Query 016465
Match_columns 389
No_of_seqs 390 out of 2481
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 7E-33 1.5E-37 248.7 24.0 282 101-382 106-394 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.6E-31 5.7E-36 222.1 16.2 281 100-381 110-398 (526)
3 KOG0166 Karyopherin (importin) 100.0 8.4E-30 1.8E-34 228.9 24.5 288 98-385 146-440 (514)
4 KOG4224 Armadillo repeat prote 100.0 5.5E-30 1.2E-34 216.0 19.5 285 100-385 122-409 (550)
5 PLN03200 cellulose synthase-in 100.0 6.1E-29 1.3E-33 254.6 29.5 285 99-384 441-767 (2102)
6 KOG4224 Armadillo repeat prote 100.0 1.1E-29 2.3E-34 214.3 19.4 285 96-382 159-447 (550)
7 PLN03200 cellulose synthase-in 100.0 3.9E-28 8.5E-33 248.7 29.6 286 100-385 400-727 (2102)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.9E-28 4.2E-33 205.0 19.2 284 99-384 152-446 (526)
9 PF05804 KAP: Kinesin-associat 99.9 8.8E-21 1.9E-25 180.4 26.1 277 99-383 285-566 (708)
10 PF05804 KAP: Kinesin-associat 99.9 7.3E-20 1.6E-24 174.2 26.9 265 107-380 253-519 (708)
11 KOG1048 Neural adherens juncti 99.8 7.7E-18 1.7E-22 156.9 25.4 282 104-386 233-689 (717)
12 KOG4199 Uncharacterized conser 99.8 2.3E-17 5E-22 138.7 25.6 279 101-380 142-443 (461)
13 KOG2122 Beta-catenin-binding p 99.8 3.8E-18 8.3E-23 165.9 17.9 260 123-383 317-603 (2195)
14 PF04564 U-box: U-box domain; 99.8 1.9E-19 4.2E-24 122.1 4.9 72 8-79 1-72 (73)
15 KOG4199 Uncharacterized conser 99.8 7.3E-16 1.6E-20 129.8 23.1 267 111-381 114-403 (461)
16 PF04826 Arm_2: Armadillo-like 99.7 2.7E-16 5.9E-21 133.2 19.8 226 143-372 9-253 (254)
17 PF04826 Arm_2: Armadillo-like 99.7 9.1E-16 2E-20 130.0 19.8 194 101-299 9-206 (254)
18 PF10508 Proteasom_PSMB: Prote 99.7 1.2E-14 2.5E-19 137.2 26.9 279 102-381 75-366 (503)
19 smart00504 Ubox Modified RING 99.6 2.9E-16 6.3E-21 104.4 5.3 63 11-74 1-63 (63)
20 KOG4500 Rho/Rac GTPase guanine 99.6 4.2E-14 9E-19 123.0 18.3 279 101-380 84-389 (604)
21 PF10508 Proteasom_PSMB: Prote 99.6 1.1E-12 2.5E-17 123.8 26.4 282 101-383 116-422 (503)
22 PRK09687 putative lyase; Provi 99.6 1.8E-13 3.9E-18 118.9 18.1 225 103-378 53-279 (280)
23 PRK09687 putative lyase; Provi 99.6 2.2E-13 4.8E-18 118.2 17.3 227 105-382 24-251 (280)
24 KOG2122 Beta-catenin-binding p 99.6 9.6E-14 2.1E-18 136.0 16.0 242 101-342 336-604 (2195)
25 cd00256 VATPase_H VATPase_H, r 99.5 5.7E-12 1.2E-16 113.8 21.6 276 105-380 102-424 (429)
26 KOG1222 Kinesin associated pro 99.5 3.9E-11 8.4E-16 106.3 25.4 282 100-384 300-666 (791)
27 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.9E-17 99.5 13.9 118 264-381 2-120 (120)
28 PF15227 zf-C3HC4_4: zinc fing 99.5 2.4E-14 5.1E-19 85.0 2.9 39 14-52 1-42 (42)
29 KOG1048 Neural adherens juncti 99.4 4E-12 8.6E-17 119.3 16.7 237 147-383 234-597 (717)
30 cd00020 ARM Armadillo/beta-cat 99.4 2.1E-12 4.5E-17 98.4 12.0 117 141-257 2-120 (120)
31 KOG4500 Rho/Rac GTPase guanine 99.4 3.5E-11 7.6E-16 105.1 20.6 284 101-385 220-523 (604)
32 KOG1222 Kinesin associated pro 99.4 1.1E-10 2.5E-15 103.4 20.5 254 118-379 277-532 (791)
33 PRK13800 putative oxidoreducta 99.4 2E-10 4.4E-15 116.3 23.4 93 102-214 619-711 (897)
34 PLN03208 E3 ubiquitin-protein 99.3 6.4E-13 1.4E-17 104.8 4.1 59 7-65 14-87 (193)
35 PRK13800 putative oxidoreducta 99.3 2.2E-10 4.8E-15 116.0 22.4 216 102-379 650-865 (897)
36 PF03224 V-ATPase_H_N: V-ATPas 99.3 3.8E-11 8.2E-16 107.0 15.0 230 147-376 56-309 (312)
37 KOG0168 Putative ubiquitin fus 99.3 5.3E-10 1.1E-14 105.3 21.3 259 102-364 165-438 (1051)
38 KOG2759 Vacuolar H+-ATPase V1 99.3 9.6E-10 2.1E-14 96.2 21.5 275 106-381 116-438 (442)
39 TIGR00599 rad18 DNA repair pro 99.3 4.5E-12 9.8E-17 112.8 6.4 70 6-76 21-90 (397)
40 PF03224 V-ATPase_H_N: V-ATPas 99.2 5.2E-10 1.1E-14 99.7 16.0 223 106-328 57-303 (312)
41 PF13923 zf-C3HC4_2: Zinc fing 99.2 9.3E-12 2E-16 73.2 2.6 38 14-52 1-39 (39)
42 KOG0823 Predicted E3 ubiquitin 99.2 1.3E-11 2.9E-16 99.0 2.8 57 9-65 45-103 (230)
43 PF01602 Adaptin_N: Adaptin N 99.2 3.9E-09 8.5E-14 101.9 20.2 256 105-385 80-337 (526)
44 KOG2023 Nuclear transport rece 99.1 1.2E-09 2.5E-14 100.5 14.6 270 103-382 127-464 (885)
45 KOG0946 ER-Golgi vesicle-tethe 99.1 6E-08 1.3E-12 91.2 25.8 277 102-382 20-347 (970)
46 KOG2160 Armadillo/beta-catenin 99.1 1.5E-08 3.2E-13 87.7 19.7 186 115-301 94-285 (342)
47 KOG2160 Armadillo/beta-catenin 99.1 1.2E-08 2.5E-13 88.4 18.6 181 199-379 95-280 (342)
48 PF13445 zf-RING_UBOX: RING-ty 99.1 3.2E-11 7E-16 71.2 1.9 36 14-50 1-43 (43)
49 KOG3678 SARM protein (with ste 99.1 6.2E-09 1.4E-13 92.3 16.2 270 100-382 176-453 (832)
50 PF00097 zf-C3HC4: Zinc finger 99.1 1.1E-10 2.3E-15 69.8 2.9 39 14-52 1-41 (41)
51 KOG0317 Predicted E3 ubiquitin 99.1 1.3E-10 2.8E-15 96.3 3.9 54 7-61 235-288 (293)
52 PF14835 zf-RING_6: zf-RING of 99.0 7.5E-11 1.6E-15 74.2 1.6 60 9-71 5-65 (65)
53 PF01602 Adaptin_N: Adaptin N 99.0 2.2E-08 4.7E-13 96.7 18.9 255 104-383 114-371 (526)
54 KOG0287 Postreplication repair 99.0 1.1E-10 2.4E-15 98.1 1.9 66 10-76 22-87 (442)
55 KOG1293 Proteins containing ar 99.0 7.8E-08 1.7E-12 88.9 19.3 114 267-380 417-532 (678)
56 KOG0946 ER-Golgi vesicle-tethe 99.0 3.7E-07 8.1E-12 86.0 23.9 278 102-379 59-397 (970)
57 PF13920 zf-C3HC4_3: Zinc fing 99.0 3.8E-10 8.3E-15 70.5 2.8 47 10-57 1-48 (50)
58 KOG1293 Proteins containing ar 99.0 1.6E-07 3.4E-12 87.0 20.6 281 100-380 47-489 (678)
59 KOG2973 Uncharacterized conser 98.9 2.9E-07 6.3E-12 77.7 19.9 269 106-381 5-315 (353)
60 PHA02929 N1R/p28-like protein; 98.9 6.9E-10 1.5E-14 92.0 4.3 49 8-57 171-227 (238)
61 PF13639 zf-RING_2: Ring finge 98.9 4.2E-10 9.1E-15 68.2 1.5 40 13-53 2-44 (44)
62 PTZ00429 beta-adaptin; Provisi 98.9 4.7E-07 1E-11 88.6 23.1 258 104-381 68-326 (746)
63 KOG0320 Predicted E3 ubiquitin 98.9 1.1E-09 2.4E-14 84.0 3.3 52 9-61 129-182 (187)
64 KOG0168 Putative ubiquitin fus 98.9 9.4E-08 2E-12 90.6 15.8 218 102-321 209-437 (1051)
65 cd00256 VATPase_H VATPase_H, r 98.9 9.8E-07 2.1E-11 80.3 21.9 236 146-381 53-308 (429)
66 KOG2171 Karyopherin (importin) 98.9 6.7E-07 1.5E-11 88.0 21.6 275 105-382 160-505 (1075)
67 cd00162 RING RING-finger (Real 98.8 3E-09 6.5E-14 65.2 3.7 43 13-55 1-44 (45)
68 KOG4646 Uncharacterized conser 98.8 8.1E-08 1.8E-12 70.8 11.3 133 100-233 12-146 (173)
69 COG5432 RAD18 RING-finger-cont 98.8 2.2E-09 4.7E-14 88.5 3.2 63 11-74 25-87 (391)
70 KOG1517 Guanine nucleotide bin 98.8 2.1E-07 4.6E-12 90.1 16.6 240 104-345 472-738 (1387)
71 KOG2171 Karyopherin (importin) 98.8 5.3E-07 1.2E-11 88.7 19.3 274 103-381 117-418 (1075)
72 KOG4646 Uncharacterized conser 98.8 4.2E-08 9.2E-13 72.3 8.8 153 228-380 16-169 (173)
73 KOG4413 26S proteasome regulat 98.8 1.1E-06 2.5E-11 74.9 18.1 276 104-380 82-376 (524)
74 PF11789 zf-Nse: Zinc-finger o 98.8 3E-09 6.5E-14 67.4 2.0 44 10-53 10-55 (57)
75 smart00184 RING Ring finger. E 98.7 9.4E-09 2E-13 60.7 3.5 39 14-52 1-39 (39)
76 PF14664 RICTOR_N: Rapamycin-i 98.7 1.5E-05 3.2E-10 72.2 24.7 273 105-381 26-364 (371)
77 TIGR02270 conserved hypothetic 98.7 2.5E-06 5.5E-11 78.0 19.6 221 103-381 53-296 (410)
78 PHA02926 zinc finger-like prot 98.7 1.3E-08 2.8E-13 81.3 3.7 50 8-57 167-230 (242)
79 COG5222 Uncharacterized conser 98.7 2.4E-08 5.2E-13 82.8 5.3 65 12-76 275-341 (427)
80 KOG2023 Nuclear transport rece 98.7 5.5E-07 1.2E-11 83.5 14.3 266 104-381 174-505 (885)
81 PTZ00429 beta-adaptin; Provisi 98.7 9.3E-06 2E-10 79.7 23.3 255 103-381 31-285 (746)
82 TIGR00570 cdk7 CDK-activating 98.7 3.8E-08 8.3E-13 84.1 5.9 61 10-70 2-71 (309)
83 KOG0311 Predicted E3 ubiquitin 98.7 2.5E-09 5.3E-14 91.1 -1.4 70 7-76 39-110 (381)
84 PF05536 Neurochondrin: Neuroc 98.6 5.1E-06 1.1E-10 79.1 20.2 236 103-339 4-261 (543)
85 PF14634 zf-RING_5: zinc-RING 98.6 2.5E-08 5.4E-13 60.2 3.0 41 13-54 1-44 (44)
86 KOG2177 Predicted E3 ubiquitin 98.6 2.8E-08 6.1E-13 90.8 4.8 70 6-78 8-77 (386)
87 KOG2759 Vacuolar H+-ATPase V1 98.6 6.8E-06 1.5E-10 72.6 17.7 230 109-340 161-439 (442)
88 TIGR02270 conserved hypothetic 98.6 7.5E-06 1.6E-10 75.0 18.9 191 147-382 55-268 (410)
89 COG5231 VMA13 Vacuolar H+-ATPa 98.6 2.4E-06 5.2E-11 72.6 14.0 228 154-381 157-428 (432)
90 KOG2734 Uncharacterized conser 98.6 4E-05 8.6E-10 68.2 22.0 240 100-340 121-401 (536)
91 COG5574 PEX10 RING-finger-cont 98.6 3.8E-08 8.2E-13 80.8 3.2 52 9-60 213-265 (271)
92 KOG2660 Locus-specific chromos 98.5 2.7E-08 5.8E-13 84.4 1.8 64 7-71 11-79 (331)
93 COG1413 FOG: HEAT repeat [Ener 98.5 1.6E-05 3.5E-10 72.0 19.9 187 104-339 43-242 (335)
94 PF05536 Neurochondrin: Neuroc 98.5 1.4E-05 2.9E-10 76.3 19.7 235 147-382 6-262 (543)
95 KOG0212 Uncharacterized conser 98.5 9.1E-06 2E-10 74.2 17.1 272 103-381 166-444 (675)
96 KOG2973 Uncharacterized conser 98.5 1.9E-05 4.1E-10 67.0 17.8 227 149-382 6-274 (353)
97 KOG2164 Predicted E3 ubiquitin 98.5 1.2E-07 2.5E-12 85.4 3.4 69 11-79 186-262 (513)
98 KOG1242 Protein containing ada 98.4 3.5E-05 7.5E-10 71.6 19.2 267 103-379 133-442 (569)
99 PF14664 RICTOR_N: Rapamycin-i 98.4 3.2E-05 6.9E-10 70.1 18.1 250 131-383 10-271 (371)
100 COG5369 Uncharacterized conser 98.4 4.3E-06 9.4E-11 75.9 11.8 260 121-380 406-740 (743)
101 KOG2734 Uncharacterized conser 98.4 0.00016 3.4E-09 64.5 20.6 238 123-362 103-371 (536)
102 KOG0212 Uncharacterized conser 98.4 1.3E-05 2.9E-10 73.2 14.2 235 103-340 207-445 (675)
103 PF12678 zf-rbx1: RING-H2 zinc 98.4 4.2E-07 9.2E-12 61.4 3.5 40 13-53 21-73 (73)
104 KOG4413 26S proteasome regulat 98.3 0.00034 7.3E-09 60.2 21.4 279 101-380 125-438 (524)
105 KOG3678 SARM protein (with ste 98.3 9.1E-06 2E-10 72.7 12.1 181 180-363 173-359 (832)
106 KOG0978 E3 ubiquitin ligase in 98.3 1.9E-07 4.2E-12 88.3 1.5 53 10-62 642-694 (698)
107 KOG1789 Endocytosis protein RM 98.3 0.00069 1.5E-08 66.8 24.4 272 107-381 1774-2166(2235)
108 COG1413 FOG: HEAT repeat [Ener 98.3 5.6E-05 1.2E-09 68.5 16.1 185 146-379 43-240 (335)
109 KOG1241 Karyopherin (importin) 98.2 0.00014 3E-09 69.1 18.5 273 104-384 129-438 (859)
110 PF12348 CLASP_N: CLASP N term 98.2 7E-06 1.5E-10 70.0 9.1 184 114-301 17-209 (228)
111 PF00514 Arm: Armadillo/beta-c 98.2 2.2E-06 4.8E-11 50.9 3.9 40 135-174 1-40 (41)
112 PF12348 CLASP_N: CLASP N term 98.2 1.1E-05 2.3E-10 68.9 9.2 182 197-382 17-207 (228)
113 KOG0297 TNF receptor-associate 98.2 1.5E-06 3.3E-11 79.2 4.1 69 5-74 15-85 (391)
114 KOG4159 Predicted E3 ubiquitin 98.1 1.7E-06 3.8E-11 77.6 3.6 74 3-77 76-154 (398)
115 KOG1062 Vesicle coat complex A 98.1 0.00029 6.3E-09 67.4 18.2 254 108-381 111-414 (866)
116 PF13646 HEAT_2: HEAT repeats; 98.1 2E-05 4.4E-10 55.9 8.5 86 148-253 1-88 (88)
117 KOG2259 Uncharacterized conser 98.1 4.2E-05 9E-10 71.3 12.0 254 103-379 197-473 (823)
118 PF13646 HEAT_2: HEAT repeats; 98.1 1.3E-05 2.8E-10 56.9 7.0 86 106-212 1-88 (88)
119 PF10165 Ric8: Guanine nucleot 98.1 0.00054 1.2E-08 64.1 19.4 258 125-383 2-339 (446)
120 KOG1059 Vesicle coat complex A 98.1 0.0025 5.4E-08 60.6 23.2 219 102-340 142-366 (877)
121 KOG0213 Splicing factor 3b, su 98.1 0.00012 2.6E-09 69.3 14.0 152 228-381 799-954 (1172)
122 COG5181 HSH155 U2 snRNP splice 98.1 0.00027 5.8E-09 65.7 15.9 234 101-341 601-872 (975)
123 KOG1242 Protein containing ada 98.1 0.00036 7.8E-09 65.1 16.8 223 105-340 217-445 (569)
124 KOG4628 Predicted E3 ubiquitin 98.0 3.2E-06 6.9E-11 73.9 3.2 47 12-58 230-279 (348)
125 PF00514 Arm: Armadillo/beta-c 98.0 1.3E-05 2.8E-10 47.6 4.9 41 341-381 1-41 (41)
126 KOG1062 Vesicle coat complex A 98.0 0.0013 2.8E-08 63.2 20.2 259 103-382 141-453 (866)
127 COG5369 Uncharacterized conser 98.0 0.00017 3.7E-09 65.9 13.6 196 166-361 409-617 (743)
128 KOG4642 Chaperone-dependent E3 98.0 5.7E-06 1.2E-10 67.6 3.8 78 4-81 204-281 (284)
129 KOG1241 Karyopherin (importin) 98.0 0.00037 8E-09 66.3 16.0 272 103-380 318-625 (859)
130 KOG2879 Predicted E3 ubiquitin 98.0 7E-06 1.5E-10 67.9 3.9 51 7-57 235-287 (298)
131 PF10165 Ric8: Guanine nucleot 98.0 0.0016 3.4E-08 61.0 19.8 243 100-342 18-340 (446)
132 KOG1824 TATA-binding protein-i 97.9 0.00038 8.3E-09 67.8 15.4 233 108-344 9-291 (1233)
133 COG5240 SEC21 Vesicle coat com 97.9 0.0033 7.1E-08 58.3 20.6 262 107-385 267-559 (898)
134 KOG0213 Splicing factor 3b, su 97.9 0.001 2.3E-08 63.2 17.9 232 103-341 798-1067(1172)
135 KOG1061 Vesicle coat complex A 97.9 0.00028 6E-09 67.4 14.3 264 103-380 120-414 (734)
136 COG5243 HRD1 HRD ubiquitin lig 97.9 5.4E-06 1.2E-10 71.4 2.8 48 9-57 285-345 (491)
137 KOG1059 Vesicle coat complex A 97.9 0.0037 7.9E-08 59.5 20.2 217 104-340 181-402 (877)
138 KOG0802 E3 ubiquitin ligase [P 97.8 6.5E-06 1.4E-10 78.9 1.9 47 9-56 289-340 (543)
139 KOG1789 Endocytosis protein RM 97.8 0.0017 3.6E-08 64.3 17.6 264 118-382 1739-2077(2235)
140 KOG0824 Predicted E3 ubiquitin 97.8 8.3E-06 1.8E-10 68.5 2.0 49 11-59 7-55 (324)
141 COG5215 KAP95 Karyopherin (imp 97.8 0.003 6.6E-08 58.5 18.3 271 104-382 133-438 (858)
142 PF11841 DUF3361: Domain of un 97.8 0.00081 1.8E-08 52.3 12.7 120 222-341 5-133 (160)
143 KOG1061 Vesicle coat complex A 97.8 0.00033 7.1E-09 66.9 12.4 252 103-373 48-300 (734)
144 KOG1517 Guanine nucleotide bin 97.8 0.00088 1.9E-08 66.0 15.4 219 163-381 487-732 (1387)
145 PF12861 zf-Apc11: Anaphase-pr 97.7 4.2E-05 9.2E-10 52.0 3.7 45 13-57 34-82 (85)
146 KOG1077 Vesicle coat complex A 97.7 0.01 2.2E-07 56.5 20.1 253 111-379 153-431 (938)
147 KOG1824 TATA-binding protein-i 97.7 0.0059 1.3E-07 59.9 19.0 216 102-340 855-1096(1233)
148 KOG1077 Vesicle coat complex A 97.7 0.0037 8.1E-08 59.3 17.0 267 105-384 112-401 (938)
149 PF13513 HEAT_EZ: HEAT-like re 97.7 0.00015 3.3E-09 46.2 5.5 55 201-255 1-55 (55)
150 KOG1002 Nucleotide excision re 97.6 2.2E-05 4.7E-10 70.9 1.8 50 10-59 535-588 (791)
151 KOG1813 Predicted E3 ubiquitin 97.6 2.9E-05 6.4E-10 65.1 2.4 46 11-57 241-286 (313)
152 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0044 9.6E-08 53.3 15.2 223 115-338 160-427 (432)
153 COG5152 Uncharacterized conser 97.6 2.1E-05 4.5E-10 61.6 1.2 45 12-57 197-241 (259)
154 KOG1060 Vesicle coat complex A 97.6 0.023 5.1E-07 54.8 21.0 135 106-256 37-171 (968)
155 KOG0567 HEAT repeat-containing 97.6 0.0054 1.2E-07 51.4 14.9 195 145-380 66-279 (289)
156 KOG2259 Uncharacterized conser 97.6 0.00041 8.8E-09 65.0 9.3 184 105-297 235-474 (823)
157 smart00185 ARM Armadillo/beta- 97.6 0.00019 4.1E-09 42.4 4.9 38 137-174 3-40 (41)
158 KOG0567 HEAT repeat-containing 97.6 0.0078 1.7E-07 50.5 15.5 199 100-339 63-280 (289)
159 KOG0804 Cytoplasmic Zn-finger 97.6 4.8E-05 1E-09 67.6 2.7 51 4-57 168-222 (493)
160 PF08569 Mo25: Mo25-like; Int 97.5 0.0072 1.6E-07 54.0 16.3 236 141-380 71-331 (335)
161 KOG3036 Protein involved in ce 97.5 0.038 8.3E-07 45.9 20.7 232 106-339 28-291 (293)
162 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00012 2.7E-09 46.6 3.6 55 160-214 1-55 (55)
163 PF09759 Atx10homo_assoc: Spin 97.5 0.00094 2E-08 47.9 8.2 67 285-351 2-71 (102)
