++.+.+|+.++|||+||+.||.+|+..+...||.|+.++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34578899999999999999999999999999999999755678999999886554
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-16 Score=108.17 Aligned_cols=64 Identities=27% Similarity=0.520 Sum_probs=54.9
Q ss_pred CCCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcC------CCCCCCCCccCcCCCCCccHHH
Q 016464 4 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG------HKTCPKTQQTLLHTALTPNYVL 67 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~------~~~cp~c~~~~~~~~~~~n~~~ 67 (389)
....+++++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 345688999999999999999999999999999999999852 5689999999887766666544
No 59
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=3.7e-15 Score=107.96 Aligned_cols=69 Identities=26% Similarity=0.456 Sum_probs=61.5
Q ss_pred CCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhc
Q 016464 9 PDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 78 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~ 78 (389)
++++.||||.+.+.+|+++ +|||+||+.||.+|+.. ...||.|+.++....+.+|..+.++++.+....
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 3458999999999999987 89999999999999985 568999999998888899999999999986643
No 60
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.52 E-value=2.1e-13 Score=137.73 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=198.8
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHH----hcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA----EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
.+.++.|++.+.++++.++..++.+|..++...+.....-. -...++.|++.+++.+.++|..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 35799999999999999999999999999875443211000 12357777888888899999999999998775432
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016464 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
....-.-.++++.+...+.+++++++..++++|..++...+..-.-.-.++++.++..+.+.++.++..|+..+..++..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 11111113578889999999999999999999999976543211111125778888888888999999999999999876
Q ss_pred CCchHHHHhc---CCcHHHHHHH-----------hh-----------cCcccHHHHHHHHHHHhcChhhHHHhhccCChH
Q 016464 259 QGNKARAVRA---GIVPPLMRFL-----------KD-----------AGGGMVDEALAILAILASHQEGKTAIGQAEPIP 313 (389)
Q Consensus 259 ~~~~~~~~~~---~~i~~L~~ll-----------~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~ 313 (389)
...+. .... .+++.++..+ .+ .+..++..|..+|..++.... ..+.. ..++
T Consensus 287 ~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~ 362 (852)
T 4fdd_A 287 PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HILP 362 (852)
T ss_dssp TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HHHH
Confidence 53322 2221 3456666665 22 123468889999998885432 12222 3677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 314 VLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+..++.+.++.+|..|+.+|.+++.+..+.... .-.++++.|+.++.+.++.+|..|.++|..+++.
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999877543332 2245788899999999999999999999998874
No 61
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=3.6e-15 Score=105.08 Aligned_cols=63 Identities=29% Similarity=0.604 Sum_probs=54.2
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcC-----CCCCCCCCccCcCCCCCccHHH
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG-----HKTCPKTQQTLLHTALTPNYVL 67 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~-----~~~cp~c~~~~~~~~~~~n~~~ 67 (389)
...+.+++.||||.+.+.+|+.++|||+||+.||.+|+... ...||.|+.++....+.+|..+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 34578899999999999999999999999999999999862 5689999999887777666544
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.7e-15 Score=121.10 Aligned_cols=70 Identities=17% Similarity=0.376 Sum_probs=62.0
Q ss_pred CCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhc-CCCCCCC--CCccCcCCCCCccHHHHHHHHHHHHh
Q 016464 8 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVLKSLIALWCEN 77 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~-~~~~cp~--c~~~~~~~~~~~n~~~~~~i~~~~~~ 77 (389)
...+|+||||+++|.+||+. .|||+||+.||.+||.. +.+.||+ |+..+....+.+|..+.++++.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 45669999999999999984 99999999999999985 3468999 99999988999999999999888553
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.50 E-value=3.4e-15 Score=111.37 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=59.8
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC-------CCCCccHHHHHHHHHHH
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-------TALTPNYVLKSLIALWC 75 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~-------~~~~~n~~~~~~i~~~~ 75 (389)
....+++.||||.+.+.+|++++|||+||+.||.+|+..+...||.|+..+.. ..+..|..+...++.+.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34566799999999999999999999999999999998767889999998763 45667888888887764
No 64
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=98.12 Aligned_cols=54 Identities=31% Similarity=0.646 Sum_probs=47.2
Q ss_pred CCCCCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcC-CCCCCCCCccCc
Q 016464 4 RSPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-HKTCPKTQQTLL 57 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~ 57 (389)
....+++++.||||++.|.+|++++ |||+||+.||.+|+... ...||.|+.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456788899999999999999999 99999999999999853 368999998754
No 65
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.50 E-value=1.1e-14 Score=107.29 Aligned_cols=67 Identities=15% Similarity=0.382 Sum_probs=58.4
Q ss_pred CCCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCC----CCCccHHHHHHHHHH
Q 016464 7 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLIALW 74 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~----~~~~n~~~~~~i~~~ 74 (389)
.+++++.||||.+.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+..++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 356789999999999999997 99999999999999986 47899999998765 567888888888776
No 66
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=100.79 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=51.6
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHH
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVL 67 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~ 67 (389)
.....+.+.||||++.+.+|++++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHH
Confidence 3456778999999999999999999999999999999985 568999999986 455566444
No 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.50 E-value=8.1e-15 Score=109.68 Aligned_cols=69 Identities=26% Similarity=0.555 Sum_probs=61.6
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
..+++.+.||||++.+.+|++++|||+||+.||.+|+..+...||.|+.++....+.++..+.+.+..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 457788999999999999999999999999999999987566899999999888788888888877765
No 68
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=9.7e-14 Score=140.18 Aligned_cols=275 Identities=14% Similarity=0.060 Sum_probs=196.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc-c
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-G 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~ 181 (389)
...++.+++.+++++++++..|+++|..+....+... .-.-.+.++.+..++.++++++|..|+++|..++...... .
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4577888888888999999999999988775432211 0001246788888888999999999999999998643221 1
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh--hCcHHHHHHHh-----------cc---------
Q 016464 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLL-----------CD--------- 239 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~--~~~i~~L~~ll-----------~~--------- 239 (389)
... .++++.++..+++.++.++..|+.++..++.....+..+.. ...++.++..+ .+
T Consensus 252 ~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 252 PHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 111 24788888899999999999999999999876533332211 24566666666 22
Q ss_pred --CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHH
Q 016464 240 --GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME 317 (389)
Q Consensus 240 --~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ 317 (389)
.+..++..++.+|..++...+. .+ -..+++.+.+++.+.+..+++.|+.+|++++........-.-.+.++.++.
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~ 407 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQ 407 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 1234688888899888764321 11 123567777788888899999999999999976543222222457889999
Q ss_pred HHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 318 VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 318 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+.+.++.+|..|+++|.+++...+.......-.++++.|+..+.++++.+|..|.++|.++.+.
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998874221111111125778888888888999999999999999764
No 69
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=96.20 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCCCCCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016464 4 RSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
....+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+.++...+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccc
Confidence 345578889999999999999997 99999999999999986 568999999987665544
No 70
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.7e-15 Score=104.06 Aligned_cols=62 Identities=23% Similarity=0.591 Sum_probs=54.0
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc-----CCCCCCCCCccCcCCCCCccHHH
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-----GHKTCPKTQQTLLHTALTPNYVL 67 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~-----~~~~cp~c~~~~~~~~~~~n~~~ 67 (389)
..+.+.+.||||.+.+.+|+.++|||+||+.|+..|+.. +...||.|+..+....+.+|..+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 457888999999999999999999999999999999975 35689999999987777776544
No 71
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=1e-14 Score=109.00 Aligned_cols=67 Identities=19% Similarity=0.417 Sum_probs=59.9
Q ss_pred CCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHh
Q 016464 8 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 77 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~ 77 (389)
+.+++.||||++++.+|+++ +|||+||+.||.+|+. ..||.|+.++....+.+|..+..++..+...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 35679999999999999998 9999999999999987 6799999999888899999999998887543
No 72
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=95.74 Aligned_cols=55 Identities=24% Similarity=0.621 Sum_probs=48.4
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCCCccCcCCC
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTA 60 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~~~~ 60 (389)
..+++.+.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+.++....
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 457888999999999999999999999999999999973 4568999999886554
No 73
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.47 E-value=2.7e-12 Score=112.07 Aligned_cols=201 Identities=12% Similarity=0.072 Sum_probs=160.3
Q ss_pred HhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH
Q 016464 143 AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 222 (389)
Q Consensus 143 ~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 222 (389)
.+.+.++.|++.|.++++.+|..|+++|.++. ..+.++.|+.+|.++++.++..|+++|..+........
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 34578999999999999999999999999875 24578999999999999999999999999875433211
Q ss_pred HHHhhCcHHHHHH-HhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016464 223 AIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 223 ~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
..++.|.+ ++.+++..++..++++|.++...... .....++.|+.++.++++.++..|+.+|+++..
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 13344442 45678899999999999998643211 122457889999999999999999999987754
Q ss_pred hHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 302 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 302 ~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+.++.|+.++.+.++.++..|+++|..+...++ .+++.|..++.++++.+|..|.++|..+..
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 2589999999999999999999999999864443 356788889999999999999999998863
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.6e-14 Score=91.81 Aligned_cols=47 Identities=26% Similarity=0.683 Sum_probs=42.4
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCC
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 52 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c 52 (389)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457889999999999999999999999999999999984 45689987
No 75
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.46 E-value=2e-14 Score=114.55 Aligned_cols=70 Identities=24% Similarity=0.551 Sum_probs=60.1
Q ss_pred CCCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCc-CCCCCccHHHHHHHHHHHH
Q 016464 7 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~-~~~~~~n~~~~~~i~~~~~ 76 (389)
.+.+.+.||||++.+.+|+++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..+..++..+..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345567999999999999987 999999999999999976788999999985 4567889999999988743
No 76
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=3.5e-14 Score=109.32 Aligned_cols=64 Identities=20% Similarity=0.491 Sum_probs=52.1
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHH
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWC 75 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~ 75 (389)
.++++||||.+.+.+|++++|||+||+.||.+|+.. ...||.||.++... ..+..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 456899999999999999999999999999999985 56799999988543 23555566666554
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.44 E-value=2.5e-14 Score=92.20 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=47.7
Q ss_pred CCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccH
Q 016464 11 DFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 65 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~ 65 (389)
.|.||||+++|.|||.+ +|||+|||.||++|+..+ .+||.+++++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999998 899999999999999863 4699999999888877654
No 78
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=7.6e-14 Score=92.41 Aligned_cols=54 Identities=24% Similarity=0.497 Sum_probs=47.1
Q ss_pred CCCcCcCCcc-cCcCC----eecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016464 10 DDFRCPISLE-LMKDP----VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 10 ~~~~Cpic~~-~~~~p----v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++....+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 5789999999 99999 468999999999999999876678999999988766654
No 79
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.43 E-value=2e-13 Score=92.88 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCcCcCCcccC--cCCeecC--CccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016464 1 MKHRSPVIPDDFRCPISLELM--KDPVIVS--TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 1 ~~~~~~~~~~~~~Cpic~~~~--~~pv~~~--c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
|......+.++++||||.+.+ .|+++++ |||+||+.|+.+++..+...||.||.++....+
T Consensus 1 ms~~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCSCSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CCccccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 566677889999999999988 4566665 999999999999997667889999998875543
No 80
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=9.7e-14 Score=103.15 Aligned_cols=66 Identities=24% Similarity=0.508 Sum_probs=54.1
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcC--CCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~--~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
.+.+.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+...++.+
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~ 86 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEEL 86 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHH
Confidence 4568999999999999999999999999999999853 35899999999877777665554444443
No 81
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.41 E-value=2.1e-14 Score=110.22 Aligned_cols=68 Identities=13% Similarity=0.365 Sum_probs=55.9
Q ss_pred CCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC---------CCCCccHHHHHHHHHH
Q 016464 7 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH---------TALTPNYVLKSLIALW 74 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~---------~~~~~n~~~~~~i~~~ 74 (389)
.+++.|.||||.+++.+|++++|||+||+.||.+|+..+...||.|+.++.. ..+.++..+++.+.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 4678899999999999999999999999999999998766789999987532 2344677777766653
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=87.30 Aligned_cols=48 Identities=27% Similarity=0.734 Sum_probs=42.6
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 52 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c 52 (389)
...+.+.+.||||++.+.+|+.++|||+||+.||.+|+.. +...||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4457788999999999999999999999999999999864 56789987
No 83
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.39 E-value=1.9e-12 Score=121.25 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=191.4
Q ss_pred hhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccc
Q 016464 103 RAAIDALLGKLANG--NVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 103 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~ 177 (389)
.+.++.|++.+.++ ++.++..|+.+|..++... ++..... -..+++.++..+.+. +..+|..|+.++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35889999999988 8999999999999999754 2211111 124778889999887 7899999999999865321
Q ss_pred c-c-cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 178 S-N-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 178 ~-~-~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
+ . .......-+++.+...+.+++++++..++.+|..+....... ......++++.++..+.+.++.++..++..+..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1 0 001111124666677777889999999999999987543211 011111677788888888889999999999988
Q ss_pred hccCCC------------------chHHHHh---cCCcHHHHHHHhh-------cCcccHHHHHHHHHHHhcChhhHHHh
Q 016464 255 LSIYQG------------------NKARAVR---AGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 255 L~~~~~------------------~~~~~~~---~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~i 306 (389)
++.... ....+.+ ..+++.+++.+.. .+..++..|..+|..++..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 875420 0111121 3355666666643 234678899999999885432 122
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 307 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
. ..+++.+...+.+.+..+|..|+.+|..++.+.. +..... -..+++.|+..+.++++.+|..|.++|..+...-
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2356677777788889999999999999997542 111111 1468899999999999999999999999998753
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.9e-13 Score=94.22 Aligned_cols=56 Identities=25% Similarity=0.527 Sum_probs=48.8
Q ss_pred CCCCCCCCCcCcCCcccCcC----CeecCCccCccHHHHHHHHhcC--CCCCCCCCccCcCC
Q 016464 4 RSPVIPDDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHT 59 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~----pv~~~c~h~~c~~ci~~~~~~~--~~~cp~c~~~~~~~ 59 (389)
....+.+.+.||||.+.+.+ |+.++|||+||+.||.+|+... ...||.|+.++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34567888999999999999 9999999999999999999864 46899999987654
No 85
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=109.78 Aligned_cols=69 Identities=26% Similarity=0.555 Sum_probs=60.8
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
..+++.|.||||+++|.+|++++|||+||+.||.+|+..+...||.|+.++....+.++..+.+.+.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 357888999999999999999999999999999999986566899999999887788888887777664
No 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.37 E-value=1.1e-13 Score=103.41 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=54.8
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCC-ccHHHHHHHHHH
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT-PNYVLKSLIALW 74 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~-~n~~~~~~i~~~ 74 (389)
+++++.||||.+.+.+|+.++|||+||+.||.+|+..+...||.|+.++....+. ++..+...+..+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 4566899999999999999999999999999999987567899999998866644 445555555443
No 87
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.8e-13 Score=91.59 Aligned_cols=59 Identities=20% Similarity=0.457 Sum_probs=49.7
Q ss_pred CCCCCCCCcCcCCcccCcCC-------eecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCcc
Q 016464 5 SPVIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 64 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~p-------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n 64 (389)
+....+++.||||.+.+.+| +.++|||+||+.||.+|+.. ...||.|+.++....+.++
T Consensus 4 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp --CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 34567889999999999998 78999999999999999986 4689999999887666543
No 88
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.36 E-value=6.8e-11 Score=114.16 Aligned_cols=266 Identities=15% Similarity=0.122 Sum_probs=191.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc-c
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-G 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~ 181 (389)
...++.+.+.+.++++.++..|+.++..+...+++. +.+.+.++.|.++|.+.++.++..|+.+|..++.+.+.. .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 356677889999999999999999999999866543 233577899999999999999999999999998765422 1
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC---
Q 016464 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--- 258 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~--- 258 (389)
.-...+.+..|+..+.+.++..+...+.++..+...++.. ....++.+..++++.+..++..|++++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1122355778888888889989888999998887543321 135678888888889999999999999998742
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhh-------------------HH------HhhccC--
Q 016464 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEG-------------------KT------AIGQAE-- 310 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~-------------------~~------~i~~~~-- 310 (389)
+......+-..+.+.|+.++ +++++++..|+..|..+... +.. +. .+.+..
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 22222223345567777665 47888999999998888741 110 00 112222
Q ss_pred --ChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 311 --PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 --~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.++.|..++.+.+.+++..+++.|..++...+... ...++.|+.++.+....++..+...++.+.+
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 34455566667788999999999999998765332 2367778888888777777777777776643
No 89
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.36 E-value=1.5e-11 Score=118.77 Aligned_cols=228 Identities=16% Similarity=0.170 Sum_probs=165.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
...++.+.+++.++++.++..|+..|..++...+.. ......++.+..++.+++..+|..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 356677777888889999999999999998643321 223467899999999999999999999998887532211
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc-
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN- 261 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~- 261 (389)
.....+++.+..++++++..++..++.+|..++...+. .......++.+..+++++++.++..++.+|..++..-..
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 12234788888999999999999999999998753211 122356789999999999999999999999998864332
Q ss_pred -hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016464 262 -KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 262 -~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
+.......+++.+..++.+.+..++..++.+|..++..-.... .....++.+..++.+.++.+|..++.+|..+..
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 2223345677888888888888888888888887764221111 112356777777777777777777777666654
No 90
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.36 E-value=2.3e-11 Score=117.48 Aligned_cols=266 Identities=15% Similarity=0.115 Sum_probs=192.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
...++.|..++.++++.++..|+..|..++...+.. ......++.+..+..+++...|..|+.++..++..-.. .
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~ 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H
Confidence 456777777777889999999999999998755432 12334577777887888889999999999888754321 1
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 262 (389)
....+++.+..+++++++.++..|+.+|..++..-... ......++.+..++.+++..++..|+.+|..++..-+.
T Consensus 161 -~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 161 -VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp -HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-
Confidence 12346788888889999999999999999987543221 22357888999999999999999999999988764322
Q ss_pred HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016464 263 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
......+++.+..++.+.+..++..++.+|..++...... ......++.+..++.+.++.+|..|+.+|..++..-+
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 1233457888888888888899999999999998532211 1223468899999999999999999999999887431
Q ss_pred -HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 343 -EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 343 -~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
+.........+++.+..++.+.++.+|..+.++|..+.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111122345666666666767777777766666554
No 91
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=90.53 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
....+.+.|+||++.+.+|+.++|||+||+.||.+|+.. ...||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 345677999999999999999999999999999999986 4789999988753
No 92
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=87.81 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=46.5
Q ss_pred CCCCCCCCCcCcCCcccCcCC-------eecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 4 RSPVIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~p-------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
....+.+.+.||||++.+.+| +.++|||+||..||.+|+.. ...||.|+.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 345578889999999999988 88999999999999999986 568999998875
No 93
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.28 E-value=3.2e-11 Score=116.48 Aligned_cols=259 Identities=16% Similarity=0.123 Sum_probs=189.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
+.+.+++++.+++..++..+...+..++..+++.. .-+++.+.+-|.++++.+|..|+.+|+++... + +.
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~----~~ 119 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K----IT 119 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G----GH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H----HH
Confidence 46778889999999999999888888887554432 23567888889999999999999999998621 1 21
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch-H
Q 016464 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-A 263 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~ 263 (389)
...++.+.++|.++++.++..|+.++.++....+. .+...++++.+..+|.+.++.++..|+.+|..++...... .
T Consensus 120 -~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 -EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp -HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred -HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 23567899999999999999999999999754322 1222478899999999999999999999999998765422 0
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc---
Q 016464 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG--- 340 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~--- 340 (389)
.-...+.+..|+..+.+.++..+...+.+|..++..++.. ....++.+..++++.++.++..|++++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1111234667777777788888888888888777433211 123566777778888899999999999998742
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 341 DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+++..+.+. ..+.+.|+.++ ++++.+|..|...|..+...
T Consensus 273 ~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 273 DSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp TTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 333333322 23456666554 47888999999888888654
No 94
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=4.7e-12 Score=87.13 Aligned_cols=59 Identities=22% Similarity=0.504 Sum_probs=48.3
Q ss_pred CCCCCCCCcCcCCcccCcCCe---ecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCcc
Q 016464 5 SPVIPDDFRCPISLELMKDPV---IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 64 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv---~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n 64 (389)
.....+.+.|+||++.+.+|. .++|||.||+.||.+|+.. ...||.||..+......++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345677899999999998763 4699999999999999985 4689999999876655443
No 95
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25 E-value=1.5e-12 Score=86.08 Aligned_cols=53 Identities=23% Similarity=0.543 Sum_probs=46.0
Q ss_pred CCCcCcCCcccCcCC-------eecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016464 10 DDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p-------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
+++.||||++.+.+| +.++|||+||+.||.+|+.. ...||.|+.++...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence 578999999999987 78999999999999999986 568999999987665443
No 96
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.22 E-value=2.4e-10 Score=111.99 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=152.8
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHH-HHhccCChhhHHHHHHHHHHhccCC--CchHH
Q 016464 188 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALI-RLLCDGTPRGKKDAATAIFNLSIYQ--GNKAR 264 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~~ 264 (389)
.+.++++.|++++++.|..|+++|.+|+.++..+..+...+++..++ .+|.+.+.+++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45667888999999999999999999999888888888888887765 5688889999999999999999764 45678
Q ss_pred HHhcCCcHHHHHHHhhcC---------------------cccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcC
Q 016464 265 AVRAGIVPPLMRFLKDAG---------------------GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
+++.|++++|..++.... .++.+.++.+|++|+. .......+...+.++.|+.++.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 899999999999986411 1234567889999985 455566777888999999998553
Q ss_pred ---ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHH---HHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 323 ---SPRNRENAAAVLWAICTGDAEQLKIARELDAEE---ALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 323 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~---~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
..+++..|+.+|..++.+++...+.+.+.+... .+..+. ..+...+..++.+|.++..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence 367899999999999999998888888876433 333333 3444557788899998854
No 97
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=6.3e-12 Score=79.98 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=41.3
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
.+++.|+||++.+.+|++++|||+||+.||.+| ...||.|+..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 578999999999999999999999999999873 56799999887543
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.18 E-value=1.3e-11 Score=78.62 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=41.6
Q ss_pred CCCCcCcCCcccCcC----CeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~----pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.++..||||++.+.+ ++.++|||.||..||.+|+..+ ..||.|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 357899999999866 6779999999999999999874 78999998763
No 99
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.18 E-value=1.3e-09 Score=110.33 Aligned_cols=273 Identities=15% Similarity=0.093 Sum_probs=190.8
Q ss_pred hHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhChhhhHHHHh--cCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccc
Q 016464 104 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAE--AGAIPLLVELLSST--DPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 104 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~ 177 (389)
+.++.+++.+.++ ++.++..++.+|..++..... +.+.. ...++.+.+.+.++ +..+|..|+.+|.++...-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 899999999999999865321 11111 24667788888776 6889999999999876421
Q ss_pred c-c-cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 178 S-N-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 178 ~-~-~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
. . ........+++.+...+.+++.+++..++.+|..+..... .-.......+++.++..+.+.++.++..++..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 1 1 1111112357777788888889999999999998875432 11222223678888888888888999999999888
Q ss_pred hccCCC---------------------chHHHHhcCCcHHHHHHHhh-------cCcccHHHHHHHHHHHhcChhhHHHh
Q 016464 255 LSIYQG---------------------NKARAVRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 255 L~~~~~---------------------~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~i 306 (389)
++.... ....-.-..+++.++..+.. .+..++..|..+|..++..-. ..+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh
Confidence 875320 00000113346667777752 345788899999998875432 122
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 307 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+. .+++.+...+.+.++.+|..|+.+|..++.+.. +...... ..+++.|+..+.+.++.+|..|.++|..+.+.
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 21 355666677777889999999999999987642 3333222 34788899999999999999999999999876
No 100
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=3.5e-11 Score=80.53 Aligned_cols=53 Identities=19% Similarity=0.490 Sum_probs=43.6
Q ss_pred CCCCCCCcCcCCcccCc---CCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 6 PVIPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~---~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
....+...|+||++.+. .++.++|||.||..||.+|+.. ...||.|+..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34567789999999884 4567999999999999999986 45799999887543
No 101
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.17 E-value=3.1e-10 Score=114.73 Aligned_cols=273 Identities=10% Similarity=0.058 Sum_probs=183.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc--
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-- 180 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-- 180 (389)
..++.+.+.+.+.++..+..|+.+|..++.+.. +...... ..+++.++..+.++++.+|..++++|+.++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345556666778899999999999999986432 2211111 247889999999999999999999999987532110
Q ss_pred -chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch------hhHHHHhhCcHHHHHHHhccCC--hhhHHHHHHH
Q 016464 181 -GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE------NKVAIGAAGAIPALIRLLCDGT--PRGKKDAATA 251 (389)
Q Consensus 181 -~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~------~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~ 251 (389)
... -..+++.++..++++ +.++..++++|.+++..-. .... -...++.|+..+.+.+ ..++..++.+
T Consensus 448 ~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 448 PQQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF--YPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG--HHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH--HHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 111 234678888888775 8999999999998864311 1111 1356778888887543 6889999999
Q ss_pred HHHhccCCCchHHHHhcCCcHHHHHHHhhc---------------CcccHHHHHHHHHHHhcChhhHHHhhccCChHHHH
Q 016464 252 IFNLSIYQGNKARAVRAGIVPPLMRFLKDA---------------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLM 316 (389)
Q Consensus 252 L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~---------------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~ 316 (389)
|..++........-.-..+++.+++.+.+. ...++..++.+|.+++..-...-.-.-...++.++
T Consensus 524 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 603 (861)
T 2bpt_A 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFF 603 (861)
T ss_dssp HHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999887544322111224566677766532 33466788888888874322210001124677788
Q ss_pred HHHhcCCh-HHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 317 EVIRTGSP-RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 317 ~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
..+++.+. .+++.++.++..++........... ..+++.|...+.+.++.++..+..++..+.+.
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 88887766 8899999999888764221111111 23788888888888889999999998887654
No 102
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6.3e-12 Score=84.49 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=46.4
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
...+.+.+.|+||++.+.+ +.++|||+||..||.+|+.. ...||.||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCC
Confidence 3457788999999999999 88999999999999999984 67899999887644
No 103
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=1.6e-11 Score=82.02 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=42.3
Q ss_pred CCCCcCcCCcccCcCC-eecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.....||||++.+.+| +.++|||+||..|+.+|+.. ...||.|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 4567899999999997 67899999999999999986 468999998875
No 104
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.17 E-value=2e-09 Score=104.34 Aligned_cols=251 Identities=14% Similarity=0.093 Sum_probs=184.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc-cch
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN-KGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 182 (389)
..++.+.+.|.+.++.++..|+.++.++...+++... +.++.+.++|.+.++.++..|+.+|..++...+. ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 4478888888899999999999999999987765432 5778888888888999999999999998865422 112
Q ss_pred hcccCChHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc------cCC
Q 016464 183 IVNAGAIPDIVDVLKN---------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC------DGT 241 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~------~~~ 241 (389)
+ ...++.++++|.+ .++-.+...+.+|..++..++.. ....++.|..++. +.+
T Consensus 217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 2 2567888887763 37888888999999998765321 1234455555543 224
Q ss_pred hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc
Q 016464 242 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT 321 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~ 321 (389)
..+...+++++..+...+ .+. ..++..|..++.+.+++++..|+..|..++...+. ++. .....++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH-HHHHHHHHHccC
Confidence 577888899988875432 122 24567888889889999999999999999864321 222 255678888888
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 322 GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 322 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+..+|..|+.+|..++.... ... ++..|...+.+.+.++|..+...|..++.