164 KOG3036 Protein involved in ce 97.5 0.0086 1.9E-07 49.6 14.2 177 120-297 95-290 (293)
165 KOG1248 Uncharacterized conser 97.4 0.025 5.4E-07 57.1 19.9 218 157-383 665-900 (1176)
166 COG5096 Vesicle coat complex, 97.4 0.024 5.2E-07 55.5 19.1 142 104-258 55-196 (757)
167 PF04063 DUF383: Domain of unk 97.4 0.0015 3.3E-08 53.2 9.5 124 239-362 6-157 (192)
168 KOG4367 Predicted Zn-finger pr 97.4 5.9E-05 1.3E-09 66.5 1.3 37 8-44 1-37 (699)
169 KOG4151 Myosin assembly protei 97.4 0.012 2.6E-07 56.9 16.4 243 135-382 493-742 (748)
170 smart00185 ARM Armadillo/beta- 97.4 0.00051 1.1E-08 40.5 4.7 39 301-339 3-41 (41)
171 PF11841 DUF3361: Domain of un 97.3 0.0077 1.7E-07 46.9 12.0 118 263-380 5-130 (160)
172 KOG1240 Protein kinase contain 97.3 0.014 2.9E-07 59.0 16.3 251 118-381 437-725 (1431)
173 KOG1078 Vesicle coat complex C 97.3 0.041 8.9E-07 53.2 18.9 263 104-385 245-536 (865)
174 KOG0826 Predicted E3 ubiquitin 97.3 0.0002 4.3E-09 61.1 3.3 50 7-57 296-346 (357)
175 PF04078 Rcd1: Cell differenti 97.3 0.0024 5.3E-08 53.8 9.6 219 117-337 8-260 (262)
176 KOG4151 Myosin assembly protei 97.3 0.0066 1.4E-07 58.6 13.5 201 174-379 491-697 (748)
177 KOG0211 Protein phosphatase 2A 97.3 0.0073 1.6E-07 59.4 14.0 266 106-379 239-506 (759)
178 COG5181 HSH155 U2 snRNP splice 97.3 0.00097 2.1E-08 62.1 7.5 151 147-299 605-760 (975)
179 PF11698 V-ATPase_H_C: V-ATPas 97.3 0.0014 3E-08 48.3 6.9 72 102-173 41-113 (119)
180 COG5096 Vesicle coat complex, 97.2 0.042 9.2E-07 53.9 18.5 168 113-299 28-196 (757)
181 KOG1734 Predicted RING-contain 97.2 9.4E-05 2E-09 61.1 0.3 52 10-61 223-285 (328)
182 PF13764 E3_UbLigase_R4: E3 ub 97.2 0.057 1.2E-06 53.8 18.8 241 142-384 113-409 (802)
183 PF08569 Mo25: Mo25-like; Int 97.1 0.013 2.7E-07 52.5 13.1 199 102-302 74-287 (335)
184 KOG2274 Predicted importin 9 [ 97.1 0.064 1.4E-06 52.8 18.4 225 115-346 461-696 (1005)
185 PF05004 IFRD: Interferon-rela 97.1 0.052 1.1E-06 48.3 16.8 193 189-383 45-259 (309)
186 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0035 7.5E-08 45.0 7.6 92 286-379 3-95 (97)
187 COG5215 KAP95 Karyopherin (imp 97.1 0.11 2.3E-06 48.7 18.2 268 111-382 373-669 (858)
188 PF04078 Rcd1: Cell differenti 97.0 0.044 9.5E-07 46.4 14.5 144 241-384 8-171 (262)
189 KOG4653 Uncharacterized conser 97.0 0.012 2.6E-07 57.3 12.6 219 154-379 735-962 (982)
190 COG5240 SEC21 Vesicle coat com 97.0 0.089 1.9E-06 49.3 17.4 220 105-346 224-449 (898)
191 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0027 5.9E-08 45.5 6.1 68 227-295 26-93 (97)
192 PF08045 CDC14: Cell division 97.0 0.02 4.2E-07 48.7 12.2 95 286-380 108-206 (257)
193 KOG3039 Uncharacterized conser 97.0 0.00058 1.3E-08 55.7 2.7 53 10-63 220-276 (303)
194 PF12717 Cnd1: non-SMC mitotic 96.9 0.073 1.6E-06 43.3 14.9 93 117-217 1-93 (178)
195 KOG2042 Ubiquitin fusion degra 96.9 0.0014 3.1E-08 64.8 5.5 72 7-79 866-938 (943)
196 KOG1240 Protein kinase contain 96.9 0.0078 1.7E-07 60.6 10.4 231 104-339 462-725 (1431)
197 KOG3800 Predicted E3 ubiquitin 96.9 0.00089 1.9E-08 56.4 3.4 49 13-61 2-55 (300)
198 PF09759 Atx10homo_assoc: Spin 96.9 0.0031 6.8E-08 45.2 5.7 65 121-185 3-70 (102)
199 KOG1039 Predicted E3 ubiquitin 96.9 0.00056 1.2E-08 60.4 2.3 49 9-57 159-221 (344)
200 KOG2999 Regulator of Rac1, req 96.9 0.075 1.6E-06 49.4 15.5 154 187-340 83-243 (713)
201 PF12719 Cnd3: Nuclear condens 96.8 0.12 2.6E-06 46.0 16.5 170 104-281 26-209 (298)
202 KOG0289 mRNA splicing factor [ 96.8 0.0052 1.1E-07 54.8 7.5 51 12-63 1-52 (506)
203 KOG4172 Predicted E3 ubiquitin 96.8 0.0003 6.5E-09 42.6 -0.0 45 12-56 8-53 (62)
204 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0038 8.2E-08 46.1 5.5 71 311-381 44-115 (119)
205 KOG0211 Protein phosphatase 2A 96.8 0.057 1.2E-06 53.4 15.1 231 142-381 394-625 (759)
206 PF04063 DUF383: Domain of unk 96.8 0.011 2.4E-07 48.3 8.7 112 198-309 6-143 (192)
207 PF05004 IFRD: Interferon-rela 96.7 0.097 2.1E-06 46.6 15.3 185 153-339 50-257 (309)
208 PF12717 Cnd1: non-SMC mitotic 96.7 0.06 1.3E-06 43.7 13.0 93 200-299 1-93 (178)
209 KOG2611 Neurochondrin/leucine- 96.7 0.1 2.2E-06 47.8 15.0 186 109-298 16-225 (698)
210 KOG0915 Uncharacterized conser 96.7 0.057 1.2E-06 56.0 14.8 154 228-383 998-1162(1702)
211 KOG1943 Beta-tubulin folding c 96.7 0.16 3.5E-06 51.1 17.3 245 104-371 341-601 (1133)
212 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0015 3.2E-08 56.5 3.1 52 8-61 110-165 (260)
213 KOG4653 Uncharacterized conser 96.6 0.091 2E-06 51.5 14.8 190 100-298 723-918 (982)
214 PF14570 zf-RING_4: RING/Ubox 96.6 0.0021 4.6E-08 38.6 2.6 43 14-56 1-47 (48)
215 KOG1645 RING-finger-containing 96.6 0.0011 2.4E-08 58.5 1.9 58 11-68 4-67 (463)
216 KOG2817 Predicted E3 ubiquitin 96.6 0.0016 3.5E-08 57.5 2.7 48 9-56 332-384 (394)
217 smart00744 RINGv The RING-vari 96.5 0.0035 7.6E-08 38.5 3.3 41 13-53 1-49 (49)
218 PF14447 Prok-RING_4: Prokaryo 96.5 0.0015 3.2E-08 40.2 1.4 47 10-59 6-52 (55)
219 PF11701 UNC45-central: Myosin 96.5 0.014 3E-07 46.3 7.3 145 188-336 4-156 (157)
220 PF06025 DUF913: Domain of Unk 96.4 0.26 5.7E-06 45.1 16.3 218 123-350 3-243 (379)
221 KOG1060 Vesicle coat complex A 96.4 0.12 2.5E-06 50.3 14.2 209 148-382 37-247 (968)
222 PF14668 RICTOR_V: Rapamycin-i 96.4 0.02 4.4E-07 38.3 6.4 66 245-310 4-70 (73)
223 PF11793 FANCL_C: FANCL C-term 96.3 0.00093 2E-08 44.6 -0.1 47 11-57 2-66 (70)
224 KOG1058 Vesicle coat complex C 96.3 0.25 5.3E-06 47.9 15.3 181 105-299 135-347 (948)
225 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.3 2.8E-05 44.6 21.0 237 100-339 113-406 (802)
226 KOG2956 CLIP-associating prote 96.3 0.23 5E-06 45.4 14.4 186 102-298 284-477 (516)
227 PF12719 Cnd3: Nuclear condens 96.2 0.054 1.2E-06 48.1 10.7 169 147-322 27-209 (298)
228 COG5194 APC11 Component of SCF 96.2 0.0053 1.1E-07 40.6 2.9 45 12-57 32-81 (88)
229 KOG2274 Predicted importin 9 [ 96.2 0.12 2.5E-06 51.0 13.0 220 158-382 462-690 (1005)
230 KOG1493 Anaphase-promoting com 96.2 0.002 4.3E-08 42.2 0.9 48 10-57 30-81 (84)
231 KOG2032 Uncharacterized conser 96.2 0.33 7.1E-06 44.8 15.0 260 105-381 259-531 (533)
232 KOG1248 Uncharacterized conser 96.1 0.25 5.4E-06 50.3 15.3 222 114-340 664-899 (1176)
233 PF12460 MMS19_C: RNAPII trans 96.1 1.2 2.6E-05 41.7 19.6 187 188-383 190-396 (415)
234 KOG3039 Uncharacterized conser 96.1 0.0045 9.8E-08 50.7 2.7 39 5-43 37-75 (303)
235 PF07814 WAPL: Wings apart-lik 96.1 0.4 8.6E-06 43.8 15.5 273 104-384 21-358 (361)
236 KOG2611 Neurochondrin/leucine- 96.0 0.75 1.6E-05 42.4 16.5 133 189-323 13-165 (698)
237 KOG4265 Predicted E3 ubiquitin 96.0 0.004 8.7E-08 54.3 2.0 46 11-57 290-336 (349)
238 PF02985 HEAT: HEAT repeat; I 96.0 0.017 3.8E-07 31.5 3.9 30 353-382 1-30 (31)
239 PF06025 DUF913: Domain of Unk 95.9 0.25 5.4E-06 45.3 13.5 99 142-240 101-208 (379)
240 KOG3161 Predicted E3 ubiquitin 95.9 0.0032 7E-08 58.8 1.2 45 3-50 3-51 (861)
241 KOG1058 Vesicle coat complex C 95.9 0.18 3.9E-06 48.8 12.6 91 111-212 106-197 (948)
242 KOG1571 Predicted E3 ubiquitin 95.9 0.0041 9E-08 54.3 1.7 48 5-56 299-346 (355)
243 KOG1788 Uncharacterized conser 95.9 0.49 1.1E-05 47.8 15.6 255 124-383 662-984 (2799)
244 KOG0825 PHD Zn-finger protein 95.9 0.0017 3.7E-08 61.9 -0.7 46 12-58 124-172 (1134)
245 PF12460 MMS19_C: RNAPII trans 95.8 0.21 4.6E-06 46.7 13.0 192 104-300 189-396 (415)
246 PF12031 DUF3518: Domain of un 95.8 0.063 1.4E-06 44.7 8.2 86 284-369 139-233 (257)
247 KOG4185 Predicted E3 ubiquitin 95.8 0.0094 2E-07 52.9 3.8 64 11-74 3-77 (296)
248 PF05918 API5: Apoptosis inhib 95.8 0.52 1.1E-05 45.0 15.2 133 104-254 23-159 (556)
249 KOG1785 Tyrosine kinase negati 95.7 0.0044 9.5E-08 54.5 1.2 45 13-57 371-416 (563)
250 COG5113 UFD2 Ubiquitin fusion 95.7 0.023 5.1E-07 53.3 5.8 74 6-80 849-923 (929)
251 COG5175 MOT2 Transcriptional r 95.7 0.0078 1.7E-07 51.8 2.5 51 9-60 13-67 (480)
252 KOG4535 HEAT and armadillo rep 95.6 0.091 2E-06 48.1 9.2 177 203-379 407-601 (728)
253 PF05290 Baculo_IE-1: Baculovi 95.5 0.017 3.6E-07 42.8 3.3 50 10-59 79-134 (140)
254 COG5209 RCD1 Uncharacterized p 95.5 1.2 2.7E-05 36.8 14.6 144 164-307 118-277 (315)
255 KOG1967 DNA repair/transcripti 95.4 0.14 3E-06 50.7 10.2 146 228-375 867-1018(1030)
256 KOG2999 Regulator of Rac1, req 95.4 0.49 1.1E-05 44.3 13.1 152 229-380 84-241 (713)
257 PF06371 Drf_GBD: Diaphanous G 95.4 0.12 2.5E-06 42.4 8.6 77 262-338 100-186 (187)
258 KOG0414 Chromosome condensatio 95.4 0.5 1.1E-05 48.3 14.0 142 105-259 920-1066(1251)
259 PF02985 HEAT: HEAT repeat; I 95.4 0.05 1.1E-06 29.6 4.3 29 105-133 1-29 (31)
260 PF02891 zf-MIZ: MIZ/SP-RING z 95.3 0.0097 2.1E-07 36.7 1.4 44 11-55 2-50 (50)
261 KOG2025 Chromosome condensatio 95.2 2.3 5E-05 41.4 17.2 115 145-266 84-199 (892)
262 PF11701 UNC45-central: Myosin 95.2 0.096 2.1E-06 41.5 7.1 144 106-254 5-156 (157)
263 KOG4692 Predicted E3 ubiquitin 95.2 0.014 3.1E-07 50.5 2.5 47 9-56 420-466 (489)
264 KOG0827 Predicted E3 ubiquitin 95.2 0.016 3.5E-07 51.0 2.8 49 9-57 2-56 (465)
265 KOG1941 Acetylcholine receptor 95.2 0.0076 1.6E-07 52.9 0.8 43 11-53 365-412 (518)
266 KOG1991 Nuclear transport rece 95.1 4.2 9.2E-05 41.1 21.2 235 104-342 410-674 (1010)
267 PF12530 DUF3730: Protein of u 95.1 1.1 2.4E-05 38.2 13.9 200 149-366 3-217 (234)
268 KOG2979 Protein involved in DN 95.1 0.025 5.4E-07 47.2 3.6 62 12-73 177-244 (262)
269 KOG1967 DNA repair/transcripti 95.0 0.094 2E-06 51.8 7.7 147 146-293 867-1019(1030)
270 PF08045 CDC14: Cell division 95.0 0.26 5.6E-06 42.1 9.5 95 120-214 107-205 (257)
271 KOG1566 Conserved protein Mo25 94.9 2.3 5E-05 37.1 15.4 200 101-301 76-289 (342)
272 KOG2956 CLIP-associating prote 94.9 1.9 4E-05 39.8 15.1 145 228-380 329-476 (516)
273 KOG2062 26S proteasome regulat 94.9 0.5 1.1E-05 45.9 11.8 97 146-256 554-652 (929)
274 KOG3665 ZYG-1-like serine/thre 94.9 2 4.2E-05 43.0 16.6 169 210-378 494-694 (699)
275 KOG1078 Vesicle coat complex C 94.9 2.2 4.7E-05 41.9 16.1 62 153-218 252-313 (865)
276 PF08324 PUL: PUL domain; Int 94.8 0.66 1.4E-05 40.5 12.2 186 190-375 66-268 (268)
277 KOG1991 Nuclear transport rece 94.8 1.9 4.2E-05 43.4 16.0 135 146-283 410-561 (1010)
278 KOG1820 Microtubule-associated 94.7 0.39 8.4E-06 48.2 11.4 184 107-297 256-442 (815)
279 KOG1820 Microtubule-associated 94.7 0.59 1.3E-05 46.9 12.6 186 190-381 256-443 (815)
280 KOG1001 Helicase-like transcri 94.7 0.015 3.3E-07 56.8 1.7 45 12-57 455-500 (674)
281 KOG2025 Chromosome condensatio 94.7 0.74 1.6E-05 44.5 12.3 126 203-334 62-188 (892)
282 PF14668 RICTOR_V: Rapamycin-i 94.7 0.18 4E-06 33.8 6.2 67 204-270 4-71 (73)
283 KOG2930 SCF ubiquitin ligase, 94.5 0.025 5.4E-07 39.6 1.8 27 28-55 80-106 (114)
284 COG5209 RCD1 Uncharacterized p 94.5 0.49 1.1E-05 39.0 9.3 145 121-266 117-277 (315)
285 COG5098 Chromosome condensatio 94.5 1.8 3.9E-05 42.0 14.3 203 116-339 908-1113(1128)
286 KOG2062 26S proteasome regulat 94.4 2.4 5.2E-05 41.4 15.1 157 147-325 520-680 (929)
287 KOG4535 HEAT and armadillo rep 94.4 0.56 1.2E-05 43.2 10.5 257 118-385 269-563 (728)
288 PF11865 DUF3385: Domain of un 94.4 0.36 7.8E-06 38.4 8.5 144 147-297 11-156 (160)
289 PF06371 Drf_GBD: Diaphanous G 94.3 0.26 5.6E-06 40.3 8.0 111 103-215 65-186 (187)
290 KOG1243 Protein kinase [Genera 94.3 0.88 1.9E-05 44.0 12.2 226 139-379 286-513 (690)
291 KOG0915 Uncharacterized conser 94.3 3.5 7.5E-05 43.8 16.9 276 101-380 953-1264(1702)
292 KOG1943 Beta-tubulin folding c 94.1 1.3 2.8E-05 45.1 13.2 221 146-384 341-576 (1133)
293 KOG4275 Predicted E3 ubiquitin 94.1 0.0062 1.3E-07 51.3 -2.0 41 11-56 300-341 (350)
294 KOG2032 Uncharacterized conser 94.1 0.55 1.2E-05 43.4 9.8 153 186-339 253-415 (533)
295 COG5109 Uncharacterized conser 94.0 0.046 1E-06 46.7 2.9 48 7-54 332-384 (396)
296 PF11707 Npa1: Ribosome 60S bi 94.0 3.5 7.5E-05 37.3 15.1 156 106-261 58-241 (330)
297 KOG1566 Conserved protein Mo25 93.9 4.1 8.9E-05 35.7 18.4 219 141-362 74-310 (342)
298 KOG3002 Zn finger protein [Gen 93.7 0.079 1.7E-06 46.4 3.9 60 8-74 45-105 (299)
299 COG5220 TFB3 Cdk activating ki 93.7 0.019 4E-07 47.0 -0.0 47 11-57 10-64 (314)
300 PRK14707 hypothetical protein; 93.5 9.4 0.0002 42.3 18.6 268 106-377 165-441 (2710)
301 PF14500 MMS19_N: Dos2-interac 93.5 4.6 0.0001 35.0 17.3 213 108-339 3-237 (262)
302 KOG3970 Predicted E3 ubiquitin 93.5 0.16 3.6E-06 41.2 4.9 49 11-59 50-107 (299)
303 KOG0414 Chromosome condensatio 93.4 0.92 2E-05 46.5 10.9 139 229-380 920-1063(1251)
304 KOG4362 Transcriptional regula 93.4 0.032 6.8E-07 53.6 0.9 66 8-73 18-85 (684)
305 PF12530 DUF3730: Protein of u 93.2 3 6.6E-05 35.5 12.7 130 113-256 10-150 (234)
306 PF05918 API5: Apoptosis inhib 93.1 0.6 1.3E-05 44.6 8.9 99 102-212 57-158 (556)
307 PRK14707 hypothetical protein; 93.1 14 0.0003 41.2 18.9 264 104-370 205-476 (2710)
308 PF10363 DUF2435: Protein of u 93.0 0.34 7.5E-06 34.3 5.5 70 104-175 3-72 (92)
309 KOG3113 Uncharacterized conser 93.0 0.076 1.7E-06 44.0 2.4 50 9-61 109-162 (293)
310 KOG2114 Vacuolar assembly/sort 93.0 0.052 1.1E-06 52.9 1.7 40 11-54 840-880 (933)
311 KOG4464 Signaling protein RIC- 92.9 4.4 9.6E-05 36.8 13.2 102 117-218 110-233 (532)
312 KOG1814 Predicted E3 ubiquitin 92.9 0.17 3.6E-06 45.3 4.5 45 10-54 183-237 (445)
313 PF12231 Rif1_N: Rap1-interact 92.8 7.7 0.00017 35.7 16.4 133 159-297 59-203 (372)
314 COG5116 RPN2 26S proteasome re 92.7 2.1 4.5E-05 40.6 11.3 99 145-257 550-650 (926)
315 COG5116 RPN2 26S proteasome re 92.6 3.4 7.3E-05 39.3 12.6 129 191-339 520-650 (926)
316 PF08167 RIX1: rRNA processing 92.4 1.6 3.4E-05 35.0 9.3 109 103-215 24-142 (165)
317 PF01347 Vitellogenin_N: Lipop 92.4 3.7 8.1E-05 40.7 13.9 157 147-329 432-612 (618)
318 PF01347 Vitellogenin_N: Lipop 92.1 1.7 3.8E-05 43.0 11.3 165 187-376 395-584 (618)
319 PF08324 PUL: PUL domain; Int 92.1 2.8 6E-05 36.6 11.4 183 148-330 65-265 (268)
320 cd03568 VHS_STAM VHS domain fa 92.1 1.1 2.4E-05 34.8 7.8 73 310-382 37-111 (144)
321 smart00638 LPD_N Lipoprotein N 92.1 9.2 0.0002 37.6 16.2 204 147-377 312-541 (574)
322 PHA02825 LAP/PHD finger-like p 92.0 0.24 5.3E-06 38.2 3.9 49 8-57 5-59 (162)
323 COG5656 SXM1 Importin, protein 91.9 14 0.0003 36.5 17.4 274 104-381 408-711 (970)
324 KOG1832 HIV-1 Vpr-binding prot 91.6 1.5 3.3E-05 43.7 9.6 123 263-385 595-777 (1516)
325 KOG0301 Phospholipase A2-activ 91.6 6.3 0.00014 38.2 13.3 159 117-280 557-727 (745)
326 PF10367 Vps39_2: Vacuolar sor 91.6 0.059 1.3E-06 39.7 0.2 34 6-39 73-108 (109)
327 COG5627 MMS21 DNA repair prote 91.6 0.14 3.1E-06 41.9 2.4 57 12-68 190-250 (275)
328 cd03569 VHS_Hrs_Vps27p VHS dom 91.4 1.8 3.9E-05 33.6 8.3 74 102-175 39-114 (142)
329 PF14225 MOR2-PAG1_C: Cell mor 91.4 8.9 0.00019 33.3 15.1 175 187-380 64-253 (262)
330 PF11865 DUF3385: Domain of un 91.3 2.6 5.6E-05 33.5 9.3 145 187-338 10-156 (160)
331 cd03569 VHS_Hrs_Vps27p VHS dom 91.2 1.7 3.6E-05 33.8 8.0 73 310-382 41-115 (142)
332 KOG3665 ZYG-1-like serine/thre 91.0 7.4 0.00016 39.0 14.1 190 127-334 494-692 (699)
333 COG5218 YCG1 Chromosome conden 91.0 2.4 5.2E-05 40.3 9.9 101 227-331 90-191 (885)
334 PF07814 WAPL: Wings apart-lik 91.0 6.5 0.00014 36.0 12.8 92 147-238 22-116 (361)
335 cd03561 VHS VHS domain family; 90.9 1.7 3.6E-05 33.3 7.7 73 311-383 38-114 (133)
336 cd03561 VHS VHS domain family; 90.6 2.5 5.4E-05 32.4 8.5 74 102-175 35-112 (133)
337 PF10363 DUF2435: Protein of u 90.6 1.5 3.3E-05 31.0 6.6 83 272-363 6-88 (92)
338 PF11707 Npa1: Ribosome 60S bi 90.4 13 0.00029 33.5 18.6 155 148-302 58-241 (330)
339 KOG1020 Sister chromatid cohes 90.3 4.8 0.00011 42.8 12.2 110 228-344 816-926 (1692)
340 PF12031 DUF3518: Domain of un 90.3 1 2.2E-05 37.8 6.2 82 242-323 138-229 (257)
341 cd03567 VHS_GGA VHS domain fam 90.3 2.4 5.2E-05 32.7 8.0 72 310-381 38-116 (139)
342 PF14225 MOR2-PAG1_C: Cell mor 90.2 12 0.00025 32.6 16.0 214 109-339 12-254 (262)
343 PHA03096 p28-like protein; Pro 90.2 0.18 3.8E-06 43.9 1.9 43 12-54 179-231 (284)
344 cd03568 VHS_STAM VHS domain fa 90.0 2.9 6.3E-05 32.5 8.3 74 102-175 35-110 (144)
345 KOG4739 Uncharacterized protei 89.8 0.11 2.5E-06 43.1 0.4 49 12-63 4-54 (233)
346 PF14726 RTTN_N: Rotatin, an a 89.4 4.6 9.9E-05 29.0 8.2 72 263-334 23-95 (98)
347 COG5218 YCG1 Chromosome conden 89.4 17 0.00036 35.0 13.8 101 186-290 90-191 (885)
348 KOG2933 Uncharacterized conser 89.3 2.7 5.9E-05 36.7 8.2 142 103-255 87-232 (334)
349 smart00288 VHS Domain present 89.3 3.8 8.2E-05 31.4 8.4 73 102-174 35-110 (133)
350 PF13251 DUF4042: Domain of un 89.2 6.1 0.00013 32.1 9.8 139 162-300 2-176 (182)
351 PF08746 zf-RING-like: RING-li 89.2 0.52 1.1E-05 27.9 2.8 39 14-52 1-43 (43)
352 KOG1243 Protein kinase [Genera 89.1 5 0.00011 39.1 10.6 186 144-338 328-514 (690)
353 PF14726 RTTN_N: Rotatin, an a 89.1 5.1 0.00011 28.7 8.3 69 309-378 29-97 (98)
354 KOG2933 Uncharacterized conser 89.0 2 4.3E-05 37.5 7.2 140 189-338 90-233 (334)
355 smart00638 LPD_N Lipoprotein N 88.9 18 0.00039 35.6 15.0 132 187-336 393-542 (574)
356 PF14569 zf-UDP: Zinc-binding 88.6 0.6 1.3E-05 31.1 3.0 46 11-56 9-61 (80)
357 smart00288 VHS Domain present 88.6 3.6 7.8E-05 31.5 7.9 71 311-381 38-111 (133)
358 KOG1940 Zn-finger protein [Gen 88.6 0.35 7.6E-06 41.6 2.5 43 11-54 158-204 (276)
359 cd03567 VHS_GGA VHS domain fam 88.5 4.4 9.5E-05 31.3 8.3 72 103-174 37-115 (139)
360 PF08506 Cse1: Cse1; InterPro 88.5 18 0.00039 33.3 13.5 155 213-376 196-370 (370)
361 KOG2137 Protein kinase [Signal 88.4 6 0.00013 38.7 10.7 141 143-288 386-527 (700)
362 COG5656 SXM1 Importin, protein 88.3 29 0.00062 34.5 15.0 132 145-278 407-551 (970)
363 KOG1020 Sister chromatid cohes 88.3 6.4 0.00014 41.9 11.3 143 104-256 816-959 (1692)
364 KOG0301 Phospholipase A2-activ 87.7 16 0.00035 35.5 12.8 166 152-322 550-728 (745)
365 PF00790 VHS: VHS domain; Int 87.5 3.9 8.5E-05 31.6 7.6 72 311-382 43-119 (140)
366 PF05605 zf-Di19: Drought indu 87.2 0.33 7.1E-06 30.5 1.2 38 10-54 1-39 (54)
367 KOG2137 Protein kinase [Signal 87.0 4.2 9.2E-05 39.7 8.8 130 186-323 388-521 (700)
368 KOG1949 Uncharacterized conser 87.0 22 0.00047 35.1 13.2 144 190-339 177-331 (1005)
369 KOG0298 DEAD box-containing he 86.3 0.19 4.2E-06 51.6 -0.4 45 8-53 1150-1195(1394)
370 PHA02862 5L protein; Provision 85.5 0.84 1.8E-05 34.6 2.7 46 12-58 3-54 (156)
371 PF12906 RINGv: RING-variant d 85.3 0.59 1.3E-05 28.3 1.6 39 14-52 1-47 (47)
372 PF07191 zinc-ribbons_6: zinc- 84.7 0.05 1.1E-06 35.7 -3.5 41 11-57 1-41 (70)
373 PF00790 VHS: VHS domain; Int 84.5 5.1 0.00011 31.0 6.9 73 102-174 40-117 (140)
374 PLN03076 ARF guanine nucleotid 84.4 51 0.0011 37.0 16.2 232 103-341 1181-1491(1780)
375 cd03572 ENTH_epsin_related ENT 84.1 12 0.00026 28.1 8.3 72 311-382 39-120 (122)
376 PF14353 CpXC: CpXC protein 83.9 0.72 1.6E-05 35.1 1.9 47 11-57 1-49 (128)
377 COG5098 Chromosome condensatio 83.8 5.7 0.00012 38.8 7.9 108 271-380 301-414 (1128)
378 PF08167 RIX1: rRNA processing 83.7 9.7 0.00021 30.4 8.4 108 188-298 26-143 (165)
379 PF14666 RICTOR_M: Rapamycin-i 83.3 27 0.00058 29.5 12.5 129 242-381 78-225 (226)
380 PF10272 Tmpp129: Putative tra 83.0 0.89 1.9E-05 40.9 2.3 28 32-59 314-353 (358)
381 KOG3899 Uncharacterized conser 82.6 0.77 1.7E-05 39.1 1.7 29 29-57 325-365 (381)
382 PF14500 MMS19_N: Dos2-interac 81.6 35 0.00075 29.7 14.4 219 150-382 3-238 (262)
383 PF14446 Prok-RING_1: Prokaryo 81.5 1.5 3.2E-05 27.3 2.2 30 11-40 5-38 (54)
384 PF10521 DUF2454: Protein of u 81.4 11 0.00024 33.2 8.6 69 147-215 120-202 (282)
385 KOG1812 Predicted E3 ubiquitin 81.2 1.1 2.5E-05 41.1 2.4 47 11-57 146-203 (384)
386 PF13251 DUF4042: Domain of un 81.1 26 0.00057 28.5 9.9 138 244-384 2-177 (182)
387 COG3813 Uncharacterized protei 81.0 1.8 3.9E-05 28.2 2.5 32 29-63 27-58 (84)
388 PF06844 DUF1244: Protein of u 80.6 1.1 2.3E-05 28.9 1.4 13 32-44 11-23 (68)
389 cd08050 TAF6 TATA Binding Prot 79.7 22 0.00047 32.3 10.1 138 150-296 182-338 (343)
390 PF07800 DUF1644: Protein of u 79.7 0.71 1.5E-05 35.7 0.5 21 10-30 1-21 (162)
391 cd00197 VHS_ENTH_ANTH VHS, ENT 78.2 17 0.00037 26.8 7.6 70 311-380 38-114 (115)
392 PF11791 Aconitase_B_N: Aconit 78.1 2.4 5.2E-05 32.8 2.9 26 312-337 96-121 (154)
393 PRK06266 transcription initiat 78.0 3.5 7.6E-05 33.4 4.0 55 9-79 115-170 (178)
394 KOG0392 SNF2 family DNA-depend 77.5 63 0.0014 34.4 13.1 234 103-340 76-326 (1549)
395 PF10521 DUF2454: Protein of u 77.4 19 0.0004 31.7 8.8 72 104-175 119-203 (282)
396 PLN02189 cellulose synthase 77.2 1.7 3.6E-05 44.5 2.3 45 13-57 36-87 (1040)
397 PF10274 ParcG: Parkin co-regu 77.0 34 0.00074 27.7 9.2 73 228-300 38-111 (183)
398 KOG0309 Conserved WD40 repeat- 76.7 1.7 3.7E-05 42.3 2.1 45 10-55 1027-1074(1081)
399 KOG2199 Signal transducing ada 76.1 16 0.00035 33.1 7.7 72 310-381 45-118 (462)
400 PF12830 Nipped-B_C: Sister ch 75.9 21 0.00044 29.2 8.1 64 311-382 9-75 (187)
401 PF03854 zf-P11: P-11 zinc fin 75.9 1.1 2.3E-05 26.8 0.4 44 12-58 3-47 (50)
402 PLN03076 ARF guanine nucleotid 75.9 1.3E+02 0.0028 34.1 15.8 135 157-297 1148-1298(1780)
403 cd03565 VHS_Tom1 VHS domain fa 75.6 27 0.0006 27.0 8.2 72 311-382 39-116 (141)
404 KOG1815 Predicted E3 ubiquitin 75.5 2.9 6.2E-05 39.5 3.3 36 9-44 68-104 (444)
405 PF06906 DUF1272: Protein of u 75.5 3.5 7.7E-05 25.6 2.5 43 13-58 7-53 (57)
406 KOG4718 Non-SMC (structural ma 74.8 1.6 3.4E-05 35.5 1.2 44 12-56 182-226 (235)
407 KOG0825 PHD Zn-finger protein 74.7 2.7 5.8E-05 41.3 2.8 39 6-44 91-136 (1134)
408 KOG1791 Uncharacterized conser 74.6 1.4E+02 0.003 32.8 14.8 202 178-379 1430-1658(1758)
409 PF08216 CTNNBL: Catenin-beta- 74.4 5.1 0.00011 29.1 3.6 43 121-164 63-105 (108)
410 KOG0891 DNA-dependent protein 74.2 93 0.002 36.1 14.4 196 183-379 561-761 (2341)
411 KOG1949 Uncharacterized conser 74.1 47 0.001 32.9 10.7 147 149-298 177-331 (1005)
412 PF11791 Aconitase_B_N: Aconit 73.9 9.4 0.0002 29.6 5.1 81 232-321 41-137 (154)
413 PF04821 TIMELESS: Timeless pr 73.4 40 0.00086 29.4 9.6 15 285-299 136-150 (266)
414 PF10274 ParcG: Parkin co-regu 73.4 48 0.001 26.9 11.0 113 268-382 37-165 (183)
415 PLN02436 cellulose synthase A 73.3 2.4 5.2E-05 43.5 2.3 45 13-57 38-89 (1094)
416 PLN03205 ATR interacting prote 73.2 67 0.0014 29.5 10.8 199 189-387 325-587 (652)
417 PF10497 zf-4CXXC_R1: Zinc-fin 73.2 3.7 8.1E-05 29.9 2.7 45 11-55 7-70 (105)
418 KOG2932 E3 ubiquitin ligase in 72.9 1.5 3.2E-05 37.9 0.6 43 12-57 91-134 (389)
419 PF06685 DUF1186: Protein of u 72.4 62 0.0014 27.8 10.9 80 226-318 71-161 (249)
420 PLN02638 cellulose synthase A 72.2 2.6 5.7E-05 43.3 2.3 44 13-56 19-69 (1079)
421 PF12726 SEN1_N: SEN1 N termin 72.0 62 0.0014 33.0 12.0 151 230-381 443-608 (727)
422 KOG1788 Uncharacterized conser 71.9 1.4E+02 0.003 31.6 15.1 197 102-298 718-982 (2799)
423 PLN02195 cellulose synthase A 71.8 2.9 6.2E-05 42.6 2.4 46 12-57 7-59 (977)
424 KOG4464 Signaling protein RIC- 71.7 85 0.0018 29.0 12.0 151 231-381 48-228 (532)
425 PF10571 UPF0547: Uncharacteri 71.3 2.5 5.5E-05 21.9 1.1 9 13-21 2-10 (26)
426 COG5183 SSM4 Protein involved 70.7 5 0.00011 39.6 3.6 55 3-57 3-66 (1175)
427 cd00350 rubredoxin_like Rubred 70.1 3.6 7.8E-05 22.7 1.6 11 45-55 16-26 (33)
428 PF08216 CTNNBL: Catenin-beta- 69.9 9.3 0.0002 27.8 4.1 43 204-246 63-105 (108)
429 cd00730 rubredoxin Rubredoxin; 69.8 2.3 4.9E-05 26.1 0.8 13 7-19 30-42 (50)
430 COG5236 Uncharacterized conser 69.2 4.7 0.0001 35.4 2.9 48 9-56 59-107 (493)
431 PF08389 Xpo1: Exportin 1-like 69.1 36 0.00078 26.1 7.9 61 189-252 84-148 (148)
432 cd08050 TAF6 TATA Binding Prot 68.9 35 0.00076 31.0 8.6 141 188-337 179-338 (343)
433 PF08506 Cse1: Cse1; InterPro 68.5 54 0.0012 30.2 9.7 125 120-252 227-370 (370)
434 KOG3268 Predicted E3 ubiquitin 67.6 4.5 9.7E-05 31.9 2.2 31 27-57 188-228 (234)
435 TIGR00373 conserved hypothetic 67.6 4 8.7E-05 32.3 2.0 15 45-59 127-141 (158)
436 KOG2549 Transcription initiati 67.5 1E+02 0.0022 29.6 11.2 141 149-298 210-370 (576)
437 PF08389 Xpo1: Exportin 1-like 67.1 55 0.0012 25.0 9.5 125 162-293 4-148 (148)
438 KOG0891 DNA-dependent protein 67.0 2.6E+02 0.0056 32.8 16.6 250 121-383 461-721 (2341)
439 PF00301 Rubredoxin: Rubredoxi 66.4 2.4 5.2E-05 25.6 0.4 14 6-19 29-42 (47)
440 COG3492 Uncharacterized protei 65.2 3.4 7.4E-05 28.4 1.0 13 32-44 42-54 (104)
441 PF05883 Baculo_RING: Baculovi 65.1 3.6 7.9E-05 31.1 1.3 44 11-55 26-78 (134)
442 KOG2549 Transcription initiati 65.1 96 0.0021 29.8 10.5 141 105-255 208-368 (576)
443 PLN02400 cellulose synthase 63.5 3.4 7.3E-05 42.6 1.1 45 13-57 38-89 (1085)
444 PLN02915 cellulose synthase A 62.9 5.2 0.00011 41.2 2.2 47 11-57 15-68 (1044)
445 PF06012 DUF908: Domain of Unk 62.9 47 0.001 30.0 8.2 74 203-276 238-323 (329)
446 KOG1791 Uncharacterized conser 62.7 2E+02 0.0043 31.7 13.1 198 100-322 1435-1640(1758)
447 PF12726 SEN1_N: SEN1 N termin 62.7 99 0.0021 31.6 11.3 112 190-303 444-557 (727)
448 PF07923 N1221: N1221-like pro 62.6 21 0.00045 31.7 5.8 57 101-157 57-127 (293)
449 PF06676 DUF1178: Protein of u 61.8 3.4 7.5E-05 32.0 0.6 23 28-55 9-41 (148)
450 KOG1992 Nuclear export recepto 61.6 91 0.002 31.6 10.0 171 147-321 499-706 (960)
451 KOG4445 Uncharacterized conser 61.5 2.8 6E-05 36.1 0.1 48 10-57 114-186 (368)
452 KOG1087 Cytosolic sorting prot 60.9 90 0.002 29.7 9.7 69 104-172 38-109 (470)
453 KOG3579 Predicted E3 ubiquitin 60.7 4.9 0.00011 34.3 1.4 43 9-51 266-316 (352)
454 KOG1832 HIV-1 Vpr-binding prot 59.2 97 0.0021 31.8 9.8 151 205-362 327-490 (1516)
455 PF14666 RICTOR_M: Rapamycin-i 58.9 1.1E+02 0.0024 25.9 12.8 128 201-338 78-224 (226)
456 COG3809 Uncharacterized protei 58.8 1.7 3.8E-05 28.9 -1.2 12 12-23 2-13 (88)
457 COG5537 IRR1 Cohesin [Cell div 58.7 84 0.0018 30.6 9.0 134 240-381 287-422 (740)
458 KOG0314 Predicted E3 ubiquitin 58.4 6.5 0.00014 36.5 1.9 68 7-76 215-286 (448)
459 cd03565 VHS_Tom1 VHS domain fa 58.3 85 0.0018 24.3 9.0 73 103-175 37-115 (141)
460 PF11864 DUF3384: Domain of un 58.0 1.8E+02 0.0038 27.8 19.9 103 272-380 216-329 (464)
461 PF01603 B56: Protein phosphat 57.9 1.7E+02 0.0036 27.5 11.3 79 180-258 126-205 (409)
462 PF11229 DUF3028: Protein of u 57.7 1.8E+02 0.0039 27.9 11.4 232 147-383 98-355 (589)
463 PF12397 U3snoRNP10: U3 small 57.7 77 0.0017 23.6 8.2 67 270-341 7-76 (121)
464 KOG1087 Cytosolic sorting prot 56.8 35 0.00075 32.3 6.3 70 310-379 38-110 (470)
465 PF12773 DZR: Double zinc ribb 56.8 10 0.00022 23.1 2.0 38 14-57 1-40 (50)
466 PF12463 DUF3689: Protein of u 56.8 1.4E+02 0.0031 26.5 15.0 127 222-348 3-182 (303)
467 KOG2034 Vacuolar sorting prote 56.6 5.1 0.00011 40.1 1.0 37 7-43 813-851 (911)
468 PF04216 FdhE: Protein involve 56.5 2.1 4.5E-05 37.9 -1.5 45 10-55 171-220 (290)
469 KOG1992 Nuclear export recepto 56.1 2.4E+02 0.0052 28.8 15.8 30 104-133 498-527 (960)
470 KOG4231 Intracellular membrane 55.0 5.6 0.00012 37.2 0.9 67 315-381 333-399 (763)
471 KOG0392 SNF2 family DNA-depend 55.0 1.1E+02 0.0023 32.8 9.7 176 202-383 144-327 (1549)
472 KOG4231 Intracellular membrane 54.6 45 0.00097 31.6 6.5 67 150-216 332-399 (763)
473 PF04388 Hamartin: Hamartin pr 54.4 1.8E+02 0.0038 29.4 11.1 57 323-379 81-138 (668)
474 cd03572 ENTH_epsin_related ENT 53.9 80 0.0017 23.7 6.7 70 104-173 38-117 (122)
475 TIGR01562 FdhE formate dehydro 53.5 3.4 7.3E-05 36.5 -0.7 45 10-55 183-233 (305)
476 PF14663 RasGEF_N_2: Rapamycin 53.3 47 0.001 24.6 5.5 53 188-240 9-70 (115)
477 PF09538 FYDLN_acid: Protein o 52.8 13 0.00028 27.2 2.3 13 47-59 27-39 (108)
478 PF04821 TIMELESS: Timeless pr 52.7 97 0.0021 27.0 8.2 35 306-340 174-209 (266)
479 PF10235 Cript: Microtubule-as 51.9 11 0.00024 26.4 1.7 38 11-58 44-81 (90)
480 KOG0883 Cyclophilin type, U bo 51.8 12 0.00025 33.8 2.3 34 11-44 40-73 (518)
481 KOG2005 26S proteasome regulat 51.3 2.1E+02 0.0046 28.5 10.4 251 104-379 415-702 (878)
482 PF13001 Ecm29: Proteasome sta 50.8 1.1E+02 0.0024 29.6 8.9 171 200-384 250-446 (501)
483 PF00096 zf-C2H2: Zinc finger, 50.7 3.8 8.3E-05 20.0 -0.5 13 12-24 1-13 (23)
484 PF03130 HEAT_PBS: PBS lyase H 50.1 10 0.00022 19.7 1.1 26 244-279 1-26 (27)
485 PF06685 DUF1186: Protein of u 49.9 1.7E+02 0.0037 25.2 14.8 74 265-349 69-152 (249)
486 PF06012 DUF908: Domain of Unk 49.9 63 0.0014 29.2 6.8 75 285-359 238-323 (329)
487 PF12074 DUF3554: Domain of un 49.9 2E+02 0.0043 26.0 15.0 209 163-381 4-235 (339)
488 PRK11088 rrmA 23S rRNA methylt 49.6 9.7 0.00021 33.3 1.5 25 11-35 2-29 (272)
489 PF01365 RYDR_ITPR: RIH domain 49.6 56 0.0012 27.1 6.0 96 265-363 39-153 (207)
490 PF12660 zf-TFIIIC: Putative z 49.4 0.99 2.1E-05 32.5 -3.9 45 12-57 15-66 (99)
491 PF07975 C1_4: TFIIH C1-like d 48.4 18 0.0004 22.3 2.1 25 28-53 26-50 (51)
492 KOG0413 Uncharacterized conser 48.1 81 0.0018 32.7 7.5 125 118-256 945-1072(1529)
493 PRK00420 hypothetical protein; 48.0 6.4 0.00014 28.9 0.2 14 44-57 38-51 (112)
494 KOG2199 Signal transducing ada 47.8 96 0.0021 28.4 7.2 74 102-175 43-118 (462)
495 KOG1525 Sister chromatid cohes 47.7 66 0.0014 34.7 7.2 145 104-255 259-403 (1266)
496 KOG1848 Uncharacterized conser 47.6 1.3E+02 0.0028 32.6 9.1 112 186-301 839-961 (1610)
497 PF13001 Ecm29: Proteasome sta 47.6 2.7E+02 0.0059 26.9 11.1 172 156-340 247-444 (501)
498 PF08767 CRM1_C: CRM1 C termin 47.6 1.8E+02 0.0038 26.2 9.2 138 243-382 42-195 (319)
499 KOG1952 Transcription factor N 47.5 12 0.00027 37.4 1.9 45 10-54 190-244 (950)
500 PF13811 DUF4186: Domain of un 47.4 11 0.00023 27.4 1.2 10 32-41 75-84 (111)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-33 Score=248.73 Aligned_cols=282 Identities=22% Similarity=0.283 Sum_probs=252.6
Q ss_pred cchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-c
Q 016465 101 CDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-S 178 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~ 178 (389)
...|.++.++++|... ++..+.+|+|+|.+++.++.+....+++.|++|.|+.++.+++..+++.|+|+|+|++.+. .