T Consensus 362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 889999999999999987542 111 45677778888888999999988888875
No 105
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.17 E-value=1.7e-11 Score=119.13 Aligned_cols=75 Identities=31% Similarity=0.431 Sum_probs=69.2
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCc-cCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016464 6 PVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~-h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
..+|++|.|||++++|+|||+++.| +||.|.+|++|+.. +.+||.+++++....+.||+.++..|++|+..+..+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999997 69999999999986 568999999999999999999999999999887653
No 106
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4e-11 Score=81.51 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=44.8
Q ss_pred CCCCCCCCcCcCCcccCcCCeec---CCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 5 SPVIPDDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~---~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
...+.++..|+||++.+.+|..+ +|||.||..||.+|+.. ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 34567789999999999887654 99999999999999986 4579999988754
No 107
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.16 E-value=2.4e-11 Score=86.00 Aligned_cols=51 Identities=18% Similarity=0.489 Sum_probs=43.7
Q ss_pred CCCCCCcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 7 VIPDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
...++..|+||++.+.+ ++.++|||.||..||.+|+.. ..+||.|+..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 35677899999999877 777999999999999999985 5689999987753
No 108
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.15 E-value=1.7e-09 Score=104.90 Aligned_cols=254 Identities=12% Similarity=0.103 Sum_probs=186.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
-.+..+.+.|+++++.++..|+++|.++.. ++. . ...++.+.++|.+.++.+|..|+.++.++....+ + +
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~-~ 176 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--E-L 176 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--G-G
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--H-H
Confidence 356777888888999999999999999873 221 1 2457889999999999999999999999876322 1 2
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc---------------CChhhHHHH
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---------------GTPRGKKDA 248 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a 248 (389)
+ .++++.+..+|.+.++.++..|+.+|..++..++...... ...++.++.+|.+ .++-.+...
T Consensus 177 v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~i 254 (618)
T 1w63_A 177 M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRI 254 (618)
T ss_dssp G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHH
T ss_pred H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHH
Confidence 2 2578888899999999999999999999987653321111 3677878877753 366777888
Q ss_pred HHHHHHhccCCCchHHHHhcCCcHHHHHHHhh------cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC
Q 016464 249 ATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 249 ~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
+.+|..++..+.. .....++.|..++.. .+..+...|+.++..+...+..+. .++..|..++.+.
T Consensus 255 l~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~ 325 (618)
T 1w63_A 255 LRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNN 325 (618)
T ss_dssp HHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCS
T ss_pred HHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCC
Confidence 8999988865432 123345566666542 234577788888887755432222 3577888899999
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 323 SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 323 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
++.+|..|+.+|..++...+... . .....++..+.+++..+|..|.++|..|....
T Consensus 326 d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 326 DKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred CCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 99999999999999988655432 2 25667888889999999999999999987654
No 109
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.15 E-value=2.1e-11 Score=77.56 Aligned_cols=48 Identities=27% Similarity=0.747 Sum_probs=42.2
Q ss_pred CCCCCcCcCCcccCcC---CeecC-CccCccHHHHHHHHhcCCCCCCCCCccC
Q 016464 8 IPDDFRCPISLELMKD---PVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~---pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. ..+||.||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 4678899999999987 77787 9999999999999985 56899999875
No 110
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=82.37 Aligned_cols=50 Identities=18% Similarity=0.498 Sum_probs=43.2
Q ss_pred CCCCCcCcCCcccCcCC---eecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 8 IPDDFRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~p---v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
..+...|+||++.+.++ +.++|||.||..||.+|+.. ...||.||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999999887 66899999999999999986 4689999988754
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.11 E-value=3.2e-10 Score=111.06 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHH-HHHccCCHHHHHHHHHHHHHhcCC--chhhHHH
Q 016464 148 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV-DVLKNGSMEARENAAATLFSLSVI--DENKVAI 224 (389)
Q Consensus 148 v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~-~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~~ 224 (389)
+.++++.|++++++.|..|+++|.+|+.++..+..+...|++..++ .+|.+++.+++..|+++|.||+.. .+.+..+
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 4446677999999999999999999999888888888888887755 578889999999999999999865 4677889
Q ss_pred HhhCcHHHHHHHhccC--------------C-------hhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhhcC
Q 016464 225 GAAGAIPALIRLLCDG--------------T-------PRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAG 282 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~~--------------~-------~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~ 282 (389)
++.|+++.|..+++.. . ..+...++.+|.+|+.... ....+...++++.|+..|.+.+
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 9999999999998531 0 1234467788899987554 4456777899999999986633
Q ss_pred ---cccHHHHHHHHHHHhcC-hhhHHHhhccCCh--HHHHHHHhcCChHHHHHHHHHHHHHh
Q 016464 283 ---GGMVDEALAILAILASH-QEGKTAIGQAEPI--PVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 283 ---~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v--~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
.+++..|+.+|..++.. +.....+.+.+.. -.++-.+...+...+..++++|.|+.
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 46889999999999975 4445566665432 22322334445556778899999974
No 112
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.08 E-value=3.2e-09 Score=107.28 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=188.2
Q ss_pred hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhH--HHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccc
Q 016464 103 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRV--CIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 103 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~ 177 (389)
.+.++.|++.+.++ ++.++..++.++..++........ .-....+++.+...+.++ +.++|..|+.+|..+...-
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999988 999999999999999874321100 001123567777888776 7899999999998864311
Q ss_pred c-c-cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-hHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 178 S-N-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 178 ~-~-~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
. . .........++.|...+.+++++++..++.+|..+....+. -........++.+...+.+.+..++..++.++..
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0 0 00000123567777788888999999999999988754321 1111212667777788888889999999999988
Q ss_pred hccCCCc-----------------hHHHHhcCCcHHHHHHHhhc-------CcccHHHHHHHHHHHhcChhhHHHhhccC
Q 016464 255 LSIYQGN-----------------KARAVRAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIGQAE 310 (389)
Q Consensus 255 L~~~~~~-----------------~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 310 (389)
++..... ...-.-..+++.++..+... +..++..+..+|..++..-. ..++ ..
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~ 369 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HH
Confidence 8764211 00001134677777777642 23578888999988886432 1111 12
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.++.+.+.+.+.+...|+.|+.++..++.+. ++....... .+++.|+..+.+.++.+|..+.++|..+...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 4566666677778999999999999999764 233333332 4778888888888999999999999998865
No 113
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=3e-11 Score=92.71 Aligned_cols=53 Identities=21% Similarity=0.493 Sum_probs=46.2
Q ss_pred CCCCCcCcCCcccCcCC-------eecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016464 8 IPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~p-------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
.++++.||||++.+.+| +.++|||+||..||.+|+.. ...||.|+..+....+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 35789999999999999 88999999999999999985 4589999998875544
No 114
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.06 E-value=3.5e-09 Score=107.23 Aligned_cols=275 Identities=15% Similarity=0.102 Sum_probs=185.9
Q ss_pred hhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhChhhh-HHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc-
Q 016464 103 RAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS- 178 (389)
Q Consensus 103 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~- 178 (389)
...++.+.+.+.++ +.+++..|+++|..+...-..+- .......+++.+...+.+.+.++|..++.+|..++....
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34566677777776 68899999999998875322211 111112357777888888889999999999999876332
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-------------------hHHH--HhhCcHHHHHHHh
Q 016464 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-------------------KVAI--GAAGAIPALIRLL 237 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-------------------~~~~--~~~~~i~~L~~ll 237 (389)
.-.......+++.++..+.+.++.++..++.++..++..... .... .-...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 111222336788888888888899999999988888643210 0000 0124566677777
Q ss_pred cc-------CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh--hHHHhhc
Q 016464 238 CD-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE--GKTAIGQ 308 (389)
Q Consensus 238 ~~-------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~ 308 (389)
.. ++..++..++.+|..++..-.. .++ ..+++.+...+.+.+..+++.|+.+|+.++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888899999888754321 111 2355666667777888899999999999996532 122222
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHH--HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016464 309 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL--KIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 309 ~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
...++.++..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. +.++..+.++|..+.+..
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 3478889999998899999999999999987543210 000 113566777777764 889999999999998653
No 115
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.04 E-value=1.5e-10 Score=86.01 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCCcCcCCcccCcCCe------------------ecCCccCccHHHHHHHHhc----CCCCCCCCCccCcC
Q 016464 9 PDDFRCPISLELMKDPV------------------IVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLH 58 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv------------------~~~c~h~~c~~ci~~~~~~----~~~~cp~c~~~~~~ 58 (389)
+.+..||||++.|.+|+ .++|||.||+.||.+|+.. ....||.||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34579999999998775 6889999999999999963 35689999988753
No 116
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.04 E-value=1.6e-08 Score=81.71 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=151.5
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc-c
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN-K 180 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~ 180 (389)
+.+.+..|..+|...|+.++.+++.+|..+.+..+.......-...++.++.++.+.+..+.-.|+.+|..|..+.+. .
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 356899999999999999999999999999987555544444456899999999999999999999999998765433 3
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016464 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
..+.. .+.+|..++.++++-...+++..++.+...... .+++..+..++.+.+.+++..++.++.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 33332 567889999999999999999999999433322 2456788889989999999999999999987554
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
+.. .-.+++.-+-++|.+.++.+++.|+.++..+.+.+-
T Consensus 183 D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 183 DSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp SCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred CHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence 321 123455667888999999999999999999998753
No 117
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=3.8e-11 Score=81.23 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=40.2
Q ss_pred CCCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
.+++.|+||++.+.+|++++|||. ||+.|+..| ..||.||.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 345899999999999999999999 999999988 679999988753
No 118
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.98 E-value=7.6e-09 Score=96.67 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=161.6
Q ss_pred hhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhChhhh-HHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016464 103 RAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 103 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
...++.++..|.+. +..++..|++++..+...-.+.. ......-+++.+.+.+.+.+.++|..++.+|..++.....
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888887 78999999999998653211110 0011111466777777888999999999999998764321
Q ss_pred c-chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH------------------HHH---hhCcHHHHHHHh
Q 016464 180 K-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV------------------AIG---AAGAIPALIRLL 237 (389)
Q Consensus 180 ~-~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~------------------~~~---~~~~i~~L~~ll 237 (389)
. ......++++.++..+++.+++++..++.++..++....... .+. -...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 1 111222678888888888899999999999888864321000 011 124556666666
Q ss_pred ccC-------ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh--HHHhhc
Q 016464 238 CDG-------TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQ 308 (389)
Q Consensus 238 ~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~ 308 (389)
.+. +..++..|+.+|..++..-+. .+. ..+++.+...+.+.+..+++.|+.+|+.++..... -....
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l- 406 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-
Confidence 432 346888999999998764431 222 34567777788888889999999999999964321 11111
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 309 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 309 ~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
...++.++..+.+.++.+|..|+++|.+++..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999874
No 119
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.97 E-value=5.7e-10 Score=117.06 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=188.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
..++.+++.+.++|.++|..|...|.+...........-....+++.+++.|.+.++.+|..|+.+|..++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 4578888999999999999999999886543211000011124678899999988999999999999998753221 11
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh------HHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhc
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------VAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~ 256 (389)
. ..+++.|+..|.++++.+|..++.+|..++..-... ..-.....++.|+..+. +++..++..|+.+|..++
T Consensus 84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1 236778888888888889999999998886432111 11123467889999998 478899999999999988
Q ss_pred cCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC-hHHHHHHHHHHH
Q 016464 257 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLW 335 (389)
Q Consensus 257 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~-~~~~~~a~~~L~ 335 (389)
...+....-.-..+++.++..+.+++..++..|+.+|..++...... +. ...++.+++.+...+ ...+..++.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 53221100011345566777777778899999999999998654322 12 235788888887653 467778888888
Q ss_pred HHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 336 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.++...+..... .-..+++.++..+.+.++.+|+.+.+++..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 887643221111 1135788888888888999999999999988663
No 120
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.96 E-value=1.3e-07 Score=91.49 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=162.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHh--cCCChHHHHHHHHHHHhccccccccch
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL--SSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.+..+.+-|+++++.++-.|+++|.++.. ++..+ ..++.+.++| .+.++.+|..|+.++..+....+ +.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hh
Confidence 45667777888999999999999999863 33222 3568888999 88899999999999999876322 22
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHH----HHhccC-------------ChhhH
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALI----RLLCDG-------------TPRGK 245 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~----~ll~~~-------------~~~~~ 245 (389)
+-..+.++.+.++|.+.++.++..|+.++..++..++.. + ...++.++ +++..+ ++-.+
T Consensus 183 ~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 183 VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 223588999999999999999999999999987644321 1 12334444 333221 34566
Q ss_pred HHHHHHHHHhccCCC--chHHHHhcCCcHHHHHHHh---------hc--CcccHHHHHHHHHHHhcChhhHHHhhccCCh
Q 016464 246 KDAATAIFNLSIYQG--NKARAVRAGIVPPLMRFLK---------DA--GGGMVDEALAILAILASHQEGKTAIGQAEPI 312 (389)
Q Consensus 246 ~~a~~~L~~L~~~~~--~~~~~~~~~~i~~L~~ll~---------~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v 312 (389)
...+..|..++..++ ....+.+ .+..++..+. +. ...+...++.++..+...++... .++
T Consensus 259 i~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~ 331 (621)
T 2vgl_A 259 VKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RAC 331 (621)
T ss_dssp HHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHH
Confidence 667777777765322 1222222 2233332221 11 12556666677766654333222 245
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhhHh
Q 016464 313 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 313 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
..|..++.+.++.+|..|+..|..++...+. .. ++. .....++..+. ++|..+|..+..+|..|....+
T Consensus 332 ~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 332 NQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 6677777777778888888888887765431 01 111 24555666666 6777777777777777765443
No 121
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=3.4e-10 Score=100.04 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=44.4
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
....|+||.+.+.+|+.++|||.||..|+..|+......||.||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34799999999999999999999999999999985567899999987643
No 122
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=75.40 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=39.8
Q ss_pred CCCcCcCCcccCcC--------------Ceec-CCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 10 DDFRCPISLELMKD--------------PVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 10 ~~~~Cpic~~~~~~--------------pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
++-.|+||++.+.+ ++.+ +|||.|++.||.+|+.. ..+||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 46779999999977 4455 59999999999999986 4689999988753
No 123
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=6.3e-09 Score=84.04 Aligned_cols=222 Identities=12% Similarity=0.051 Sum_probs=161.1
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccc--cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhH
Q 016464 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSIND--SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKV 222 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~ 222 (389)
+.+..|..+|...|+.++.+++.+|..+.... ..+.... ...++.++.++++.++.+...|+++|..|..+.+ ...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35788999999999999999999999987753 2333333 3579999999999999999999999999976643 222
Q ss_pred HHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh
Q 016464 223 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 302 (389)
Q Consensus 223 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 302 (389)
.+ ......|.++++++++-.+.+++..+..+--... ..+++..+.+++.+.+.+++..++.++.+++.....
T Consensus 112 ~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 22 2355788888899999999999999998822211 123456788888889999999999999999975433
Q ss_pred HHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH--HHHHHHHhcCcHHHHHHHH-HhCChHHHHHHHHHHHHH
Q 016464 303 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA--EQLKIARELDAEEALKELS-ESGTDRAKRKAGSILELL 379 (389)
Q Consensus 303 ~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~a~~~L~~l 379 (389)
...+ .+.+..+-.++++.++.+++.|..+|..+....- +....+. ++....-.+. ..+.|.++.+|..+-..+
T Consensus 184 ~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 184 SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 2222 1366778889999999999999999999887541 0110000 1222222233 457889999998876665
Q ss_pred H
Q 016464 380 Q 380 (389)
Q Consensus 380 ~ 380 (389)
-
T Consensus 260 e 260 (265)
T 3b2a_A 260 D 260 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.86 E-value=2.1e-07 Score=89.94 Aligned_cols=255 Identities=13% Similarity=0.110 Sum_probs=177.1
Q ss_pred hHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016464 104 AAIDALLGKL--ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 104 ~~i~~l~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
..++.+.+.| .+.++.++..|+.++.++...+++.. ...+.++.+.++|.+.++.++..|+.+|..++...+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4667777888 78899999999999999998766533 2248999999999988999999999999998764421
Q ss_pred hhcccCChHHHH----HHHccC-------------CHHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhc----
Q 016464 182 TIVNAGAIPDIV----DVLKNG-------------SMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLC---- 238 (389)
Q Consensus 182 ~i~~~g~l~~L~----~lL~~~-------------~~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~---- 238 (389)
.+ ...++.++ +++..+ ++-.+...+..|..+...+ +....+. +.+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 12344444 444322 5778888888888887542 2222222 23444443321
Q ss_pred -----cCC--hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCC
Q 016464 239 -----DGT--PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP 311 (389)
Q Consensus 239 -----~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 311 (389)
+.+ ..+..+++.++..+...++ +. ..++..|..++.+++++++..|+..|..++........+ . ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPN----LL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHH----HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HH
Confidence 112 2677788888888753221 11 134667888888888999999999999998654322222 2 35
Q ss_pred hHHHHHHHh-cCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 312 IPVLMEVIR-TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 312 v~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
...++..+. +.+..++..++.+|..++.. .+... ++..|...+.+.+.+.+..+...+..++.
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 677888888 88899999999999998853 33332 56667778888888888888888877764
No 125
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=74.32 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=38.5
Q ss_pred CCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
+.+.|+||++.+.+|++++|||. ||..|+.+ ...||.||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 45789999999999999999999 99999964 3679999998754
No 126
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=4.4e-10 Score=86.15 Aligned_cols=54 Identities=22% Similarity=0.556 Sum_probs=46.7
Q ss_pred CCCCcCcCCcccCcCC-------eecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016464 9 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p-------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
++.+.|+||++.+.+| +.++|||+||..||.+|+.. ..+||.|+.++...++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhccee
Confidence 5678999999999887 78899999999999999986 568999999987665544
No 127
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.84 E-value=1.1e-08 Score=107.50 Aligned_cols=232 Identities=12% Similarity=0.085 Sum_probs=164.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc-
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK- 180 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~- 180 (389)
....++.+++.|.+.++++|..|+.+|..++...++. . -..+++.|+..+.++++.+|..|+.+|..++..-...
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3567889999999999999999999999998644331 1 1236788888888888899999999999887532211
Q ss_pred -----chhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 181 -----GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 181 -----~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
..-.-...++.|+..+. +++..++..|+.++..++......-.-.....++.++..+.+.+..++..|+.+|..
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 00112457889999998 578999999999999987321100000113466778888888889999999999999
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHhhcC-cccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHH
Q 016464 255 LSIYQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 333 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~ 333 (389)
++...+.. + -...++.++..|.+.+ ..++..++.++..++......-.-.-...++.++..+.+.++.+|..++.+
T Consensus 202 l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 202 LVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred HHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 98754322 1 2345788888887643 467778888888887532221111114578888998988889999999999
Q ss_pred HHHHhhc
Q 016464 334 LWAICTG 340 (389)
Q Consensus 334 L~~l~~~ 340 (389)
+..++..
T Consensus 279 l~~l~~~ 285 (1230)
T 1u6g_C 279 FESFVRR 285 (1230)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888774
No 128
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.4e-08 Score=86.34 Aligned_cols=182 Identities=11% Similarity=0.107 Sum_probs=138.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccccccccchhc--
Q 016464 108 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIV-- 184 (389)
Q Consensus 108 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~-- 184 (389)
.+.+.+.+.++..|..|+..|..+..+.+.....- -..+++.|...+. +.+..++..|+.+|..|+..-. ..+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 47788889999999999999999987633211000 0135778888885 8899999999999999985321 1111
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC-Cc--
Q 016464 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GN-- 261 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~-~~-- 261 (389)
-..+++.|+..+.+.+..++..+..+|..+...... ...++.+...+.+.++.++..++..|..+.... ..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 134789999999999999999999999998764332 235678888899999999999999999965432 21
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016464 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
..... ..+++.|+.++.+.+.+++..|..++..++..
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12222 36889999999999999999999999998853
No 129
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.82 E-value=1.6e-07 Score=85.11 Aligned_cols=230 Identities=11% Similarity=0.096 Sum_probs=161.3
Q ss_pred HHHHhcC-CChHHHHHHHHHHHhccccccccchhcccC--ChHHHHHHHcc---------------C--CHHHHHHHHHH
Q 016464 151 LVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKN---------------G--SMEARENAAAT 210 (389)
Q Consensus 151 L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~l~~L~~lL~~---------------~--~~~~~~~a~~~ 210 (389)
++..|.+ .+...+..++.+|..|...+++|..+.+.+ .++.++.+++. + +..+++.++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 4455555 244556788999999999999999887533 46666654431 1 35678999999
Q ss_pred HHHhcCCchhhHHHHhhCcH--HHHHHHhcc-CChhhHHHHHHHHHHhccCCC-ch----H-HHHhcCCcHHHHHHHhh-
Q 016464 211 LFSLSVIDENKVAIGAAGAI--PALIRLLCD-GTPRGKKDAATAIFNLSIYQG-NK----A-RAVRAGIVPPLMRFLKD- 280 (389)
Q Consensus 211 L~~Ls~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~-~~----~-~~~~~~~i~~L~~ll~~- 280 (389)
+|-|+..++....+...+.. ..|+..++. ..+++.+-++.+|.|+..... .. . .++..++ ..+++.|..
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~r 330 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSER 330 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSS
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhC
Confidence 99999998887777766643 566677765 458888999999999987652 11 2 2233444 456666654
Q ss_pred --cCcccHHHHHHHHHHHh-------c---------------ChhhHH---------Hhhcc--CChHHHHHHHhc----
Q 016464 281 --AGGGMVDEALAILAILA-------S---------------HQEGKT---------AIGQA--EPIPVLMEVIRT---- 321 (389)
Q Consensus 281 --~~~~~~~~a~~~L~~l~-------~---------------~~~~~~---------~i~~~--~~v~~L~~ll~~---- 321 (389)
.++++.+..-.+...|. + +|.++. .+.+. ..++.|+++|.+
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~ 410 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 410 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence 56665544332222222 1 222222 22222 357899999974
Q ss_pred ------CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 322 ------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 322 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.++.+..-|+.=|+.++..-|..+..+-+.|+-..+++++.++|++||..|..+++.+-.
T Consensus 411 ~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 411 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 357778889999999999988888899999999999999999999999999999988754
No 130
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.8e-09 Score=70.50 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=42.4
Q ss_pred CCCCcCcCCcccCcCCeec--CCccC-ccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~--~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
+++..|+||++...+++++ +|||. ||..|+.+|+.. ...||.||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999987 99999 899999999975 567999998874
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.78 E-value=2.1e-08 Score=85.19 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=137.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHh
Q 016464 190 PDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVR 267 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 267 (389)
+.+.+.+.+.+...|..|+..|..+... +..... .-..+++.|...+. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4588889999999999999999988654 221100 01245777888884 88999999999999999854322211222
Q ss_pred cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc-CHHH-H
Q 016464 268 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG-DAEQ-L 345 (389)
Q Consensus 268 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~-~ 345 (389)
..+++.++..+.+.+..+++.|..+|..+...... ...++.+...+++.++.+|..++..|..+... +++. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 45788999999998999999999999999865321 12567788888888999999999999996443 3321 1
Q ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 346 KIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 346 ~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.... ..+++.|..++.+.++++|..|..++..+...
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1122 25889999999999999999999999988643
No 132
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.3e-09 Score=77.63 Aligned_cols=47 Identities=13% Similarity=0.384 Sum_probs=39.6
Q ss_pred CCCCcCcCCcccCcCCeec---CCccCccHHHHHHHHhc----C---CCCCCC--CCcc
Q 016464 9 PDDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDA----G---HKTCPK--TQQT 55 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~---~c~h~~c~~ci~~~~~~----~---~~~cp~--c~~~ 55 (389)
.+.++||||.+.+.+|+++ +|||.||+.|+.+|+.. + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999999998764 69999999999999973 2 247999 9887
No 133
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=3.2e-09 Score=69.01 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=41.9
Q ss_pred CCCCcCcCCcccCcCCeec--CCccC-ccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~--~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.....|+||++...+++++ ||||. ||..|+.+|+.. ...||.||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 3457899999999999887 99998 999999999875 467999999874
No 134
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.74 E-value=7.1e-09 Score=74.74 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=39.6
Q ss_pred CCCcCcCCcccCcCC------------------eecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDP------------------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p------------------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
++-.|+||++.|.++ +.++|||.|+..||.+|+.. ..+||.||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 346799999999876 23789999999999999986 678999998753
No 135
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.69 E-value=1.9e-09 Score=82.22 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=91.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
...++.++..|+++++.++..|++.|..+.. ..++.|+++|+++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3467888999999888899988888876532 136899999999999999999999988752
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
...++.|+..|+++++.++..|+++|.++.. ...++.|+.++++++..++..|+.+|.++
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468999999999999999999999998852 34678899999888899999999888653
No 136
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.67 E-value=5.1e-09 Score=71.44 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.5
Q ss_pred CCCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
.++..|+||++.+.+|+++||||. ||..|+..| ..||.||.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 445789999999999999999999 999999876 379999988753
No 137
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2.9e-08 Score=65.40 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=39.9
Q ss_pred CCCCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
-.+...|+||++...+++++||||. ||..|+.. ...||.||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 3679999998753
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.64 E-value=5.5e-09 Score=79.70 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=93.0
Q ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHH
Q 016464 145 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 224 (389)
Q Consensus 145 ~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~ 224 (389)
...++.+..+|+++++.+|..|+++|..+.. ..++.|+++|+++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3578889999999999999999988876642 136999999999999999999999998853
Q ss_pred HhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHH
Q 016464 225 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 295 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 295 (389)
...++.|+.++.++++.++..++++|.++. +...++.|..++.+.++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235789999999999999999999999885 23457889999988889999999888764
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.5e-07 Score=79.95 Aligned_cols=189 Identities=8% Similarity=0.094 Sum_probs=136.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-HHhhChhhhHHHHh-cCCHHHHHHHh-cCCChHHHHHHHHHHHhcccccc--ccc-h
Q 016464 109 LLGKLANGNVEEQRAAAGELRL-LAKRNADNRVCIAE-AGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDS--NKG-T 182 (389)
Q Consensus 109 l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~g~v~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~--~~~-~ 182 (389)
+-+.+.+.++..|..|+..|.. +..+.++....-.+ ...+..|.+.+ ++.+..++..|+.+|..|+..-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 87654332100001 13577888888 67899999999999999984221 111 1
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
.. .-+++.++..+++....++..+..++..+...- +....-.-...++.|+..+.+.++.++..++.+|..+....+.
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11 236889999999988999888888888776432 1100000124667888899988999999999999998865443
Q ss_pred h-HHH--H-hcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016464 262 K-ARA--V-RAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 262 ~-~~~--~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
. ..+ . ...+++.|.+++.+.+.+++..|..+|..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 222 2 26789999999999999999999999998874
No 140
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.61 E-value=1.3e-06 Score=77.34 Aligned_cols=250 Identities=10% Similarity=0.026 Sum_probs=155.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
.....+++.+.+.|.+.+.-..-.+..++...++. + =++..|.+=++++++-+|-.|+++|+++...+ +
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m 136 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-----M 136 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----T
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----H
Confidence 45667788999999999998888888888653221 1 26788889999999999999999999986432 1
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
. ....+.+.+.|.+.++.++..|+-+..+|....+. ++ .+++..+-+++.+.++-++..|+.+|..+...+..
T Consensus 137 ~-~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 137 L-QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 2 12456777888899999999999999999765433 22 37899999999999999999999999999765421
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHH
Q 016464 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
.+..|+.-+......-.-.-+.+|.-+......-..-.....++.|..++++.++.+..+|+.++..+...+..
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 22334444433211011122233332222111100011223556666677778888888888888877553221
Q ss_pred HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 344 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 344 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
. . ..++..|..++.+.++.+|-.|...|..+...
T Consensus 284 ~----~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 284 E----L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred H----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 1 1 23456677778888888888887777666543
No 141
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6.6e-08 Score=65.72 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=43.5
Q ss_pred CCCCCCCCcCcCCcccC--cCCeecCCc-----cCccHHHHHHHHhcC-CCCCCCCCccCcC
Q 016464 5 SPVIPDDFRCPISLELM--KDPVIVSTG-----QTYERSCIQKWLDAG-HKTCPKTQQTLLH 58 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~--~~pv~~~c~-----h~~c~~ci~~~~~~~-~~~cp~c~~~~~~ 58 (389)
+..-.+...|+||++.+ .+++.+||+ |.|.+.||.+|+... ..+||.|+..+..