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 4459999999999754 5899999999999999999999999999999999999999999999999999999999977 6
Q ss_pred ccchhcccCChHHHHHHHccCCH-HHHHHHHHHHHHhcCCchhhHH-HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 179 NKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVA-IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
.|+.+.+.|++++|+.++...+. .....++|+|.||+........ -.-..+++.|..++.+.|+++...|+|+|.+|+
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 67788899999999999988765 6778999999999987533222 233588999999999999999999999999999
Q ss_pred cCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh-HHHhhccCChHHHHHHHhc-CChHHHHHHHHH
Q 016465 257 IYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVIRT-GSPRNRENAAAV 333 (389)
Q Consensus 257 ~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~ 333 (389)
..+... ..+++.|+++.|+++|.+.+..++..|+.+++|++...+. .+.+++.|+++.|..++.. ....++.+|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 766655 6677899999999999999999999999999999866555 5667889999999999985 456689999999
Q ss_pred HHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 334 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 334 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
|+|++.++++..+.+.+.|+++.|+.++++++.++|+.|+|++.++...
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999998654
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.6e-31 Score=222.09 Aligned_cols=281 Identities=21% Similarity=0.243 Sum_probs=249.1
Q ss_pred ccchhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-
Q 016465 100 DCDRAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND- 177 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~- 177 (389)
+.+.|.+|.+++++. ++..-.+.+|+|+|.+++.+.......+++.|++|.++++|.+.+.++++.++|+|+|++.+.
T Consensus 110 VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~ 189 (526)
T COG5064 110 VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE 189 (526)
T ss_pred HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch
Confidence 467899999999994 555567899999999999988888888999999999999999999999999999999999987
Q ss_pred cccchhcccCChHHHHHHHccCCH--HHHHHHHHHHHHhcCCch--hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH
Q 016465 178 SNKGTIVNAGAIPDIVDVLKNGSM--EARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 253 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~~--~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 253 (389)
..|+.+...|++++++.+|.+... .+...+.|.|.||+.... ....- -..+++.|.+++.+.|+++...|+|++.
T Consensus 190 ~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~-isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 190 GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN-ISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 457777799999999999987644 778899999999996532 22221 2467899999999999999999999999
Q ss_pred HhccCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhH-HHhhccCChHHHHHHHhcCChHHHHHHH
Q 016465 254 NLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK-TAIGQAEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 254 ~L~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
.|+..+..+ ..+++.|+.+.|+++|.+++..++..|+..++|+....+.+ +.+++.|+++.+..+|.+....+|.+|+
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999877655 55778999999999999999999999999999999766554 5668899999999999998889999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 332 AVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 332 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
|++.|++.++.+..+.+.+.++++.|+.++...+..+++.|.|++.+...
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999998754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-30 Score=228.95 Aligned_cols=288 Identities=23% Similarity=0.238 Sum_probs=255.6
Q ss_pred CCccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCCh-HHHHHHHHHHHhcccc
Q 016465 98 VSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP-RTQEHAVTALLNLSIN 176 (389)
Q Consensus 98 ~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~-~~~~~a~~~L~~l~~~ 176 (389)
..+.+.|++|.++.++.+++.+++++|+|+|++++.+++..|+.+++.|+++.|+.++...+. .+.+.+.|+|.||+..
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 345788999999999999999999999999999999999999999999999999999988765 6788999999999986
Q ss_pred ccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016465 177 DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 177 ~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
......+. -..++|.|..++.+.|+++...|+|+|.+|+... +....+.+.|+++.|+++|.+.+..++..|+++++|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 63332222 2568999999999999999999999999999665 455556778999999999999999999999999999
Q ss_pred hccCCCch-HHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHHH
Q 016465 255 LSIYQGNK-ARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 255 L~~~~~~~-~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
++..++.+ ..+++.|+++.|..++.. ....++..|+++|.|++ ++.+..+.+++.|.++.|+.+|++++.++|.+|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 99888877 446789999999999995 55669999999999998 5566788899999999999999999999999999
Q ss_pred HHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 332 AVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 332 ~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
|++.|++.+ +++....+++.|+++.++.++.-.|.++...+..+|++|-+..+.
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999875 588999999999999999999778999999999999999776654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-30 Score=215.97 Aligned_cols=285 Identities=26% Similarity=0.348 Sum_probs=265.4
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
++.-+++..|+..+..+.-++|..++.+|.+++.- ++++..+...|++..+.++-++.+..++..+..+|.++....++
T Consensus 122 iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 122 IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh
Confidence 45556778888888888889999999999999984 78999999999999999988888999999999999999999999
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhC--cHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
|+.++..|++|.|+.++++++.++++++..++.+++.+...+..+.+.+ .++.|++++.+++++++-.|..+|.||+.
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999887 99999999999999999999999999999
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC-hHHHHHHHHHHHH
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWA 336 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~-~~~~~~a~~~L~~ 336 (389)
+.+.+..+++.|.+|.++++|+++.-......+.++.|++.++-+...|++.|++.+|+++|+.++ ++++-.|+.+|+|
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 999999999999999999999998888888999999999999999999999999999999999875 6699999999999
Q ss_pred HhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 337 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
|+......+..+.+.|.+++|.+++.++...+|.....++..|+-.+++
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 9998888999999999999999999999999999998888888655443
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=6.1e-29 Score=254.58 Aligned_cols=285 Identities=24% Similarity=0.296 Sum_probs=252.0
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016465 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
.+.+.|+++.|+++|++++...+..|++.|.+++.++++++..+++.|++|.|+++|.+++.++++.|+|+|.|++.+++
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH
Confidence 34667899999999999999999999999999999898999999999999999999999999999999999999998775
Q ss_pred ccch-hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh------------------------------------
Q 016465 179 NKGT-IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------------------------------------ 221 (389)
Q Consensus 179 ~~~~-i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------------------------------------ 221 (389)
.... +.+.|++++|+++|++++.+.+..|+++|.+|+...+..
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 5555 447899999999999999999999999999996322110
Q ss_pred -HH-HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 222 -VA-IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 222 -~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
.. ....|+++.|++++.+++..+++.|+++|.+++.+.. ....++..|++++++.+|.+.+.+++..++++|.+++.
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 00 1134899999999999999999999999999998665 45778899999999999999999999999999999995
Q ss_pred --ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Q 016465 299 --HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 299 --~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
...++..+++.|++++|++++.+.+.++.+.|+.+|.|++... +....+...|+++.|++++++++++.|+.|+++|
T Consensus 681 ~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 3444567789999999999999999999999999999999876 4667778889999999999999999999999999
Q ss_pred HHHHhhHh
Q 016465 377 ELLQRIDM 384 (389)
Q Consensus 377 ~~l~~~~~ 384 (389)
..|++..+
T Consensus 760 ~~L~~~~~ 767 (2102)
T PLN03200 760 AQLLKHFP 767 (2102)
T ss_pred HHHHhCCC
Confidence 99987655
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=214.27 Aligned_cols=285 Identities=24% Similarity=0.318 Sum_probs=263.1
Q ss_pred CCCCccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 016465 96 TCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 96 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~ 175 (389)
.+..++..|++..+.++-++.|..+|+.+..+|.+++. ..++|..++..|++|.|++++++++.++++.+..++.+++.
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 34556778999999998889999999999999999995 78999999999999999999999999999999999999999
Q ss_pred cccccchhcccC--ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH
Q 016465 176 NDSNKGTIVNAG--AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 253 (389)
Q Consensus 176 ~~~~~~~i~~~g--~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 253 (389)
+...|+.+.+.+ .++.|+.+++++++.++..|..+|.+|+.+.+.+..+++.|.+|.++++++++..........++.
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 999999998755 999999999999999999999999999999999999999999999999998887777778888999
Q ss_pred HhccCCCchHHHHhcCCcHHHHHHHhhcC-cccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHH
Q 016465 254 NLSIYQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 254 ~L~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
|++-.+.|..-+++.|++.+|+.+|...+ ++++-.|+.+|+||+. +..++..+.+.|+++.+..++.++.-.+|....
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 99999999999999999999999999855 4599999999999996 778899999999999999999999999999988
Q ss_pred HHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 332 AVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 332 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.++..|+..+ ..+..+.+.|+++.|+.+..+.+.+++..|+.+|-++++.
T Consensus 398 ac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 398 ACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 8898888765 5678899999999999999999999999999999999754
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=3.9e-28 Score=248.73 Aligned_cols=286 Identities=24% Similarity=0.271 Sum_probs=253.5
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-ccc
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDS 178 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~ 178 (389)
..+.++++.|+.+|...+.+++.+++++|.+++.++.+.+..+.+.|+++.|+++|.+++...++.|+++|.+|+. +++
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3456789999999999999999999999999999889999999999999999999999999999999999999987 446
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHH-HhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI-GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
++..+.+.|++|.|+++|.+++..+++.|+|+|+|++.++++...+ .+.|+++.|+++|++++.+.+..|+++|.+|+.
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999999876655554 467999999999999999999999999999964
Q ss_pred CCCch-------------------------------------HH-HHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016465 258 YQGNK-------------------------------------AR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 258 ~~~~~-------------------------------------~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
..+.. .. ....|+++.|++++.++++.+++.|+++|.+++..
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 33211 00 11358999999999999999999999999999964
Q ss_pred -hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Q 016465 300 -QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 300 -~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 377 (389)
.+....++..|++++++.+|++++.+++..|+++|.+++... .++...+.+.|+++.|++++.+++.+++..|..+|.
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 555778899999999999999999999999999999999754 455667899999999999999999999999999999
Q ss_pred HHHhhHhh
Q 016465 378 LLQRIDMA 385 (389)
Q Consensus 378 ~l~~~~~~ 385 (389)
++....+.
T Consensus 720 nLl~~~e~ 727 (2102)
T PLN03200 720 NLLSDPEV 727 (2102)
T ss_pred HHHcCchH
Confidence 99876643
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.9e-28 Score=204.99 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=252.2
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCC--hHHHHHHHHHHHhcccc
Q 016465 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD--PRTQEHAVTALLNLSIN 176 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~--~~~~~~a~~~L~~l~~~ 176 (389)
.+.+.|++|.++++|.+++.+++++++|+|++++.+++..|+.+.+.|++..++.++.+.. ..+.+.+.|.|.||+..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 4578999999999999999999999999999999999999999999999999999998764 47889999999999874
Q ss_pred c---cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016465 177 D---SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 177 ~---~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
. +....+. ..+|.|.+++.+.++++...|+|++..|+..+. ....+.+.|..+.|+++|.+++..++..+++.+
T Consensus 232 knP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 232 KNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 3 2333333 369999999999999999999999999997764 445567789999999999999999999999999
Q ss_pred HHhccCCCch-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHH
Q 016465 253 FNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 330 (389)
Q Consensus 253 ~~L~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a 330 (389)
+|+...++.+ ..+++.|+++.+..+|.++.+.++..|++.+.|+. ++.+..+.+++.+.+++|+.+|.+.+..++.+|
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999887766 45678999999999999999999999999999997 567778889999999999999999999999999
Q ss_pred HHHHHHHhhcC---HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016465 331 AAVLWAICTGD---AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 331 ~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
+|++.|...+. |+..+.+++.|++..|..++.-.+.++-+.+..+++++-+..+
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 99999998754 7899999999999999999999888888888888888765443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=8.8e-21 Score=180.39 Aligned_cols=277 Identities=22% Similarity=0.270 Sum_probs=239.5
Q ss_pred CccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016465 99 SDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 99 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
.+...+.++.|++.|.+++.+....++..|.+|+. ..+++..+.+.|+++.|.+++.+++.+++..++++|.||+.+++
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH
Confidence 34678899999999999999999999999999997 67899999999999999999999999999999999999999999
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhcc
Q 016465 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~ 257 (389)
.|..+++.|++|.|+.+|.+++ .+..++.+|.+||.+++.+..+...++++.+++++.+ ++..+...++.++.|++.
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 9999999999999999998754 4567899999999999999999999999999998654 466777788999999999
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh-hhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHHH
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLW 335 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~ 335 (389)
+..+...+.+.|+++.|++....... ...++++.|++.++ ..+..+. +.+..|+..+..+ +++....++++|.
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999988765333 33568999999988 4444443 4788888888775 5888999999999
Q ss_pred HHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHhhH
Q 016465 336 AICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQRID 383 (389)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~ 383 (389)
||...+.+..+.+.+.++++.|..++..+ .+++.-.+..++..++..+
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 99987777777788889999999999776 4578888888888876543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.87 E-value=7.3e-20 Score=174.19 Aligned_cols=265 Identities=22% Similarity=0.240 Sum_probs=226.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhccc
Q 016465 107 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA 186 (389)
Q Consensus 107 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 186 (389)
+++-.++..+ ......++..|.+++. +......+.+.|+++.|+++|++++.++...++..|.+|+...+++..+.+.
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444444443 3455678889999996 6788889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHH
Q 016465 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 266 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 266 (389)
|+++.|.+++.+++.++...++++|.|||.+++.+..+++.|++|.|+.+|.++ ..+..++.+|.+|+.+++.+..+.
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999854 466779999999999999999999
Q ss_pred hcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHH
Q 016465 267 RAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 345 (389)
Q Consensus 267 ~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 345 (389)
..++++.+++++.. +++.+...++.++.|++.++.+.+.+.+.++++.|++........ ..+.++.|++.+++...
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLK 485 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHH
Confidence 99999999998776 566777788999999999999999999989999999987664432 25579999999885555
Q ss_pred HHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHH
Q 016465 346 KIARELDAEEALKELSESG-TDRAKRKAGSILELLQ 380 (389)
Q Consensus 346 ~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~ 380 (389)
..+. +.+..|..++..+ +++..-.+..+|.+|.
T Consensus 486 ~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 486 ELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 4443 4778888887776 6778888888888885
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=7.7e-18 Score=156.94 Aligned_cols=282 Identities=24% Similarity=0.282 Sum_probs=234.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc---ccc
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND---SNK 180 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~ 180 (389)
-.++..+.+|.++++.++-.|...|..++.++.+.+..+.+.|+|+.|+.+|.+.+.+++..|+++|.||.... +++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999998743 578
Q ss_pred chhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhH-------------------------------------
Q 016465 181 GTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKV------------------------------------- 222 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~------------------------------------- 222 (389)
-.+.+.++++.++++|+. .|.++++....+||||+.++..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 888899999999999986 789999999999999887644332
Q ss_pred ------------------HHHh-hCcHHHHHHHhc---------------------------------------------
Q 016465 223 ------------------AIGA-AGAIPALIRLLC--------------------------------------------- 238 (389)
Q Consensus 223 ------------------~~~~-~~~i~~L~~ll~--------------------------------------------- 238 (389)
++.+ .|.|..|+..+.
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 1111 144444444443
Q ss_pred ---------------------------------------------------------cCChhhHHHHHHHHHHhccCCC-
Q 016465 239 ---------------------------------------------------------DGTPRGKKDAATAIFNLSIYQG- 260 (389)
Q Consensus 239 ---------------------------------------------------------~~~~~~~~~a~~~L~~L~~~~~- 260 (389)
+.+..+.+.++++|-||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 1123445566667777765433
Q ss_pred ----chHHH-HhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC------hHHHHH
Q 016465 261 ----NKARA-VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNREN 329 (389)
Q Consensus 261 ----~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~------~~~~~~ 329 (389)
.+..+ ..+.+++.++++|...++.+...+..+|.||+.+..++..|. .++++.|++.|.... +++-..
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 22233 567899999999999999999999999999999999999988 569999999997642 677889
Q ss_pred HHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhhHhhh
Q 016465 330 AAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRIDMAV 386 (389)
Q Consensus 330 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~ 386 (389)
++.+|.++...+......+.+.+++++|+.+..+. ++++-+.|..+|..|..+.+..
T Consensus 632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988876 6799999999999998887754
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.3e-17 Score=138.66 Aligned_cols=279 Identities=20% Similarity=0.222 Sum_probs=237.6
Q ss_pred cchhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccc
Q 016465 101 CDRAAIDALLGKLA--NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 101 ~~~~~i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~ 177 (389)
.+..++..++.+|. .++.++....+..+..-+....-+|..+++.++.+.+...|.+. ..++.+.+.+++..|..++
T Consensus 142 ~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dD 221 (461)
T KOG4199|consen 142 FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDD 221 (461)
T ss_pred hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCC
Confidence 45567888888886 44677888899999999988899999999999999999877654 4467788899999998877
Q ss_pred cccc----------hhcccCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC-h---
Q 016465 178 SNKG----------TIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-P--- 242 (389)
Q Consensus 178 ~~~~----------~i~~~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-~--- 242 (389)
+.|- .+...|++..|++.++-+ ++.+...+..+|..|+..++.+..+.+.|+++.|++++.+.+ .
T Consensus 222 DiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 222 DIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred ceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHH
Confidence 6543 355678899999999754 688888999999999999999999999999999999998743 2
Q ss_pred hhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHH
Q 016465 243 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVI 319 (389)
Q Consensus 243 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll 319 (389)
...+.++..|..|+.++.++..+++.|+.+.++.++.. .++.+.+.++.++.-|+ +.+++...+++.|+-...++-+
T Consensus 302 ~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 302 TLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHH
Confidence 34567889999999999999999999999999999865 78889999999999998 6788888899999999999999
Q ss_pred hcCC--hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 320 RTGS--PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 320 ~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
+... ..++.+|++.+.|++..+.+++..++..| ++.|+...+..++.....|..+|+.|.