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 33445667999999876 468888996 999999999999853 4689999988764
No 142
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.59 E-value=4.4e-09 Score=92.67 Aligned_cols=44 Identities=14% Similarity=0.422 Sum_probs=40.1
Q ss_pred CCCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.+++.|+||++.+.+|++++|||. ||+.|+..| ..||.||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 456899999999999999999999 999999987 57999998875
No 143
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.4e-07 Score=77.82 Aligned_cols=190 Identities=9% Similarity=0.084 Sum_probs=136.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcCC-chhhHHHHh-hCcHHHHHHHh-ccCChhhHHHHHHHHHHhccCCC-chHH-
Q 016464 191 DIVDVLKNGSMEARENAAATLFS-LSVI-DENKVAIGA-AGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQG-NKAR- 264 (389)
Q Consensus 191 ~L~~lL~~~~~~~~~~a~~~L~~-Ls~~-~~~~~~~~~-~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~~~~~-~~~~- 264 (389)
.+...+.+.+...|..|+..|.. +... ........+ ...+..|...+ ++.+..++..|+.+|..|+..-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45677889999999999999999 8632 111100011 24567788888 68889999999999999985322 1111
Q ss_pred HHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhh--ccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016464 265 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
-.-..+++.+++.+.+....+++.+..++..++..-.. .... -...++.|+..+++.++.+|+.++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 12233688889999888888999999888888753211 0000 01267788888888899999999999999887543
Q ss_pred ---HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 343 ---EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 343 ---~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
......+...+++.|..++.+.++.+|..|..+|..+.+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222233335789999999999999999999999998764
No 144
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.55 E-value=7.7e-07 Score=78.81 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=132.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
-++..+.+-++++++-++-.|+++|.++... +..+ ...+.+-+.|.+.++.+|..|+-+...|....+. +
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~ 173 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---V 173 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---H
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---H
Confidence 3578888999999999999999999999753 2222 2456777888899999999999998887654322 2
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC---ChhhHHHHHHHHHHhccCCC
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~~ 260 (389)
+ .+++..+-+++.+.++.+...|+.+|..+...+.. .+..++..+... ++-.+...++.+..+...++
T Consensus 174 v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 174 V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2 26899999999999999999999999999765421 334455555443 23333333333333333220
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
.-.....++.+..+|++.++.|...|+.++..+...+.. +. ..++..|..++.+.++.+|..|+..|..+...
T Consensus 245 ---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 ---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred ---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 112345667777778888889999999999888653322 11 23566777888889999999999999999887
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Q 016464 341 DAEQLKIARELDAEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
.|...+. .-..+.+++.+++..+...|...|
T Consensus 318 ~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 318 HPSAVTA-----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------
T ss_pred CcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 7655442 344567788888877777766544
No 145
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.46 E-value=2.7e-05 Score=60.50 Aligned_cols=217 Identities=15% Similarity=0.157 Sum_probs=154.5
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccc
Q 016464 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~ 179 (389)
.+..++..++++|..+-+-++.+|+..+..++...++..+-++ ..|+.+++.+ ...+-.....+++.++...
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~-- 101 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-- 101 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence 3567899999999988899999999999999988877665543 5677776553 4455456667887776422
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016464 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
-.++. +.+|.+..-..-+++.++.....+|..+....+.- -.+++..+..++.+.+..-+..|+..+..+.
T Consensus 102 -Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alG--- 172 (253)
T 2db0_A 102 -PELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMG--- 172 (253)
T ss_dssp -HHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---
T ss_pred -HHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHh---
Confidence 12221 34666666667789999999999999886543321 1356788888998888666666666666553
Q ss_pred CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh-hhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016464 260 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 260 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
++....+ ...+|.|..+|.+.+.-++..|+.+|.+++... ..|.. +...+.-+.+.+..++......|..+.
T Consensus 173 en~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 173 ENSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp TTTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3443333 347899999999999999999999999999654 33333 334445556677888888887887766
Q ss_pred hc
Q 016464 339 TG 340 (389)
Q Consensus 339 ~~ 340 (389)
.-
T Consensus 246 l~ 247 (253)
T 2db0_A 246 LL 247 (253)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 146
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.42 E-value=3.3e-08 Score=72.19 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=0.4
Q ss_pred CCcCcCCcccCcCC-----------------ee-cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 11 DFRCPISLELMKDP-----------------VI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~p-----------------v~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
+-.|+||++.|.+| +. ++|+|.|+..||.+|+.. ..+||.||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 35899999998774 22 589999999999999986 568999998753
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.41 E-value=8.2e-06 Score=70.39 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=139.7
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHH-hcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHh
Q 016464 189 IPDIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR 267 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 267 (389)
+..+++.|.+++.+.+..++.-|.. ++.+.+....++..+++..|+....+.+...+..++.+|.+|.....+...++.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 3456677777888888888888888 666778889999999999999999999999999999999999988777766664
Q ss_pred -cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh-hHHHhhc--------c--CChHHHHHHHh---cCChHHHHHHHH
Q 016464 268 -AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQ--------A--EPIPVLMEVIR---TGSPRNRENAAA 332 (389)
Q Consensus 268 -~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~--------~--~~v~~L~~ll~---~~~~~~~~~a~~ 332 (389)
...|..+..++.+....+...|+.+|..++.+.+ +...+.+ . .-+..|+.+|+ +.+.+++.+|+.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4678888888888788899999999999986544 3222211 1 24789999998 668899999988
Q ss_pred HHHHHhhcC--H----HHHHHHHhcCcHHHHHHHHHhC--ChHHHHH
Q 016464 333 VLWAICTGD--A----EQLKIARELDAEEALKELSESG--TDRAKRK 371 (389)
Q Consensus 333 ~L~~l~~~~--~----~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~ 371 (389)
.|-.+...- . +....+.+.|+-..+...+... ++++++.
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 877665432 2 2334455567667777777765 6676664
No 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.40 E-value=5.6e-05 Score=74.73 Aligned_cols=234 Identities=17% Similarity=0.153 Sum_probs=158.8
Q ss_pred HHHHHHHhhcCCC--------HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc
Q 016464 105 AIDALLGKLANGN--------VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 176 (389)
Q Consensus 105 ~i~~l~~~l~~~~--------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~ 176 (389)
.+..|...|.+++ +.++..|+..|+....++.. ..+++.|..+|.+++...++.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4566666666544 45666677777765543321 12567888888887777777888888765221
Q ss_pred ccccchhcccCChHHHHHHH-ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHH
Q 016464 177 DSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFN 254 (389)
Q Consensus 177 ~~~~~~i~~~g~l~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~ 254 (389)
.. +..++..|+..+ .+.+..++..++..|+.+.... ...++.+++.|. +.++.+|..++.+++-
T Consensus 503 Tg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TG------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 123456666655 3557888988999998775332 345677777776 4577778777777764
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHh-hcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHH-hcCChHHHHHHHH
Q 016464 255 LSIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI-RTGSPRNRENAAA 332 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll-~~~~~~~~~~a~~ 332 (389)
-.....+.. .|+.|++.+. +.+..++..|+..|+.+....+ ..++.++.++ ++.++.+|..|..
T Consensus 569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 443333322 3455555554 4667899999999998875432 3566777654 5678999999999
Q ss_pred HHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 333 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 333 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
+|+.++.+++.. .+++.|..+..+.+..||..|..+|..+.
T Consensus 635 ALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 635 ALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 999998876421 25777888889999999999999999885
No 149
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.38 E-value=4.6e-05 Score=59.22 Aligned_cols=214 Identities=14% Similarity=0.157 Sum_probs=151.2
Q ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHH
Q 016464 145 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVA 223 (389)
Q Consensus 145 ~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~ 223 (389)
..++..++.+|.++-..++.+|+.++.+++...+ .+.+ -.+..|+-+++ +.........+++++.++...+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~---el~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE---DLYE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG---GGHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH---HHHH-HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH---
Confidence 3578899999998888999999999999875321 1111 13456666665 44566666778888887644322
Q ss_pred HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhH
Q 016464 224 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 303 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 303 (389)
++ .+.++.+..-..-++++++.+...+|..++..++. .-.+++..+..++.+++..-+..|+..+..+.. +.
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe---n~ 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NS 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---TT
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---cC
Confidence 11 34567777777778999999999999998764432 223445677788887765555566666655543 33
Q ss_pred HHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 304 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 304 ~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
...+. -.++.|..+|++.+.-+|..|+.+|.+++..++..+.. +..-++-+.+.++.++....+.|..+.
T Consensus 176 ~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 33222 37899999999999999999999999999999876553 334445566778888888888888774
No 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.35 E-value=4.8e-05 Score=76.00 Aligned_cols=269 Identities=16% Similarity=0.190 Sum_probs=179.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh---hhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
.+.+..+.+.+...... +.|+..+..++.... ..--.++ +.++.++....+....+|..|-.++..+...-..
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 46788888888755333 889999999884332 1222233 6788899988888888998888777776542111
Q ss_pred cchhcccCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016464 180 KGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
- .+ ..++|.|+..|.+. ....+..|+.++..|+...+.+-...-...||.+.+.+.+..+++...|..++..+|..
T Consensus 129 ~-a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 129 V-AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp G-GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred H-HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 1 11 34688999989765 58899999999999986543333223348899999999999999999999999998875
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016464 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
-.|+.. ...+|.|++.+.+++. ...++..|..-..-.+...--. .=.+|.|.+-|...+..+++.++.++.|+|
T Consensus 206 ~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 206 VDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp CCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred CCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence 444311 3467899999986632 3333433332221111100000 013455666666667888899999999999
Q ss_pred h--cCHHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhhHhh
Q 016464 339 T--GDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 339 ~--~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
. ++|.....++- ..+|-|...... .+|++|+.|.+++..|.+....
T Consensus 280 ~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 280 KLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 8 45655544332 345555554443 4899999999999999776554
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.27 E-value=0.0003 Score=69.62 Aligned_cols=241 Identities=16% Similarity=0.099 Sum_probs=159.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHh-cCCChHHHHHHHHHHHhcccccccc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNK 180 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~ 180 (389)
+...++.|...|..++...+..|+..|+.+-.++... .++..|+..+ ...+..+++.++..|+.+..
T Consensus 470 ~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~----- 537 (963)
T 4ady_A 470 NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY----- 537 (963)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC-----
Confidence 4567888888888777766677777777764433211 1345555554 34577889988888876532
Q ss_pred chhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccC
Q 016464 181 GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~ 258 (389)
.+...++.+++.|. +.++.++..++.+++--.....+ ..+|+.|++.+. +.+..++..|+.+|+.+...
T Consensus 538 ---g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 538 ---GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp ---TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred ---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 23456788888886 46788888888877643222222 234566666654 55778999999999987655
Q ss_pred CCchHHHHhcCCcHHHHHHHh-hcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 016464 259 QGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 337 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l 337 (389)
++ ..++.++..|. +.++.++..|..+|+.++...... .++..|..+.++.+..++..|+.+|..+
T Consensus 609 ~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 609 DY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp SC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 43 34566666554 578899999999999987543221 2567788888888999999999999999
Q ss_pred hhcCHHHH-HHHHhcCcHHHHHHHHHh--CChHHHHHHHHHHHHH
Q 016464 338 CTGDAEQL-KIARELDAEEALKELSES--GTDRAKRKAGSILELL 379 (389)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~l 379 (389)
..++.+.. ..+ .++...|.....+ .++..+-.+.-+...+
T Consensus 675 g~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 675 LIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp STTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 87643220 000 1234456666654 3566776666666555
No 152
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.23 E-value=3.2e-05 Score=70.24 Aligned_cols=230 Identities=15% Similarity=0.111 Sum_probs=151.5
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHHhhChhhhHHHHhcC--CHHHHHHHhcC---------------C--ChHHHHHHHH
Q 016464 109 LLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAG--AIPLLVELLSS---------------T--DPRTQEHAVT 168 (389)
Q Consensus 109 l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~lL~~---------------~--~~~~~~~a~~ 168 (389)
++..|.+ ++.+.+.-++.+|..+.. .+++|..+.+.+ .++.+++++.. + ...++..++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 3444544 245567778899998887 678888887653 46666654431 1 2456899999
Q ss_pred HHHhccccccccchhcccCCh--HHHHHHHcc-CCHHHHHHHHHHHHHhcCCch-----hhHH-HHhhCcHHHHHHHhcc
Q 016464 169 ALLNLSINDSNKGTIVNAGAI--PDIVDVLKN-GSMEARENAAATLFSLSVIDE-----NKVA-IGAAGAIPALIRLLCD 239 (389)
Q Consensus 169 ~L~~l~~~~~~~~~i~~~g~l--~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~-----~~~~-~~~~~~i~~L~~ll~~ 239 (389)
+++-|+.+++....+...+.. +.|+.+++. ..+.+.+-++.+|.|+..... .... +...++ ..+++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988877777766543 566777764 468899999999999987641 1122 222344 456666654
Q ss_pred C---ChhhHHHHHHHH-------HHhc---------------cCCC---------chHHHHhc--CCcHHHHHHHhh---
Q 016464 240 G---TPRGKKDAATAI-------FNLS---------------IYQG---------NKARAVRA--GIVPPLMRFLKD--- 280 (389)
Q Consensus 240 ~---~~~~~~~a~~~L-------~~L~---------------~~~~---------~~~~~~~~--~~i~~L~~ll~~--- 280 (389)
. |+++.+..-... ..++ -.+. |..++-+. .++..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 444443322111 1111 1111 11122222 357889999974
Q ss_pred -------cCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 281 -------AGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 281 -------~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
.++.+..-|+.=|+.++ .+|.+|..+-+.|+=..+++++.+.+++++.+|+.++..+..+
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24566677777788887 4688888887788889999999999999999999998876543
No 153
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=3.1e-05 Score=66.85 Aligned_cols=147 Identities=11% Similarity=0.028 Sum_probs=118.1
Q ss_pred HHHHhccCChhhHHHHHHHHHH-hccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc-cC
Q 016464 233 LIRLLCDGTPRGKKDAATAIFN-LSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AE 310 (389)
Q Consensus 233 L~~ll~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~ 310 (389)
+++-|.+.+.+.+..++.-|.. +..+..-...|+..+|+..|+.+....+.+.+.+++.+|.+|..+..+-..++. ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444556677778888888888 555667778999999999999999999999999999999999999999877774 56
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhc----------CcHHHHHHHHH---hCChHHHHHHHHHHH
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL----------DAEEALKELSE---SGTDRAKRKAGSILE 377 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~~~~L~~ll~---~~~~~~~~~a~~~L~ 377 (389)
.+..+..++.+....+...|+.+|..++..++.....+.+. .-.+.|+.+++ +.+.+++..|..+|-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 89999999998888999999999999988764333333221 13778999997 668899988887776
Q ss_pred HH
Q 016464 378 LL 379 (389)
Q Consensus 378 ~l 379 (389)
.+
T Consensus 283 ~l 284 (339)
T 3dad_A 283 KT 284 (339)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 154
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.98 E-value=6.1e-05 Score=75.24 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=175.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
..+..+++.+...+...+..+...+..+..+.... .....+++..|.+.+.+.... +.|+.++..|+........+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 34555666666655556677888888876533211 112236778888888775333 89999999988644332211
Q ss_pred --cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccCC
Q 016464 184 --VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 184 --~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~ 259 (389)
.--+.++.++....+....++..|..++..+... ++... ..+++.|+..+.+. .-..+..|+.++..|+...
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1125688888888888888888877777666422 12111 34678888888765 5788899999999998765
Q ss_pred CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016464 260 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 260 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.......-..+||.+.+.+.+..+++...|..++..+|..-.++.. ...++.|++.+.+.+. ...++..|+.-+.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf 240 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCee
Confidence 4333344468899999999999999999999999999975544433 2478999999987743 3344555544333
Q ss_pred cC---HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 340 GD---AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 340 ~~---~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
-. ..... =.+|.|.+-+...+..++++++.++.||++.
T Consensus 241 v~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 241 VAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp CSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred EeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 21 11111 1456666666777889999999999999864
No 155
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.98 E-value=4.4e-06 Score=57.48 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred cCcCCcccCcCCe-ecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 13 RCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.|+.|.-.+..-. .+||+|.||..|+..|..++...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888988776544 58999999999999999887889999998875
No 156
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=1.1e-05 Score=53.40 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=37.8
Q ss_pred CCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcC-CCCCCCCCccCc
Q 016464 11 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAG-HKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~ 57 (389)
.-.|.||.+.+..=.. ..|+|.|-..||.+||... ..+||.|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3689999998864333 3699999999999999853 368999998764
No 157
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.85 E-value=0.00019 Score=65.87 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=157.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh--hHHHHhcCCHHHHHHHhcC-------C---ChHHHHHHHHHHHh
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADN--RVCIAEAGAIPLLVELLSS-------T---DPRTQEHAVTALLN 172 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~g~v~~L~~lL~~-------~---~~~~~~~a~~~L~~ 172 (389)
....|+..|-++.+++|.-|+..|+.+.+..... +..-.+....-.|+-++.- + -..+|+.++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 6788888889999999999999999987654321 1100011222233333311 1 24689999999999
Q ss_pred ccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016464 173 LSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 173 l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
+ .+-+.. ..++..++..+..+..+++..++-.|..+ .+.... -.++++.++..|.+.+++++..|+.+|
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 8 533222 23455555555778899999999999988 111111 246788888999999999999999999
Q ss_pred HHhccCCCchHHHHhcCCcHHHHHHHhh----c-C-cccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHH
Q 016464 253 FNLSIYQGNKARAVRAGIVPPLMRFLKD----A-G-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRN 326 (389)
Q Consensus 253 ~~L~~~~~~~~~~~~~~~i~~L~~ll~~----~-~-~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~ 326 (389)
..++ ....++.++..+.+ - + ..-....+..|+.|+..+.. .-.....++.|..++++.-..+
T Consensus 324 iPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 324 CHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp TTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHH
T ss_pred hhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHH
Confidence 9988 22334444444433 2 1 22345667788888876642 2223468999999999999999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHH-HHHHhCChHHHHHHHHHHH
Q 016464 327 RENAAAVLWAICTGDAEQLKIARELDAEEALK-ELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 327 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~~~~~a~~~L~ 377 (389)
|..++.+|..+. +. .++..+. .++-..+++++..+.++-+
T Consensus 392 R~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998776 21 1233333 3555667888887776654
No 158
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.81 E-value=0.00039 Score=71.04 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc------CCChHHHHHHHHHHHhccccccccchhccc-----CC
Q 016464 120 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLNLSINDSNKGTIVNA-----GA 188 (389)
Q Consensus 120 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-----g~ 188 (389)
.+..|...|..++...++ .+. ..+++.+.+.+. +.+...++.|+.+++.++........-... ..
T Consensus 377 ~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 456677777777764431 111 113344444454 456778899999999987532111110000 22
Q ss_pred hH----HHHHHHccC---CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-
Q 016464 189 IP----DIVDVLKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG- 260 (389)
Q Consensus 189 l~----~L~~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~- 260 (389)
.+ .++..|.++ .+.++..|+++++.++..-. .. .-...++.+++.|.+++..++..|+.+|.+++...+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 22 234445666 88999999999999986421 11 124567888888888888999999999999987421
Q ss_pred --------chHHHHh--cCCcHHHHHHHhhcC-----cccHHHHHHHHHHHhcChh-hHHHhhccCChHHHHHHHhc---
Q 016464 261 --------NKARAVR--AGIVPPLMRFLKDAG-----GGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRT--- 321 (389)
Q Consensus 261 --------~~~~~~~--~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~v~~L~~ll~~--- 321 (389)
.+..+.. ..+++.|+.++.... ....+.++.+|..++.... .-.... ...++.|...+..
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~ 608 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAK 608 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTT
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHh
Confidence 1222221 234555666665531 1134567777776653211 111111 1234455555433
Q ss_pred --CChHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 322 --GSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 322 --~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+...+..++.+|..++.. +++....+ ...+++.+..+++....+....+..++..+.+.
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 609 NPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 2456667788888887765 33333322 334677777778776666677777777766544
No 159
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.79 E-value=2.3e-05 Score=49.79 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=39.2
Q ss_pred CCCcCcCCcccCcCCeecCCcc-----CccHHHHHHHHhc-CCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h-----~~c~~ci~~~~~~-~~~~cp~c~~~~~ 57 (389)
+.-.|.||+....+|...||.. -|-+.|+.+|+.. ++.+||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999998878887788653 7899999999974 5678999998764
No 160
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.55 E-value=0.0014 Score=55.32 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=122.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHh----cCCChHHHHHHHHHHHhccc---ccccc
Q 016464 108 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL----SSTDPRTQEHAVTALLNLSI---NDSNK 180 (389)
Q Consensus 108 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL----~~~~~~~~~~a~~~L~~l~~---~~~~~ 180 (389)
.+...|.+.|...+..|+..|......+++ ..+ ..+..+++-+ .+.+..+...++.+|..+.. ..+++
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455666678898999999999887654432 122 1233333322 35688888888888877642 22222
Q ss_pred chhcc-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016464 181 GTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 181 ~~i~~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
-.-.+ .-++|.|+.-+.++.+.++..+-.++..+... ..-..+++.+.+-+++.+.+++..++..+..+....
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 22112 34789999999999999998888887766421 112346678888899999999999999998886543
Q ss_pred CchHHHHhcCCc---HHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016464 260 GNKARAVRAGIV---PPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 260 ~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
+.. ...++ +.+..++.+.+..++..|+.++..+-.
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 322 23468 999999999999999999998886653
No 161
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.001 Score=57.36 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=123.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhh--HH-HHhc-CCHHHHHHHhcCCChHHHHHHHHHHHhccccc---cc-c
Q 016464 109 LLGKLANGNVEEQRAAAGELRLLAKRNADNR--VC-IAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSIND---SN-K 180 (389)
Q Consensus 109 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-~~~~-g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~-~ 180 (389)
+-+.|.|.++..|.+|+..|..+....+... +. +... ...+.+-+.+.+.+..++..++.+|..++..- .. +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5578899999999999999998775433211 11 1111 34567778888889999999999988775421 11 1
Q ss_pred ch--hcccCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016464 181 GT--IVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 181 ~~--i~~~g~l~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
.. ..-..+++.|+.- |.+....++..+..++..+........ .+++.+...+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 1123467777765 677888888888888876653221111 134666777888899999999998888754
Q ss_pred CCCch---HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016464 258 YQGNK---ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 258 ~~~~~---~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
.-... ....-..+++.+..++.+.+++||..|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 31111 1111123556778888999999999999999888754
No 162
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.49 E-value=0.026 Score=48.74 Aligned_cols=240 Identities=14% Similarity=0.086 Sum_probs=168.9
Q ss_pred HHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc-cc----chhcc-cCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016464 141 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-NK----GTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 141 ~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~----~~i~~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
.+...+.+..|+..|..=+.+.|..+..+..++..... .+ ..+.. ..++..|+.--. ++++...+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence 45566889999999988899999999999988766432 22 12222 222333332222 456666777888888
Q ss_pred cCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCchHHHHhc---CCcHHHHHHHhhcCcccHHHHH
Q 016464 215 SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRA---GIVPPLMRFLKDAGGGMVDEAL 290 (389)
Q Consensus 215 s~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~ 290 (389)
...+.....+...+.+..+.+.+..++-++...|..++..|-. +......+... .+......+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 8888777777778888899999999999999999999887654 33344455543 3467777888888888999999
Q ss_pred HHHHHHhcChhhHHHh----hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC---HHHHHHHHhc--CcHHHHHHHH
Q 016464 291 AILAILASHQEGKTAI----GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD---AEQLKIAREL--DAEEALKELS 361 (389)
Q Consensus 291 ~~L~~l~~~~~~~~~i----~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~--~~~~~L~~ll 361 (389)
..|+.|-.+..+...+ .+..-+..++.+|++.+..++..|..+.--++.++ +.....+..+ ..+..|-.+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999887775544 33557899999999999999999999988887764 4555555554 2333333333
Q ss_pred HhC--ChHHHHHHHHHHHHHHhh
Q 016464 362 ESG--TDRAKRKAGSILELLQRI 382 (389)
Q Consensus 362 ~~~--~~~~~~~a~~~L~~l~~~ 382 (389)
.+. |+.....=..+++.|...
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHHHTC
T ss_pred CCCcchhhHHHHHHHHHHHHHhC
Confidence 333 555655555666666544
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.44 E-value=0.0036 Score=51.62 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=147.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcC-------CC-----hHHHHHHHHHHHh
Q 016464 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS-------TD-----PRTQEHAVTALLN 172 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~-------~~-----~~~~~~a~~~L~~ 172 (389)
+..++.-|.. ++.++.|+..|..--..-++-.-.+=.+ |.+..|++=+-+ +. ..-..+|+..|--
T Consensus 5 i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 4445554543 3457877776665433222222222222 666666543321 11 1122456666667
Q ss_pred ccccccccchhcccCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhccCChhhH
Q 016464 173 LSINDSNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGK 245 (389)
Q Consensus 173 l~~~~~~~~~i~~~g~l~~L~~lL~~~~-----~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~ 245 (389)
++++++.|..+.+..+.--|..+|+..+ +.++..++++++.|...+ +....+.+.+++|..++.+..+++-.+
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSK 162 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 162 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHH
Confidence 8999999999998877666777776543 568899999999998654 455666778999999999999998888
Q ss_pred HHHHHHHHHhccCCCchHHHHh--------cCCcHHHHHH-HhhcCcccHHHHHHHHHHHhcChhhHHHhhc-------c
Q 016464 246 KDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQ-------A 309 (389)
Q Consensus 246 ~~a~~~L~~L~~~~~~~~~~~~--------~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~ 309 (389)
.-|.-.+..+..++.+...+.. ..++..++.- ..++++.+...++.+-..|+.++..+..+.. .
T Consensus 163 tvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd 242 (268)
T 2fv2_A 163 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKD 242 (268)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTS
T ss_pred HHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhC
Confidence 8888888888776665444332 1122222322 2347778889999999999999998887653 2
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHH
Q 016464 310 EPIPVLMEVIRTGSPRNRENAAAVLWAI 337 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l 337 (389)
|.+..++ .+++.++.+-...+.|+
T Consensus 243 ~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 243 TTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp STTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred hHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 3333322 35677777777766665
No 164
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.21 E-value=0.0029 Score=64.60 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-----CCHH----HHHHHhcCC---ChHHHHHHHHHHHhccccccccch
Q 016464 115 NGNVEEQRAAAGELRLLAKRNADNRVCIAEA-----GAIP----LLVELLSST---DPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 115 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----g~v~----~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
+.++..++.|+.+++.++.+....... ... ...+ .++..|.+. ++.+|..|+++|+.++..- ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH
Confidence 567888999999999998532100000 000 1122 233344555 7899999999999988642 111
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch---------hhHHHHh--hCcHHHHHHHhccCC-----hhhHH
Q 016464 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE---------NKVAIGA--AGAIPALIRLLCDGT-----PRGKK 246 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~~~~--~~~i~~L~~ll~~~~-----~~~~~ 246 (389)
. -..+++.++..|.+++..++..|+.+|.+++...+ .+..+.. ...++.|+.++.... .....
T Consensus 493 ~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 1 23467888888888889999999999999986421 1222211 255666667776541 11334
Q ss_pred HHHHHHHHhccCC-CchHHHHhcCCcHHHHHHHhh-----cCcccHHHHHHHHHHHhcC--hhhHHHhhccCChHHHHHH
Q 016464 247 DAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEV 318 (389)
Q Consensus 247 ~a~~~L~~L~~~~-~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~v~~L~~l 318 (389)
.++.+|..++..- +...... ..+++.|...+.. .+......++.+|..++.. ++.... .....++.+...
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHH
Confidence 5566666554321 1111111 1244555555543 2334555677888877754 222222 223366777777
Q ss_pred HhcCChHHHHHHHHHHHHHh
Q 016464 319 IRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 319 l~~~~~~~~~~a~~~L~~l~ 338 (389)
+.....+....+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 77665556666666665554
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.18 E-value=0.022 Score=47.06 Aligned_cols=144 Identities=22% Similarity=0.168 Sum_probs=104.9
Q ss_pred ChhhHHHHHHHHHHhccCCCchHH-HH-hcCCcHHHHHHHhhcC-----cc-------cHHHHHHHHHHHhcChhhHHHh
Q 016464 241 TPRGKKDAATAIFNLSIYQGNKAR-AV-RAGIVPPLMRFLKDAG-----GG-------MVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 241 ~~~~~~~a~~~L~~L~~~~~~~~~-~~-~~~~i~~L~~ll~~~~-----~~-------~~~~a~~~L~~l~~~~~~~~~i 306 (389)
+++.|+.|+.-|..=-..-++-.- +- ..|.+..|++=+-+.. +. -..+|+..|..++++++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 345566655544432221122222 22 2466666655443321 12 2357888889999999999999
Q ss_pred hccCChHHHHHHHhcCC-----hHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 307 GQAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
++++..--|..+|+..+ +.+|-.++++++.|... +++....+.+..+++..++.++.|++-.|.-|..++..+-
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99998888888888754 56789999999999875 5788889999999999999999999999999999999886
Q ss_pred hhHh
Q 016464 381 RIDM 384 (389)
Q Consensus 381 ~~~~ 384 (389)
..+.