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 8754 67899999999999999888888888775 678888888888888888999998874
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=3.8e-18 Score=165.91 Aligned_cols=260 Identities=23% Similarity=0.261 Sum_probs=225.9
Q ss_pred HHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC------------ChHHHHHHHHHHHhccccc-cccchhc-ccCC
Q 016465 123 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST------------DPRTQEHAVTALLNLSIND-SNKGTIV-NAGA 188 (389)
Q Consensus 123 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~------------~~~~~~~a~~~L~~l~~~~-~~~~~i~-~~g~ 188 (389)
.|+..|..++. +.++|..+.+.|++..+-++|.-+ ...+|..|..+|.||...+ .+|..++ ..|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67777777876 679999999999999999988531 3468999999999998754 6787887 4899
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHHHhhCcHHHHHHH-hccCChhhHHHHHHHHHHhcc-CCCchHH
Q 016465 189 IPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSI-YQGNKAR 264 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~L~~-~~~~~~~ 264 (389)
+..++..|.+..+++....+.+|.||+...+ .+..+.+.|-+..|... +....+...+..+.+|+||+. +.+|+..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999988999999999999997743 45556667999988877 455566788899999999987 5678988
Q ss_pred HHh-cCCcHHHHHHHhhc----CcccHHHHHHHHHHHhc----ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 016465 265 AVR-AGIVPPLMRFLKDA----GGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 265 ~~~-~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
|.. .|++..|+.+|... .-.+.+.+-++|.|++. .++.|+.+.+++++..|++.|++.+-.+..+++++||
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 987 58899999999763 34678899999999874 6778899999999999999999999999999999999
Q ss_pred HHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 336 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
||...+++.++.+++.|.+..|..|+++.+..+.+.++.+|+||-.++
T Consensus 556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999998776
No 14
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.78 E-value=1.9e-19 Score=122.13 Aligned_cols=72 Identities=53% Similarity=0.943 Sum_probs=62.4
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcC
Q 016465 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNG 79 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~ 79 (389)
+|++|.||||+++|.|||++++||+|+|.+|++|+..+...||.|+.+++..++.+|..++..|++|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999877889999999999999999999999999998764
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.3e-16 Score=129.76 Aligned_cols=267 Identities=16% Similarity=0.232 Sum_probs=221.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhcc-ccccccchhcccC
Q 016465 111 GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLS-INDSNKGTIVNAG 187 (389)
Q Consensus 111 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g 187 (389)
.+-.+++..+..+++.+|..+..+.++ +.+..++..++++|... +.++-...+..+..-+ .++.+|+.+++.+
T Consensus 114 ~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 114 ELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 333466788899999999999876554 56777899999999653 5566666666665533 4778899999999
Q ss_pred ChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhh----------HHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHh
Q 016465 188 AIPDIVDVLKN-GSMEARENAAATLFSLSVIDENK----------VAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNL 255 (389)
Q Consensus 188 ~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~----------~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L 255 (389)
+++.+...|.. +...+...+.+++..|..+++.+ ..+...|++..|++.+.-. ++.+....+.+|..|
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 99999977754 45568888999999998777644 3455668899999998754 688899999999999
Q ss_pred ccCCCchHHHHhcCCcHHHHHHHhh-cCcc---cHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc--CChHHHHH
Q 016465 256 SIYQGNKARAVRAGIVPPLMRFLKD-AGGG---MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPRNREN 329 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~---~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~--~~~~~~~~ 329 (389)
+..++....+.+.|++..|++++.+ .+.. ....++..|..|+++++.+..|++.|+.+.++.++.. .+|.+.+.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999999999988 3333 3457889999999999999999999999999999854 57999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHh
Q 016465 330 AAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQR 381 (389)
Q Consensus 330 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~ 381 (389)
++.++.-|+...|+....+++.|+-...++.++.. ...+++.|.+++++|..
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765 46799999999999954
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.75 E-value=2.7e-16 Score=133.22 Aligned_cols=226 Identities=22% Similarity=0.233 Sum_probs=189.5
Q ss_pred HhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 016465 143 AEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 221 (389)
Q Consensus 143 ~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 221 (389)
.+.+-++.|+.+|+. .++.+++.++.++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 566778999999986 5899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhCcHHHHHHHhccC--ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016465 222 VAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
..+.. .++.+++.+.+. +..++..++++|.||+..++.+..+.. .++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 87743 466666654433 678889999999999988777666643 799999999999999999999999999999
Q ss_pred hhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcC-------------H-HHHHHHHhcC-cHHHHHHHHHh
Q 016465 300 QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGD-------------A-EQLKIARELD-AEEALKELSES 363 (389)
Q Consensus 300 ~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-------------~-~~~~~~~~~~-~~~~L~~ll~~ 363 (389)
+.....++..+++..++.+++.. +.++-..++.+..|+..+- . .....+.+.+ +.+.|..+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 99999999989999999999886 5777888999999986531 1 1112222333 67788888888
Q ss_pred CChHHHHHH
Q 016465 364 GTDRAKRKA 372 (389)
Q Consensus 364 ~~~~~~~~a 372 (389)
+|++||.+.
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 999998764
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.72 E-value=9.1e-16 Score=130.02 Aligned_cols=194 Identities=23% Similarity=0.292 Sum_probs=172.0
Q ss_pred cchhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016465 101 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
-+.+.++.|+.+|.. .|+.+++.++.++.+.+. .+.+++.+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 466789999999995 589999999999999875 779999999999999999999999999999999999999999999
Q ss_pred cchhcccCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 180 KGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
+..+-. .++.+++.+.+. +.+++..++++|.+|+..++.+..+. +.++.++.+|.+++..++..++++|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 888753 577777765543 67888999999999998888777664 478999999999999999999999999999
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhc-CcccHHHHHHHHHHHhcC
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILASH 299 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 299 (389)
++.....++..+++..++.++... +.++...++.++.||..+
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999874 678899999999999754
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=1.2e-14 Score=137.21 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=225.6
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
..+..+.+...|.++++.++..+++.|.++..++......+.+.++++.++..+.+++..+...|+.+|.+++..+....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45678889999999999999999999999998877777888889999999999999999999999999999999888888
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
.+++.+.+..|..++..++..++..+..++.+++... +....+...|+++.++..+.++|.-++.+++.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 8888888999999998888899999999999998654 566666778999999999999999999999999999999888
Q ss_pred chHHHHhcCCcHHHHHHHhhcCccc------HHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHH
Q 016465 261 NKARAVRAGIVPPLMRFLKDAGGGM------VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 334 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~------~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L 334 (389)
+...+.+.|+++.|.+++.+.+.+- .-..+...++++...+..-.-.-..++..+.+++.+.++..+..|+.++
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999998733222 1233466777776422211111134666777888888999999999999
Q ss_pred HHHhhcCHHHHHHH-Hhc-Cc----HHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 335 WAICTGDAEQLKIA-REL-DA----EEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 335 ~~l~~~~~~~~~~~-~~~-~~----~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+.++... +....+ ... +. +...-....++..++|.++..++.++-.
T Consensus 315 g~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 315 GQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9999654 444444 332 23 3334444456678899999999999843
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.64 E-value=2.9e-16 Score=104.43 Aligned_cols=63 Identities=60% Similarity=0.986 Sum_probs=58.8
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
+|.||||+++|.+||.++|||+||+.||.+|+.. ...||.|+.+++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 56899999999888999999999999876
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=4.2e-14 Score=123.03 Aligned_cols=279 Identities=13% Similarity=0.082 Sum_probs=219.1
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-------ChHHHHHHHHHHHhc
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLNL 173 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-------~~~~~~~a~~~L~~l 173 (389)
.++++++.|.+..+|+|.++..+..++|+++++++.++|..+.+.|+-..+++.|+.. +.+....+.+.|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999999999999988888888652 346677888899986
Q ss_pred cc-cccccchhcccCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhccC-ChhhHHH
Q 016465 174 SI-NDSNKGTIVNAGAIPDIVDVLKN--GSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDG-TPRGKKD 247 (389)
Q Consensus 174 ~~-~~~~~~~i~~~g~l~~L~~lL~~--~~~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~ 247 (389)
.. +++.+.++.+.|+++.|...+.- .+.+..+.......||.+.. .......+......+++++... +++..+.
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 55 55889999999999999888853 45666666666666664332 1234444556777788888654 6778888
Q ss_pred HHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-cCcccHH-------HHHHHHHHHhcChhhHHHhhccC-ChHHHHHH
Q 016465 248 AATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVD-------EALAILAILASHQEGKTAIGQAE-PIPVLMEV 318 (389)
Q Consensus 248 a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~-------~a~~~L~~l~~~~~~~~~i~~~~-~v~~L~~l 318 (389)
....|...+.++..+-.+++.|.+..++++++. ....-++ .+.....-|...++.-+.+...+ +++.+..+
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999999999999999987 3322222 33344444444555555665555 89999999
Q ss_pred HhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh-----CChHHHHHHHHHHHHHH
Q 016465 319 IRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-----GTDRAKRKAGSILELLQ 380 (389)
Q Consensus 319 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~ 380 (389)
+.+.+.+....+.-+++|++..+ +.+..+++.+++..|++++.. ++.+++..+..+|+++.
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 99999999999999999999987 566778999999999997753 46788889999999884
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.59 E-value=1.1e-12 Score=123.80 Aligned_cols=282 Identities=16% Similarity=0.176 Sum_probs=219.1
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccc
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN 179 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~ 179 (389)
.+.+.++.++..+.++|.++...|+..|..++. .+...+.+.+.+.+..|.+++...+..+|..+..++.+++.. ++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 456789999999999999999999999999997 455666787888899999999888889999999999999865 466
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhh-----H-HHHHHHHH
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG-----K-KDAATAIF 253 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-----~-~~a~~~L~ 253 (389)
...+.+.|+++.++..|+++|.-++..++.+|..|+..+.+...+.+.|+++.|.+++.+.+.+- . ...+...+
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 67777899999999999999999999999999999998889999999999999999997543222 1 12235666
Q ss_pred HhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHh-hcc-CC----hHHHHHHHhcCChHHH
Q 016465 254 NLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAI-GQA-EP----IPVLMEVIRTGSPRNR 327 (389)
Q Consensus 254 ~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~-~~----v~~L~~ll~~~~~~~~ 327 (389)
+++...+....-.-..++..+.+++.+.+...+..|+.+++.++...+++..+ ... +. +..+.....++..++|
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 67664322222222456667777778889999999999999999999999988 443 23 4455555556678899
Q ss_pred HHHHHHHHHHhhcCH----HHHHHH-------HhcCcHH-HHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 328 ENAAAVLWAICTGDA----EQLKIA-------RELDAEE-ALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 328 ~~a~~~L~~l~~~~~----~~~~~~-------~~~~~~~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
..++.+|.++....+ +....+ ...+-.. .++.+++.+-+++|..+..+|..|+.++
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 999999999844221 111111 1223444 7778888888999999999999987654
No 22
>PRK09687 putative lyase; Provisional
Probab=99.58 E-value=1.8e-13 Score=118.85 Aligned_cols=225 Identities=18% Similarity=0.117 Sum_probs=158.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHH-hcCCChHHHHHHHHHHHhccccccccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
...++.+.++++++++.++..|++.|..+...... ....++.|..+ ++++++.+|..|+.+|+++.......
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-
Confidence 34566777777777888888888888887532110 11345667666 45567788888888888775322111
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
...+++.+...+.++++.++..++++|..+. ...+++.|+.++.+++..++..|+.+|+.+...
T Consensus 126 ---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--- 189 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--- 189 (280)
T ss_pred ---chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---
Confidence 1224556667777778888888888886553 234678888888888888888888888887221
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
...+++.|+.+|.+.+..++..|+..|+.+... .+++.|++.+.+++ ++..++.+|.++...
T Consensus 190 -----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 190 -----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK----------RVLSVLIKELKKGT--VGDLIIEAAGELGDK- 251 (280)
T ss_pred -----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence 124567788888888888888888888875432 47888888888765 566777777776652
Q ss_pred HHHHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHH
Q 016465 342 AEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILEL 378 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~ 378 (389)
..++.|..++. ++|+.++.+|.++|..
T Consensus 252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 36888999997 7799999999998864
No 23
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=2.2e-13 Score=118.24 Aligned_cols=227 Identities=16% Similarity=0.093 Sum_probs=178.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
.++.|+..|.+.|..++..|++.|..+.. ..+++.+..++.++++.+|..|+++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 47889999999999999999999987753 23678888999999999999999999998643221
Q ss_pred ccCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016465 185 NAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 185 ~~g~l~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
....++.|..+ ++++++.++..|+.+|+++....... ...++..+...+.+.+..++..++++|..+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------- 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------- 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------
Confidence 22357778877 67889999999999999986432211 1234566777888889999999999997652
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHH
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
....++.|+.+|.++++.++..|+.+|+.+....+ .+++.|+..+.+.+..+|..|+..|..+-. +
T Consensus 157 ---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~- 222 (280)
T PRK09687 157 ---DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD--K- 222 (280)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC--h-
Confidence 33478999999999999999999999999843221 367889999999999999999999987543 1
Q ss_pred HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 344 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 344 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+++.|+..+++++ ++..+..+|..+...
T Consensus 223 --------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 223 --------RVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred --------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 37888999888866 667788888877543
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.56 E-value=9.6e-14 Score=135.99 Aligned_cols=242 Identities=21% Similarity=0.217 Sum_probs=199.3
Q ss_pred cchhHHHHHHHhhc-----CC----C---HHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcCCChHHHHHHH
Q 016465 101 CDRAAIDALLGKLA-----NG----N---VEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEHAV 167 (389)
Q Consensus 101 ~~~~~i~~l~~~l~-----~~----~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~~~~~~~~~a~ 167 (389)
-+.|+++.+-++|. +. | ..++..|..+|.||+.++..++..+... |++..++..|.+...++....+
T Consensus 336 ~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~A 415 (2195)
T KOG2122|consen 336 NELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYA 415 (2195)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHH
Confidence 34566666666553 11 1 3478899999999999988888887765 8999999999998889999999
Q ss_pred HHHHhccccc--cccchhcccCChHHHHHHH-ccCCHHHHHHHHHHHHHhcCC-chhhHHHHhh-CcHHHHHHHhccC--
Q 016465 168 TALLNLSIND--SNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVI-DENKVAIGAA-GAIPALIRLLCDG-- 240 (389)
Q Consensus 168 ~~L~~l~~~~--~~~~~i~~~g~l~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~-~~i~~L~~ll~~~-- 240 (389)
.+|.||+... ..++.+.+.|-+..|+... ....+......+.+||||+.. .+++..|... |++..|+.+|.-.
T Consensus 416 svLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q 495 (2195)
T KOG2122|consen 416 SVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ 495 (2195)
T ss_pred HHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC
Confidence 9999999844 4566777889888888765 445556677899999999876 4788887664 9999999999743
Q ss_pred --ChhhHHHHHHHHHHhcc----CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHhhccCChH
Q 016465 241 --TPRGKKDAATAIFNLSI----YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEPIP 313 (389)
Q Consensus 241 --~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~ 313 (389)
...+.+.+-++|.|.+. +...++.+.+++.+..|+..|++.+-.++.+++++||||+ .+++.++.+++.|++.
T Consensus 496 s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~ 575 (2195)
T KOG2122|consen 496 SNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVP 575 (2195)
T ss_pred cchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHH
Confidence 35677888889988765 4455667778999999999999999999999999999998 6888899999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016465 314 VLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
.|..++++.+..+-.-++.+|.||....+
T Consensus 576 mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 576 MLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999987654
No 25
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.50 E-value=5.7e-12 Score=113.85 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=203.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccccchh
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
....++.+|..+|.-+...|+..|..+...+..........-.+..|...+++. +...+..++.+|..|...+++|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 456677788888999999999999998764433211111111334555666553 4677888999999999999999999
Q ss_pred cccCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccCCC
Q 016465 184 VNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~~ 260 (389)
.+.++++.|+.+|+.. +..+++.++-++|-|+.+++....+...+.|+.++++++.. .+++.+-++.+|.|+...+.
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 8888999999999763 56899999999999999988777777789999999999864 57888889999999987542
Q ss_pred -------chHHHHhcCCcHHHHHHHhh--cCcccHHHHHH-------HHHHHhcChh-----------------------
Q 016465 261 -------NKARAVRAGIVPPLMRFLKD--AGGGMVDEALA-------ILAILASHQE----------------------- 301 (389)
Q Consensus 261 -------~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~-------~L~~l~~~~~----------------------- 301 (389)
....+++.|+++.+-.+... .++++.+..-. -+..+++.++
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 22445666665544444433 56665543222 1222332111
Q ss_pred -hHHHhhcc--CChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Q 016465 302 -GKTAIGQA--EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 302 -~~~~i~~~--~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 377 (389)
+-..+-+. ..++.|+++|.. .++.+..-|+.=|+.++..-|..+..+.+.|+-..+++++.++++++|..|..+++
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22233332 257889999954 46777888999999999998888888999999999999999999999999999998
Q ss_pred HHH
Q 016465 378 LLQ 380 (389)
Q Consensus 378 ~l~ 380 (389)
.|-
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 773
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.9e-11 Score=106.27 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=204.2
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
++....+..|++.|..++.+........|..++. -.+++..+.+.|++..|++++...+++++...+..+.|++.+...
T Consensus 300 MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~gl 378 (791)
T KOG1222|consen 300 MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGL 378 (791)
T ss_pred HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccc
Confidence 3556788999999998888888888899999986 568899999999999999999999999999999999999999999
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHH----------------------------
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIP---------------------------- 231 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~---------------------------- 231 (389)
+..++..|.+|.+..+|.++... .-|+..+..+|.+++.+..+.....|+
T Consensus 379 r~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 379 RPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred cHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99999999999999999875431 123344444444433333222222222
Q ss_pred ---------------------------------------------------HHHHHhcc-CChhhHHHHHHHHHHhccCC
Q 016465 232 ---------------------------------------------------ALIRLLCD-GTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 232 ---------------------------------------------------~L~~ll~~-~~~~~~~~a~~~L~~L~~~~ 259 (389)
.|...++. +++....+++++|.||...+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 12222221 23344556666777776665
Q ss_pred CchHHHHh-cCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHH
Q 016465 260 GNKARAVR-AGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVL 334 (389)
Q Consensus 260 ~~~~~~~~-~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L 334 (389)
-....+++ ...+|-+-..|.. ...+++...+-.++.++........+...+.++.++++|+.. +++.....+.+.
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 55555554 5677777766654 345667777777888888877777788899999999999874 556656666666
Q ss_pred HHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016465 335 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
..+..+.....-.+.+...-..|+.++++.+.++|+-+-.+|..+++++.
T Consensus 617 ~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 617 LQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 77777643333344455666789999999999999988888888877653
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.48 E-value=1.3e-12 Score=99.50 Aligned_cols=118 Identities=20% Similarity=0.287 Sum_probs=110.3
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
.+++.|+++.+++++.+.+..++..++.+|.+++.. ++....+.+.|+++.+++++.+.+++++..++++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999999999999999999999987 7888888889999999999999999999999999999999988
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 343 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 343 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.....+.+.|+++.|.+++.+++.++++.+.++|.+|++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888889999999999999999999999999999999863
No 28
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.48 E-value=2.4e-14 Score=84.97 Aligned_cols=39 Identities=38% Similarity=0.911 Sum_probs=31.0
Q ss_pred CcCCcccCcCCeecCCccCccHHHHHHHHhcCC---CCCCCC
Q 016465 14 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGH---KTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~---~~cp~c 52 (389)
||||+++|.+||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998532 479987
No 29
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.45 E-value=4e-12 Score=119.31 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=185.1
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccc-cccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC---chhhH
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---DENKV 222 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~ 222 (389)
-++..+.+|.+.++.++-.|..-+-.++. +.+.+..+...|+|+.|+.+|.+.+.+++..|+++|.||+.. ++++.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46788899999999999999999999887 457788888999999999999999999999999999999865 35788
Q ss_pred HHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCC-----------------------------------------
Q 016465 223 AIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQG----------------------------------------- 260 (389)
Q Consensus 223 ~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~----------------------------------------- 260 (389)
.+.+.++++.++++|+. .|.++++....+|+||++++.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n 393 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN 393 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence 88899999999999985 677888888888888855421
Q ss_pred --------------chHHHHh-cCCcHHHHHHHhh------cCcccHHHHHHHHHHHhcChh------------------
Q 016465 261 --------------NKARAVR-AGIVPPLMRFLKD------AGGGMVDEALAILAILASHQE------------------ 301 (389)
Q Consensus 261 --------------~~~~~~~-~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~------------------ 301 (389)
.+.++.+ .|.|+.|+..+.+ .+...+++++.+|.||+..-+
T Consensus 394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence 2333444 4778888888764 566778999999999985211
Q ss_pred ---------------hHH---------------------HhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCH--
Q 016465 302 ---------------GKT---------------------AIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA-- 342 (389)
Q Consensus 302 ---------------~~~---------------------~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~-- 342 (389)
.+. .+....+|..-+.+|.. .++.+.++++.+|-||+....
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 000 01112234554556653 468889999999999998652
Q ss_pred --HHHHHH-HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 343 --EQLKIA-RELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 343 --~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
..+..+ .++.+++.|+++++.+++.+.+.++.+|++|+...
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 333333 77889999999999999999999999999997643
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.44 E-value=2.1e-12 Score=98.42 Aligned_cols=117 Identities=37% Similarity=0.487 Sum_probs=106.1
Q ss_pred HHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch
Q 016465 141 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE 219 (389)
Q Consensus 141 ~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~ 219 (389)
.+.+.|+++.|++++.+++..++..++++|.+++.+ ++....+.+.|+++.++++|.++++.++..++++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999987 6778888888999999999999999999999999999998874
Q ss_pred -hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 220 -NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 220 -~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
....+...|+++.+++++.+.+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45566778999999999999999999999999999863
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.43 E-value=3.5e-11 Score=105.14 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=222.4
Q ss_pred cchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CC-------hHHHHHHHHHHH
Q 016465 101 CDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TD-------PRTQEHAVTALL 171 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~-------~~~~~~a~~~L~ 171 (389)
.+...+..++++|.+. .++..+.....|...+. ++..+-.+.+.|.+..++.+++. .+ ......++....
T Consensus 220 ~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~v 298 (604)
T KOG4500|consen 220 KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDV 298 (604)
T ss_pred ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhh
Confidence 3445666677777654 45566667777777774 77888889999999999999977 21 122344444444
Q ss_pred hccccccccchhcc-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-----CChhhH
Q 016465 172 NLSINDSNKGTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-----GTPRGK 245 (389)
Q Consensus 172 ~l~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~ 245 (389)
-|...++....+.. ..+++.+...+.+.+...+..+.-+++|++..++...++++.+.+..|++++.. ++.+.+
T Consensus 299 llltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~q 378 (604)
T KOG4500|consen 299 LLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQ 378 (604)
T ss_pred hhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhH
Confidence 45555555555554 448999999999999999999999999999999999999999999999999853 467888
Q ss_pred HHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh-hHHHhhc-cCChHHHHHHHhcCC
Q 016465 246 KDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQ-AEPIPVLMEVIRTGS 323 (389)
Q Consensus 246 ~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~-~~~v~~L~~ll~~~~ 323 (389)
..++.+|.|+.-...++..+...|+.+.++..+....+.++..-++.+.-+...-+ ...++.+ ...+..|+.+-.+++
T Consensus 379 hA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 379 HACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 89999999999999999999999999999999999999999988888887765444 3334443 446788888888877
Q ss_pred hH-HHHHHHHHHHHHhhcC--HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 324 PR-NRENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 324 ~~-~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
.. +.-+..+.|..+..+. .+....+.+.|++..++..+-..+-..+..|..+|..+...+-.
T Consensus 459 ~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~ 523 (604)
T KOG4500|consen 459 FAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLI 523 (604)
T ss_pred cchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhcc
Confidence 44 7777888888888874 45666777889999999999888888999999888887655443
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.1e-10 Score=103.37 Aligned_cols=254 Identities=18% Similarity=0.176 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc
Q 016465 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK 197 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~ 197 (389)
......|+..|.+++. +......++...++..|++.|...+.++.......|..|+--.+++..+.+.|++..|+++..
T Consensus 277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 3455668888899996 455666788889999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHH
Q 016465 198 NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRF 277 (389)
Q Consensus 198 ~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~l 277 (389)
...++++...+..+.|||.+...+..+++.|.+|.+..++.++.. ..-|+..|..++.++..+..+.....|+.+.+.
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643 345788899999999999999999999999998
Q ss_pred Hhh-cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHH
Q 016465 278 LKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEA 356 (389)
Q Consensus 278 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 356 (389)
+.. ...++-...+..--|||-+..+.+.+.+..++..|++.--...+. --..++.|++.+....+..+.+ .+..
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvgd 508 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVGD 508 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHHH
Confidence 876 444554444455568999999988888888898888775433222 2455778888876545554444 3556
Q ss_pred HHHHHHhC-ChHHHHHHHHHHHHH
Q 016465 357 LKELSESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 357 L~~ll~~~-~~~~~~~a~~~L~~l 379 (389)
|...+... ++...-.+..+|.+|
T Consensus 509 La~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 509 LAGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred HHHHhhcCchHHHHHHHHHHHhhc
Confidence 66666655 344455555555555
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=2e-10 Score=116.31 Aligned_cols=93 Identities=24% Similarity=0.198 Sum_probs=63.3
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
+...++.|++.|.++++.+|..|+..|..+.. .+.++.|...|.+++..+|..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 56678899999999999999999999988753 236788888888888888888888887663211
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
...+.|...|+++++.++..|+.+|..+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 0123444445555555555555544443
No 34
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.35 E-value=6.4e-13 Score=104.79 Aligned_cols=59 Identities=32% Similarity=0.675 Sum_probs=50.3
Q ss_pred CCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc---------------CCCCCCCCCccCcCCCCCccH
Q 016465 7 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA---------------GHKTCPKTQQTLLHTALTPNY 65 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~---------------~~~~cp~c~~~~~~~~~~~n~ 65 (389)
+..+++.||||++.+.+|++++|||.||+.||.+|+.. +...||.|+.+++...+.+.+
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45677999999999999999999999999999999852 235799999999877776654
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=2.2e-10 Score=116.00 Aligned_cols=216 Identities=22% Similarity=0.178 Sum_probs=167.7
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
..+.++.|++.|.++++.++..|+..|..+.... ...+.|...|.++++.+|..|+.+|..+..
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 4567888888898888899999988888775311 123577788888888999999888877631
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
+-...|+..|.++++.++..|+.+|..+. ..+.|..++.+++..++..++.+|..+...
T Consensus 714 -----~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--- 772 (897)
T PRK13800 714 -----GDAALFAAALGDPDHRVRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGAG--- 772 (897)
T ss_pred -----CCHHHHHHHhcCCCHHHHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc---
Confidence 22456778888889999998888888752 124567788888899999999988877542
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
....++.|..++.++++.++..|+..|..+...+ ..+..+...+.+.++.+|..|+.+|..+...
T Consensus 773 -----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~- 837 (897)
T PRK13800 773 -----GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD- 837 (897)
T ss_pred -----cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-
Confidence 1223678889999889999999999998875432 1346688888888999999999999876532
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 342 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
..++.|..++.+++..||..|.++|..+
T Consensus 838 ----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 838 ----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2568999999999999999999999887
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.33 E-value=3.8e-11 Score=107.00 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=169.0
Q ss_pred CHHHHHHHhcC--CChHHHHHHHHHHHhccccccccchhc-c------cCChHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 016465 147 AIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIV-N------AGAIPDIVDVLKNGSMEARENAAATLFSLSVI 217 (389)
Q Consensus 147 ~v~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~-~------~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~ 217 (389)
....++.+|+. ++.++....+..+..+..+.+.+..++ . .....++++++..++..+...++.+|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45666666654 478899999999999877665554433 2 23678899999999999999999999999877
Q ss_pred chhhHHHHhhCcHHHHHHHhcc----CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh-----h--cCcccH
Q 016465 218 DENKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK-----D--AGGGMV 286 (389)
Q Consensus 218 ~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~-----~--~~~~~~ 286 (389)
.+....-...+.++.+++.+.+ ++.+.+..++.+|.+|...++.|..+.+.++++.+.+++. + ....++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 6554444335677788877765 3455678899999999999999999999999999999992 2 445678
Q ss_pred HHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcCHH-HHHHHHhcCcHHHHHHHHHhC
Q 016465 287 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG 364 (389)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~~ 364 (389)
.+++.++|.|+.+++....+.+.+.++.|+++++.. .+.+.+-++.+|.|+...+++ ....|+..|+++.+..+...+
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 899999999999999999999988999999999875 588889999999999987643 788888888888887777654
Q ss_pred --ChHHHHHHHHHH
Q 016465 365 --TDRAKRKAGSIL 376 (389)
Q Consensus 365 --~~~~~~~a~~~L 376 (389)
|+++.+-...+-
T Consensus 296 ~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 296 WSDEDLTEDLEFLK 309 (312)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 788877655443
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.3e-10 Score=105.34 Aligned_cols=259 Identities=18% Similarity=0.159 Sum_probs=207.0
Q ss_pred chhHHHHHHHhhcCC-CHHHHHHHHHHHHHH-HhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccc-cc
Q 016465 102 DRAAIDALLGKLANG-NVEEQRAAAGELRLL-AKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSI-ND 177 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l-~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~-~~ 177 (389)
..+.+.+|++-|... |+..+.+|+..|..+ ..++.+....+--.-.+|.|+.+|+++ +.++...|+++|.+|+. .+
T Consensus 165 asSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 165 ASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred chHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 345788888888866 888899998888764 455555555555556899999999986 89999999999999987 55
Q ss_pred cccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 178 SNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+....+++.++||.|+.-|. -...++.+.++.+|-.++... -..+.+.|++...+.+|.--+..+++.|+.+..|.|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778889999999997775 466889999999999998654 345678899999999998778889999999999999
Q ss_pred cCCC--chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc----ChhhHHHhhccCChHHHHHHHhcCC----hHH
Q 016465 257 IYQG--NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGS----PRN 326 (389)
Q Consensus 257 ~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~v~~L~~ll~~~~----~~~ 326 (389)
..-. ....++ ..+|.|..+|...+....+.++-++..++. .++--+++...|.+....+++.-.. ..+
T Consensus 323 ksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 323 KSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred hcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccc
Confidence 7532 223333 368999999999999999999999988874 3444677888999999999997653 334
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC
Q 016465 327 RENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 364 (389)
Q Consensus 327 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 364 (389)
....+..|..++.+.+.....+.+.++...|..++...
T Consensus 401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 55677788888888888899999999999999988643
No 38
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.31 E-value=9.6e-10 Score=96.23 Aligned_cols=275 Identities=15% Similarity=0.096 Sum_probs=202.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcC-CHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchh
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG-AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
-...+++|..+|.-....+.+.+..++.-....- ...+-. ....|-..+++ .+.+....++++|-.+...+++|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 4567788888888888878888888876432211 110000 22344445555 56778889999999999999999999
Q ss_pred cccCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccCCC
Q 016465 184 VNAGAIPDIVDVLK--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 184 ~~~g~l~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~~ 260 (389)
+..+++..++..+. ..+..+++..+.++|-|+.++.....+...+.|+.|.+++++. .+++.+-.+.++.|+...++
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 98888999999984 3468899999999999999998888887779999999999865 57788888999999998764
Q ss_pred c-------hHHHHhcCCcHHHHHHHhh--cCcccHHHHHH-------HHHHHhcChh-----------------------
Q 016465 261 N-------KARAVRAGIVPPLMRFLKD--AGGGMVDEALA-------ILAILASHQE----------------------- 301 (389)
Q Consensus 261 ~-------~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~-------~L~~l~~~~~----------------------- 301 (389)
. ...++..++.+.+-.+... +++++....-. ....|++.++
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 2 2445556655555444443 55555443222 2222333222
Q ss_pred -hHHHhhc--cCChHHHHHHHhcCC-hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Q 016465 302 -GKTAIGQ--AEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 302 -~~~~i~~--~~~v~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 377 (389)
+...+.+ ...++.|+.+|+.++ +.+-.-|+.=++......|+....+.+.|+-..+++++.++|++||..|..++.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 2223333 236889999998765 777888999999999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 016465 378 LLQR 381 (389)
Q Consensus 378 ~l~~ 381 (389)
.+--
T Consensus 435 ~lm~ 438 (442)
T KOG2759|consen 435 KLMV 438 (442)
T ss_pred HHHh
Confidence 7743
No 39
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=4.5e-12 Score=112.75 Aligned_cols=70 Identities=20% Similarity=0.471 Sum_probs=62.5
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHH
Q 016465 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~ 76 (389)
..+...+.|+||++++.+|++++|||+||..||..|+.. ...||.|+..+....+..|..+..+++.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 357788999999999999999999999999999999985 4579999999887788899999999988754
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.22 E-value=5.2e-10 Score=99.72 Aligned_cols=223 Identities=17% Similarity=0.150 Sum_probs=163.3
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHHhhChhhhHHHHh------cCCHHHHHHHhcCCChHHHHHHHHHHHhccccc
Q 016465 106 IDALLGKLA--NGNVEEQRAAAGELRLLAKRNADNRVCIAE------AGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 106 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 177 (389)
...++.+|+ +.+.++....+..+..+..+++...+.+.. ......+++++.++|.-++..|+..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 334444444 467889999999999999888776666665 236889999999999999999999999987765
Q ss_pred cccchhcccCChHHHHHHHcc----CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh-----c--cCChhhHH
Q 016465 178 SNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-----C--DGTPRGKK 246 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll-----~--~~~~~~~~ 246 (389)
+.+..-...+.++.++..|.+ ++.+.+..++.+|.+|...+..+..+.+.++++.+.+++ . ..+..++.
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 544443335667888888875 345667899999999999999999999999999999999 2 23577889
Q ss_pred HHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChh--hHHHhhccCChHHHHHHHhc--
Q 016465 247 DAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPVLMEVIRT-- 321 (389)
Q Consensus 247 ~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~~~v~~L~~ll~~-- 321 (389)
.++-+++-|+.+++....+...+.++.|+++++. ..+.+.+-++.+|.|+..... ....++..|+++.+-.+...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999987 667889999999999997766 67777776666555555443
Q ss_pred CChHHHH
Q 016465 322 GSPRNRE 328 (389)
Q Consensus 322 ~~~~~~~ 328 (389)
.|+++.+
T Consensus 297 ~Dedl~e 303 (312)
T PF03224_consen 297 SDEDLTE 303 (312)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 3555554
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.20 E-value=9.3e-12 Score=73.23 Aligned_cols=38 Identities=37% Similarity=0.999 Sum_probs=33.1
Q ss_pred CcCCcccCcCC-eecCCccCccHHHHHHHHhcCCCCCCCC
Q 016465 14 CPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~p-v~~~c~h~~c~~ci~~~~~~~~~~cp~c 52 (389)
||||.+.+.+| +.++|||+||+.|+.+|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6789987
No 42
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-11 Score=99.02 Aligned_cols=57 Identities=32% Similarity=0.700 Sum_probs=50.1
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCCCccCcCCCCCccH
Q 016465 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTALTPNY 65 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~~~~~~~n~ 65 (389)
-..|.|.||++..+|||++.|||-||..||.+|+.. +...||+|+..++.+++.|-+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456999999999999999999999999999999973 345799999999888887754
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.16 E-value=3.9e-09 Score=101.90 Aligned_cols=256 Identities=20% Similarity=0.217 Sum_probs=177.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
.+..+.+-|.++++.++..|+++|.++.. ++.... .++.+.+++.++++.+|..|+.++..+....+. .+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHH
Confidence 56778888889999999999999999883 333333 468899999999999999999999998754221 222
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHh-cCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016465 185 NAGAIPDIVDVLKNGSMEARENAAATLFSL-SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L-s~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
.. .++.+.++|.+.++.+...|+.++..+ ...+... -.-...+..|.+++...++-.+...++.|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 22 689999999999999999999999999 2211111 1123455666666667788888888888887765443222
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHH
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
. ...+++.+..++.+.++.+...++.++..+..... .-..+++.|..++.+.++.++..++..|..++...+.
T Consensus 228 ~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 D--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred h--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 1 14567778888888788888888888887777655 2223677888888877788888888888888776622
Q ss_pred HHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhhHhh
Q 016465 344 QLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 344 ~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
.. . ........+. +++..+|..+..+|..+....++
T Consensus 301 ~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 301 AV----F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH
T ss_pred hh----h--hhhhhhheecCCCChhHHHHHHHHHhhcccccch
Confidence 22 1 1222233444 66777788888887777665443
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.2e-09 Score=100.54 Aligned_cols=270 Identities=15% Similarity=0.129 Sum_probs=187.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHH-h---cCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA-E---AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~---~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
...+|.|.++|.++|...++-|..+|..++.++.+.-+.-. . .-.+|.++++.+++++.+|..|+.++..+.-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 56899999999999988999999999999987765433211 1 1368999999999999999999999877543221
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016465 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
..-...=..+++.+..+-.+.++++|...+.++..|......+-.-.-.++++.+++...+.++++..+|+.....++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 11111124567778888888999999999999999976654433222247888888888888999999999999999988
Q ss_pred CCchHHHHh--cCCcHHHHHHHhhcCc-----------------------------------------------------
Q 016465 259 QGNKARAVR--AGIVPPLMRFLKDAGG----------------------------------------------------- 283 (389)
Q Consensus 259 ~~~~~~~~~--~~~i~~L~~ll~~~~~----------------------------------------------------- 283 (389)
+-.+..+.. ..++|.|++-+..++.
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 844443333 3566666653322111
Q ss_pred ---ccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh----cCChHHHHHHHHHHHHHhhcCHHHHHHHHhc--CcH
Q 016465 284 ---GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR----TGSPRNRENAAAVLWAICTGDAEQLKIAREL--DAE 354 (389)
Q Consensus 284 ---~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~~ 354 (389)
+++...+.+|..|+. +.....++.++.+|+ +....+|+.++-+|+.++.+.- +-+... .++
T Consensus 367 ~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLi 436 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELI 436 (885)
T ss_pred ccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHH
Confidence 112222222222221 112235555555554 4567889999999999998642 212221 368
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 355 EALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 355 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+.|++++.+..+-+|..+.|.|...+.+
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 8899999999999999999999887655
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6e-08 Score=91.20 Aligned_cols=277 Identities=17% Similarity=0.220 Sum_probs=210.0
Q ss_pred chhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhcccccc
Q 016465 102 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~ 178 (389)
..+.|+.|+..+.+. =.+.|..|++.|..+++ .+|..+.. .+++.|+..|+.+ |+++...++.++.++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 456899999888765 47889999999999997 45555544 4689999999875 89999999999999876442
Q ss_pred -------cc----------chhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHHH-hhCcHHHHHHHh
Q 016465 179 -------NK----------GTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIG-AAGAIPALIRLL 237 (389)
Q Consensus 179 -------~~----------~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~~~-~~~~i~~L~~ll 237 (389)
.+ +.+. ..+.|..|+..+...+-.+|..++..|.++-...+ .+..+. ..-+|..++.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 11 1222 46788999999999999999999999999876643 444443 458999999999
Q ss_pred ccCChhhHHHHHHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhc----CcccHHHHHHHHHHHhc-ChhhHHHhhccCC
Q 016465 238 CDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDA----GGGMVDEALAILAILAS-HQEGKTAIGQAEP 311 (389)
Q Consensus 238 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~ 311 (389)
.+..+.+|..++..|..|+.+.....+++. .++...|+.++... ..-|.+.++..|.||.. +..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 999899999999999999998887766664 78999999999862 23578899999999985 5677888888899
Q ss_pred hHHHHHHHhc---CChHH------H----HHHHHHHHHHhhcC------HHHHHHHHhcCcHHHHHHHHHhC--ChHHHH
Q 016465 312 IPVLMEVIRT---GSPRN------R----ENAAAVLWAICTGD------AEQLKIARELDAEEALKELSESG--TDRAKR 370 (389)
Q Consensus 312 v~~L~~ll~~---~~~~~------~----~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~ 370 (389)
++.|.++|.. ++.++ | ..++.++..+..-+ ..+...+.+.+++..|+.++.++ ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988864 22111 1 33455555555422 23446788899999999988776 356676
Q ss_pred HHHHHHHHHHhh
Q 016465 371 KAGSILELLQRI 382 (389)
Q Consensus 371 ~a~~~L~~l~~~ 382 (389)
.+.-.+..+.+.
T Consensus 336 esiitvAevVRg 347 (970)
T KOG0946|consen 336 ESIITVAEVVRG 347 (970)
T ss_pred HHHHHHHHHHHh
Confidence 666666666544
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-08 Score=87.74 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccchhcccCChHHHH
Q 016465 115 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIV 193 (389)
Q Consensus 115 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~l~~L~ 193 (389)
+.+.+.++.|+..|..++. +-++...+...|++..++..+++.+..+|+.|+++|+..+.+. ..+..+.+.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4578899999999999996 6678888999999999999999999999999999999988754 6788888999999999
Q ss_pred HHHccC-CHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhcc--CChhhHHHHHHHHHHhccCCCchHHHH-hc
Q 016465 194 DVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNKARAV-RA 268 (389)
Q Consensus 194 ~lL~~~-~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~ 268 (389)
..|.+. +..++..|+.+++.|..+. +....+...++...|.+.+.+ .+...+..++..+..|.........+. ..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 4567799999999998765 577777778889999999988 567888899999999887555443344 45
Q ss_pred CCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016465 269 GIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 269 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
+....+..+...-+.++.+.++..+..+.....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 666667777777788899998887777665433
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-08 Score=88.38 Aligned_cols=181 Identities=19% Similarity=0.188 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHH
Q 016465 199 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRF 277 (389)
Q Consensus 199 ~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~l 277 (389)
.+.+-+..|..-|..+..+-++...+...|++..++..+++.+..+|+.|+++|+..+++++ .+..+.+.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35777888899999998888888899999999999999999999999999999999998665 56778899999999999
Q ss_pred Hhhc-CcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCc
Q 016465 278 LKDA-GGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDA 353 (389)
Q Consensus 278 l~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 353 (389)
+.+. +..++..|+.++..+-. ++.+...+...++...|...+++ .+...+..++..+..|..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9874 45567899999999885 56778888888899999999999 46788899999999999887666667777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 354 EEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 354 ~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
...+..+....+.++++.+...+-.+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHH
Confidence 77788888888888888777554433
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.11 E-value=3.2e-11 Score=71.24 Aligned_cols=36 Identities=31% Similarity=0.814 Sum_probs=23.2
Q ss_pred CcCCcccCcC----CeecCCccCccHHHHHHHHhcC---CCCCC
Q 016465 14 CPISLELMKD----PVIVSTGQTYERSCIQKWLDAG---HKTCP 50 (389)
Q Consensus 14 Cpic~~~~~~----pv~~~c~h~~c~~ci~~~~~~~---~~~cp 50 (389)
||||.+ +.+ |+.|+|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999853 45677
No 49
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.09 E-value=6.2e-09 Score=92.29 Aligned_cols=270 Identities=16% Similarity=0.129 Sum_probs=196.3
Q ss_pred ccchhHHHHHHHhhcCCCHH--HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcccc
Q 016465 100 DCDRAAIDALLGKLANGNVE--EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIN 176 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~ 176 (389)
+...|.+..|++++.+++.+ ++.+|.+.|..+.. .++++.+...| ...++.+-+. +.++..+..+.+|.++..+
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 34567899999999998865 58999999998874 57888888877 4555554443 4678889999999999886
Q ss_pred c-cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH
Q 016465 177 D-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 253 (389)
Q Consensus 177 ~-~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 253 (389)
. +....+++.|+++.++-..+..++.+...++-+|.|++... ..+..|++..+-+.|..+-.+.|+-.+..|+.++.
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 5 67888899999999999999889999999999999998763 57788888888899998888888889999999999
Q ss_pred HhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHH
Q 016465 254 NLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 333 (389)
Q Consensus 254 ~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~ 333 (389)
.|+.+.+....+.+.|.+..+-.++.+-++.. ++.+...-.+=.-.+-+..|+.+|++.--+.+..++.-
T Consensus 333 vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 333 VLATNKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFY 402 (832)
T ss_pred hhhhhhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHH
Confidence 99988776666666666554444444433321 11111100010112467889999987655555444433
Q ss_pred HHHHhhc-C-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 334 LWAICTG-D-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 334 L~~l~~~-~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+..=+.- . ......+.+-|.++.|.++..+.+......|.++|..|.+.