T Consensus 174 ~dd~ 177 (268)
T 2fv2_A 174 LDDT 177 (268)
T ss_dssp HSHH
T ss_pred ccch
Confidence 5543
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0024 Score=54.94 Aligned_cols=185 Identities=11% Similarity=0.113 Sum_probs=120.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCch---hhHHHHh--hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC----ch
Q 016464 192 IVDVLKNGSMEARENAAATLFSLSVIDE---NKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG----NK 262 (389)
Q Consensus 192 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~----~~ 262 (389)
|-+-|.+.+...|..|+..|..+..... ....... ....+.+-..+.+.+..+...++.+|..++..-. ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6678889999999999998877653321 1111111 2345566677888899999999999988875322 11
Q ss_pred HH--HHhcCCcHHHHHH-HhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016464 263 AR--AVRAGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 263 ~~--~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.. ..-..+++.|++- +.+....++..+..++..++........ ++..+...+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 2234566777764 6667777888888888777643221111 34556666778899999999988888654
Q ss_pred c-CHHH--HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016464 340 G-DAEQ--LKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 340 ~-~~~~--~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
. +... ....+ ..+++.+..++.+.++.||..|..++..+-++
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 1100 01111 12455677888999999999999998877543
No 167
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.15 E-value=0.025 Score=57.77 Aligned_cols=213 Identities=15% Similarity=0.022 Sum_probs=123.1
Q ss_pred CChHHHHHHHHHHHhccccccccchhcccCChHHHHHHH---c--cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHH
Q 016464 158 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---K--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPA 232 (389)
Q Consensus 158 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL---~--~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~ 232 (389)
.+...++.++.+++.++....... ...++.++.++ . +.++.++..++++++.++..-..... .-..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIPPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 466788999999999876432111 12344444443 3 34789999999999998743111111 11245667
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCchHHHH--hcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcCh--hhHHHh
Q 016464 233 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV--RAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQ--EGKTAI 306 (389)
Q Consensus 233 L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~--~~~~~i 306 (389)
++..+ + +.++..|+.++.+++..- +..+. -.+++..+..++.. .+.+.+..++.+++.++..- +.+...
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777 3 789999999999999542 22232 23566667777776 34677888888888887532 222222
Q ss_pred hccCChHHHHHHH----hcC--ChHHHHHHHHHHHHHhhc-----CH-----------HHHHHHHhcCcHHHHHHHHHhC
Q 016464 307 GQAEPIPVLMEVI----RTG--SPRNRENAAAVLWAICTG-----DA-----------EQLKIARELDAEEALKELSESG 364 (389)
Q Consensus 307 ~~~~~v~~L~~ll----~~~--~~~~~~~a~~~L~~l~~~-----~~-----------~~~~~~~~~~~~~~L~~ll~~~ 364 (389)
++ ..+..++..+ +.. +++.+......+..|+.. .. +... -....+++.+..++...
T Consensus 626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhc
Confidence 22 1334444433 322 333344444444444321 10 0001 11235777777777653
Q ss_pred --ChHHHHHHHHHHHHHHhh
Q 016464 365 --TDRAKRKAGSILELLQRI 382 (389)
Q Consensus 365 --~~~~~~~a~~~L~~l~~~ 382 (389)
++.+.+.+.++++.+...
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 678999999999987654
No 168
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.14 E-value=0.00012 Score=62.95 Aligned_cols=48 Identities=21% Similarity=0.568 Sum_probs=37.5
Q ss_pred CCCcCcCCcccCcC----Cee----cCCccCccHHHHHHHHhcCC----------CCCCCCCccCc
Q 016464 10 DDFRCPISLELMKD----PVI----VSTGQTYERSCIQKWLDAGH----------KTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~----pv~----~~c~h~~c~~ci~~~~~~~~----------~~cp~c~~~~~ 57 (389)
..-.|+||...+.+ |.. ..|||.|...|+.+|+.... ..||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44579999998876 432 36999999999999997411 25999999875
No 169
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.09 E-value=7.1e-05 Score=62.77 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Q 016464 313 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 313 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
+.|..++.+.+..+|..++..+. .+.|..| ++.+..|+..+...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 44555666667777776666532 3556666 888899998887544
No 170
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.91 E-value=0.02 Score=49.38 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=146.9
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh----hHHHHhc-CCHHHHHHHhcCCChHHHHHHHHHHHhcccc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN----RVCIAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSIN 176 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~-g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~ 176 (389)
..+.+..|+..|..-+.+.+..+.....++.+..... .+++... .++..|++--. ++++.-.+-.+|.....+
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHh
Confidence 4567888888888889999999999999988754432 2233321 23333333333 455656666677777777
Q ss_pred ccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhh---CcHHHHHHHhccCChhhHHHHHHHH
Q 016464 177 DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 177 ~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
+.....+...+.+..+.+.+..++-++...|..++..|-... ......... .++...-.+|.+++.-++..++..|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 777777777778889999999999999999999888875443 222222222 4677778899999999999999999
Q ss_pred HHhccCCCchHHHHh----cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016464 253 FNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 253 ~~L~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
+.|..+..|...+.. ..-+..++.+|.+.+..++..|..++.-...+|.
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999888766553 3558889999999999999999999988876654
No 171
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.84 E-value=0.12 Score=52.68 Aligned_cols=132 Identities=13% Similarity=0.047 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh---c--cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHH
Q 016464 199 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---C--DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 273 (389)
Q Consensus 199 ~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll---~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~ 273 (389)
.+...++.++.+++.++..-.... ...++.++.++ . +.++.++..++++++.++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456688899999999876532211 12333333332 3 3478899999999998875321111111 124455
Q ss_pred HHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc--cCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhc
Q 016464 274 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTG--SPRNRENAAAVLWAICTG 340 (389)
Q Consensus 274 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~ 340 (389)
|+..| + +.++..|+.++.+++.. .+..+.. ...+..+..++.+. +...+..+..++..++..
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 66666 3 78999999999999943 2233321 34566677777763 567888888888888663
No 172
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.0014 Score=60.30 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc-ccCChHHHHHHH
Q 016464 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVL 196 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~l~~L~~lL 196 (389)
..+|+.|+.+|+.+ ..-+.. ..++..++..+.....++|..++-.|..+ ++.+. -.++++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhc
Confidence 46888888888888 554443 34455555555778899999999999988 22222 256788899999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC-h-hhHHHHHHHHHHhccCCCchHHHHhcCCcHHH
Q 016464 197 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-P-RGKKDAATAIFNLSIYQGNKARAVRAGIVPPL 274 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L 274 (389)
++.+++++..|+.+|..++ .++.. ..++..+.+.|.+.+ - ......+..|..|+..+... ......+|.|
T Consensus 309 ~D~DDDVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL 380 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI 380 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred CCcccHHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence 9999999999999999988 22111 233445555555432 1 22334456677776655321 1124778999
Q ss_pred HHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHH-HHhcCChHHHHHHHHHH
Q 016464 275 MRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME-VIRTGSPRNRENAAAVL 334 (389)
Q Consensus 275 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~-ll~~~~~~~~~~a~~~L 334 (389)
..++.++-..|+..++.+|..+.. ...+..+.+ +|-..+++++..+..+-
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999999987761 113333333 33456677776666554
No 173
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.80 E-value=0.13 Score=52.52 Aligned_cols=215 Identities=11% Similarity=0.087 Sum_probs=123.8
Q ss_pred cCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHH---ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHH
Q 016464 156 SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPA 232 (389)
Q Consensus 156 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL---~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~ 232 (389)
.+.+...++.++.+++.++..-... ....++.++..+ .++++.++..++++++.++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 4457788999999999988643211 123455555555 3357889999999999987532111121 2478888
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCchHHHH--hcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcCh--hhHHHh
Q 016464 233 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV--RAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQ--EGKTAI 306 (389)
Q Consensus 233 L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~--~~~~~i 306 (389)
++..+.+ +.++..|+.++.+++..-. ..+. -..++..|..++.. .+.+.+..++.+++.++... +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 7899999999999985322 1121 12334444555554 24567888888998887532 333333
Q ss_pred hccCChHHHHHHHh----cC-ChHHHHH---HHHHHHHHhhc----CH------------------HHHHHHHhcCcHHH
Q 016464 307 GQAEPIPVLMEVIR----TG-SPRNREN---AAAVLWAICTG----DA------------------EQLKIARELDAEEA 356 (389)
Q Consensus 307 ~~~~~v~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~----~~------------------~~~~~~~~~~~~~~ 356 (389)
++ ..++.+...+. .. +++.+.. ...+|..+... .+ ..... ....+++.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 687 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHHHH
Confidence 22 24445554443 22 4444443 33334333321 00 00111 12235555
Q ss_pred HHHHHHh--CChHHHHHHHHHHHHHHh
Q 016464 357 LKELSES--GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 357 L~~ll~~--~~~~~~~~a~~~L~~l~~ 381 (389)
+..++.. .+..+.+.+..+++.+..
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 5555543 367888888888887654
No 174
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.75 E-value=0.00063 Score=48.55 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCcCcCCcc-cCcCCee--cCCccCccHHHHHHHHh
Q 016464 10 DDFRCPISLE-LMKDPVI--VSTGQTYERSCIQKWLD 43 (389)
Q Consensus 10 ~~~~Cpic~~-~~~~pv~--~~c~h~~c~~ci~~~~~ 43 (389)
+++.|++|.+ ++.+|+. +.|+|+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 5789998 89999999999998554
No 175
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.64 E-value=0.013 Score=50.72 Aligned_cols=137 Identities=10% Similarity=0.131 Sum_probs=90.1
Q ss_pred ChhhHHHHHHHHHHhccCCCchHHHHhc--CCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhh-ccCChHHHHH
Q 016464 241 TPRGKKDAATAIFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG-QAEPIPVLME 317 (389)
Q Consensus 241 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~~~v~~L~~ 317 (389)
.+..+..+++++.|+..++..+..+... .+++.+...+.+.+..++..+..++.|++.........- ...++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4556888999999999988887776652 334444444444577888899999999986322110000 0113444555
Q ss_pred HHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHH
Q 016464 318 VIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILE 377 (389)
Q Consensus 318 ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~ 377 (389)
++.. .+.+....++.+|++|...+.+..+.....|+...+-.+... ..+++.+.+..+|.
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 5543 468888999999999998877666666666766666656555 35677777766654
No 176
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.60 E-value=0.025 Score=47.72 Aligned_cols=179 Identities=12% Similarity=0.106 Sum_probs=112.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhC-cHHHHHHHhccCChhhHHHHHHHHHHhcc---CCCchHHH
Q 016464 190 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG-AIPALIRLLCDGTPRGKKDAATAIFNLSI---YQGNKARA 265 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L~~L~~---~~~~~~~~ 265 (389)
+.+...|-+.+...+..++..|.......+ ...+...+ .++.+.-.+.+.+..+...++.+|..+.. ..+.+..-
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 345555556666666666666665432111 11111111 23333333456788888888887777642 11111111
Q ss_pred Hh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHH
Q 016464 266 VR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 344 (389)
Q Consensus 266 ~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 344 (389)
.+ .-++|.|++-+.++.+.+++.+-.++..+..... -..+++.+++-+.+.+.++|..++..+..+.......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 3367889888888888899988888877763211 0125566777778889999999999998876532111
Q ss_pred HHHHHhcCcH---HHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 345 LKIARELDAE---EALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 345 ~~~~~~~~~~---~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
....+ +.+..++.+.|..+|..|..++..+-
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23467 88999999999999999998887653
No 177
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.54 E-value=0.13 Score=52.30 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=105.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh---ccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHH
Q 016464 197 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 273 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~ 273 (389)
.+.+...++.++.+++.++..-... ....++.++..+ .++++.++..++++++.++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 4456788899999999988652210 122334444443 3356789999999999887531111122 2467888
Q ss_pred HHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc--cCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhcC-HHHHHHH
Q 016464 274 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGD-AEQLKIA 348 (389)
Q Consensus 274 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~ 348 (389)
++..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++.+. +...+..+..++..++... ++.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999952 2233321 22444555566653 4678888888888887543 2333332
Q ss_pred HhcCcHHHHHHHHH----hC-ChHHHHHHHHHHHHHHh
Q 016464 349 RELDAEEALKELSE----SG-TDRAKRKAGSILELLQR 381 (389)
Q Consensus 349 ~~~~~~~~L~~ll~----~~-~~~~~~~a~~~L~~l~~ 381 (389)
.+ .+++.+...++ .. +++.+......+..|+.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 22 24444444332 22 56666665555555543
No 178
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.96 E-value=0.3 Score=44.38 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcc
Q 016464 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
-..++... .++...+.-|...|..+..+-++..+. ++..++++.++++..+|..|+..|..++.+ +..
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i----- 98 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL----- 98 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-----
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-----
Confidence 44444544 356889999999999998877775543 568999999999999999999999999987 332
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016464 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
..+.+.|+++|..+++.....+-.+|..|...++ .+.+..+..-+..+++.+|+.++..|..
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 2356889999998887766666666666543222 2455566666666678888888887764
No 179
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.91 E-value=0.0082 Score=49.87 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=38.0
Q ss_pred CCcCcCCcccCcCCeecC-CccCccHHHHHHHHhc-CCCCCCCCCccCcC
Q 016464 11 DFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDA-GHKTCPKTQQTLLH 58 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~-~~~~cp~c~~~~~~ 58 (389)
...|.+|.++...-+..+ |++.|...|+..|+.. +...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 567999999887544443 9999999999999975 34689999887543
No 180
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.89 E-value=0.0008 Score=56.35 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=80.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCC
Q 016464 109 LLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA 188 (389)
Q Consensus 109 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 188 (389)
+..+++++++.++..++..| ..+.|..++++++..+|..++..| .
T Consensus 79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~l---~-------------- 123 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---P-------------- 123 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS---C--------------
T ss_pred HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHhC---C--------------
Confidence 45566677777777777542 124566777778888887777642 1
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH-----HhccCCC--c
Q 016464 189 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF-----NLSIYQG--N 261 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~-----~L~~~~~--~ 261 (389)
.+.|..++++++..++..++.. +. .+.+..++++++..++..++..+. .+..+++ .
T Consensus 124 ~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~V 186 (244)
T 1lrv_A 124 LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEV 186 (244)
T ss_dssp TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHH
Confidence 1234445666777777766652 11 012223344444444444443210 0001110 0
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHH
Q 016464 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 334 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L 334 (389)
+...+..-..+.|..++.+++..|+..++..+. .+.|..+ .+.+..++..+...|
T Consensus 187 R~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 187 RRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 011111112345555666666666666655432 3455555 777888888876544
No 181
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.81 E-value=0.68 Score=47.16 Aligned_cols=273 Identities=12% Similarity=0.014 Sum_probs=149.4
Q ss_pred hHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhhChhh----hHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccc
Q 016464 104 AAIDALLGKLANG---NVEEQRAAAGELRLLAKRNADN----RVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 104 ~~i~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~ 175 (389)
++.......|.++ +.+++.-|+..|.+....-+.. ....++...+..+.+.-. .+..-++...+.+|..++.
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 3567777777654 6889999999998766522222 223333334444443110 2356788888888888765
Q ss_pred cccccchhcccCChHHHHHHHccCCH-HHHHHHHHHHHHhcCC---------ch--h-----hHHHHhh---CcHHHHHH
Q 016464 176 NDSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVI---------DE--N-----KVAIGAA---GAIPALIR 235 (389)
Q Consensus 176 ~~~~~~~i~~~g~l~~L~~lL~~~~~-~~~~~a~~~L~~Ls~~---------~~--~-----~~~~~~~---~~i~~L~~ 235 (389)
..-.. .=.+.++.++.++..++. ......+++|..+++. .. . +..+.+. .+++.+..
T Consensus 120 ~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~ 196 (980)
T 3ibv_A 120 QLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYE 196 (980)
T ss_dssp HHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHH
Confidence 43110 014577888888876443 3444555666533211 00 1 1222211 11334444
Q ss_pred Hhc----cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC---hhhHHHhhc
Q 016464 236 LLC----DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH---QEGKTAIGQ 308 (389)
Q Consensus 236 ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~ 308 (389)
+|. ..++.++..++.+|.....-- ....++..+.++.+..+|.+ ++++..|+.+|..+... ++.+..++.
T Consensus 197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 197 MMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 443 367788888888888877632 23445566777777777764 78999999999998753 333444433
Q ss_pred cCChHHHHHHHh--cCChHHHHHHHHHHHHHhh------cC-----HHHHHHHH--hcCcHHHHHHHHHhCChHHHHHHH
Q 016464 309 AEPIPVLMEVIR--TGSPRNRENAAAVLWAICT------GD-----AEQLKIAR--ELDAEEALKELSESGTDRAKRKAG 373 (389)
Q Consensus 309 ~~~v~~L~~ll~--~~~~~~~~~a~~~L~~l~~------~~-----~~~~~~~~--~~~~~~~L~~ll~~~~~~~~~~a~ 373 (389)
.-.+...+..+. ..+.+..+.-+.++..++. .. ++...... -.++++.++.+..+++.++...+.
T Consensus 274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~ 353 (980)
T 3ibv_A 274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF 353 (980)
T ss_dssp HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 201111111112 3455554433333332221 11 11111111 125788888888888888888777
Q ss_pred HHHHHHHhh
Q 016464 374 SILELLQRI 382 (389)
Q Consensus 374 ~~L~~l~~~ 382 (389)
..+..+...
T Consensus 354 ~Fw~~~l~~ 362 (980)
T 3ibv_A 354 PFLSDLLVS 362 (980)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
No 182
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.77 E-value=0.15 Score=44.07 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=94.7
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHH----HHHc-cCCHHHHHHHHHHHHHhcCCchhh
Q 016464 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV----DVLK-NGSMEARENAAATLFSLSVIDENK 221 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~----~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~ 221 (389)
.+..+.+++ .-..+.+--++.++.-++.++.....+.+.+.-..++ ..+. +..+..+..+++++.|+...+..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345666666 4444555566666666555554444444322222333 3332 235666888999999999888777
Q ss_pred HHHHhh--CcHHHHHHHhccCChhhHHHHHHHHHHhccCCC---chHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHH
Q 016464 222 VAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG---NKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAI 295 (389)
Q Consensus 222 ~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~ 295 (389)
..+... .+++.+...+.+.+..++..++.++.|++.... .... ...++..+..++.. .+.+....++-+|++
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 766542 455555555556688899999999999985311 1111 11133444444543 566778888899999
Q ss_pred HhcChhhHHHhhc
Q 016464 296 LASHQEGKTAIGQ 308 (389)
Q Consensus 296 l~~~~~~~~~i~~ 308 (389)
|...+.....+.+
T Consensus 261 L~~~~~~~~~lak 273 (304)
T 3ebb_A 261 LISDDSNAVQLAK 273 (304)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCChhHHHHHH
Confidence 9876544444443
No 183
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.012 Score=51.55 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=48.0
Q ss_pred CcCcCCcccCcCCee-cCCccC--ccHHHHHHHHh-cCCCCCCCCCccCcCCCCCccHHHHHHHHH
Q 016464 12 FRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 73 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~-~~c~h~--~c~~ci~~~~~-~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~ 73 (389)
+.||+....|..|+- ..|.|. |....+..... .+...||+|...+...++..+..+...+..
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 799999999999996 679997 65554544443 355789999999988888888777665544
No 184
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.01 E-value=0.098 Score=53.43 Aligned_cols=142 Identities=9% Similarity=-0.004 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-----CChHHHHHHHHHHHhccccccccchhcccCChH
Q 016464 116 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP 190 (389)
Q Consensus 116 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~ 190 (389)
.++..++.++++++.++.+-.+....-.-..+++.|+.++.+ ....++..++++++..+.--.....+. ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 579999999999999986544332222223567888888864 223345567789888764211111111 22455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh------hCcHHHHHHHh----ccCChhhHHHHHHHHHHhccCCC
Q 016464 191 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA------AGAIPALIRLL----CDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 191 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~------~~~i~~L~~ll----~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
.|++.+.++++.++..|++++.+++.. .+..+.. ...++.++..+ ..-+.........+++.+...-+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 566666667789999999999999853 3333321 12344444333 33456666777788888776544
No 185
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.94 E-value=0.25 Score=40.49 Aligned_cols=145 Identities=15% Similarity=0.021 Sum_probs=98.8
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHH-HhccCChhhHHHHHHHHHHhcc-CCCchHHH
Q 016464 188 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSI-YQGNKARA 265 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~~ 265 (389)
.++....+.+++..++|..|+.+|..+ ... ...++.+.. +..+++-.+++.++.++..++. ....
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 345555666777889999999998887 211 224455555 4456778999999999998874 2211
Q ss_pred HhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc-cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHH
Q 016464 266 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 344 (389)
Q Consensus 266 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 344 (389)
..++.+.....+++..++..|...+.--+..+.. ..+ .-.++.|-.+..+.+..+|....+.|..++..+|+-
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 2567888899999999999988776532321110 011 113444444555667899999999999999999987
Q ss_pred HHHHHhc
Q 016464 345 LKIAREL 351 (389)
Q Consensus 345 ~~~~~~~ 351 (389)
+..+++.
T Consensus 213 V~~~~~~ 219 (240)
T 3l9t_A 213 VKIELKN 219 (240)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7766654
No 186
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.90 E-value=0.19 Score=51.28 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHhccccccc-cchhcccCChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHH
Q 016464 158 TDPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIP 231 (389)
Q Consensus 158 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~l~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~ 231 (389)
.+...++.++++++.++..... ...-.-..+++.|+.++.. +...++..++++++..+..-...... -...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 4688899999999999874422 1211123467788888763 23445567778888776432211111 134556
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHh------cCCcHHHHHHH----hhcCcccHHHHHHHHHHHhcC
Q 016464 232 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR------AGIVPPLMRFL----KDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 232 ~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~ 299 (389)
.|+..+.++++.++..|++++.+||.. .+..+.. ...++.++..+ ..-+..-...+..+++.+...
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666666667788999999999999963 2233332 12344444333 334455566777888887754
No 187
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.88 E-value=0.028 Score=49.01 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCcCcCCcccCcCCee-cCCccC--ccHHHHHHHHh-cCCCCCCCCCccCcCCCCCccHHHHHHHHH
Q 016464 11 DFRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 73 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~-~~c~h~--~c~~ci~~~~~-~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~ 73 (389)
.+.||+....|..|+- ..|.|. |....+..... .+...||+|+..+...++..+.-+...+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 3789999999999996 679997 66555544443 355789999999988888887777665543
No 188
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.85 E-value=0.67 Score=38.29 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=89.2
Q ss_pred hhHHHHhcCCHHHHHHHhcC----C-------ChHHHHHHHHHHHhccccccccchhc-ccCChHHHHHHHccCCHHHHH
Q 016464 138 NRVCIAEAGAIPLLVELLSS----T-------DPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARE 205 (389)
Q Consensus 138 ~~~~~~~~g~v~~L~~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~ 205 (389)
....+ ..+|+..|+.+|.. + +......++.+|..+..+......+. .++++..|...|.++++.++.
T Consensus 36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~ 114 (233)
T 2f31_A 36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 114 (233)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 34444 46778888887753 1 34567788889988877766666555 477899999999999999999
Q ss_pred HHHHHHHHhcCCch--h-hHHHHh----------hCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCCc---hHH----
Q 016464 206 NAAATLFSLSVIDE--N-KVAIGA----------AGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGN---KAR---- 264 (389)
Q Consensus 206 ~a~~~L~~Ls~~~~--~-~~~~~~----------~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~~---~~~---- 264 (389)
.++..|..++..++ + ...+.+ ..-+..+++.+++ .+.+.+..++..+-.+....++ |..
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 194 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 194 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99998888876643 3 332221 2356667777764 3445555555555555555543 222
Q ss_pred HHhcCCcHHHHHHHhh
Q 016464 265 AVRAGIVPPLMRFLKD 280 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~ 280 (389)
+... |+..+++-+..
T Consensus 195 f~~~-Gl~~il~~l~~ 209 (233)
T 2f31_A 195 LMRL-GLHQVLQELRE 209 (233)
T ss_dssp HHHT-THHHHHHHHHH
T ss_pred HHHC-ChHHHHHHHhc
Confidence 3333 44555555554
No 189
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.84 E-value=1.3 Score=38.46 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc-cC
Q 016464 121 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NG 199 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~-~~ 199 (389)
...+...|..+ .++....+-+++.+++..+...+.-.+.++.+..+..|...+........-. ...+|-++..+. ++
T Consensus 260 vtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 260 IIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC
Confidence 34444444444 4677888999999999999999999999999999999988775433322212 346888888886 67
Q ss_pred CHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhc
Q 016464 200 SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLC 238 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~ 238 (389)
+.++.+.....|+|..... +.++.....|+|..|-..+.
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 8899999999999997765 45666677899999888764
No 190
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.69 E-value=1.3 Score=45.18 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC---ChHHHHHHHHHHHhccc--ccc----ccchhcccC
Q 016464 117 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST---DPRTQEHAVTALLNLSI--NDS----NKGTIVNAG 187 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~---~~~~~~~a~~~L~~l~~--~~~----~~~~i~~~g 187 (389)
|++.+.+|-..|..+-. +++ +......+|.++ +..+|..|+.+|.+... .++ .+..
T Consensus 21 d~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~----- 85 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM----- 85 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH-----
Confidence 78899999999988875 333 445666777654 68899999999987544 112 1211
Q ss_pred ChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCCh-hhHHHHHHHHHHhccC---
Q 016464 188 AIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIY--- 258 (389)
Q Consensus 188 ~l~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~L~~~--- 258 (389)
+-..++.++.. +...++...+.++..+....-.. ...+.++.++.++..++. ......+++|..+...
T Consensus 86 lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 86 IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 12233444432 34567777777777765321100 123677888888875443 3344455555533321
Q ss_pred -C--C-----ch-----HHHHhc---CCcHHHHHHHhh----cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHH
Q 016464 259 -Q--G-----NK-----ARAVRA---GIVPPLMRFLKD----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 318 (389)
Q Consensus 259 -~--~-----~~-----~~~~~~---~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~l 318 (389)
. . .+ ..+.+. .+++....+|.. .++.+...++.+|......-+. ..+++.+.++.+.++
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~ 241 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSF 241 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHH
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHH
Confidence 0 0 01 112211 113444444433 5667788888888887775433 344455677777777
Q ss_pred HhcCChHHHHHHHHHHHHHhhcC--HHHHHHHHhc-CcHHHHHHHHH-hCChHHHHHHHHHHHHH
Q 016464 319 IRTGSPRNRENAAAVLWAICTGD--AEQLKIAREL-DAEEALKELSE-SGTDRAKRKAGSILELL 379 (389)
Q Consensus 319 l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~-~~~~~L~~ll~-~~~~~~~~~a~~~L~~l 379 (389)
+.. +.++..|+.+|..+.... ++....++.. +..+.+-.+.. ..|.+..++-++++..+
T Consensus 242 L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 242 LQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp TTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred cCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 754 789999999999987753 3333323222 11111111222 35666665555555444
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.69 E-value=0.22 Score=45.20 Aligned_cols=122 Identities=18% Similarity=0.112 Sum_probs=85.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHH
Q 016464 197 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMR 276 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ 276 (389)
.+++...+..|+..|......-+.. +..++..+++++.+++..+|..|+..|..+|.+ +...++ .+.|++
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQ 107 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHH
Confidence 3567899999999998876553331 235789999999999999999999999999987 544443 467888
Q ss_pred HHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 016464 277 FLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 336 (389)
Q Consensus 277 ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~ 336 (389)
+|...++.....+-.+|..+.. ++. +.+..++..+.++++.+|+.++..|..