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 3322211 1 12345566779999999999988888888899999888653
No 50
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.06 E-value=1.1e-10 Score=69.82 Aligned_cols=39 Identities=44% Similarity=1.113 Sum_probs=36.0
Q ss_pred CcCCcccCcCCe-ecCCccCccHHHHHHHHh-cCCCCCCCC
Q 016465 14 CPISLELMKDPV-IVSTGQTYERSCIQKWLD-AGHKTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~pv-~~~c~h~~c~~ci~~~~~-~~~~~cp~c 52 (389)
||||.+.+.+|+ +++|||+||+.|+.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 799999999999999999 566789987
No 51
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.3e-10 Score=96.34 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=47.1
Q ss_pred CCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016465 7 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
-.+..++|.+|++..++|-.+||||.||..||.+|+.+ ...||.||..+++.++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 34566999999999999999999999999999999986 4459999999876654
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.04 E-value=7.5e-11 Score=74.24 Aligned_cols=60 Identities=25% Similarity=0.528 Sum_probs=33.7
Q ss_pred CCCCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHH
Q 016465 9 PDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLI 71 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i 71 (389)
+..+.|++|.++|++||. ..|.|.||..||.+.+. ..||+|..|....++..|..++.+|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 456889999999999996 57999999999987554 3499999999888888898888765
No 53
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.03 E-value=2.2e-08 Score=96.74 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=185.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhc-cccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL-SINDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l-~~~~~~~~~ 182 (389)
..++.+.+.+.++++.+|..|+.++..+...+++.- ... .++.+.++|.+.++.++..|+.++..+ ..++... .
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h
Confidence 466778888899999999999999999998765532 222 589999999889999999999999999 2221112 1
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 262 (389)
+. ...+..|.+++...++-.+..++.++..++........- ...++.+..++.+.+..+...++.++..+.....
T Consensus 189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 11 234566666677889999999999999887655433211 4577888888888888999999999998876544
Q ss_pred HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhhcC
Q 016465 263 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 341 (389)
.-..+++.|..++.+++++++..++..|..++... ...+. .....+..+. +.+..++..++.+|..++..
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~- 334 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE- 334 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H-
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc-
Confidence 44557788999999888889999999999998654 22222 2233344555 67889999999999998863
Q ss_pred HHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhhH
Q 016465 342 AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 383 (389)
..... +++.|...+.+ ++++++..+...+..++...
T Consensus 335 -~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 335 -SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred -cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 33332 56777777744 47788888888888876543
No 54
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.01 E-value=1.1e-10 Score=98.07 Aligned_cols=66 Identities=27% Similarity=0.495 Sum_probs=58.9
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHH
Q 016465 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~ 76 (389)
+.+.|-||+++|.-|+++||+||||.-||..++.. ...||.|..+++...+..|..+..+++.+..
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 44789999999999999999999999999999985 5679999999998889999999888888643
No 55
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.98 E-value=7.8e-08 Score=88.89 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=98.5
Q ss_pred hcCCcHHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHH
Q 016465 267 RAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 345 (389)
Q Consensus 267 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 345 (389)
+..++.+|++++.+++..+...++++|.|+. .....+..++..|+++.+..++.+.++.++..+.|+|.++..+..+..
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 4567899999999999999999999999998 567789999999999999999999999999999999999999875444
Q ss_pred H-HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 346 K-IARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 346 ~-~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
+ .....=....+..+.++++..+++.+..+|+++.
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 3 3334345567778889999999999999999994
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.7e-07 Score=86.05 Aligned_cols=278 Identities=16% Similarity=0.150 Sum_probs=205.6
Q ss_pred chhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhCh----------------hhhHHHHh-cCCHHHHHHHhcCCChHH
Q 016465 102 DRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNA----------------DNRVCIAE-AGAIPLLVELLSSTDPRT 162 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~~-~g~v~~L~~lL~~~~~~~ 162 (389)
...+++.++..|..+ |++....++.++..+..+++ ...+.+++ .+.|..|+..+...|..+
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V 138 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV 138 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence 345688899999854 78999999999999876542 11233443 489999999999999999
Q ss_pred HHHHHHHHHhccccc--cccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh-hCcHHHHHHHhc
Q 016465 163 QEHAVTALLNLSIND--SNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLC 238 (389)
Q Consensus 163 ~~~a~~~L~~l~~~~--~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~-~~~i~~L~~ll~ 238 (389)
|..++..|.++.... +.++.+. .+-+|..++.+|.+..+.+|..++-.|..|+.+.....+++. .+++..|+.++.
T Consensus 139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999976544 5666665 578899999999999999999999999999988776666655 589999999997
Q ss_pred cC---C-hhhHHHHHHHHHHhccCC-CchHHHHhcCCcHHHHHHHhh---cCccc----------HHHHHHHHHHHhcC-
Q 016465 239 DG---T-PRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKD---AGGGM----------VDEALAILAILASH- 299 (389)
Q Consensus 239 ~~---~-~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~i~~L~~ll~~---~~~~~----------~~~a~~~L~~l~~~- 299 (389)
.. + .-+.+.++..|-||..++ .|+..|.+.+.||.|.++|.. .+.++ ...++.++..+..-
T Consensus 219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~ 298 (970)
T KOG0946|consen 219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPG 298 (970)
T ss_pred hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCC
Confidence 54 2 357888999999998755 477778888999999988864 33222 12455666665531
Q ss_pred ------hhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhcCHHHHHHHHhcC----------cHHHHHHHH
Q 016465 300 ------QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELD----------AEEALKELS 361 (389)
Q Consensus 300 ------~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----------~~~~L~~ll 361 (389)
..++..+...+.+..|..++-+. ..+++..+.-++++...++...+..+.+.. ++-.++.+.
T Consensus 299 Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ 378 (970)
T KOG0946|consen 299 NTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMF 378 (970)
T ss_pred CcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHH
Confidence 12345667788899999888765 478889999999999999877777776532 122222333
Q ss_pred HhC-ChHHHHHHHHHHHHH
Q 016465 362 ESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 362 ~~~-~~~~~~~a~~~L~~l 379 (389)
... ....|-....+++..
T Consensus 379 ne~q~~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 379 NEKQPFSLRCAVLYCFRSY 397 (970)
T ss_pred hccCCchHHHHHHHHHHHH
Confidence 333 456777777777665
No 57
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.97 E-value=3.8e-10 Score=70.48 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=40.3
Q ss_pred CCCcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 10 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
++..|+||++...++++.+|||. ||..|+.+|+. ....||.|+.++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 35789999999999999999999 99999999998 4678999998864
No 58
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.97 E-value=1.6e-07 Score=86.95 Aligned_cols=281 Identities=13% Similarity=0.043 Sum_probs=201.3
Q ss_pred ccchhHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCC-hHHHHHHHHHHHhcccc
Q 016465 100 DCDRAAIDALLGKLANGN--VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-PRTQEHAVTALLNLSIN 176 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~-~~~~~~a~~~L~~l~~~ 176 (389)
..+.|+++.+..++...+ .+........+..+..+.......+.+.+.++.|+++|.+.+ ..+++..++.+.++...
T Consensus 47 ~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet 126 (678)
T KOG1293|consen 47 NIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFET 126 (678)
T ss_pred hhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhc
Confidence 456788999999888654 566667777888888888888899999999999999999988 78899999999998765
Q ss_pred ccccch---hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH
Q 016465 177 DSNKGT---IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 253 (389)
Q Consensus 177 ~~~~~~---i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 253 (389)
.+.... .....++..+..++..+.......-+....+++...+.+..+.+.|+.+.+.-++...+...|..|+..+.
T Consensus 127 ~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~s 206 (678)
T KOG1293|consen 127 SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLS 206 (678)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhh
Confidence 444332 33455666666666535555556666777788888888888888898888888887777888888888888
Q ss_pred ---HhccCCCch-HH----HHhcCCcH--HHHHHHhhcCcccHHHHHHHHHHHh--------------------------
Q 016465 254 ---NLSIYQGNK-AR----AVRAGIVP--PLMRFLKDAGGGMVDEALAILAILA-------------------------- 297 (389)
Q Consensus 254 ---~L~~~~~~~-~~----~~~~~~i~--~L~~ll~~~~~~~~~~a~~~L~~l~-------------------------- 297 (389)
++..+++.. .. +.+.|+.+ .+.+++.+++...+..++.++..+.
T Consensus 207 r~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~ 286 (678)
T KOG1293|consen 207 RGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY 286 (678)
T ss_pred ccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH
Confidence 665554422 22 22334443 2333333332222211111111111
Q ss_pred --------------------------------------------------------------------------------
Q 016465 298 -------------------------------------------------------------------------------- 297 (389)
Q Consensus 298 -------------------------------------------------------------------------------- 297 (389)
T Consensus 287 ~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~ 366 (678)
T KOG1293|consen 287 NCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE 366 (678)
T ss_pred hhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence
Q ss_pred ---------------------------------------cCh-hhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 016465 298 ---------------------------------------SHQ-EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 337 (389)
Q Consensus 298 ---------------------------------------~~~-~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l 337 (389)
..- .-+..+...++..+|++++..++..++..+.++|.|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 000 0011222346788999999888899999999999999
Q ss_pred hhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 338 CTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
...-...+..+.+.|+++.|.+.+.+.++.+|..+.|+|+++.
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9877778899999999999999999999999999999999984
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.9e-07 Score=77.72 Aligned_cols=269 Identities=19% Similarity=0.231 Sum_probs=188.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHh-cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
...+++++.+.++.++..|+..+..++.. ..+..... ...++.+.+++...++ .+.|+.+|.|++.++..++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45689999999999999999999999864 22322222 2478889999987666 6789999999999999988888
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh------CcHHHHHHHhccCCh---hhHHHHHHHHHHh
Q 016465 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA------GAIPALIRLLCDGTP---RGKKDAATAIFNL 255 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~------~~i~~L~~ll~~~~~---~~~~~a~~~L~~L 255 (389)
.. .+..++..+.++........+.+|.||+..++....+... .++..++..+.+.+. .-....+-++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 76 8888889998887677788899999999887755443221 334444444333221 2344567788999
Q ss_pred ccCCCchHHHHhcCCcH--HHHHHHhhcCcccHH-HHHHHHHHHhcChhhHHHhhccC--ChHHH---------------
Q 016465 256 SIYQGNKARAVRAGIVP--PLMRFLKDAGGGMVD-EALAILAILASHQEGKTAIGQAE--PIPVL--------------- 315 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~i~--~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~i~~~~--~v~~L--------------- 315 (389)
++...+|..+.....++ .+..+ .+.+..++. ..+++|.|.|........+.+.+ .++.|
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 99988888888766432 22222 223444443 56789999988766665554421 12211
Q ss_pred ------HHHHhc-----CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHh
Q 016465 316 ------MEVIRT-----GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 381 (389)
Q Consensus 316 ------~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 381 (389)
++++.. .++.++..-+.+|..||.. ...++.+.+.|+-+.|-++-... ++++++....+...+.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 144431 3578899999999998875 35677888888887777766554 78899888888888765
No 60
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=6.9e-10 Score=92.04 Aligned_cols=49 Identities=22% Similarity=0.579 Sum_probs=40.7
Q ss_pred CCCCCcCcCCcccCcCC--------eecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 8 IPDDFRCPISLELMKDP--------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~p--------v~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..++..||||++.+.++ +..+|||+||+.||.+|+.. ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 35578999999987663 45689999999999999985 568999998764
No 61
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.92 E-value=4.2e-10 Score=68.24 Aligned_cols=40 Identities=38% Similarity=0.927 Sum_probs=33.3
Q ss_pred cCcCCcccCc---CCeecCCccCccHHHHHHHHhcCCCCCCCCC
Q 016465 13 RCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQ 53 (389)
Q Consensus 13 ~Cpic~~~~~---~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~ 53 (389)
.||||++.+. .++.++|||.|+..||.+|+.. ..+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 6999999884 3456899999999999999987 46899996
No 62
>PTZ00429 beta-adaptin; Provisional
Probab=98.91 E-value=4.7e-07 Score=88.61 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=180.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
...+.+++.+.+.|.+.+.-..-.+.+.+...++.. + -++..|.+-+.+.++.+|..|+++|.++-.. .+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence 356777888888888888888888888876554422 1 1568888888899999999999999886431 22
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016465 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
.+ -.++.+.+.|.+.++.+|..|+.++.++-..++ ..+...+.++.|.++|.+.++.+..+|+.+|..+.......-
T Consensus 138 ~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 22 246677888889999999999999999865443 233456888999999999999999999999999986544332
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc-CH
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG-DA 342 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 342 (389)
-...+.+..|+..+.+.++..+...+.+|.... +...... ...+..+...+++.++.+...|+.++.++... ++
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 223445667777777777777887777775432 2221111 24677788888888999999999999988764 23
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 343 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 343 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+....+.. .+...|+.+ .++++++|-.+...|..+..
T Consensus 290 ~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 290 ELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 32222211 122444544 45567777777766655543
No 63
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=83.98 Aligned_cols=52 Identities=25% Similarity=0.694 Sum_probs=42.6
Q ss_pred CCCCcCcCCcccCcC--CeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016465 9 PDDFRCPISLELMKD--PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~--pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
..-|.||||++-+.+ ||.+.|||.||+.||...++. ...||+|+..++...+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhh
Confidence 344899999998865 667899999999999999986 4569999987765443
No 64
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.4e-08 Score=90.61 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=171.8
Q ss_pred chhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccc
Q 016465 102 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
-...+|.|+++|++. +.+++..|+++|.+|+.--++....+++.++||.|+.-|.. .-.++.++++.+|..|+.. .
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--H 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--c
Confidence 356899999999865 69999999999999999999999999999999999986644 6778999999999998753 2
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
-..+...|++-..+..|+--+..+++.|+.+..|+|..-..-..-.-..++|.|..+|...+.+..+.++.++..++..-
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 35667889999999999888889999999999999865211111112468899999999999999999999998887532
Q ss_pred ----CchHHHHhcCCcHHHHHHHhhc----CcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhc
Q 016465 260 ----GNKARAVRAGIVPPLMRFLKDA----GGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT 321 (389)
Q Consensus 260 ----~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~ 321 (389)
+-..++...|.|....+++.-. +..+....+..|..++.. +.....+.+.+....|..+|..
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 2336677889999999998653 334556677788888765 6666666777777777777754
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.86 E-value=9.8e-07 Score=80.31 Aligned_cols=236 Identities=14% Similarity=0.096 Sum_probs=173.7
Q ss_pred CCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccch-hcc-----cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 016465 146 GAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGT-IVN-----AGAIPDIVDVLKNGSMEARENAAATLFSLSVID 218 (389)
Q Consensus 146 g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~-i~~-----~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 218 (389)
..+..++.++.. .+.++.+..+..+..+..+.+.+.. +.+ .....+++.+|..++.-+...++.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467788888876 4677888888888887766554433 222 356778889999888889999999999886543
Q ss_pred hhh-HHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhc--CcccHHHHHHHHH
Q 016465 219 ENK-VAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA--GGGMVDEALAILA 294 (389)
Q Consensus 219 ~~~-~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~ 294 (389)
... ......-.++.+...+++. +...+..++.+|..|...++.|..+.+.++++.|+++|... ...++..++.+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 211 1101111334555566543 46677788899999999999999999999999999999863 4477889999999
Q ss_pred HHhcChhhHHHhhccCChHHHHHHHhcCC-hHHHHHHHHHHHHHhhcC------HHHHHHHHhcCcHHHHHHHHHhC--C
Q 016465 295 ILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGD------AEQLKIARELDAEEALKELSESG--T 365 (389)
Q Consensus 295 ~l~~~~~~~~~i~~~~~v~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~ll~~~--~ 365 (389)
-|+..++....+...+.++.|+++++... +.+.+-++.+|.|+...+ ......++..|+++.+..+...+ |
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D 292 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD 292 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc
Confidence 99999887777777899999999998764 778889999999998743 23556777888777666666554 7
Q ss_pred hHHHHHHHHHHHHHHh
Q 016465 366 DRAKRKAGSILELLQR 381 (389)
Q Consensus 366 ~~~~~~a~~~L~~l~~ 381 (389)
+++.+-...+-..|.+
T Consensus 293 edL~edl~~L~e~L~~ 308 (429)
T cd00256 293 EDLTDDLKFLTEELKN 308 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666555555543
No 66
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=6.7e-07 Score=88.01 Aligned_cols=275 Identities=17% Similarity=0.135 Sum_probs=165.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHH----HHhcCCChHHHHHHHHHHHhcccccc-
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLV----ELLSSTDPRTQEHAVTALLNLSINDS- 178 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~----~lL~~~~~~~~~~a~~~L~~l~~~~~- 178 (389)
..+.+.+.+..++..++..|++++..++...+.++.....- ..+|.++ ..+..++.+....++.+|..++...+
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 34444455555555599999999999886554333222221 2444444 44455666666777777777655332
Q ss_pred c-cchhcccCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhhH---------------------------------
Q 016465 179 N-KGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKV--------------------------------- 222 (389)
Q Consensus 179 ~-~~~i~~~g~l~~L~~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~--------------------------------- 222 (389)
. +..+. .+++..+.+.++. ++.+|..|+.+|..++...+...
T Consensus 240 ~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 240 LLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred HHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 1 11111 1333333444332 34455555555544332211000
Q ss_pred -------------HHHh------------hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHH
Q 016465 223 -------------AIGA------------AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRF 277 (389)
Q Consensus 223 -------------~~~~------------~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~l 277 (389)
+..+ .-.++.+-.++.+.+..-|..++.+|..++..-.....-.-..+++.++..
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 0000 012344445556777788888888888776533222111224678888889
Q ss_pred HhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcH
Q 016465 278 LKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDA-EQLKIARELDAE 354 (389)
Q Consensus 278 l~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~ 354 (389)
|.++++.|+..|+.+++.++.+ .+.-+.-..+-..+.|+..+.+. +++++..|+.+|.|+....+ +.....+. +++
T Consensus 398 l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm 476 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLM 476 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHH
Confidence 9999999999999999999965 33333333344677888888775 68999999999999988653 23332222 456
Q ss_pred H-HHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 355 E-ALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 355 ~-~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
. .+..+.+++.+.+++.+..+|...+.-
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 6 555566777899999999999988654
No 67
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=3e-09 Score=65.21 Aligned_cols=43 Identities=44% Similarity=1.034 Sum_probs=37.8
Q ss_pred cCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCcc
Q 016465 13 RCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 13 ~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
.|++|.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 5999999998888765 999999999999998766789999864
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.84 E-value=8.1e-08 Score=70.83 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=114.0
Q ss_pred ccchhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016465 100 DCDRAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
+...+.++.|+.-.. ..+.+.+++....|.+++. ++.+...+.+..++..++..|...+..+.+.++..|+|++.++.
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence 345678888887766 4588999999999999998 78899999999999999999999999999999999999999999
Q ss_pred ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHH
Q 016465 179 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPAL 233 (389)
Q Consensus 179 ~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L 233 (389)
+.+.|.+.++++.++..++++...+...|+.++..|+... ..+..+....++..+
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 9999999999999999999999999999999999998664 345555444443333
No 69
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.83 E-value=2.2e-09 Score=88.51 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=51.9
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
-+.|-||.+.++-|+.++||||||.-||..++.. ...||+|+.+....-+..+...+..++.+
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~ 87 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESH 87 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhh
Confidence 3679999999999999999999999999999986 45699999887766666666665555554
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.1e-07 Score=90.09 Aligned_cols=240 Identities=18% Similarity=0.127 Sum_probs=186.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHh-ccccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~ 182 (389)
+.+|..++.|-|+ --+..|+..|..+..-.+.........|++|..+++|++...++|..-+-+-.. |+.++..+..
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 3577777777654 457889999999988788888888899999999999999988888766655555 5667777788
Q ss_pred hcccCChHHHHHHHcc-C--CHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhcc
Q 016465 183 IVNAGAIPDIVDVLKN-G--SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSI 257 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~-~--~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~ 257 (389)
+++.++-.-++..|.. + +++-+..|+.+|..+..+. -.+....+.+.+...+..++++ .+-.+...+-+|+.|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8877776777777766 2 4688889999999988764 4667777788999999999885 57789999999999987
Q ss_pred CC-CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-----hhhHHHh-----------hccCCh----HHHH
Q 016465 258 YQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-----QEGKTAI-----------GQAEPI----PVLM 316 (389)
Q Consensus 258 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~i-----------~~~~~v----~~L~ 316 (389)
+- +.+..-.+.++.+.|..+|.++-++|+..|+.+|+.+.++ ++....+ .-++.+ -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 54 4566666788999999999999999999999999998864 2221111 112222 3677
Q ss_pred HHHhcCChHHHHHHHHHHHHHhhcCHHHH
Q 016465 317 EVIRTGSPRNRENAAAVLWAICTGDAEQL 345 (389)
Q Consensus 317 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 345 (389)
.+++.+++-++.+.+.+|..+..+.....
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 78888899999888889988887664433
No 71
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.3e-07 Score=88.67 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=178.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-hHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc-cc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-NK 180 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~ 180 (389)
.+.++.|++..+|+++..|+.|+..|..+...-... ...+. .+.+.|.+.+.+++..+|..|++++..++..-+ ++
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 356777777778999999999999999987522111 10110 234555566666655599999999998776432 22
Q ss_pred chhcc-cCChHHHHHH----HccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC--ChhhHHHHHHHHH
Q 016465 181 GTIVN-AGAIPDIVDV----LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRGKKDAATAIF 253 (389)
Q Consensus 181 ~~i~~-~g~l~~L~~l----L~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~ 253 (389)
...-. ...+|.++.. +..++.+....+..+|..|....+..-.-.-..+|...+...++. +..+|..|+..|.
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 22211 2245555544 456777777788888888876643211111124455555555554 6789999999999
Q ss_pred HhccCCCchHHH---HhcCCcHHHHHHHhhcCc----------------ccHHHHHHHHHHHhcChhhHHHhhccCChHH
Q 016465 254 NLSIYQGNKARA---VRAGIVPPLMRFLKDAGG----------------GMVDEALAILAILASHQEGKTAIGQAEPIPV 314 (389)
Q Consensus 254 ~L~~~~~~~~~~---~~~~~i~~L~~ll~~~~~----------------~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~ 314 (389)
.++.......+. .-...++.++.++..... .-...|..+|-.++.+-.++..+- -.++.