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 8887666555555555555443 222 345555555555667777777666643
No 192
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.60 E-value=0.7 Score=47.45 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh----hHHHHhcC---CHHHHHHHhcCCChHHHHHHHHHHHhccccc
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADN----RVCIAEAG---AIPLLVELLSSTDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~g---~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 177 (389)
.+-.|++.|+.-+.+........+. ..+.. .+.+...| .+..+.+.+.++.....+ |+.+|..+....
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC
Confidence 4445666666555444433333322 12223 33344445 555666666665433333 444443221111
Q ss_pred cccchhcccCChHHHHHHHcc----CCHHHHHHHHHHHHHhc----CCchhhHHHHhhCcHHHHH----HHhccCChhhH
Q 016464 178 SNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLS----VIDENKVAIGAAGAIPALI----RLLCDGTPRGK 245 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~----~~~~~~~~a~~~L~~Ls----~~~~~~~~~~~~~~i~~L~----~ll~~~~~~~~ 245 (389)
. -....+..+..++.+ .++.++..++-+++.|. .....+ ....++.+. +.+...+.+-+
T Consensus 387 ~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 387 Q-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp C-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHH
T ss_pred C-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHH
Confidence 0 122356667777764 35667777776666664 222111 112234444 44456677778
Q ss_pred HHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-----c--CcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHH
Q 016464 246 KDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----A--GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 318 (389)
Q Consensus 246 ~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~l 318 (389)
..++.+|+|+-.. ..++.|..++.. . ...++..|+.+|..++...+. .+-+.++++
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i 520 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHH
Confidence 8889999998542 345666666642 1 224667788888888753211 133556777
Q ss_pred Hhc--CChHHHHHHHHHHHH
Q 016464 319 IRT--GSPRNRENAAAVLWA 336 (389)
Q Consensus 319 l~~--~~~~~~~~a~~~L~~ 336 (389)
..+ .++++|..|+.+|..
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHH
Confidence 744 468889888887754
No 193
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.56 E-value=0.63 Score=41.65 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=96.2
Q ss_pred hCcHHHHHHHhc-----------cCChhhHHHHHHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHH
Q 016464 227 AGAIPALIRLLC-----------DGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILA 294 (389)
Q Consensus 227 ~~~i~~L~~ll~-----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~ 294 (389)
.+|+..|+..|. ..+......++.+|..+..+..+...+.. ...+..|...|.+..+.++..|+.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456667776664 12346677889999999887777777776 467899999998888899999999999
Q ss_pred HHhcChh--h-HHHhh----------ccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCH------HHHHHHHhcCcH
Q 016464 295 ILASHQE--G-KTAIG----------QAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA------EQLKIARELDAE 354 (389)
Q Consensus 295 ~l~~~~~--~-~~~i~----------~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~~ 354 (389)
.+|..+. + ...+. +..-+..++..+.+ .+.+.+..++..+-.+....+ ..+..+...|+.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9996653 2 33322 23457778888876 356666666665555555432 344556677877
Q ss_pred HHHHHHHHhCChHHHH
Q 016464 355 EALKELSESGTDRAKR 370 (389)
Q Consensus 355 ~~L~~ll~~~~~~~~~ 370 (389)
+.+..+-..+++.+..
T Consensus 268 ~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 268 QVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHTTSCCHHHHH
T ss_pred HHHHHHhcCCChhHHH
Confidence 7666644334555444
No 194
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.23 E-value=2 Score=35.45 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHh-hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCC-cHHHHHHH
Q 016464 201 MEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGI-VPPLMRFL 278 (389)
Q Consensus 201 ~~~~~~a~~~L~~Ls~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-i~~L~~ll 278 (389)
......++.+|..+..+......+.. .+.+..+...|.+.+..++..++..|..+|..++. .+ .+.+++.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~-------~G~~~~VL~Al 140 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP-------EDMNERVLEAM 140 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSS-------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC-------CChHHHHHHHH
Confidence 45677888999999877766665554 47889999999888999999999999988876531 12 34444444
Q ss_pred hhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCH------HHHHHHHhc
Q 016464 279 KDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA------EQLKIAREL 351 (389)
Q Consensus 279 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~ 351 (389)
.+ ... ..+..-+..+++.+.+ .+.+.+..++..+-.+....+ ..+..+...
T Consensus 141 ~~---------------~~~-------~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~ 198 (233)
T 2f31_A 141 TE---------------RAE-------MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL 198 (233)
T ss_dssp HH---------------HHH-------HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HH---------------HHH-------hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 32 110 0122345556666654 345556555555555555432 344566677
Q ss_pred CcHHHHHHHHHhCChHHHHHHHHHH
Q 016464 352 DAEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 352 ~~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
|+.+.+-.+-..+++.+.......-
T Consensus 199 Gl~~il~~l~~~~~~~L~~Qi~~fe 223 (233)
T 2f31_A 199 GLHQVLQELREIENEDMKVQLCVFD 223 (233)
T ss_dssp THHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCCHHHHHHHHHHH
Confidence 8777777666666777766554433
No 195
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.04 E-value=2 Score=38.38 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=105.4
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC-----------CChHHHHHHHHHHHhc
Q 016464 107 DALLGKLANGN-VEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNL 173 (389)
Q Consensus 107 ~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~-----------~~~~~~~~a~~~L~~l 173 (389)
...++.|.+.. .+.....+..|..-...+ ......|. .+|+..|+.+|.. .+......++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34455555442 222233445554332323 33344555 6778999988852 1346778888999888
Q ss_pred cccccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--h-hHHHHh----------hCcHHHHHHHhcc
Q 016464 174 SINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIGA----------AGAIPALIRLLCD 239 (389)
Q Consensus 174 ~~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~~~~----------~~~i~~L~~ll~~ 239 (389)
..+......+. ....+..|...|.+.++.++..++.+|..++..++ + ...+.+ ..-+..++..+.+
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 77766655555 57789999999999999999999999988886653 2 332221 2457778888876
Q ss_pred -CChhhHHHHHHHHHHhccCCCch---H----HHHhcCCcHHHHHHHhh
Q 016464 240 -GTPRGKKDAATAIFNLSIYQGNK---A----RAVRAGIVPPLMRFLKD 280 (389)
Q Consensus 240 -~~~~~~~~a~~~L~~L~~~~~~~---~----~~~~~~~i~~L~~ll~~ 280 (389)
.+.+.+..++..+-.+....++. . .+...| +..++.-|..
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~lr~ 275 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELRE 275 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-hHHHHHHHhc
Confidence 35566655555555565555432 2 233344 4445555665
No 196
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.78 E-value=1.7 Score=44.59 Aligned_cols=169 Identities=11% Similarity=0.065 Sum_probs=102.9
Q ss_pred CHHHHHHHhcC----CChHHHHHHHHHHHhccccccccchhcccCChHHHH----HHHccCCHHHHHHHHHHHHHhcCCc
Q 016464 147 AIPLLVELLSS----TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV----DVLKNGSMEARENAAATLFSLSVID 218 (389)
Q Consensus 147 ~v~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~----~lL~~~~~~~~~~a~~~L~~Ls~~~ 218 (389)
.+..+..++.+ .++.++..++-+++.|...--.....+....++.+. +.+..++.+-+..++.+|+|+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 45556666655 356677778878877753110000111222344444 445667777888899999998642
Q ss_pred hhhHHHHhhCcHHHHHHHhcc-------CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHH
Q 016464 219 ENKVAIGAAGAIPALIRLLCD-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEA 289 (389)
Q Consensus 219 ~~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a 289 (389)
..++.|..++.. ....++..|+++|.++....+. .+-+.+.++..+ .+.++|..|
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcCCCCChHHHHHH
Confidence 356677777642 1346778899999988743211 122456777754 567777777
Q ss_pred HHHHHHHhcChhhHHHhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcC
Q 016464 290 LAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 290 ~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 341 (389)
+.+|..-.-.. ..+..+...+.. .+.++.......|.+++...
T Consensus 535 ~~~Lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 535 CIVFFESKPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHTCCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 77765332211 245566666665 46788888888888887764
No 197
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.76 E-value=7 Score=40.82 Aligned_cols=255 Identities=10% Similarity=0.044 Sum_probs=137.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-----ChhhhHHHHhcCCHHHHHHHhcC---CChHHHHHHHHHHHhccccccccchhcc
Q 016464 114 ANGNVEEQRAAAGELRLLAKR-----NADNRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 114 ~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~g~v~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
.+.+..++.-|+..|.+.... +++.+..+. ...+..+...-.. .+..++...+.++..++..+-... =
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c
Confidence 355788999999999987643 223333332 2333333332111 357788888888888876532111 1
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-------chhhH-----HHHhh--CcHHHHHHHhcc------------
Q 016464 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVI-------DENKV-----AIGAA--GAIPALIRLLCD------------ 239 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-------~~~~~-----~~~~~--~~i~~L~~ll~~------------ 239 (389)
.+.++.|+.++++ ++.....++.+|..|+.. ...+. .+... .+++.+..++.+
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4678888988866 556677788888877532 01111 11111 233333344432
Q ss_pred -------CChhhHHHHHHHHHHhccCCCchHHHHhcC--CcHHHHHHHhhcCcccHHHHHHHHHHHhcCh---hhHHHhh
Q 016464 240 -------GTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDAGGGMVDEALAILAILASHQ---EGKTAIG 307 (389)
Q Consensus 240 -------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~i~ 307 (389)
.+..+...++.++.+...--. ...+.+.. .++.+..++. +++++..|+.+|..+.... ..+..++
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 122345556666665443211 12223332 5555554443 6789999999999998532 3334343
Q ss_pred cc---CChHHHHHHHhc--------CChHHHHHHHHHHHHHhhcCHHHHHHHHh----------cCcHHHHHHHHHhCCh
Q 016464 308 QA---EPIPVLMEVIRT--------GSPRNRENAAAVLWAICTGDAEQLKIARE----------LDAEEALKELSESGTD 366 (389)
Q Consensus 308 ~~---~~v~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------~~~~~~L~~ll~~~~~ 366 (389)
.. ..+..++..... .+.+..+..+.++..+.. .....+.+ .++++.++.+..+++.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCccH
Confidence 31 123345555421 123445555666666553 12211111 1457777777777777
Q ss_pred HHHHHHHHHHHHH
Q 016464 367 RAKRKAGSILELL 379 (389)
Q Consensus 367 ~~~~~a~~~L~~l 379 (389)
.+...+..+-..+
T Consensus 366 ~vs~~~l~fW~~l 378 (1204)
T 3a6p_A 366 FLRSSTQMTWGAL 378 (1204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 7777666554434
No 198
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.58 E-value=0.65 Score=38.04 Aligned_cols=143 Identities=15% Similarity=0.077 Sum_probs=92.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHH-HhcCCChHHHHHHHHHHHhccc-cccccchh
Q 016464 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVTALLNLSI-NDSNKGTI 183 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~-lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i 183 (389)
++....+.+++..++|..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. ...
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----- 137 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----- 137 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----
Confidence 33334444555678899999977776 211 124566666 4456788999999999988764 111
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch-
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK- 262 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~- 262 (389)
...++.+.....+++..++..|...+.--+.....+ ..-.-+++.|-.+..+++.-++...++.|..++...+..
T Consensus 138 --e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 138 --KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 126788899999999999998887764322111000 000124555556666778889999999999999866543
Q ss_pred HHHHh
Q 016464 263 ARAVR 267 (389)
Q Consensus 263 ~~~~~ 267 (389)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33443
No 199
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.52 E-value=1.3 Score=45.51 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=57.4
Q ss_pred CChhhHHHHHHHHHHhccCCCch-HHHHhcCCcHHHHHHHhh-----cCcccHHHHHHHHHHHhcChhhHHHhhccCChH
Q 016464 240 GTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIP 313 (389)
Q Consensus 240 ~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~ 313 (389)
.+...++.++.+++.++..-... ..-.-..+++.+..+... +.+.++..++.+++..+..-........ .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 45678889999999887542211 111112233333333221 1222333456666665543222122222 2567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 314 VLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
.++..+.+.++.++..|+.++.+++..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 777778777899999999999999984
No 200
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.37 E-value=0.83 Score=47.00 Aligned_cols=217 Identities=16% Similarity=0.112 Sum_probs=126.8
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccc----
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND---- 177 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~---- 177 (389)
-..+..+++.+.+++.+.+.+|-..|..+-. ++ ++...+..+|.+ .+..+|..|+..|.+.....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 3456666666667777788888888887764 33 344555666643 47889999999999865421
Q ss_pred --cccchhcccCChHHHHHHHccC---------CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHH
Q 016464 178 --SNKGTIVNAGAIPDIVDVLKNG---------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKK 246 (389)
Q Consensus 178 --~~~~~i~~~g~l~~L~~lL~~~---------~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 246 (389)
+.+..+ -..++..+.+. +..++...+.++..++..+-.. ...+.++.|+..+. .+...+.
T Consensus 85 ~~~~~~~i-----r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~ 155 (1049)
T 3m1i_C 85 PNDHRIGI-----RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCE 155 (1049)
T ss_dssp CHHHHHHH-----HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHH
T ss_pred CHHHHHHH-----HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHH
Confidence 112222 22344444321 3567777777777776432110 12467888888886 4555566
Q ss_pred HHHHHHHHhccC-----CC----ch-----HHHHhc--CCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhhcc
Q 016464 247 DAATAIFNLSIY-----QG----NK-----ARAVRA--GIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQA 309 (389)
Q Consensus 247 ~a~~~L~~L~~~-----~~----~~-----~~~~~~--~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 309 (389)
.++.+|..++.. .+ .+ ..+... .++..+..++.+ .+..++..++.++......-+. ..+.+.
T Consensus 156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~ 234 (1049)
T 3m1i_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYET 234 (1049)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSS
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhh
Confidence 777777776631 11 11 112221 223334444544 3456788888888877654332 223445
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016464 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
..+..+.+.+. .++.++..|+.+|..+...
T Consensus 235 ~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 235 NILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp SHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 55666653322 2678888888888887754
No 201
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.90 E-value=1.6 Score=39.14 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh--h-HHHhh----------
Q 016464 242 PRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE--G-KTAIG---------- 307 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~-~~~i~---------- 307 (389)
......++.+|..+..+..+...+.. .+++..+...|.+..+.++..++.+|..+|..+. + ...+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888999999887777777666 4678888888888888889999999999986543 4 33222
Q ss_pred ccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcCH------HHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Q 016464 308 QAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDA------EQLKIARELDAEEALKELSESGTDRAKRKA 372 (389)
Q Consensus 308 ~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 372 (389)
+..-+..++..+.++ +.+.+..++..+-.+....+ ..+..+...|+.+.+-.+-...++.+....
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 233566788877643 45566666655555555432 345566677877776655554566655543
No 202
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.78 E-value=0.18 Score=33.62 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=36.0
Q ss_pred CCCcCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..-.|.||.+-.- +|.+ -.|+...||.|++-=.++++..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999998642 2322 2588899999998878888999999987653
No 203
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.22 E-value=2.9 Score=35.63 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=98.4
Q ss_pred ChHHHHHHHccC------CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh--ccCChhhHHHHHHHHHHhccCC
Q 016464 188 AIPDIVDVLKNG------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL--CDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 188 ~l~~L~~lL~~~------~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
.+..+..+++++ +.+....|+..|..+|.+-..-..|.... ...|-.++ ...++.+++.++++|+.-.+++
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 355667777776 44567889999999998877777776543 33444443 3446778999999999877776
Q ss_pred CchHH-HHh--cCCcHHHHHHHhh-------cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChHHH
Q 016464 260 GNKAR-AVR--AGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNR 327 (389)
Q Consensus 260 ~~~~~-~~~--~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~ 327 (389)
+.... +.+ ...+..+..-|.. ....++..-+.+|..|..++. .+ ...++..|.+++... ++.++
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence 65433 333 3556666555543 233456677888888887762 12 244778888888777 88999
Q ss_pred HHHHHHHHHHh
Q 016464 328 ENAAAVLWAIC 338 (389)
Q Consensus 328 ~~a~~~L~~l~ 338 (389)
..++.++..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99988887765
No 204
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.19 E-value=4.4 Score=35.28 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=94.3
Q ss_pred HHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc-CChHHHH
Q 016464 250 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRE 328 (389)
Q Consensus 250 ~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~~~~~~~ 328 (389)
..|.-|..+++....+++.+++..+...+..++.++.....+.|...+........-. .+.++-++..+.- +++++..
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEE
Confidence 3333344444455779999999999999999999999999999998886544322211 3467888888764 5788999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-------ChHHHHHHHHHHHH
Q 016464 329 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-------TDRAKRKAGSILEL 378 (389)
Q Consensus 329 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~~~~~a~~~L~~ 378 (389)
...+.|+|...+.....+.....|++..|...+... +..-|..|..++.+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 999999999999877888888999999998876421 33445556666554
No 205
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.17 E-value=1.6 Score=39.12 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHh-hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC--c-hHHHH----------
Q 016464 201 MEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG--N-KARAV---------- 266 (389)
Q Consensus 201 ~~~~~~a~~~L~~Ls~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~--~-~~~~~---------- 266 (389)
......++.+|..+..+......+.. .+++..+...+.+.++.++..++..|..+|..++ + ...+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 56677888999998877765555544 4789999999988889999999999988887654 4 33332
Q ss_pred hcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhh-------HHHhhccCChHHHHHHHhc-CChH
Q 016464 267 RAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEPIPVLMEVIRT-GSPR 325 (389)
Q Consensus 267 ~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~~~v~~L~~ll~~-~~~~ 325 (389)
+..-...+++.+.+ .+.+.+..++..+..+...++. |.++... ++..++..++. .++.
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~-GL~~il~~Lr~~~~~~ 218 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GLHQVLQELREIENED 218 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-THHHHHHHHTTCCCHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-ChHHHHHHHhccCChh
Confidence 22346677877764 3445566666666666655443 4444445 55555555554 3443
No 206
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.77 E-value=0.22 Score=33.63 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=37.1
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
.-..+.|..|....+.= +....|-+|..|+...+..+ ..||.|+.++...
T Consensus 25 ~~G~~nCKsCWf~~k~L-V~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGL-VECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSSE-EECSSCEEEHHHHHHTCSSS-SEETTTTEECCCC
T ss_pred ccCcccChhhccccCCe-eeecchhhHHHHHHHHHhhc-cCCcccCCcCCcc
Confidence 44457899998877752 23456999999999888754 4599999988543
No 207
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.55 E-value=7.4 Score=40.65 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc--CCChHHHHHHHHHHHhccccc------cccchhcccCC
Q 016464 117 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS--STDPRTQEHAVTALLNLSIND------SNKGTIVNAGA 188 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~g~ 188 (389)
+.+.+.+|-..|..+-... .+...+...|. +.+..+|..|+..|.+..... +.+..+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I----- 90 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL----- 90 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----
Confidence 6778888988888876532 23344444443 447889999999998865321 112222
Q ss_pred hHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC---
Q 016464 189 IPDIVDVLKN-------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--- 258 (389)
Q Consensus 189 l~~L~~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~--- 258 (389)
=..++..+.+ ....++...+.++..++..+-.. ...+.++.++.++.+ +......++.+|..|+..
T Consensus 91 r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 91 KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 1234444432 35778888888888776432110 124778888888866 455577788888877642
Q ss_pred CC----chHH-----HHhc--CCcHHHHHHHhh-------------------cCcccHHHHHHHHHHHhcChhhHHHhhc
Q 016464 259 QG----NKAR-----AVRA--GIVPPLMRFLKD-------------------AGGGMVDEALAILAILASHQEGKTAIGQ 308 (389)
Q Consensus 259 ~~----~~~~-----~~~~--~~i~~L~~ll~~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 308 (389)
.+ .+.. +.+. .++..+..++.+ .+..+...++.++.+.....+. ..+.+
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~ 245 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITA 245 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHh
Confidence 11 1111 1111 222333333332 1123445556666554443222 12222
Q ss_pred cC--ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC--HHHHHHHHhc---CcHHHHHHHHH--------hCChHHHHHHH
Q 016464 309 AE--PIPVLMEVIRTGSPRNRENAAAVLWAICTGD--AEQLKIAREL---DAEEALKELSE--------SGTDRAKRKAG 373 (389)
Q Consensus 309 ~~--~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~---~~~~~L~~ll~--------~~~~~~~~~a~ 373 (389)
.. .+..+..++. +++++..|+.+|..+.... ++....+... ..+..++.... +.+.+..++..
T Consensus 246 ~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 246 ENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp TTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 22 4555554443 5778999999999998754 3332222221 11233444432 11345666666
Q ss_pred HHHHHHH
Q 016464 374 SILELLQ 380 (389)
Q Consensus 374 ~~L~~l~ 380 (389)
+++..+.
T Consensus 324 ~ll~~lg 330 (1204)
T 3a6p_A 324 QVLCALG 330 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 208
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.41 E-value=2.4 Score=43.38 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=131.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccc---
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND--- 177 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~--- 177 (389)
+-..+..++..+.+++.+.+.+|-..|..+-. +++ +...+..+|.. .++.+|..|+.+|.+.....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45678888888888888888888888877654 333 33444455544 47889999999998865421
Q ss_pred --cccchhcccCChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHH
Q 016464 178 --SNKGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 178 --~~~~~i~~~g~l~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 250 (389)
+..........+..+...-.+ .++.++...+.++..+...+-.. ...+.++.++.++.. ++......+.
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 111111222334444443322 23556666777777665321100 124677777777754 3445566777
Q ss_pred HHHHhccC--C-------Cch-----HHHHhcCCcHHHHHHH----hh-cCcccHHHHHHHHHHHhcChhhHHHhhccCC
Q 016464 251 AIFNLSIY--Q-------GNK-----ARAVRAGIVPPLMRFL----KD-AGGGMVDEALAILAILASHQEGKTAIGQAEP 311 (389)
Q Consensus 251 ~L~~L~~~--~-------~~~-----~~~~~~~~i~~L~~ll----~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 311 (389)
+|..|... + ..+ ..+.. -++.++.++ .. .++++...++.+|......-+. ..+++.+.
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~l 248 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchH
Confidence 77776543 0 011 11222 245555544 33 4566777888999988877543 34566667
Q ss_pred hHHHH-HHHhcCChHHHHHHHHHHHHHhhc
Q 016464 312 IPVLM-EVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 312 v~~L~-~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
+..|+ .++ .++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 77663 444 5678999999999998764
No 209
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.00 E-value=1.2 Score=33.33 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=58.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+.|.+.++.++..|+.+|-.+..+. +.....+.+..++..|..++...++.|+.++..++..-..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999998888764 5556677777888889888888899999999999887654
No 210
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.61 E-value=1.4 Score=33.97 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=58.7
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+.|.+.++.++..|+.+|-.+..+. ......+.+..++..|+.++.. .++.|++++..++..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999988874 5667778888899999998876 478999999988877654
No 211
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.33 E-value=1.6 Score=33.69 Aligned_cols=73 Identities=8% Similarity=0.081 Sum_probs=58.9
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~ 174 (389)
..+++..+.+.|++.++.++..|+..|-.+.... ......+....++..|++++.. .++.+++.++..|..-+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999864 4456566667788888888875 57889988888776644
No 212
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.80 E-value=1.9 Score=32.64 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=59.9
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC------CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~------~~~~~~~~a~~~L~~l~ 174 (389)
...++..+.+.|++.++.++..|+..|-.+.... ......+....++..|++++.. .+..++..++..+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999874 4556677777889999999874 36789998888887654
No 213
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.55 E-value=9.8 Score=32.41 Aligned_cols=107 Identities=10% Similarity=0.046 Sum_probs=74.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc--CCHHHHHHHhcC-------CChHHHHHHHHHHHhcc
Q 016464 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSS-------TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~v~~L~~lL~~-------~~~~~~~~a~~~L~~l~ 174 (389)
..+..|+ +..+.++.+++.|.++|..-.+.+|...+.+.+. ..+..+..-|.. ....++..-+.+|..|.
T Consensus 71 ~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~ 149 (315)
T 3qml_C 71 ALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELP 149 (315)
T ss_dssp HHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Confidence 3444444 3345567899999999999999999988877765 455555544433 23466777888888888
Q ss_pred ccccccchhcccCChHHHHHHHccC--CHHHHHHHHHHHHHhc
Q 016464 175 INDSNKGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLS 215 (389)
Q Consensus 175 ~~~~~~~~i~~~g~l~~L~~lL~~~--~~~~~~~a~~~L~~Ls 215 (389)
.++ ..+ ...++..|.+++..+ ++.++..++..+..+-
T Consensus 150 ~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 150 VTS---EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp CCS---TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCh---Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 776 222 244678888888777 8888888888877654
No 214
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.34 E-value=2.2 Score=31.89 Aligned_cols=73 Identities=7% Similarity=0.119 Sum_probs=58.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~ 174 (389)
..+++..+.+.|++.++.++..|+..|-.+...... ....+....++..|++++...++.++..++..+..-+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999998876533 3445556677788888887778899999988887654
No 215
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.25 E-value=2 Score=33.36 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC------CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~------~~~~~~~~a~~~L~~l~ 174 (389)
...++..+.+.|++.++.++..|+..|-.+.... ......+....++..|++++.. .+..+++.++..|..-+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999875 3456677777889999999863 36788999888887654
No 216
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.87 E-value=2.5 Score=31.99 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=59.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh------CChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-+.+.++.++..|+.+|-.+..+. ......+.+..++.-|+.++.. .++.|+.++..++..-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5678888889899999999999999988864 5566778888899999999863 478999999999887754
No 217
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.77 E-value=1.8 Score=33.73 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=58.7
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh------CChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+.|.+.++.++..|+.+|-.+..+. ......+.+..++.-|+.++.. .+..|++++..++..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999998875 4566678888899999998862 368999999998887654
No 218
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.38 E-value=1.7 Score=32.92 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=58.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHh------CChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-|.+.++.++..|+.+|-.+..+ +......+.+..++.-|+.++.. .+..|+.++..++..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999998887 46677788888899999988864 368999999888877654
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.08 E-value=2.5 Score=34.65 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-|.+.++.++..|+.+|-.+..+ ......++.+..++..|..++... ++.|++++..++.....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 567788888889999999999999988886 355677777888888888888764 68899999999887764
No 220
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=84.69 E-value=0.18 Score=27.24 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=12.6
Q ss_pred CCCcCcCCcccCcCCe
Q 016464 10 DDFRCPISLELMKDPV 25 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv 25 (389)
+.|.||+|+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3589999998888764
No 221
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.36 E-value=1.4 Score=28.60 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=32.9
Q ss_pred CCCCCcCcCCcccCcCCeecC----CccCccHHHHHHHHhc----CCCCCCC
Q 016464 8 IPDDFRCPISLELMKDPVIVS----TGQTYERSCIQKWLDA----GHKTCPK 51 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~----c~h~~c~~ci~~~~~~----~~~~cp~ 51 (389)
-...+.|.+|++-+.|.-+.. ..|.||-.|-..+.+. ....||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 345689999999999876543 3699999999888874 2334666
No 222
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.37 E-value=43 Score=34.37 Aligned_cols=214 Identities=11% Similarity=0.066 Sum_probs=123.6
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-----chh
Q 016464 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVI-----DEN 220 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~-----~~~ 220 (389)
.+..++..+-+++.+.|..|-..|..+-.+++ +...+..+|. +.++.++..|+.+|.+.... ++.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 34555555556677778888888877655433 3333344443 34789999999999887542 222
Q ss_pred hHHHHhhCcHHHHHHHhcc-----CChhhHHHHHHHHHHhccCC--CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHH
Q 016464 221 KVAIGAAGAIPALIRLLCD-----GTPRGKKDAATAIFNLSIYQ--GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 293 (389)
Q Consensus 221 ~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 293 (389)
...-.+...+..+...-.+ .++.++...+.++..++... +.. .+.++.++..+.. ++...+..+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 2222233444444444322 23455666777777776431 111 3456666666653 344566677777
Q ss_pred HHHhcC--h--h-----h-----HHHhhccCChHHHHH----HHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcH
Q 016464 294 AILASH--Q--E-----G-----KTAIGQAEPIPVLME----VIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAE 354 (389)
Q Consensus 294 ~~l~~~--~--~-----~-----~~~i~~~~~v~~L~~----ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 354 (389)
..|... . . . +..+.+ -++.++. ++.. .++.+...++.+|..+..--+ ...+.+.+.+
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll 249 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHH
Confidence 777642 0 0 1 122222 1344444 4433 457777778888888766432 2346677777
Q ss_pred HHHH-HHHHhCChHHHHHHHHHHHHHHh
Q 016464 355 EALK-ELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 355 ~~L~-~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+.|. .++ ++++++..|..+|..+..
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 7774 444 468899999999988865
No 223
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=82.70 E-value=0.27 Score=31.95 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=31.0
Q ss_pred CcCcCCcccCcCCe----ecCCcc----CccHHHHHHHHhcCCCCCCCCCccCcCCCCCcc
Q 016464 12 FRCPISLELMKDPV----IVSTGQ----TYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 64 (389)
Q Consensus 12 ~~Cpic~~~~~~pv----~~~c~h----~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n 64 (389)
-.||+|+..+..-- .+.-+. --.|.-.-..+.+..+.||.|+..+.-..+..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 47999998876321 121111 113443444444456789999998876666443
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.62 E-value=4.2 Score=33.10 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-|.+.++.++..|+.+|-.+..+. .....++.+..++..|..++.+. +..|+.++..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5667778888899999999999999998875 44556777778888888888765 68899999888887664
No 225
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.30 E-value=6.2 Score=29.79 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=58.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hhHHHHhcCCHHHHHHHhcC------CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~lL~~------~~~~~~~~a~~~L~~l~ 174 (389)
...++..+.+.|++.++.++..|+..|-.+...... ....+....++..|++++.. .+..++..++..+..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999876543 35566666788889999863 46788999888887654
No 226
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=82.26 E-value=1.3 Score=37.10 Aligned_cols=130 Identities=8% Similarity=0.033 Sum_probs=75.4
Q ss_pred cCChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhh--------cCcccHHHHHHHHHHHhcChhh-HHHhhc
Q 016464 239 DGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 308 (389)
Q Consensus 239 ~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~-~~~i~~ 308 (389)
+.++..+..+++++.|+-.++. ++..+........+++.+.+ .+..++..+..++.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 3456788889999999998888 56555443333444444322 2456777888899999853221 11 1
Q ss_pred cCChHHHHHHHhc---------CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH-h-CChHHHHHHHH
Q 016464 309 AEPIPVLMEVIRT---------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-S-GTDRAKRKAGS 374 (389)
Q Consensus 309 ~~~v~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~-~~~~~~~~a~~ 374 (389)
......++..+.. .+++....++.+|++|...++...+... ....+-...+ . ..++++.-+.+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~---~~~~~~~~~~~~~~e~R~~~v~~e 251 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN---SVTWLANIKRSYGNVPRFKDIFDD 251 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTT---TCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhc---cHHHHHHHHHHcccchHHHHHHHh
Confidence 2244556666652 3667788888899998875543322111 2233333321 1 35677666554
No 227
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.85 E-value=32 Score=30.50 Aligned_cols=129 Identities=9% Similarity=0.052 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc
Q 016464 119 EEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK 197 (389)
Q Consensus 119 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~ 197 (389)
+.+...+..+..+..+. +. .=..+++.++++-.+.+.++|...+..|...+.. +..+. ...++.|..+|.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~el~-~~~l~~L~~LL~ 110 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIELL-LKLIANLNMLLR 110 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGGH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHc
Confidence 56888888888876532 32 2246789999998888999999999999876642 11112 346788889998
Q ss_pred cCCHHHHHHHHHHHHHh--------cCCch---hhHHHHhh--CcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016464 198 NGSMEARENAAATLFSL--------SVIDE---NKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 198 ~~~~~~~~~a~~~L~~L--------s~~~~---~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+.++.+.+.++.+..++ +.++. .....++. .+-..++.++.+.+..++..++..+-.+.
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88888887777655554 11111 11222221 34456667777888899999988776643
No 228
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.73 E-value=14 Score=30.10 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~ 174 (389)
..+++..|.+.|++.++.++..|+..|-.+...... ....+....++..|.+++.. .+..+++.++.+|...+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998875433 45566666777788888755 46788888888887654
No 229
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=79.03 E-value=7.3 Score=32.41 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=75.5
Q ss_pred HHHHHHHHHhccccccccchhcccCChHHHH-HHHccCCHHHHHHHHHHHHHhcCCch-hhHHHHhhCcHHHHHHHhcc-
Q 016464 163 QEHAVTALLNLSINDSNKGTIVNAGAIPDIV-DVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCD- 239 (389)
Q Consensus 163 ~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~-~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~~~i~~L~~ll~~- 239 (389)
+-.++.++.-+..++..-. .+..++ ..+.+..+..+-.+++++.|+-.++. .+..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~~------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchHH------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 3445666655555444322 233322 22334567788899999999988887 56555544334455554422
Q ss_pred -------CChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhh---------cCcccHHHHHHHHHHHhcChh
Q 016464 240 -------GTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 240 -------~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~ 301 (389)
.+..++..++.++.|++.... .+. +......+++++.. .+++....++-+|+++...+.
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 245677788888999875211 010 12233455555542 356777788888888885433
No 230
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.44 E-value=5.9 Score=32.20 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~ 174 (389)
..+++..+.+.|++.++.++..|+..|-.+..... .....+.....+..|++++.. .+..+++.++..+..-+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 35688899999999999999999999999988653 355666666788888888864 36788888887776644
No 231
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=76.51 E-value=14 Score=33.23 Aligned_cols=130 Identities=7% Similarity=0.050 Sum_probs=78.2
Q ss_pred cCChhhHHHHHHHHHHhccCCCchHHHHhc-CCcHHHHHHHhh--------cCcccHHHHHHHHHHHhcChhh-HHHhhc
Q 016464 239 DGTPRGKKDAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 308 (389)
Q Consensus 239 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~-~~~i~~ 308 (389)
+..+..+..+++++.|+-.++.....++.. .....+++.+.. .+..++..+..++.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 446778888999999999888744444432 234455555432 2445777788888999864221 11 1
Q ss_pred cCChHHHHHHHh---------cCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH--hCChHHHHHHHH
Q 016464 309 AEPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE--SGTDRAKRKAGS 374 (389)
Q Consensus 309 ~~~v~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~a~~ 374 (389)
...+..+...+. ..+.+....++.+|++|...++........ +..+-.... ...++++.-+.+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~e 423 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDD 423 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTT---CHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHh
Confidence 234456666665 247788889999999999766544443332 233333322 135666665544
No 232
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=76.28 E-value=0.68 Score=23.68 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=12.8
Q ss_pred CCCCcCcCCcccCcCCee
Q 016464 9 PDDFRCPISLELMKDPVI 26 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~ 26 (389)
+..+.||+|+..+-|+-+
T Consensus 1 ~~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCCEECTTSSCEESSHHH
T ss_pred CCcccCccccccCcChHH
Confidence 356788888887777644
No 233
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=75.59 E-value=6 Score=26.15 Aligned_cols=37 Identities=8% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCCCCCCCcCcCCcccCcCCee--cCCccCccHHHHHHH
Q 016464 5 SPVIPDDFRCPISLELMKDPVI--VSTGQTYERSCIQKW 41 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~--~~c~h~~c~~ci~~~ 41 (389)
.+.++.+-.|+||...-.+-.. -.|+..|...|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 4567888999999977655433 238999999999986
No 234
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=74.22 E-value=13 Score=28.21 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=56.2
Q ss_pred chhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHH-HHHHhcC---CChHHHHHHHHHHHhcc
Q 016464 102 DRAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~-L~~lL~~---~~~~~~~~a~~~L~~l~ 174 (389)
..+++..+.+.|+ +.++.++..|+..|-.+.... ......+.....+.. |++++.. .+..+++.++..+..-+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3568889999998 478999999999999999875 455666777778887 7888843 24578888888776644
No 235
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=73.67 E-value=1.3 Score=30.16 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.5
Q ss_pred CccHHHHHHHHhc
Q 016464 32 TYERSCIQKWLDA 44 (389)
Q Consensus 32 ~~c~~ci~~~~~~ 44 (389)
-|||.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 236
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.52 E-value=0.11 Score=35.25 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=26.9
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..||.|++.|.. .-++.+|..|-..+.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 799999998863 1234447777554332 246999998875
No 237
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.44 E-value=38 Score=28.10 Aligned_cols=143 Identities=7% Similarity=0.019 Sum_probs=91.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016464 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
.+-.++...+....+.+...+.....+..+. +..- ..+++.++.+..+.+.++|...+..|...+... ..
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~- 86 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VE- 86 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GG-
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HH-
Confidence 3334444444433468888888888877643 2221 245677778777778999999999998876321 11
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHh--------cCCch---hhHHHHhh--CcHHHHHHHhccCChhhHHHHHH
Q 016464 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSL--------SVIDE---NKVAIGAA--GAIPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L--------s~~~~---~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~ 250 (389)
.-...++.|..+|+++++.+.+.+..+..++ +.++. .....++. ..=..++.++.+.+..++..++.
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 2234688889999988888887777655543 33322 12223222 44456667777778888888887
Q ss_pred HHHHhc
Q 016464 251 AIFNLS 256 (389)
Q Consensus 251 ~L~~L~ 256 (389)
.+-.+.
T Consensus 167 F~e~vI 172 (257)
T 3gs3_A 167 FLEGVV 172 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 238
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=73.44 E-value=1.3 Score=30.06 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=11.5
Q ss_pred CccHHHHHHHHhc
Q 016464 32 TYERSCIQKWLDA 44 (389)
Q Consensus 32 ~~c~~ci~~~~~~ 44 (389)
.|||.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 239
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.26 E-value=11 Score=28.69 Aligned_cols=71 Identities=11% Similarity=-0.027 Sum_probs=55.4
Q ss_pred ChHHHHHHHh-cCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHH-HHHHHHh---CChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIR-TGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEA-LKELSES---GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~-L~~ll~~---~~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+.|+ +.++.++..|+.+|-.+..+. +.....+.+..++.- |+.++.. ....|++++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5677888887 478899999999999988874 666777888888887 7888743 245899998888887665
No 240
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=72.51 E-value=0.89 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.8
Q ss_pred CcCcCCcccCc
Q 016464 12 FRCPISLELMK 22 (389)
Q Consensus 12 ~~Cpic~~~~~ 22 (389)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 57999998774
No 241
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=71.17 E-value=11 Score=33.19 Aligned_cols=131 Identities=7% Similarity=0.044 Sum_probs=76.0
Q ss_pred cCChhhHHHHHHHHHHhccCCCchHHHHhc-CCcHHHHHHHh--------hcCcccHHHHHHHHHHHhcChhhHHHhhcc
Q 016464 239 DGTPRGKKDAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLK--------DAGGGMVDEALAILAILASHQEGKTAIGQA 309 (389)
Q Consensus 239 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 309 (389)
+..+..+..+++++.|+-.+......++.. .....+++.+. ..+..++..+..++.|++..-.... .+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--~~~ 287 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SDL 287 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC--SCT
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc--chH
Confidence 445778888999999999888744444432 12233444432 1245677778888899986422100 012
Q ss_pred CChHHHHHHHh---------cCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH--hCChHHHHHHHH
Q 016464 310 EPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE--SGTDRAKRKAGS 374 (389)
Q Consensus 310 ~~v~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~a~~ 374 (389)
..+..+...+. ..+++....++.+|++|...++...+.... +..+-.... ...++++.-+.+
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~e 360 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDD 360 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGG---CHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHh
Confidence 34456666666 247788889999999999766544432222 233333322 135666655443
No 242
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.55 E-value=2.8 Score=30.41 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=36.4
Q ss_pred CcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016464 12 FRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 12 ~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
|.|..|...|.+ .....=|..||+.|..+.+.. ...|..|..++....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 889999999964 334456788999999887752 2269999988875433
No 243
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=70.31 E-value=43 Score=29.73 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=72.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcc--------
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS-------- 174 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~-------- 174 (389)
.++++.++++-..++.+++...+..|...+....+.. ...++.|..+|.++++.+.+.++.+..++-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999888899999999999999887544432 235688888998888888888887776652
Q ss_pred cccc-------ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016464 175 INDS-------NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 175 ~~~~-------~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
.++. ....+. .+-..++.++.+++..++..|+.++-.+
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 1111 111111 1233455666777788887777766654
No 244
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=69.50 E-value=1.5 Score=25.54 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=11.1
Q ss_pred CCCCCCcCcCCcc
Q 016464 7 VIPDDFRCPISLE 19 (389)
Q Consensus 7 ~~~~~~~Cpic~~ 19 (389)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5889999999985
No 245
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=69.50 E-value=8.6 Score=28.59 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=51.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcC-cHHHHHHHHHh-----C---ChHHHHHHHHHHHHHH
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELD-AEEALKELSES-----G---TDRAKRKAGSILELLQ 380 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~-~~~~L~~ll~~-----~---~~~~~~~a~~~L~~l~ 380 (389)
++..|.+-|.+.++.++.+|+.+|-.|+... +..+..+.+.- .|..+..+--. + ...||.+|.+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999999754 55565555543 22222222111 1 1579999999999987
Q ss_pred hhHh
Q 016464 381 RIDM 384 (389)
Q Consensus 381 ~~~~ 384 (389)
....
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6543
No 246
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=68.52 E-value=2.2 Score=25.58 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.8
Q ss_pred CCCCCCCcCcCCcc
Q 016464 6 PVIPDDFRCPISLE 19 (389)
Q Consensus 6 ~~~~~~~~Cpic~~ 19 (389)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 45899999999985
No 247
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=65.68 E-value=57 Score=27.04 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=68.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhc--------c
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL--------S 174 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l--------~ 174 (389)
..+++.++.+-...+.+++...+..|...+....+.. ...++.|..+++++++.+.+.++.+..++ +
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888887777889999999999998886554432 23568888899888899988888777665 2
Q ss_pred cccccc---chhcc--cCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016464 175 INDSNK---GTIVN--AGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 175 ~~~~~~---~~i~~--~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
.++... ....+ ...=..++.++++++..++..++..+-.+
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 222110 11110 11223345555566666666666655543
No 248
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=65.34 E-value=2 Score=25.99 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=11.8
Q ss_pred CCCCCCcCcCCccc
Q 016464 7 VIPDDFRCPISLEL 20 (389)
Q Consensus 7 ~~~~~~~Cpic~~~ 20 (389)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 68999999999853
No 249
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=65.09 E-value=17 Score=28.75 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=73.9
Q ss_pred CcHHHHHHHhcc------CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh---cCcccHHHHHHHHHHHhc
Q 016464 228 GAIPALIRLLCD------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD---AGGGMVDEALAILAILAS 298 (389)
Q Consensus 228 ~~i~~L~~ll~~------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~ 298 (389)
..+|.+++.+.+ .+.......+.....|..++.-.-...-+..+|.++.++-. ....+++.|..+|..++.
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 355666666543 25556666777777777777654444445577888877754 222699999999999985
Q ss_pred ChhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh
Q 016464 299 HQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 363 (389)
Q Consensus 299 ~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 363 (389)
.-.....-....+...+.+.+.+. +.....-|+..|..+.. +. ++.-++|.|-.+.+.
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~~----vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---NV----VNTVIREHAEEYKRT 179 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---HH----HHTHHHHHHHHHHHH
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---HH----HHHhhhcCHHHHHHH
Confidence 322111111222455666666543 35555666666665543 22 233345666555544
No 250
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=64.39 E-value=5.6 Score=28.87 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCcCcCCcccCcC-CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 11 DFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 11 ~~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
-|.|..|...+.+ +....=|..||+.|..+.+ ...|+.|+.++..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 3899999998876 3345568889999987754 3569999998874
No 251
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.95 E-value=3.3 Score=27.43 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.9
Q ss_pred CCCCCCCcCcCCcc
Q 016464 6 PVIPDDFRCPISLE 19 (389)
Q Consensus 6 ~~~~~~~~Cpic~~ 19 (389)
.++|+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999986
No 252
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=61.49 E-value=2.6 Score=25.28 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=11.4
Q ss_pred CCCCCCcCcCCcc
Q 016464 7 VIPDDFRCPISLE 19 (389)
Q Consensus 7 ~~~~~~~Cpic~~ 19 (389)
++|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999985
No 253
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=60.76 E-value=2.7 Score=25.56 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.1
Q ss_pred CCCCCCcCcCCcc
Q 016464 7 VIPDDFRCPISLE 19 (389)
Q Consensus 7 ~~~~~~~Cpic~~ 19 (389)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5889999999985
No 254
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.53 E-value=0.44 Score=31.55 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=23.7
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..||.|...|..- -++.+|..|=..+-.. . .||.|++++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~-a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQ-A-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEE-E-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCc-c-cCcchhhHHH
Confidence 6899999887521 1233455554332222 2 5888888774
No 255
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=58.43 E-value=11 Score=23.80 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCCCCcCcCCcccCcCCeec--CCccCccHHHHHHHHhc---CCCCCCCCCcc
Q 016464 8 IPDDFRCPISLELMKDPVIV--STGQTYERSCIQKWLDA---GHKTCPKTQQT 55 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~--~c~h~~c~~ci~~~~~~---~~~~cp~c~~~ 55 (389)
....-.|.+|++- .-+++ .|...|...|+...+.. +...||.|...
T Consensus 9 ~~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3445679999863 22332 48888999999777653 55689999754
No 256
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.34 E-value=16 Score=32.89 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHHhccccccccc-hhcccCChHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCchh-hHHHHh
Q 016464 157 STDPRTQEHAVTALLNLSINDSNKG-TIVNAGAIPDIVDVLKN--------GSMEARENAAATLFSLSVIDEN-KVAIGA 226 (389)
Q Consensus 157 ~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~g~l~~L~~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~-~~~~~~ 226 (389)
...+..+-.+++++.|+..++.... .+........+++.+.. .+..++..++.++.|++...-. +. .
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 3467788899999999988887544 44333334556665531 2456888888999998753210 00 1
Q ss_pred hCcHHHHHHHhc---------cCChhhHHHHHHHHHHhccCCC
Q 016464 227 AGAIPALIRLLC---------DGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 227 ~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
......+...+. ..+.+....++.+|++|...++
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 233445555554 2477888999999999986443
No 257
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.75 E-value=3.6 Score=26.43 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.1
Q ss_pred CCCCCCCcCcCCccc
Q 016464 6 PVIPDDFRCPISLEL 20 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~ 20 (389)
.++|+++.||+|..-
T Consensus 35 ~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 35 VDLSDSFMCPACRSP 49 (70)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCCCCCCC
Confidence 358999999999863
No 258
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=55.13 E-value=8.1 Score=28.20 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCCcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 10 DDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 10 ~~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
+-|.|..|...|.+ +....=|..||..|..+.+.. ...|+.|+.++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 45899999998853 445566888999999887642 1269999988754
No 259
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=54.64 E-value=64 Score=24.03 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=55.2
Q ss_pred HhccCCCchHHHHhcCCcHHHHHHHhh------cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChH
Q 016464 254 NLSIYQGNKARAVRAGIVPPLMRFLKD------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPR 325 (389)
Q Consensus 254 ~L~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~ 325 (389)
.......-+..+++.|++..+-..|.- +...+++..+.+|.++- -.++.+.+.|.-..++.+-.+. ++.
T Consensus 46 ~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~ 122 (145)
T 2xpp_A 46 DILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKE 122 (145)
T ss_dssp HHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHH
T ss_pred HHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHH
Confidence 333444556788999999999999865 44567888888888874 3356666665555555444443 467
Q ss_pred HHHHHHHHHHHHh
Q 016464 326 NRENAAAVLWAIC 338 (389)
Q Consensus 326 ~~~~a~~~L~~l~ 338 (389)
.+..|-.++...+
T Consensus 123 nk~la~~Li~~Ws 135 (145)
T 2xpp_A 123 VRASAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888877776544
No 260
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.37 E-value=17 Score=27.96 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
+-|.|..|...|.+.....=|..||..|..+-+. ..|..|+.++..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCC
Confidence 4489999999887644445678899999887653 357777766643
No 261
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.01 E-value=20 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=21.0
Q ss_pred CcCcCCcccCcCC-eecCCccCccHHHHHHHHh
Q 016464 12 FRCPISLELMKDP-VIVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 12 ~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~~~ 43 (389)
|.|..|...|.+. ....=|..||+.|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 7777777776543 3344566778888777665
No 262
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=52.31 E-value=13 Score=29.10 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
+-|.|..|...|.+.-...=|..||..|..+-+ ...|..|+.++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 347777777776553333456778888876643 35699998877643
No 263
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=52.16 E-value=11 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG 45 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~ 45 (389)
...+||+|+..+.... +..++ .-+.-|+.|...+
T Consensus 62 ~~~~cP~~~~~l~~~~-L~pn~-~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 62 NSPTDPFNRQTLTESM-LEPVP-ELKEQIQAWMREK 95 (100)
T ss_dssp SCSBCSSSCCBCCTTS-SEECH-HHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCChhh-ceECH-HHHHHHHHHHHHh
Confidence 3579999999987653 33344 4488899999753
No 264
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.13 E-value=13 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=28.1
Q ss_pred cCcCCcccCcCCee---cCCccCccHHHHHHHHhcCCCCCCCC
Q 016464 13 RCPISLELMKDPVI---VSTGQTYERSCIQKWLDAGHKTCPKT 52 (389)
Q Consensus 13 ~Cpic~~~~~~pv~---~~c~h~~c~~ci~~~~~~~~~~cp~c 52 (389)
.|-.|+..+.++-. -.|++.||-.| +.+..+.-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 48888888866542 35899999998 44544556679987
No 265
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=51.03 E-value=5 Score=26.96 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=11.8
Q ss_pred CCCCCCCcCcCCccc
Q 016464 6 PVIPDDFRCPISLEL 20 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~ 20 (389)
.++|+++.||+|+.-
T Consensus 63 edlPddW~CPvCga~ 77 (87)
T 1s24_A 63 EDIPDDWCCPDCGAT 77 (87)
T ss_dssp GGCCTTCCCSSSCCC
T ss_pred hHCCCCCCCCCCCCC
Confidence 368889999999853
No 266
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=50.68 E-value=47 Score=26.22 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=63.4
Q ss_pred ChHHHHHHHcc------CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC---ChhhHHHHHHHHHHhccC
Q 016464 188 AIPDIVDVLKN------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 188 ~l~~L~~lL~~------~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~ 258 (389)
.+|-++.++.+ .+.......+.....|..++...-...-...+|.++..+-.. ...+|..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 46666666643 255566666777777766554322222235667777776432 237999999999999865
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcc--cHHHHHHHHHHHh
Q 016464 259 QGNKARAVRAGIVPPLMRFLKDAGGG--MVDEALAILAILA 297 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~--~~~~a~~~L~~l~ 297 (389)
-...-.-....++..+.+.+.++... ...-|+..|..+.
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 33332333455666777777664433 2333444444443
No 267
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=50.41 E-value=8.2 Score=22.76 Aligned_cols=41 Identities=5% Similarity=0.108 Sum_probs=23.5
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..|.|++|...|.....+ ..-+........+.|+.|+..+.
T Consensus 3 ~~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp --CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEES
T ss_pred CCccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhC
Confidence 358899999888764322 11122222234567999987653
No 268
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.27 E-value=43 Score=24.80 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhc
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEA 145 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 145 (389)
...+..|.+.|+..++.++..|++.|..|+... +..+..+.+.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 457888899999999999999999999998644 3344444443
No 269
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=47.23 E-value=86 Score=23.34 Aligned_cols=83 Identities=6% Similarity=-0.028 Sum_probs=61.0
Q ss_pred HHhcChhhHHHhhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--Ch
Q 016464 295 ILASHQEGKTAIGQAEPIPVLMEVIRT------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TD 366 (389)
Q Consensus 295 ~l~~~~~~~~~i~~~~~v~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~ 366 (389)
........+..+++.|++..+-..|.- .+..+|...+.+|.++-.. .+.+.+.|+-..++.+-++. .+
T Consensus 46 ~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~k~~~et~ 121 (145)
T 2xpp_A 46 DILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYSINPKESK 121 (145)
T ss_dssp HHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHHHCTTSCH
T ss_pred HHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhhcCCccCH
Confidence 334455567788889999999999864 2467899999999887532 45567777777777666665 57
Q ss_pred HHHHHHHHHHHHHHh
Q 016464 367 RAKRKAGSILELLQR 381 (389)
Q Consensus 367 ~~~~~a~~~L~~l~~ 381 (389)
..|+.|..++..-++
T Consensus 122 ~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 122 EVRASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999988876554
No 270
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.90 E-value=16 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCcCcCCcccCcCCe-ecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 11 DFRCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
...|+-|.+...+.. +..-|..|...| +.|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 357888888776653 444555555444 45777776664
No 271
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.42 E-value=25 Score=19.21 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|+.|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 458888888877653
No 272
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.08 E-value=16 Score=22.94 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=16.6
Q ss_pred CcCcCCcccCcCCe-ecCCccCccHHHHHHHHh
Q 016464 12 FRCPISLELMKDPV-IVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 12 ~~Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~ 43 (389)
|.|..|...|.+-. ...-|..||+.|..+.+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 56666665554422 223455566666655543
No 273
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=45.65 E-value=9.7 Score=37.42 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=36.6
Q ss_pred CCCCCcCcCCcccCcCCe--------e--cCCccCc--------------------cHHHHHHHHhc-------CCCCCC
Q 016464 8 IPDDFRCPISLELMKDPV--------I--VSTGQTY--------------------ERSCIQKWLDA-------GHKTCP 50 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv--------~--~~c~h~~--------------------c~~ci~~~~~~-------~~~~cp 50 (389)
.|+.-+|+-|...|.||- + +.||-.| |..|-.+|-+- ....||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 577789999999998873 1 2466544 99999999862 123599
Q ss_pred CCCccCc
Q 016464 51 KTQQTLL 57 (389)
Q Consensus 51 ~c~~~~~ 57 (389)
.|+-.+.
T Consensus 183 ~CGP~l~ 189 (772)
T 4g9i_A 183 VCGPSYR 189 (772)
T ss_dssp TTSCCEE
T ss_pred cCCceEE
Confidence 9986653
No 274
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.28 E-value=5.7 Score=31.32 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=34.7
Q ss_pred CCcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 11 DFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 11 ~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
-|.|..|...|.+ +....=|..||..|..+-+.. ...|+.|+.++..
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred CcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 4899999998874 555556888999999887642 1159999887753
No 275
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=44.92 E-value=1e+02 Score=23.60 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=59.2
Q ss_pred HhcChhhHHHhhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChH
Q 016464 296 LASHQEGKTAIGQAEPIPVLMEVIRT------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDR 367 (389)
Q Consensus 296 l~~~~~~~~~i~~~~~v~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~ 367 (389)
.......+..+++.|++..+-..|.- .+..+|...+.+|..|-. + ...+.+.|+-..++.+.++. .+.
T Consensus 62 ~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI-~---~e~Lk~SglGkvV~~l~k~~~et~~ 137 (170)
T 3nfq_A 62 VLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV-K---TEHLKESGLGRVVIFYTKSKRVEAQ 137 (170)
T ss_dssp HHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-C---HHHHHHHSHHHHHHHHHHCTTSCHH
T ss_pred HHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC-C---HHHHhhCCCCceeeehhcCCcccHH
Confidence 34455667788889999999999864 246889999999988753 2 34566777766666666665 578
Q ss_pred HHHHHHHHHHHHH
Q 016464 368 AKRKAGSILELLQ 380 (389)
Q Consensus 368 ~~~~a~~~L~~l~ 380 (389)
.++.|..++..-+
T Consensus 138 nkrla~~Li~~Ws 150 (170)
T 3nfq_A 138 LARLAEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8999998887653
No 276
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=43.99 E-value=9.6 Score=36.53 Aligned_cols=50 Identities=28% Similarity=0.609 Sum_probs=36.5
Q ss_pred CCCCCCcCcCCcccCcCCe--------e--cCCccCc--------------------cHHHHHHHHhc-------CCCCC
Q 016464 7 VIPDDFRCPISLELMKDPV--------I--VSTGQTY--------------------ERSCIQKWLDA-------GHKTC 49 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv--------~--~~c~h~~--------------------c~~ci~~~~~~-------~~~~c 49 (389)
-.|+.-+|+-|...|.||- + +.||-.| |..|-.+|-+- ....|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 3577789999999998863 2 2466544 99999999862 12359
Q ss_pred CCCCccC
Q 016464 50 PKTQQTL 56 (389)
Q Consensus 50 p~c~~~~ 56 (389)
|.|+-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9998666
No 277
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.95 E-value=3.4 Score=27.83 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=18.0
Q ss_pred cCcCCcccCc-C----CeecC-CccCccHHHHHHH
Q 016464 13 RCPISLELMK-D----PVIVS-TGQTYERSCIQKW 41 (389)
Q Consensus 13 ~Cpic~~~~~-~----pv~~~-c~h~~c~~ci~~~ 41 (389)
-||-|...+. + +|.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4887776542 2 23443 7777777776665
No 278
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.56 E-value=14 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=22.0
Q ss_pred CCCCCcCcCCcccCcCCe---e-cCCccCccHHHHH
Q 016464 8 IPDDFRCPISLELMKDPV---I-VSTGQTYERSCIQ 39 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv---~-~~c~h~~c~~ci~ 39 (389)
+.++-.|..|...|.--. - -.||..||..|..
T Consensus 8 W~~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 8 WIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CccCCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 344568999998775321 1 3599999998864
No 279
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=43.40 E-value=1.1e+02 Score=23.47 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=55.9
Q ss_pred ccCCCchHHHHhcCCcHHHHHHHhh------cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChHHH
Q 016464 256 SIYQGNKARAVRAGIVPPLMRFLKD------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNR 327 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~ 327 (389)
.....-+..+++.|++..+-..|.- +...++...+.+|.++- -.++.+.+.|.-..++-+-.+. .+..+
T Consensus 63 L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvV~~l~k~~~et~~nk 139 (170)
T 3nfq_A 63 LSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP---VKTEHLKESGLGRVVIFYTKSKRVEAQLA 139 (170)
T ss_dssp HTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHSHHHHHHHHHHCTTSCHHHH
T ss_pred HhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC---CCHHHHhhCCCCceeeehhcCCcccHHHH
Confidence 3344556778899999999999865 44567888888888774 3355566665555554444443 47778
Q ss_pred HHHHHHHHHHhh
Q 016464 328 ENAAAVLWAICT 339 (389)
Q Consensus 328 ~~a~~~L~~l~~ 339 (389)
..|-.++...+.
T Consensus 140 rla~~Li~~WsR 151 (170)
T 3nfq_A 140 RLAEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 280
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.24 E-value=2.2 Score=36.67 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCCcCcCCcccCcCCeec----CCc--cCccHHHHHHHHhcCCCCCCCCCcc
Q 016464 9 PDDFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~----~c~--h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
...-.||+|+....--++. .-| +.+|..|=.+|.-. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 6678999999866544433 234 46788898888653 4579999875
No 281
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=42.92 E-value=14 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.8
Q ss_pred CCCCCCCcCcCCccc
Q 016464 6 PVIPDDFRCPISLEL 20 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~ 20 (389)
..+|..|.||.|...
T Consensus 18 ~~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 18 GTLETQFTCPFCNHE 32 (85)
T ss_dssp CCCSSCCCCTTTCCS
T ss_pred CCCCCeEcCCCCCCC
Confidence 578899999999865
No 282
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=42.91 E-value=15 Score=22.50 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..|.|+.|+..|...-.|. .-....-.+..+.|+.|+..+.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-------~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-------RHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-------HHHHHHHTCCCEECTTTCCEES
T ss_pred CCccCCCCCCEeCCHHHHH-------HHHHHhCCCcCeECCCCCCCcC
Confidence 3588999998887643221 1111222234568999987764
No 283
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.66 E-value=20 Score=22.98 Aligned_cols=44 Identities=9% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCCcCcCCcccCcC-CeecCCccCccH-HHHHHHHhcCCCCCCCCCccC
Q 016464 10 DDFRCPISLELMKD-PVIVSTGQTYER-SCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 10 ~~~~Cpic~~~~~~-pv~~~c~h~~c~-~ci~~~~~~~~~~cp~c~~~~ 56 (389)
+-|.|..|...|.+ +....=|..||+ .|..+.+. ..|..|+...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 45899999998876 444556788998 59876543 4588886543
No 284
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.60 E-value=12 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=13.5
Q ss_pred CcCcCCcccCc--CCeecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMK--DPVIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~--~pv~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...|. +.....=|..||..|....
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 55555555544 1222233444555555443
No 285
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.80 E-value=39 Score=18.78 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=21.4
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh----cCCCCCCCCC
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQ 53 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~----~~~~~cp~c~ 53 (389)
-...|.|++|...|...- -+..... +..+.|+.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVY-----------HLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCCSEEETTTTEEESSHH-----------HHHHHGGGSCSCCCCCSCCCC
T ss_pred CCcCeeCCCCCcccCCHH-----------HHHHHHHhcCCCCCccCCCCC
Confidence 345688999888777532 2333332 2346798886
No 286
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=41.60 E-value=3 Score=27.64 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCcCcC--CcccCc-C----Ceec------CCccCccHHHHHHHHh
Q 016464 11 DFRCPI--SLELMK-D----PVIV------STGQTYERSCIQKWLD 43 (389)
Q Consensus 11 ~~~Cpi--c~~~~~-~----pv~~------~c~h~~c~~ci~~~~~ 43 (389)
..-||- |...+. + +|.- .||+.||..|-+.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 456887 877653 2 3443 5899999999998864
No 287
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.39 E-value=14 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCcCcCCcccCcCC-eecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 11 DFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 11 ~~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
=|.|..|...|.+. ....=|..||+.|..+. ....|..|+.++..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 38899999888654 23446788999887543 34579999888763
No 288
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.00 E-value=24 Score=22.07 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=17.6
Q ss_pred CcCcCCcccCcC-CeecCCccCccHHHHHHHH
Q 016464 12 FRCPISLELMKD-PVIVSTGQTYERSCIQKWL 42 (389)
Q Consensus 12 ~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~~ 42 (389)
|.|..|...+.+ +....=|..||+.|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 667777666643 2223345667777665543
No 289
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.35 E-value=15 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHh----cCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~----~~~~~cp~c~~~~~ 57 (389)
..+.|++|...|... .-+..... +..+.|+.|+..+.
T Consensus 27 ~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 447899888887763 23333332 23467999987663
No 290
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=40.10 E-value=53 Score=18.87 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh-----cCCCCCCCCCccCc
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD-----AGHKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~-----~~~~~cp~c~~~~~ 57 (389)
-...|.|++|...|... .-+..... ...+.|+.|+..+.
T Consensus 9 ~~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 34568999998877653 22333321 23468999987664
No 291
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=39.67 E-value=15 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=13.7
Q ss_pred CCCCCCCCcCcCCcccCc
Q 016464 5 SPVIPDDFRCPISLELMK 22 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~ 22 (389)
...+-+.+.||+|+..+.
T Consensus 2 d~~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLE 19 (68)
T ss_dssp CCSSSCCCBCSSSCCBCE
T ss_pred ChHHhhheECCCCCCcCe
Confidence 345678899999998654
No 292
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.44 E-value=31 Score=18.94 Aligned_cols=15 Identities=13% Similarity=0.312 Sum_probs=11.0
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 458888888877754
No 293
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.21 E-value=25 Score=23.44 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=8.4
Q ss_pred cCcCCcccCcCCeecCCcc
Q 016464 13 RCPISLELMKDPVIVSTGQ 31 (389)
Q Consensus 13 ~Cpic~~~~~~pv~~~c~h 31 (389)
.|+-|.+...+.++..-|.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~ 45 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGK 45 (90)
T ss_dssp BBSSSCCBCCSCEEEETTE
T ss_pred CCccCCCEecceEEEECCc
Confidence 4555555444443333333
No 294
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.73 E-value=12 Score=24.45 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=18.4
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..|+-|.+.+.+.++..-|..|...| +.|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELT 52 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCC
T ss_pred CCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccC
Confidence 45666666555544433444333322 44656655554
No 295
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.67 E-value=48 Score=17.98 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=10.9
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eov_A 11 KPYKCSDCGKSFTWK 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred CCccCCccChhhCCH
Confidence 458888888877653
No 296
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.56 E-value=48 Score=17.97 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 11 KLYNCKECGKSFSRA 25 (46)
T ss_dssp CCCCBTTTTBCCSCH
T ss_pred CCeECCCCCCccCch
Confidence 457888888777653
No 297
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.48 E-value=48 Score=18.03 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=11.2
Q ss_pred CCCCcCcCCcccCcCC
Q 016464 9 PDDFRCPISLELMKDP 24 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p 24 (389)
...|.|++|...|...
T Consensus 10 ~k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQN 25 (46)
T ss_dssp CSSCBCTTTCCBCSSH
T ss_pred CcCeECCCCCCeeCCH
Confidence 3458888888777653
No 298
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.38 E-value=31 Score=21.48 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=19.8
Q ss_pred CcCcCCcccCcCCe-ecCCccCccHHHHHHHHh
Q 016464 12 FRCPISLELMKDPV-IVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 12 ~~Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~ 43 (389)
|.|..|...|.... ...=|..||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 67777777665432 234466777777766553
No 299
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.17 E-value=49 Score=17.94 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=10.9
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 458888888777653
No 300
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=38.12 E-value=3.8e+02 Score=28.20 Aligned_cols=258 Identities=12% Similarity=0.031 Sum_probs=124.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016464 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.....++++.+.-....++.+.+..|-.+..++. +. .++..|.++|.. ++.+....+.+|.+|..+++....
T Consensus 156 ~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~-H~------~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~ 227 (1323)
T 3s4w_B 156 KDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQ-HA------NVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSK 227 (1323)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG-HH------HHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh-hH------HHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHH
Confidence 4566666666665555667777777777765332 11 245677777766 456788888888888776543322
Q ss_pred ----hc------ccCChHHHHHHHcc-CCHHHHHHHHHHHHH---hcCC--c----hhhHHHHhh--------------C
Q 016464 183 ----IV------NAGAIPDIVDVLKN-GSMEARENAAATLFS---LSVI--D----ENKVAIGAA--------------G 228 (389)
Q Consensus 183 ----i~------~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~---Ls~~--~----~~~~~~~~~--------------~ 228 (389)
+. +...+|.++++|-. .+..-...++..|.. +... + ..+..+... +
T Consensus 228 vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~ 307 (1323)
T 3s4w_B 228 IRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKD 307 (1323)
T ss_dssp HHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHH
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccc
Confidence 22 34568888888842 222212223333332 1100 0 001111000 1
Q ss_pred cHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh-hcCcccHHHHHHHHHHHhcChhhHH
Q 016464 229 AIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKT 304 (389)
Q Consensus 229 ~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~ 304 (389)
....+++.+++. ...+.+.-++++.++....+ ...++.++=++. +.....+..|-.++.+-.....-..
T Consensus 308 ~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~ 380 (1323)
T 3s4w_B 308 CIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE-------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQE 380 (1323)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCH
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchH
Confidence 112234444332 44555555556665543322 244454443332 2333455666666666554322211
Q ss_pred Hhh----------ccCChHHHHH----HHhcCChHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHH
Q 016464 305 AIG----------QAEPIPVLME----VIRTGSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAK 369 (389)
Q Consensus 305 ~i~----------~~~~v~~L~~----ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~ 369 (389)
.++ -...++.++. ++++.++.++..+......+-.. +..++++ ++..|+..+-++...-.
T Consensus 381 ~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqe-----Vl~~Lv~hi~sg~~~eV 455 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQE-----VVGALVTHVCSGTEAEV 455 (1323)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHH-----HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHH-----HHHHHHhhhcCCCcHHH
Confidence 111 1234444443 34556777777776655444332 3333333 44455555555544444
Q ss_pred HHHHHHHHHHH
Q 016464 370 RKAGSILELLQ 380 (389)
Q Consensus 370 ~~a~~~L~~l~ 380 (389)
..|..+|..|+
T Consensus 456 d~ALdvL~~L~ 466 (1323)
T 3s4w_B 456 DTALDVLLELI 466 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 301
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=37.99 E-value=1.8e+02 Score=29.62 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=92.2
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHcc----CCHHHHHHHHHHHHHhcCCchhhH
Q 016464 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLSVIDENKV 222 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~ 222 (389)
.+.-|+++--+.-.++|..|=.+|......-..... -++|.+++.|+. .+.+-.+-|+.+|. .. ....
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~----~iip~ll~~L~~~~~~~~~~~iKGaLy~L~---~k-~~~~ 205 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYG----VVINKIIPSLEKAIKDHDYMKIQVILNVLL---IK-KIHR 205 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHH----HHHHHHHHHHHHHHHTCSCHHHHHHHHHTT---SH-HHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHhccccCCCHHHHHHHHHHHh---hh-hhhh
Confidence 456666766677889999999888876542222111 246667776654 34444444555443 11 1111
Q ss_pred HHHh-----hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC---------------------c---------------
Q 016464 223 AIGA-----AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG---------------------N--------------- 261 (389)
Q Consensus 223 ~~~~-----~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~---------------------~--------------- 261 (389)
.+.. ...++.|++....+.+.++..+-.+...+...-. .
T Consensus 206 ~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~ 285 (997)
T 1vsy_5 206 KLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKK 285 (997)
T ss_dssp HGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHH
T ss_pred HHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 1344555555555556665554444333322100 0
Q ss_pred hHHHHh--cCCcHHHHHHHhh-cC--cccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 016464 262 KARAVR--AGIVPPLMRFLKD-AG--GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 336 (389)
Q Consensus 262 ~~~~~~--~~~i~~L~~ll~~-~~--~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~ 336 (389)
+....+ .+....|+++..+ .+ -.....++..|.++....+ ......++..+++.+.+..+.+|..|..++..
T Consensus 286 r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 286 REYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 000000 1222333344422 23 3445555555555543221 11222356677777788889999999988877
Q ss_pred Hhhc
Q 016464 337 ICTG 340 (389)
Q Consensus 337 l~~~ 340 (389)
+...
T Consensus 363 il~~ 366 (997)
T 1vsy_5 363 TCNK 366 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 302
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.96 E-value=20 Score=22.19 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.6
Q ss_pred CcCcCCcccC
Q 016464 12 FRCPISLELM 21 (389)
Q Consensus 12 ~~Cpic~~~~ 21 (389)
|.|..|...+
T Consensus 32 F~C~~C~~~L 41 (66)
T 1nyp_A 32 FVCAKCEKPF 41 (66)
T ss_dssp CBCTTTCCBC
T ss_pred CEECCCCCCC
Confidence 4444444444
No 303
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=37.42 E-value=17 Score=35.63 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=36.4
Q ss_pred CCCCCCcCcCCcccCcCCe--------e--cCCccC--------------------ccHHHHHHHHhc-------CCCCC
Q 016464 7 VIPDDFRCPISLELMKDPV--------I--VSTGQT--------------------YERSCIQKWLDA-------GHKTC 49 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv--------~--~~c~h~--------------------~c~~ci~~~~~~-------~~~~c 49 (389)
-.|+.-+|+-|...|.||- + +.||-. .|..|-.+|-+- ....|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3567789999999998864 2 246643 499999998762 12359
Q ss_pred CCCCccCc
Q 016464 50 PKTQQTLL 57 (389)
Q Consensus 50 p~c~~~~~ 57 (389)
|.|+-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99986653
No 304
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.32 E-value=11 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=21.8
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
|.|++|...|..+..+. .-+........+.|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~~l~-------~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK-------KHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHH-------HHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHH-------HHHHhcCCCCCccCCCCCchhc
Confidence 67999888887643211 1111111123467999987653
No 305
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.16 E-value=51 Score=17.91 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2epz_A 11 KPFDCIDCGKAFSDH 25 (46)
T ss_dssp CSBCCTTTCCCBSSH
T ss_pred CCeECCCCCceeCCH
Confidence 458888888777653
No 306
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=37.01 E-value=80 Score=27.69 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=62.3
Q ss_pred cCcccHHHHHHHHHHHhcChh-hHHHhhccCChHHHHHHHhc--------CChHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q 016464 281 AGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRT--------GSPRNRENAAAVLWAICTGDAEQLKIAREL 351 (389)
Q Consensus 281 ~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~v~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 351 (389)
..+..+.-+++++.|+-.++. ++..+.+......++..+.. .+..++..+..++.|++....... .+.
T Consensus 211 ~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~ 287 (362)
T 3l3f_X 211 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDL 287 (362)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCT
T ss_pred CChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chH
Confidence 445677889999999998888 45555432223344444421 234577888888889887431100 012
Q ss_pred CcHHHHHHHHH---------hCChHHHHHHHHHHHHHHhh
Q 016464 352 DAEEALKELSE---------SGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 352 ~~~~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~ 382 (389)
.....+.+++. ..+++...++..+|.+|.-.
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 34455666665 35888999999999988743
No 307
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=36.54 E-value=35 Score=18.69 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=10.9
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 11 KPFKCVECGKGFSRR 25 (46)
T ss_dssp CSBCCSSSCCCBSST
T ss_pred CCcccCccCcccCCH
Confidence 458888888877654
No 308
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.26 E-value=31 Score=18.94 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=11.1
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytt_A 11 KPYQCSECGKSFSGS 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred CCeeCCCCCcccCCH
Confidence 458888888877764
No 309
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.93 E-value=22 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
..-.|.-|.+...+.++..-+..|...| +.|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCC
Confidence 3456888887776655444555554443 457677666653
No 310
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.75 E-value=54 Score=17.77 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=10.4
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 11 KPFKCDICGKSFCGR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCcCCchhCCH
Confidence 457888887777653
No 311
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=35.57 E-value=55 Score=17.78 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=11.1
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emk_A 11 KPYECKECGKAFSQT 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CceECCCCCchhCCH
Confidence 448888888877754
No 312
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.46 E-value=37 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=16.3
Q ss_pred CcCcCCcccCc--CCeec-CCccCccHHHHHHHHh
Q 016464 12 FRCPISLELMK--DPVIV-STGQTYERSCIQKWLD 43 (389)
Q Consensus 12 ~~Cpic~~~~~--~pv~~-~c~h~~c~~ci~~~~~ 43 (389)
|.|..|...|. +...+ .=|..||+.|..+.+.
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 55666665553 23222 3445566666555443
No 313
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=34.93 E-value=21 Score=22.39 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
...|.|+.|...|...-.+. .-+........+.|+.|+..+.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~-------~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA-------SHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH-------HHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHHH-------HHHHHcCCCCCEECCCCCchhC
Confidence 45689999998887642211 1111111223467999987653
No 314
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.82 E-value=44 Score=18.17 Aligned_cols=14 Identities=7% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eml_A 11 KPYECSVCGKAFSH 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCcCCccCC
Confidence 45788888877765
No 315
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=34.81 E-value=57 Score=17.69 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 11 KTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 458888888777653
No 316
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.81 E-value=57 Score=17.71 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 458888888877653
No 317
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.56 E-value=9 Score=25.86 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCCCcCcCCcccCc---CCeec--CCccCccHHHHHHHHh-cCCCCCCCCCccCcCCCC
Q 016464 8 IPDDFRCPISLELMK---DPVIV--STGQTYERSCIQKWLD-AGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~---~pv~~--~c~h~~c~~ci~~~~~-~~~~~cp~c~~~~~~~~~ 61 (389)
..++..|.+|++.-. +.+++ .|...|-..|+..-.. .+...||.|........+
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 456789999997642 12332 4777888888864322 356789998765444433
No 318
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=34.54 E-value=9.5 Score=24.71 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCCcCcCCcccCcC-Ceec--CCccCccHHHHHHHHhc---CCCCCCCCCccC
Q 016464 10 DDFRCPISLELMKD-PVIV--STGQTYERSCIQKWLDA---GHKTCPKTQQTL 56 (389)
Q Consensus 10 ~~~~Cpic~~~~~~-pv~~--~c~h~~c~~ci~~~~~~---~~~~cp~c~~~~ 56 (389)
+...|++|+..-.. .++. .|...|...|+.--... +...||.|...+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 44679999987543 3332 37777888888643332 456899997554
No 319
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.47 E-value=57 Score=17.63 Aligned_cols=15 Identities=7% Similarity=0.310 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 457888888777653
No 320
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.43 E-value=18 Score=23.63 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCCCcCcCCcccCc-CCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 8 IPDDFRCPISLELMK-DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~-~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
+.....|+-|.+... ...+..-+..|...| +.|..|+.++.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCccccccc---------CCcCcCCCCcC
Confidence 444567888877654 222323344343333 44666666554
No 321
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.29 E-value=24 Score=21.94 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=23.7
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
...|.|++|...|.....+. .-+........+.|+.|...+.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~-------~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV-------QHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH-------HHHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHH-------HHHHhcCCCCCeECCCCCcccC
Confidence 34589999988877542211 1111111123467999987653
No 322
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.98 E-value=44 Score=18.19 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep2_A 11 KPYECSICGKSFTKK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCCH
Confidence 457888888777653
No 323
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.57 E-value=48 Score=17.97 Aligned_cols=16 Identities=6% Similarity=0.322 Sum_probs=11.3
Q ss_pred CCCCcCcCCcccCcCC
Q 016464 9 PDDFRCPISLELMKDP 24 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p 24 (389)
...|.|++|...|...
T Consensus 10 ~~~~~C~~C~k~F~~~ 25 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQN 25 (46)
T ss_dssp CCSSEETTTTEECSSH
T ss_pred CCCeECCCcChhhCCH
Confidence 3458888888877653
No 324
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=33.51 E-value=50 Score=22.28 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=12.4
Q ss_pred CCCCCcCcCCcccCcC
Q 016464 8 IPDDFRCPISLELMKD 23 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~ 23 (389)
-...|.|++|...|..
T Consensus 14 ~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCBCSSSCCBCSS
T ss_pred CCcCeECCCCCCccCC
Confidence 3456899999988865
No 325
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.28 E-value=61 Score=17.58 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 458888888877653
No 326
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.96 E-value=29 Score=20.42 Aligned_cols=36 Identities=8% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHh----cCCCCCCCCCccCc
Q 016464 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~----~~~~~cp~c~~~~~ 57 (389)
.|.|+.|...|..... +..... ...+.|+.|+..+.
T Consensus 2 ~~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFARQEH-----------LKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBSCHHH-----------HHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCcCCCCccccCCHHH-----------HHHHHHHhCCCCCccCCCCCCccC
Confidence 4789998887775422 222221 23457999987653
No 327
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.67 E-value=31 Score=21.68 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=14.0
Q ss_pred CcCcCCcccCcC-CeecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMKD-PVIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...+.+ +....=|..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 555555555543 222233445555555443
No 328
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=32.66 E-value=48 Score=18.01 Aligned_cols=14 Identities=7% Similarity=0.382 Sum_probs=10.1
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ema_A 11 KRYKCNECGKVFSR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred cCcCCCCCcchhCC
Confidence 45788888877765
No 329
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.52 E-value=16 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred CcCcCCcccCcCCe---e-cCCccCccHHHHHH
Q 016464 12 FRCPISLELMKDPV---I-VSTGQTYERSCIQK 40 (389)
Q Consensus 12 ~~Cpic~~~~~~pv---~-~~c~h~~c~~ci~~ 40 (389)
-.|.+|...|.--. - -.||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 47999998776321 1 36999999998643
No 330
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.43 E-value=29 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.1
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 11 RPYICTVCGKAFTDR 25 (46)
T ss_dssp CSEECTTTCCEESSH
T ss_pred CCcCCCCCCchhCCH
Confidence 458888888877764
No 331
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.25 E-value=9.1 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=16.8
Q ss_pred cCCeecCCccCccHHHHHHHHhcCCCCCCCCCcc
Q 016464 22 KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 22 ~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
..|.-..||++|+ .-+. ....||.|+..
T Consensus 66 ~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEIN-IPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSS-CCSSCSSSCCC
T ss_pred ECcChhhCcCeec-----ccCC-CCCCCcCCCCC
Confidence 3444567999881 1111 23569999865
No 332
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=32.13 E-value=47 Score=18.02 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=10.1
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el4_A 11 KPYGCSQCAKTFSL 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CceECCCCCchhCC
Confidence 44788888877765
No 333
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.11 E-value=46 Score=18.13 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 11 KSHQCHECGRGFTLK 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCcCCCccCCH
Confidence 458888888777653
No 334
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.03 E-value=60 Score=22.77 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=27.2
Q ss_pred CCCcCcCCcccCcC---CeecCCccCccHHHHHHHHhc
Q 016464 10 DDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDA 44 (389)
Q Consensus 10 ~~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~ 44 (389)
+-|.|..|...|.+ +....=|..||+.|..+-+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 44899999999974 444556889999999887763
No 335
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.78 E-value=34 Score=18.76 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=11.0
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 11 KPYKCVECGKGYKRR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECcccCchhCCH
Confidence 458888888877653
No 336
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.50 E-value=22 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCcCcCCcccCc-CCeecCCccCccHHHHHHHHh-cCCCCCCCCCccC
Q 016464 10 DDFRCPISLELMK-DPVIVSTGQTYERSCIQKWLD-AGHKTCPKTQQTL 56 (389)
Q Consensus 10 ~~~~Cpic~~~~~-~pv~~~c~h~~c~~ci~~~~~-~~~~~cp~c~~~~ 56 (389)
..|.|++|...|. ....+. .-+..... ...+.|+.|...+
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-------~H~~~h~~~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-------KHMEVCQKLQDALKCQHCRKQF 64 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-------HHHHHHHHHHHHHSCSSSCCCC
T ss_pred CCcCCCCCCCChhhhHHHHH-------HHHHHHcCCCCCEECCCCCCcc
Confidence 4589999998887 543322 11212122 2346799998765
No 337
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.42 E-value=2.8e+02 Score=28.22 Aligned_cols=62 Identities=13% Similarity=-0.028 Sum_probs=39.8
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhHHHHhhCcHHHHHHHhcc----CChhhHHHHHHHHH
Q 016464 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIF 253 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~ 253 (389)
..+..|+++--+...+++..|-.+|......-. .+.. +++.+++.|.. .+.+-.+-|+.+|.
T Consensus 133 ~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~ 199 (997)
T 1vsy_5 133 LLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLL 199 (997)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHh
Confidence 356777777778889999999999988765433 3332 45666666643 34444455555443
No 338
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.06 E-value=31 Score=18.87 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=10.9
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 11 NPYECHECGKAFSRK 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred cCcCCCCCCcccCcH
Confidence 458888888877654
No 339
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.78 E-value=24 Score=22.89 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=23.8
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.+..-.|+-|.+...+.++..-+..|...| +.|-.|+.++.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 345567888887766655544555554443 34666665543
No 340
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.63 E-value=35 Score=18.66 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=10.9
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 11 KPYMCNECGKAFSVY 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCeECCCCCchhCCH
Confidence 458888888877654
No 341
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.32 E-value=32 Score=21.11 Aligned_cols=45 Identities=16% Similarity=0.457 Sum_probs=30.5
Q ss_pred CCCCCcCcCCcccCcCCeec--CCccCccHHHHHHHHh---cCCCCCCCCCc
Q 016464 8 IPDDFRCPISLELMKDPVIV--STGQTYERSCIQKWLD---AGHKTCPKTQQ 54 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~--~c~h~~c~~ci~~~~~---~~~~~cp~c~~ 54 (389)
-..+..|.+|++. .-++. .|...|...|+..-+. .+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4556789999873 33332 4777888999876443 35568999864
No 342
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.21 E-value=54 Score=17.80 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em7_A 11 KPYKCEECGKGFICR 25 (46)
T ss_dssp CSEECSSSCCEESCH
T ss_pred cCccCCCccchhCCH
Confidence 457888888777653
No 343
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.18 E-value=51 Score=17.91 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytk_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCEeCCcCCCccCCH
Confidence 457888888777653
No 344
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.02 E-value=56 Score=17.72 Aligned_cols=14 Identities=7% Similarity=0.430 Sum_probs=10.2
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 11 KPYKCHECGKVFRR 24 (46)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45788888777765
No 345
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.85 E-value=38 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=13.8
Q ss_pred CcCcCCcccCcCC-eecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMKDP-VIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...|.+- ....=|..||..|..+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 4555555544431 22223445555555444
No 346
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.73 E-value=54 Score=17.80 Aligned_cols=14 Identities=7% Similarity=0.451 Sum_probs=10.1
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ene_A 11 KPYKCNECGKVFRH 24 (46)
T ss_dssp SSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45788888777765
No 347
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.62 E-value=59 Score=17.58 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eme_A 11 KPYVCDYCGKAFGLS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeECCCCChhhCCH
Confidence 458888888777653
No 348
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.59 E-value=37 Score=22.92 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=20.3
Q ss_pred CcCcCCcccC-cCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 12 FRCPISLELM-KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~-~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
|.|+.|...| .....+ +.-+... .+..+.|+.|+..+.
T Consensus 35 ~~C~~C~k~F~~~~~~L-------~~H~~~h-~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 35 VSCPTCQAVGRKTIEGL-------KKHMENC-KQEMFTCHHCGKQLR 73 (96)
T ss_dssp EECTTTCSCEESSHHHH-------HHHHHHH-CCCCCCCSSSCCCCS
T ss_pred cCCCCCCCCcccCHHHH-------HHHHHHH-CCCCeECCCCCCeeC
Confidence 5677766666 442111 1112223 344578999987653
No 349
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.42 E-value=58 Score=17.62 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 11 RPHKCNECGKSFIQS 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCeeCCCCChhhCCH
Confidence 457888888777653
No 350
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.33 E-value=29 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=25.9
Q ss_pred CCCcCcCCcccCc--CCeecCCccCccHHHHHHHHh
Q 016464 10 DDFRCPISLELMK--DPVIVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 10 ~~~~Cpic~~~~~--~pv~~~c~h~~c~~ci~~~~~ 43 (389)
+=|.|-.|...|. +.....-|..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 3489999999883 344555678899999988875
No 351
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=29.17 E-value=60 Score=17.62 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=10.2
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el6_A 11 NPYKCSQCEKSFSG 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCeECCCCCcccCC
Confidence 34788888877765
No 352
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.02 E-value=33 Score=18.78 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 11 KPYKCSECGKAFHRH 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCCCeeCCh
Confidence 458888888777653
No 353
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.97 E-value=46 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCcCcCCcccCcCCe-ecCCccCccHHHHHHHHh
Q 016464 10 DDFRCPISLELMKDPV-IVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~ 43 (389)
+-|.|..|...|.+.. ...=|..||..|..+-+.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 4489999999887643 344578899999998875
No 354
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.93 E-value=47 Score=20.84 Aligned_cols=38 Identities=8% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh----cCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~----~~~~~cp~c~~~~~ 57 (389)
...|.|++|...|.... -+..... ...+.|+.|+..+.
T Consensus 16 ~~~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSS-----------DLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHH-----------HHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHH-----------HHHHHHHHcCCCcCeeCCCCCCccC
Confidence 34589999988877532 2333322 23457999987653
No 355
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.53 E-value=60 Score=17.56 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=10.5
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytj_A 11 KPYICAECGKAFTIR 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCCCChhhCCH
Confidence 457888887777653
No 356
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.39 E-value=23 Score=16.57 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=7.2
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 566666665553
No 357
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.37 E-value=41 Score=18.38 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=11.0
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 11 RPYGCNECGKNFGRH 25 (46)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCEEccccCcccCCH
Confidence 458888888877654
No 358
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.92 E-value=50 Score=17.94 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSK 25 (46)
T ss_dssp CSEEETTTTEEESCH
T ss_pred CCeECCCCCCccCCH
Confidence 457888888777653
No 359
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.90 E-value=63 Score=17.52 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=10.4
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2emf_A 11 KHFECTECGKAFTRK 25 (46)
T ss_dssp CCEECSSSCCEESCH
T ss_pred CCeECCCCCchhCCH
Confidence 347888887777653
No 360
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.71 E-value=51 Score=20.14 Aligned_cols=38 Identities=5% Similarity=-0.051 Sum_probs=23.7
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh----cCCCCCCCCCccCc
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD----AGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~----~~~~~cp~c~~~~~ 57 (389)
...|.|++|...|.... -+..... ...+.|+.|...+.
T Consensus 7 ~~~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKA-----------ALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHH-----------HHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHH-----------HHHHHHHHcCCCCCEeCCCCCCccC
Confidence 45689999988877642 2233322 23467999987653
No 361
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.67 E-value=59 Score=20.83 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=12.9
Q ss_pred CcCcCCcccCcCC-eecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMKDP-VIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...+.+. ....=|..||+.|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 4555555544331 12223444555554443
No 362
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.66 E-value=61 Score=20.89 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=14.3
Q ss_pred CcCcCCcccCcCCee-cC-CccCccHHHHHHH
Q 016464 12 FRCPISLELMKDPVI-VS-TGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~-~~-c~h~~c~~ci~~~ 41 (389)
|.|..|...|...-. .. =|..||+.|..+.
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 555555555543222 12 2455565555443
No 363
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.64 E-value=48 Score=24.95 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=49.0
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHH-HHHHHHhC---ChHHHHHHHHHHHHHHh
Q 016464 311 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEA-LKELSESG---TDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~-L~~ll~~~---~~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-|.. .++.++..|+.+|-.+..+. ......+.+..++.- |+.++... ...|+.++..++..-+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 56677777774 46777778888888887764 455556666666653 66666532 35799999988887764
No 364
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.47 E-value=42 Score=18.29 Aligned_cols=16 Identities=6% Similarity=0.322 Sum_probs=11.6
Q ss_pred CCCCcCcCCcccCcCC
Q 016464 9 PDDFRCPISLELMKDP 24 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p 24 (389)
...|.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQN 25 (46)
T ss_dssp CSSEECSSSCCEESSS
T ss_pred CCCeECCcCCchhCCH
Confidence 3458888888877764
No 365
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.30 E-value=66 Score=17.39 Aligned_cols=14 Identities=7% Similarity=0.484 Sum_probs=10.1
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2ep0_A 11 KPYKCDVCHKSFRY 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCcccCcccCC
Confidence 44788888877765
No 366
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.24 E-value=1.9e+02 Score=21.34 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=51.2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016464 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
++..+.+.+....+.-+-.++.++..++.+....-......++.+.+.......++.+|.+..+++..=.
T Consensus 44 Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 44 FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5566666777777888888888888888754322345666678888888888888999988887776543
No 367
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=27.05 E-value=67 Score=17.33 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2em9_A 11 KPYNCKECGKSFRWA 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred cCeECCccccccCCh
Confidence 457888888777653
No 368
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.93 E-value=22 Score=16.35 Aligned_cols=12 Identities=8% Similarity=0.520 Sum_probs=6.6
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 456666555543
No 369
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=26.88 E-value=3.7e+02 Score=24.61 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcccccc-ccchhcccCChHHHHHHH-cc-C----CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHH
Q 016464 162 TQEHAVTALLNLSINDS-NKGTIVNAGAIPDIVDVL-KN-G----SMEARENAAATLFSLSVIDENKVAIGAAGAIPALI 234 (389)
Q Consensus 162 ~~~~a~~~L~~l~~~~~-~~~~i~~~g~l~~L~~lL-~~-~----~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~ 234 (389)
+.+.+.--|...+..+. ... ..++.+-++| .+ . +++........+...+..+ .+.+.=-+.-++
T Consensus 52 Lie~~~LnL~~~t~~~~~~~~-----~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd----~VLevysve~i~ 122 (500)
T 3vld_A 52 LLRKCSLNLVTVVSLPDMDVK-----PLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFD----DVLEVYSAEDLV 122 (500)
T ss_dssp HHHHHHHHHHHSCSCCSCCCH-----HHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHH----HHHHHSCHHHHH
T ss_pred HHHHHhhcchhcccCCcccHH-----HHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHH----HHHHhCCHHHHH
Confidence 44455555555554432 111 2456777777 33 1 3444334444444443332 334445678888
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcc---cHHHHHHHHHHHhcChhhHHHhhccCC
Q 016464 235 RLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGG---MVDEALAILAILASHQEGKTAIGQAEP 311 (389)
Q Consensus 235 ~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~i~~~~~ 311 (389)
..|.+++..+...++.++. ....+..+...+++..+++++.+.+.. +...+=.++..|+++.-.|..+.+. .
T Consensus 123 ~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n-n 197 (500)
T 3vld_A 123 KALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN-N 197 (500)
T ss_dssp HHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-T
T ss_pred HHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH-h
Confidence 8998888889889998888 455667788889999999999886655 4455556667777665445555543 3
Q ss_pred hHHHHH
Q 016464 312 IPVLME 317 (389)
Q Consensus 312 v~~L~~ 317 (389)
++.|..
T Consensus 198 l~lL~~ 203 (500)
T 3vld_A 198 LPYLVS 203 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 370
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.77 E-value=27 Score=16.20 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.1
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
+.|+.|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 455555554443
No 371
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.70 E-value=64 Score=17.42 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=10.5
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en8_A 11 KSHTCDECGKNFCYI 25 (46)
T ss_dssp SSEECTTTCCEESSH
T ss_pred CCeECCCcCcccCCH
Confidence 457888887777653
No 372
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.67 E-value=25 Score=22.99 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..|.|++|...|..+..+ ..-+........+.|+.|+..+.
T Consensus 2 k~~~C~~C~k~f~~~~~L-------~~H~~~H~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHL-------TTHIRTHTGEKPFACDICGRKFA 42 (88)
T ss_dssp CCEECTTTCCEESCHHHH-------HHHHHHHHCCCCEECTTTCCEES
T ss_pred CCCcCCCCCCccCCHHHH-------HHHHHHcCCCCCccCCCCCCccC
Confidence 358899998888764322 11122222234568999987664
No 373
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.47 E-value=69 Score=17.30 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=10.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2enc_A 11 KPFKCEECGKGFYTN 25 (46)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcCCCCCCCcCCCh
Confidence 457888888777653
No 374
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.20 E-value=41 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=14.7
Q ss_pred CcCcCCcccCcCCe-ecCCccCccHHHHH
Q 016464 12 FRCPISLELMKDPV-IVSTGQTYERSCIQ 39 (389)
Q Consensus 12 ~~Cpic~~~~~~pv-~~~c~h~~c~~ci~ 39 (389)
|.|..|...|.+.. ...=|..||+.|..
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 56666666554322 22345556666654
No 375
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.07 E-value=84 Score=16.93 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=10.1
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (47)
T 2epx_A 11 KPYECIECGKAFIQ 24 (47)
T ss_dssp CSBCCSSSCCCBSS
T ss_pred CCEECCccCchhCC
Confidence 44788888777765
No 376
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.00 E-value=82 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred CCCCcCcCCcccCc-CCeecCCccCccHH
Q 016464 9 PDDFRCPISLELMK-DPVIVSTGQTYERS 36 (389)
Q Consensus 9 ~~~~~Cpic~~~~~-~pv~~~c~h~~c~~ 36 (389)
.....|..|..-+. -+..-.||.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 34467999986433 25566799999855
No 377
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.96 E-value=23 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCccCccHHHHHHHHhcCCC-CCCCCCccC
Q 016464 28 STGQTYERSCIQKWLDAGHK-TCPKTQQTL 56 (389)
Q Consensus 28 ~c~h~~c~~ci~~~~~~~~~-~cp~c~~~~ 56 (389)
.||+.|.. ..... .||.|+.+.
T Consensus 78 ~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred CCCCEEeC-------CCCCCCcCccccCCC
Confidence 46666643 22356 799998763
No 378
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.95 E-value=41 Score=18.09 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (44)
T 2emx_A 9 KPFGCSCCEKAFSSK 23 (44)
T ss_dssp CCEECSSSSCEESSH
T ss_pred cCccCCCCCcccCCH
Confidence 458888888777654
No 379
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.94 E-value=30 Score=16.21 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=6.7
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 456666555544
No 380
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.90 E-value=72 Score=17.20 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.7
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2yso_A 11 KSHQCRECGEIFFQY 25 (46)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCEEccccChhhCCH
Confidence 357888888777653
No 381
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.91 E-value=60 Score=17.58 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.2
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2en1_A 11 KPFKCEECGKRFTQ 24 (46)
T ss_dssp CSEEETTTTEEESS
T ss_pred CCeeCCCCCcccCC
Confidence 45788888877765
No 382
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.86 E-value=52 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=12.1
Q ss_pred CCCCcCcCCcccCcCC
Q 016464 9 PDDFRCPISLELMKDP 24 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p 24 (389)
...|.|++|...|...
T Consensus 5 ~~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSK 20 (124)
T ss_dssp CSSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCCcCCCH
Confidence 3568899999888653
No 383
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.69 E-value=33 Score=16.21 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=7.3
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 566666665544
No 384
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.63 E-value=25 Score=16.28 Aligned_cols=11 Identities=18% Similarity=0.609 Sum_probs=5.5
Q ss_pred CcCcCCcccCc
Q 016464 12 FRCPISLELMK 22 (389)
Q Consensus 12 ~~Cpic~~~~~ 22 (389)
|.|+.|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 45555555443
No 385
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.45 E-value=70 Score=21.59 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=26.9
Q ss_pred CCCCCcCcCCcccCcCCeec--C--Cc-cCccHHHHHHHHhc---CCCCCCCCCccC
Q 016464 8 IPDDFRCPISLELMKDPVIV--S--TG-QTYERSCIQKWLDA---GHKTCPKTQQTL 56 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~--~--c~-h~~c~~ci~~~~~~---~~~~cp~c~~~~ 56 (389)
..+...| +|++.....++. . |. ..|...|+. +.. +.+.||.|....
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3445678 999866544332 1 33 356666765 222 457899997543
No 386
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.12 E-value=15 Score=22.77 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..|.|++|...|.....+.- ...+.|+.|+..+.
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSC 50 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCS
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhc
Confidence 44899999988876544432 33567887776654
No 387
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.08 E-value=20 Score=25.30 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=10.0
Q ss_pred CCCCCCCCccCcC
Q 016464 46 HKTCPKTQQTLLH 58 (389)
Q Consensus 46 ~~~cp~c~~~~~~ 58 (389)
+..||+|+.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4469999988753
No 388
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.98 E-value=27 Score=17.84 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=9.4
Q ss_pred CCCcCcCCcccCcC
Q 016464 10 DDFRCPISLELMKD 23 (389)
Q Consensus 10 ~~~~Cpic~~~~~~ 23 (389)
..|.|+.|...|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 34778877776654
No 389
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.92 E-value=37 Score=21.63 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=18.1
Q ss_pred CCcCcCCcccCc--CCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 11 DFRCPISLELMK--DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~--~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.-.|+-|++... +.++..-|..|...| +.|-.|+.++.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC---------FVCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT---------CCCTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc---------CeECCCCCCCC
Confidence 345666666553 333333344443333 34555555544
No 390
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.75 E-value=98 Score=19.64 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCCCCCCcCcCCcccCcCCeec--C--Cc-cCccHHHHHHHHhc---CCCCCCCCCccC
Q 016464 6 PVIPDDFRCPISLELMKDPVIV--S--TG-QTYERSCIQKWLDA---GHKTCPKTQQTL 56 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~--~--c~-h~~c~~ci~~~~~~---~~~~cp~c~~~~ 56 (389)
.+..+...| +|++.-...++. . |. ..|...|+. +.. +...||.|....
T Consensus 11 ~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 344456778 899865554432 2 44 467777775 332 457899997543
No 391
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=72 Score=20.38 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=13.1
Q ss_pred CcCcCCcccCcC-CeecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMKD-PVIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...+.. .....=|..||+.|..+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 455555554432 222233444555555443
No 392
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.44 E-value=34 Score=21.61 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh---cCCCCCCCCCccC
Q 016464 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD---AGHKTCPKTQQTL 56 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~---~~~~~cp~c~~~~ 56 (389)
...|.|++|...|.....+. .-+..... ...+.|+.|+..+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~-------~H~~~h~~~~~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLN-------WHQRKHAETVAALRFPCEFCGKRF 48 (78)
T ss_dssp CCCEECSSSCCEESSHHHHH-------HHHHHHHHHTTTCCEECTTTCCEE
T ss_pred CcCeECCCCCCeeCCHHHHH-------HHHHHhhccCCCcccCCCCCCchh
Confidence 34689999998887643221 11222221 2356899998765
No 393
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.39 E-value=46 Score=22.31 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=22.1
Q ss_pred CCCCcCcCCcccCcCCe---e-cCCccCccHHHHHH
Q 016464 9 PDDFRCPISLELMKDPV---I-VSTGQTYERSCIQK 40 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv---~-~~c~h~~c~~ci~~ 40 (389)
.+.-.|..|...|.--. - -.||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45568999998775321 1 36999999988643
No 394
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.19 E-value=53 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=15.4
Q ss_pred CcCcCCcccCcCC-eecCCccCccHHHHHHH
Q 016464 12 FRCPISLELMKDP-VIVSTGQTYERSCIQKW 41 (389)
Q Consensus 12 ~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~ 41 (389)
|.|..|...|.+- ....=|..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 5666666555442 22233455666665544
No 395
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.99 E-value=37 Score=22.49 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=20.7
Q ss_pred CcCcCCcccCcCCe---e-cCCccCccHHHHHH
Q 016464 12 FRCPISLELMKDPV---I-VSTGQTYERSCIQK 40 (389)
Q Consensus 12 ~~Cpic~~~~~~pv---~-~~c~h~~c~~ci~~ 40 (389)
-.|..|...|.--. - -.||+.||..|...
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 57999998775321 1 36999999998654
No 396
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=22.99 E-value=60 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=7.3
Q ss_pred CCCCCCCCCccC
Q 016464 45 GHKTCPKTQQTL 56 (389)
Q Consensus 45 ~~~~cp~c~~~~ 56 (389)
..+.|+.|+..+
T Consensus 99 ~~~~C~~C~k~f 110 (129)
T 2wbt_A 99 HTKVCPVCKKEF 110 (129)
T ss_dssp CCCBCTTTCCBC
T ss_pred CCCCCCCCCccc
Confidence 345677776554
No 397
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.93 E-value=94 Score=20.26 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=11.8
Q ss_pred CCCCcCcCCcccCcC
Q 016464 9 PDDFRCPISLELMKD 23 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~ 23 (389)
...|.|++|...|..
T Consensus 6 ~~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCCBTTTTBCCCC
T ss_pred CcCeECCCCCCccCC
Confidence 456899999988865
No 398
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.41 E-value=18 Score=16.63 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=6.8
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 556666655544
No 399
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.70 E-value=43 Score=21.03 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCCCccC
Q 016464 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTL 56 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~ 56 (389)
..|.|++|...|.....+ ..-+...... ..+.|+.|...+
T Consensus 14 k~~~C~~C~k~f~~~~~L-------~~H~~~~h~~~~~~~~C~~C~~~f 55 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTM-------KMHILQKHTENVAKFHCPHCDTVI 55 (77)
T ss_dssp CSEECTTTCCEESCHHHH-------HHHHHHHSSSSCSSEECSSSSCEE
T ss_pred CCeECCCcCchhCCHHHH-------HHHHHHhcCCCCCccCCCCCCCcc
Confidence 458999998888764221 1111111111 246799998765
No 400
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.59 E-value=37 Score=18.54 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=10.8
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2en6_A 11 KPYGCNECGKTFSQK 25 (46)
T ss_dssp CCEEETTTTEEESSH
T ss_pred cCeECCCCCcccCch
Confidence 457888888777654
No 401
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=22.26 E-value=27 Score=22.32 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCCCCCcCcCCcccC---cCCeec--CCccCccHHHHHHHHh-cCCCCCCCCCc
Q 016464 6 PVIPDDFRCPISLELM---KDPVIV--STGQTYERSCIQKWLD-AGHKTCPKTQQ 54 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~---~~pv~~--~c~h~~c~~ci~~~~~-~~~~~cp~c~~ 54 (389)
.....+..|.+|++.- .+.+++ .|...|-..|+..-.. .+...||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456678899998753 233433 4777888888753221 34567777743
No 402
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.22 E-value=61 Score=21.03 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCCcCcCCcccC-cCCe--ecCCccCccHHHHHHHH
Q 016464 9 PDDFRCPISLELM-KDPV--IVSTGQTYERSCIQKWL 42 (389)
Q Consensus 9 ~~~~~Cpic~~~~-~~pv--~~~c~h~~c~~ci~~~~ 42 (389)
+.+..|.+|.+.- ...+ -+.|...||..|+..+.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H 64 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 64 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhc
Confidence 3467899998643 3333 26799999999998744
No 403
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.18 E-value=84 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=19.8
Q ss_pred CCCCcCcCCcccCcC-CeecCCccCccHH
Q 016464 9 PDDFRCPISLELMKD-PVIVSTGQTYERS 36 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~-pv~~~c~h~~c~~ 36 (389)
+....|..|.+-+.- +..-.||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345689999985433 5556799999854
No 404
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.81 E-value=31 Score=21.85 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=9.4
Q ss_pred CcCcCCcccCcCC
Q 016464 12 FRCPISLELMKDP 24 (389)
Q Consensus 12 ~~Cpic~~~~~~p 24 (389)
|.|++|...+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (82)
T 2kmk_A 2 FDCKICGKSFKRS 14 (82)
T ss_dssp EECSSSCCEESSH
T ss_pred ccCCCCcccccCc
Confidence 6788888777653
No 405
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.73 E-value=36 Score=17.12 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=9.6
Q ss_pred CCCcCcCCcccCcCC
Q 016464 10 DDFRCPISLELMKDP 24 (389)
Q Consensus 10 ~~~~Cpic~~~~~~p 24 (389)
..|.|++|...|..+
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 347777777766543
No 406
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=63 Score=20.83 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=5.6
Q ss_pred cCcCCcccCc
Q 016464 13 RCPISLELMK 22 (389)
Q Consensus 13 ~Cpic~~~~~ 22 (389)
.|+.|.+...
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 4566665554
No 407
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.64 E-value=79 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=25.8
Q ss_pred CcCcCCcccCcC-CeecCCccCccHHHHHHHHhcCCCCCCCCCcc
Q 016464 12 FRCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 12 ~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
|.|..|...|.. .....=|..||+.|..+.+. ..|..|++.
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~---~kc~~C~~~ 184 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG---PKGFGFGQG 184 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC---CCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC---CcCCCCCCc
Confidence 677777776643 22334567788888777653 347677655
No 408
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.58 E-value=25 Score=16.55 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=6.3
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 455555555443
No 409
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.41 E-value=27 Score=16.37 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=7.1
Q ss_pred CcCcCCcccCcC
Q 016464 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 556666665544
No 410
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=21.34 E-value=37 Score=22.06 Aligned_cols=13 Identities=15% Similarity=0.462 Sum_probs=8.0
Q ss_pred CCcCc--CCcccCcC
Q 016464 11 DFRCP--ISLELMKD 23 (389)
Q Consensus 11 ~~~Cp--ic~~~~~~ 23 (389)
.|.|+ .|...|..
T Consensus 4 ~~~C~~~~C~~~f~~ 18 (90)
T 1a1h_A 4 PYACPVESCDRRFSQ 18 (90)
T ss_dssp CEECCSSSCCCEESS
T ss_pred ceECCCCCCCCccCC
Confidence 46776 37666654
No 411
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=21.32 E-value=72 Score=20.43 Aligned_cols=15 Identities=7% Similarity=0.126 Sum_probs=10.6
Q ss_pred CCCCcCcC--CcccCcC
Q 016464 9 PDDFRCPI--SLELMKD 23 (389)
Q Consensus 9 ~~~~~Cpi--c~~~~~~ 23 (389)
+..|.|++ |...+..
T Consensus 3 ~~~~~C~~~~C~~~f~~ 19 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTK 19 (89)
T ss_dssp CCCEECCSTTTCCEESS
T ss_pred CCCeeCCCCCCCCcCCC
Confidence 45678888 8877754
No 412
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.28 E-value=49 Score=19.98 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCCCCCCCCcCcCCcccCc
Q 016464 4 RSPVIPDDFRCPISLELMK 22 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~ 22 (389)
....+-+.+.||.|+..+.
T Consensus 3 ~d~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLE 21 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEE
T ss_pred CCHHHHhheeCCCCCCcce
Confidence 3455778899999998653
No 413
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.18 E-value=32 Score=15.95 Aligned_cols=11 Identities=9% Similarity=0.495 Sum_probs=5.6
Q ss_pred CcCcCCcccCc
Q 016464 12 FRCPISLELMK 22 (389)
Q Consensus 12 ~~Cpic~~~~~ 22 (389)
|.|+.|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 45555555443
No 414
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.91 E-value=1.1e+02 Score=19.14 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=19.9
Q ss_pred CCCCcCcCCcccCc-CCeecCCccCccHH
Q 016464 9 PDDFRCPISLELMK-DPVIVSTGQTYERS 36 (389)
Q Consensus 9 ~~~~~Cpic~~~~~-~pv~~~c~h~~c~~ 36 (389)
.....|..|.+-+. -+..-.||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEeecCCEeccc
Confidence 34578999998543 35556799999855
No 415
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.60 E-value=31 Score=26.98 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=27.7
Q ss_pred CcCcCCcccCcCCe----ec---CCccCccHHHHHH------HHh----cCCCCCCCCCccC
Q 016464 12 FRCPISLELMKDPV----IV---STGQTYERSCIQK------WLD----AGHKTCPKTQQTL 56 (389)
Q Consensus 12 ~~Cpic~~~~~~pv----~~---~c~h~~c~~ci~~------~~~----~~~~~cp~c~~~~ 56 (389)
..||+|...+.+.- .+ .|..-|...|..- -+. .....||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999887642 23 3666666666521 111 0257899997543
No 416
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.51 E-value=52 Score=20.42 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCcCcCCcccCcC--CeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016464 11 DFRCPISLELMKD--PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~--pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.-.|.-|.+.+.. .++..-|..|...| +.|-.|+.++.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C---------F~C~~C~~~L~ 50 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC---------FVCAQCFQQFP 50 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT---------SSCTTTCCCCG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC---------CcccCCCCCCC
Confidence 3467777776652 23333444443333 34666666554
No 417
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.50 E-value=50 Score=21.05 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=13.7
Q ss_pred CCCCCCCCcCcCCcccCc
Q 016464 5 SPVIPDDFRCPISLELMK 22 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~ 22 (389)
...+-+.+.||+|+..+.
T Consensus 2 d~~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 2 ESRLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCCCBCTTTCCBEE
T ss_pred ChHHhhheECCCCCCcCE
Confidence 345778899999998554
No 418
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.74 E-value=22 Score=16.85 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=7.4
Q ss_pred CcCcCCcccCcCC
Q 016464 12 FRCPISLELMKDP 24 (389)
Q Consensus 12 ~~Cpic~~~~~~p 24 (389)
|.|+.|...|..+
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 5566666655443
No 419
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.28 E-value=50 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=19.1
Q ss_pred CcCcCCcccCc--CCeecCCccCccHH
Q 016464 12 FRCPISLELMK--DPVIVSTGQTYERS 36 (389)
Q Consensus 12 ~~Cpic~~~~~--~pv~~~c~h~~c~~ 36 (389)
-.|..|.+-+. .|..-.||.+||..
T Consensus 26 ~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccchhhCCeecccCCeEcCCCCEeccc
Confidence 57999997433 47777899999865
No 420
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.12 E-value=1.8e+02 Score=21.75 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=50.9
Q ss_pred chhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhh-hHHHHhcCCHH-HHHHHhcCC---ChHHHHHHHHHHHhccc
Q 016464 102 DRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIP-LLVELLSST---DPRTQEHAVTALLNLSI 175 (389)
Q Consensus 102 ~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~-~L~~lL~~~---~~~~~~~a~~~L~~l~~ 175 (389)
..+++..+.+.|++ .++.++..|+..|-.+....... ...+....++. .|++++... +..++..++.+|..-+.
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 35688889999985 57888889999998888755433 33444444554 366666532 45788899888877654
No 421
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.07 E-value=29 Score=22.95 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.3
Q ss_pred CCCCcCcCCcccCcCC
Q 016464 9 PDDFRCPISLELMKDP 24 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~p 24 (389)
...|.|++|...|...
T Consensus 5 ~~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 5 SSGVACEICGKIFRDV 20 (95)
T ss_dssp CSCEECSSSCCEESSS
T ss_pred CCCeECCCCCCccCCh
Confidence 4568899999888764
Done!