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~~~~~ 352 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--PLFEA 352 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--HHHHH
Confidence 998763322111 223445666666544111 134457777777776544333221 14566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 315 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 315 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+-.++++.+..-|.+|+.+|+.++.+..+.....+. .+++.++..+++++++||..|..++..++.
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 667778889999999999999999988766655333 478888899999999999999999999864
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.80 E-value=4.2e-08 Score=72.29 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=133.7
Q ss_pred CcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHh
Q 016465 228 GAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 228 ~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i 306 (389)
+.+..|+.-.. ..+.+.++....-|.|++.++-|...+.+.++++.+++.|...++.+++.+++.|+|+|-.+.+...|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34455554443 35788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 307 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
.+.++++.++..+.+....+-..|+.++..|+..+...+..+...-++..+.+.-.+.+.+.+..|..+|....
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 99999999999999999888899999999999988888888888888888888887777788888888776543
No 73
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-06 Score=74.86 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=194.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh----hHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN----RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
..++.|-.-|..+|..++.-+++.+..+..+.+.+ ...+++.|+.+.++..+..++.++...|...|..++..+..
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 45666777777888889999999999998877644 22345789999999999999999999999999999988888
Q ss_pred cchhcccCChHHH--HHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHh
Q 016465 180 KGTIVNAGAIPDI--VDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNL 255 (389)
Q Consensus 180 ~~~i~~~g~l~~L--~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L 255 (389)
-..++++..++.+ ..+--.-+.-++......+..++.. +........+|.+..|..-++. .|.-++.+++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8888877766654 3333344556777778877777654 4555666677999888888875 5777888999999999
Q ss_pred ccCCCchHHHHhcCCcHHHHHHHhhc--CcccHHHHHHHH----HHHhcChhhHHHhhc--cCChHHHHHHHhcCChHHH
Q 016465 256 SIYQGNKARAVRAGIVPPLMRFLKDA--GGGMVDEALAIL----AILASHQEGKTAIGQ--AEPIPVLMEVIRTGSPRNR 327 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L----~~l~~~~~~~~~i~~--~~~v~~L~~ll~~~~~~~~ 327 (389)
+....+++.+.+.|.|+.+..++... ++--+-.++-.. ++.+...-.-+++.+ --++...++++...+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 99999999999999999999998763 333333344333 333332222223322 1256667778888999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHhcCc--HHHHHHHHHh-CChHHHHHHHHHHHHHH
Q 016465 328 ENAAAVLWAICTGDAEQLKIARELDA--EEALKELSES-GTDRAKRKAGSILELLQ 380 (389)
Q Consensus 328 ~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~~ll~~-~~~~~~~~a~~~L~~l~ 380 (389)
+.|+.+++.+..+. +..+.+.+.|- ...|+.-.-+ +...-+..+..+|.+++
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 99999999987754 44555555553 2333322222 22334455566666664
No 74
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.78 E-value=3e-09 Score=67.39 Aligned_cols=44 Identities=34% Similarity=0.787 Sum_probs=31.1
Q ss_pred CCCcCcCCcccCcCCee-cCCccCccHHHHHHHHh-cCCCCCCCCC
Q 016465 10 DDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLD-AGHKTCPKTQ 53 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~-~~~~~cp~c~ 53 (389)
-.++||++++.|.+||. ..|||+|++..|.+|+. .+...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 45899999999999997 58999999999999994 3446799943
No 75
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=9.4e-09 Score=60.74 Aligned_cols=39 Identities=56% Similarity=1.207 Sum_probs=35.5
Q ss_pred CcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCC
Q 016465 14 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c 52 (389)
|++|++...+++.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556679986
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.72 E-value=1.5e-05 Score=72.20 Aligned_cols=273 Identities=17% Similarity=0.165 Sum_probs=193.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccccccch
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
..+.+..++-+++.+++..+.+.++.+.. +.+....+.+.++--.++..|..+ +..-|++|+..+..+.......+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 45555555556668999999999999886 567777888888777777777664 456788999999887654333322
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 262 (389)
...|++..++.+..+.++..+..|..+|..++..++ ..+...|++..|++.+.++..++.+..+.++..+...+..|
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 356889999999999999999999999999986543 34456899999999998877678888899999999888888
Q ss_pred HHHHhcCCcHHHHHHHhhc-------Cc--ccHHHHHHHHHHHhcChhhHHHhhcc--CChHHHHHHHhcCChHHHHHHH
Q 016465 263 ARAVRAGIVPPLMRFLKDA-------GG--GMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~i~~~--~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
..+...--+..++.-+.+. +. +....+..++..+-.+=.|--.+... .+++.|+..|..+++++|...+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 7666544455555555443 11 12334445555444333333222222 4677788888777777777777
Q ss_pred HHHHHHhhcC----------------H------------------------------------HHHHHHHhcCcHHHHHH
Q 016465 332 AVLWAICTGD----------------A------------------------------------EQLKIARELDAEEALKE 359 (389)
Q Consensus 332 ~~L~~l~~~~----------------~------------------------------------~~~~~~~~~~~~~~L~~ 359 (389)
.++..+-.-. + -....+.+.|+++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 6666654300 0 01134557899999999
Q ss_pred HHHhC-ChHHHHHHHHHHHHHHh
Q 016465 360 LSESG-TDRAKRKAGSILELLQR 381 (389)
Q Consensus 360 ll~~~-~~~~~~~a~~~L~~l~~ 381 (389)
+..+. ++.+..+|.-+|..+-.
T Consensus 342 li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 99988 88999999998887643
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.71 E-value=2.5e-06 Score=78.01 Aligned_cols=221 Identities=19% Similarity=0.098 Sum_probs=142.7
Q ss_pred hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 103 RAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 103 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
...++.++..|. ..+.+++..++..+.... .+ .++..|++.|.+.++.++..++.+|+.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 346788888884 455666665554443221 11 1378888888888877888888888643
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
...+..+.|+.+|++.++.++..++.++.... ....+.+..+|++.++.++..|+.+|+.+-
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----- 175 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELP----- 175 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----
Confidence 34556778888888888888877776666521 234467777888888888888888887663
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHH------------------hhc----cCChHHHHHHH
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA------------------IGQ----AEPIPVLMEVI 319 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------------------i~~----~~~v~~L~~ll 319 (389)
....++.|...+.+.++.++..|+..+..+.. +..... +.. ...+..|..++
T Consensus 176 -----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 176 -----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred -----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 33456667777777888888888877766643 211111 010 12344455555
Q ss_pred hcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 320 RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 320 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+.. .++..++.+|..+... ..++.|+..+.+ +.+++.|.++++.|.-
T Consensus 250 ~d~--~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d--~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 250 QAA--ATRREALRAVGLVGDV-----------EAAPWCLEAMRE--PPWARLAGEAFSLITG 296 (410)
T ss_pred cCh--hhHHHHHHHHHHcCCc-----------chHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence 443 3666666666654432 367778877765 4499999999998864
No 78
>PHA02926 zinc finger-like protein; Provisional
Probab=98.70 E-value=1.3e-08 Score=81.34 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=39.7
Q ss_pred CCCCCcCcCCcccCcC---------CeecCCccCccHHHHHHHHhcC-----CCCCCCCCccCc
Q 016465 8 IPDDFRCPISLELMKD---------PVIVSTGQTYERSCIQKWLDAG-----HKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~---------pv~~~c~h~~c~~ci~~~~~~~-----~~~cp~c~~~~~ 57 (389)
.+.+..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4667899999987643 3456899999999999999742 346999998764
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.69 E-value=2.4e-08 Score=82.80 Aligned_cols=65 Identities=25% Similarity=0.475 Sum_probs=55.5
Q ss_pred CcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCcc-CcCCCCCccHHHHHHHHHHHH
Q 016465 12 FRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQT-LLHTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~-~~~~~~~~n~~~~~~i~~~~~ 76 (389)
+.||+|+.++++|+-+ +|||+||..||+..+....+.||.|... +-.+.+.++...+..++.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 8999999999999976 6999999999999998778999999653 445678888888877777655
No 80
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.5e-07 Score=83.45 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=172.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHh-cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
-.+|+++++.+++++.+|..|+.++..+.-..... .... ...++.+..+-.++++++|.+.+.+|.-|..-...+-.
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 46899999999999999999999998876433221 1111 13566777777778999999999999888654433333
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh--hCcHHHHHHHhccCC-------------------
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDGT------------------- 241 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~--~~~i~~L~~ll~~~~------------------- 241 (389)
-.-.++++-++..-++.++++...|+.....++..+-.+..+.. ...+|.|+.-+.-.+
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 22357788888888889999999999999999887744444332 256666655432110
Q ss_pred -------------------------------------hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh----h
Q 016465 242 -------------------------------------PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK----D 280 (389)
Q Consensus 242 -------------------------------------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~----~ 280 (389)
-.+|+..+.+|--|+ .+....+++.++.+|+ +
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSS 404 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCc
Confidence 012222222222221 1234455566665554 4
Q ss_pred cCcccHHHHHHHHHHHhcChhhHHHhhcc--CChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHH
Q 016465 281 AGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEAL 357 (389)
Q Consensus 281 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L 357 (389)
.+-.+++.++-+|+.++..- -+-+..+ ..++-|+.+|.+..+-+|.-.+|+|+..+..-. +....... .++.-|
T Consensus 405 ~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~l 481 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGL 481 (885)
T ss_pred chhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHH
Confidence 66678899999999888521 1111111 257888888999999999999999988765310 01111111 134444
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHh
Q 016465 358 KELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 358 ~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+.-+-+++.+|++.|..+...+-+
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHH
Confidence 455567899999999988877644
No 81
>PTZ00429 beta-adaptin; Provisional
Probab=98.67 E-value=9.3e-06 Score=79.69 Aligned_cols=255 Identities=17% Similarity=0.080 Sum_probs=176.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.|-+..+-+.|.+.+...+..+++.+......+.+. ..+++..++++.+.+.++++...-.+.+++...+....
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 345677888888888888888888655544322221 13567778888999999999988888887653322211
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 262 (389)
+ ++..+.+=+.++++.+|..|+++++.+-... .. .-.+..+.+.+.+.++.+|+.|+.++..+-...+
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-VL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-HH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence 1 3567777888899999999999999875321 11 2345677788889999999999999999865433
Q ss_pred HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016465 263 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
..+.+.+.++.|.++|.+.++.++.+|+.+|..+.......-. ...+.+..|+..+...++..+...+.+|....-.+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc
Confidence 2334567889999999999999999999999999865332222 223456677777776677777776666644321111
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 343 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 343 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
... ..++..+...+++.++.|.-.|.+++-.+..
T Consensus 252 ~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 252 ESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 111 2456666777777777777777777766653
No 82
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=3.8e-08 Score=84.13 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=45.3
Q ss_pred CCCcCcCCcc-cCcCCe----ecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCC----CCccHHHHHH
Q 016465 10 DDFRCPISLE-LMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA----LTPNYVLKSL 70 (389)
Q Consensus 10 ~~~~Cpic~~-~~~~pv----~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~----~~~n~~~~~~ 70 (389)
++..||+|+. .+..|- +.+|||.||+.|+...|..+...||.|+.++.... ..++..+.+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekE 71 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKE 71 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHH
Confidence 4578999997 344453 23799999999999998877778999999887655 3445444443
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.5e-09 Score=91.07 Aligned_cols=70 Identities=24% Similarity=0.439 Sum_probs=60.4
Q ss_pred CCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCccCc-CCCCCccHHHHHHHHHHHH
Q 016465 7 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~-~~~~~~n~~~~~~i~~~~~ 76 (389)
.+..++.||||+.+++..++.+ |+|.||+.||-..+..++..||.||+.+. ...+.+++....+|.++..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 3556789999999999998875 99999999999999999999999998865 5678888888888888643
No 84
>PF05536 Neurochondrin: Neurochondrin
Probab=98.64 E-value=5.1e-06 Score=79.14 Aligned_cols=236 Identities=20% Similarity=0.213 Sum_probs=167.6
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh---hHHHHhcCCHHHHHHHhcCC-------ChHHHHHHHHHHHh
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN---RVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLN 172 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~g~v~~L~~lL~~~-------~~~~~~~a~~~L~~ 172 (389)
...+...+++|++.+.+.+..++..+.++...++.. +..+.+.=+.+.+-++|..+ ....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999888999999999998766533 34566776789999999872 35677889999999
Q ss_pred ccccccccchhcccCChHHHHHHHccCCH-HHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHH
Q 016465 173 LSINDSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 251 (389)
Q Consensus 173 l~~~~~~~~~i~~~g~l~~L~~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 251 (389)
++.+++....----+-||.|++.+.+.+. ++...|..+|..++..++.+..+.+.|+++.|.+.+.+ .+...+.++.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99877654322223469999999988776 89999999999999999999999999999999999987 55678889999
Q ss_pred HHHhccCCCchHHHHh----cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh--HHHhhccC----ChHHHHHHHhc
Q 016465 252 IFNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQAE----PIPVLMEVIRT 321 (389)
Q Consensus 252 L~~L~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~----~v~~L~~ll~~ 321 (389)
|.+++........--. ..+++.+...+.......+-.++..|..+-...+. ........ ....|..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9998765442111111 13445555555556666677788888887755421 11112222 34455555655
Q ss_pred C-ChHHHHHHHHHHHHHhh
Q 016465 322 G-SPRNRENAAAVLWAICT 339 (389)
Q Consensus 322 ~-~~~~~~~a~~~L~~l~~ 339 (389)
. .+.-|..+..+...|..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4 45556666555555443
No 85
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=2.5e-08 Score=60.21 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=34.3
Q ss_pred cCcCCcccC---cCCeecCCccCccHHHHHHHHhcCCCCCCCCCc
Q 016465 13 RCPISLELM---KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 54 (389)
Q Consensus 13 ~Cpic~~~~---~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~ 54 (389)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 346678999999999999998 34678999974
No 86
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.8e-08 Score=90.79 Aligned_cols=70 Identities=27% Similarity=0.659 Sum_probs=58.5
Q ss_pred CCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhc
Q 016465 6 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 78 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~ 78 (389)
....+.+.||||.+.|.+|++++|||+||+.|+..++. ....||.|+. ... .+.+|..+.+++..+....
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 34678899999999999998899999999999999998 6678999996 333 6668888888887775543
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.59 E-value=6.8e-06 Score=72.62 Aligned_cols=230 Identities=17% Similarity=0.147 Sum_probs=167.0
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC--CChHHHHHHHHHHHhccccccccchhcc
Q 016465 109 LLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 109 l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
+...+++ .+.+...-|+++|..+.. -+++|..+....++..++..+.+ .+..++...+-+++-|+.++...+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh
Confidence 3344444 456778889999999997 57899999999999999999943 3778999999999999999887777777
Q ss_pred cCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCch-------hhHHHHhhCcHHHHHHHhccC---ChhhHHHHHHH---
Q 016465 186 AGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDE-------NKVAIGAAGAIPALIRLLCDG---TPRGKKDAATA--- 251 (389)
Q Consensus 186 ~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~-------~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~--- 251 (389)
.+.|+.|..++++. .+.+.+-++.++.|+....+ ...++.. +.++..++.|... |+++....-..
T Consensus 240 ~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 240 FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88999999999865 56788889999999987652 2233443 4445555555432 33333222111
Q ss_pred ----HHHhcc---------------CC---------CchHHHHhc--CCcHHHHHHHhhc-CcccHHHHHHHHHHHh-cC
Q 016465 252 ----IFNLSI---------------YQ---------GNKARAVRA--GIVPPLMRFLKDA-GGGMVDEALAILAILA-SH 299 (389)
Q Consensus 252 ----L~~L~~---------------~~---------~~~~~~~~~--~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~-~~ 299 (389)
...|++ ++ +|...+-+. .++..|+.+|..+ ++.+...|+.=++... .+
T Consensus 319 L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 319 LKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred HHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence 111111 11 123334443 4688999999874 4777777887777776 57
Q ss_pred hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016465 300 QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 300 ~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
|+++..+.+.|+=..+++++.+.+++++.+|+.++..|..+
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998876543
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.59 E-value=7.5e-06 Score=74.98 Aligned_cols=191 Identities=24% Similarity=0.216 Sum_probs=139.7
Q ss_pred CHHHHHHHhc-CCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016465 147 AIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 147 ~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
+++.++..|. .++.+++..++.++.... ....+..|+..|.+.++.++..++.+|..+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------
Confidence 5788899995 556777776666653221 1123899999999999999999999998652
Q ss_pred hhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHH
Q 016465 226 AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 305 (389)
Q Consensus 226 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 305 (389)
..+..+.|+.+|.+.++.++..++.++... .....+.+..+|.+.++.++..|+.+|+.+...
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 345678899999999999998888777652 223457899999999999999999999987653
Q ss_pred hhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHH------------------HHhc----CcHHHHHHHHHh
Q 016465 306 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKI------------------AREL----DAEEALKELSES 363 (389)
Q Consensus 306 i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~------------------~~~~----~~~~~L~~ll~~ 363 (389)
..++.|...+.+.++.+|..|+..+..+.. +..... +... ..+..|..++++
T Consensus 178 ----~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 178 ----LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA 251 (410)
T ss_pred ----cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC
Confidence 467778888999999999999998876643 111111 1111 345556666666
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 016465 364 GTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 364 ~~~~~~~~a~~~L~~l~~~ 382 (389)
+.+++.+.++|..+...
T Consensus 252 --~~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 252 --AATRREALRAVGLVGDV 268 (410)
T ss_pred --hhhHHHHHHHHHHcCCc
Confidence 34888888888877543
No 89
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.57 E-value=2.4e-06 Score=72.57 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=160.9
Q ss_pred HhcCCChHHHHHHHHHHHhccccccccchhc-ccCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHHHhh-Cc
Q 016465 154 LLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAA-GA 229 (389)
Q Consensus 154 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~l~~L~~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~-~~ 229 (389)
+++.=++-.+..|++++.++....+.|..+. +...-..+++++++ +..++++..+-++|.|+.++.....+-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333355578889999999999998888776 44456678888876 46789999999999999887766444332 67
Q ss_pred HHHHHHHhccC-ChhhHHHHHHHHHHhccCC-C-chHHHHhcCCcHHHHHHHhh---cCcccHHHHHHH---H----HHH
Q 016465 230 IPALIRLLCDG-TPRGKKDAATAIFNLSIYQ-G-NKARAVRAGIVPPLMRFLKD---AGGGMVDEALAI---L----AIL 296 (389)
Q Consensus 230 i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~-~-~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~---L----~~l 296 (389)
+..++.+++.. ..++.+-++..+.|++... . ....+.-.|-+.+-++.|.. ++++++...-.+ | ..+
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888764 4677788899999998733 2 33444555545555555543 444443221111 1 111
Q ss_pred hc---------------Ch---------hhHHHhhcc--CChHHHHHHHhcCChH-HHHHHHHHHHHHhhcCHHHHHHHH
Q 016465 297 AS---------------HQ---------EGKTAIGQA--EPIPVLMEVIRTGSPR-NRENAAAVLWAICTGDAEQLKIAR 349 (389)
Q Consensus 297 ~~---------------~~---------~~~~~i~~~--~~v~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~ 349 (389)
+. .| .+...+.+. ..++.|.++++...+. .-..|+.-+..+....|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 11 123344332 3688899999987665 456788888899998999999999
Q ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 350 ELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 350 ~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
..|+-..++++++++++++|-.|..+++.+-.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999988754
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=4e-05 Score=68.18 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=173.6
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-----h----hhHHHHhcCCHHHHHHHhcCCCh------HHHH
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----D----NRVCIAEAGAIPLLVELLSSTDP------RTQE 164 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-----~----~~~~~~~~g~v~~L~~lL~~~~~------~~~~ 164 (389)
..+..+++.++++|.+.+.++....+..|..++..+. + -.+.+++.++++.|++-++.-+. .-..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 3577889999999999999999999999999985431 2 24567777899999988865332 3346
Q ss_pred HHHHHHHhccc-cccccchhcccCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCch-hhHHHHhhCcHHHHHHHhc--
Q 016465 165 HAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDE-NKVAIGAAGAIPALIRLLC-- 238 (389)
Q Consensus 165 ~a~~~L~~l~~-~~~~~~~i~~~g~l~~L~~lL~~~--~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~~~i~~L~~ll~-- 238 (389)
.++..+-|+.. .+.....+++.|.+..|+.-+... -..-+.+|..+|.-+..+.+ ++.......++..+++-+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 67778888766 456777788888888888766433 23445678888888877754 6777777788888887763
Q ss_pred --cC-----ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh---HHHhhc
Q 016465 239 --DG-----TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG---KTAIGQ 308 (389)
Q Consensus 239 --~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~ 308 (389)
.+ ..+..++-..+|+.+...+.++..++...++....-+++. ....+..++++|-....++++ ...+++
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2455667778888888899999999998887766555554 555677899999888876654 556677
Q ss_pred cCChHHHHHHHh-cC--------C-hHHHHHHHHHHHHHhhc
Q 016465 309 AEPIPVLMEVIR-TG--------S-PRNRENAAAVLWAICTG 340 (389)
Q Consensus 309 ~~~v~~L~~ll~-~~--------~-~~~~~~a~~~L~~l~~~ 340 (389)
..++..++.+.- .+ + .+..+..+.+|+.+-.+
T Consensus 360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 778888877754 21 1 34456777777776553
No 91
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.8e-08 Score=80.81 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=45.3
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHH-HHhcCCCCCCCCCccCcCCC
Q 016465 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQK-WLDAGHKTCPKTQQTLLHTA 60 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~-~~~~~~~~cp~c~~~~~~~~ 60 (389)
..++.|++|.+.+.+|.-++|||.||..||.. |-.+....||.||.......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 46899999999999999999999999999999 87765567999998776543
No 92
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.55 E-value=2.7e-08 Score=84.41 Aligned_cols=64 Identities=20% Similarity=0.463 Sum_probs=51.5
Q ss_pred CCCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhcCCCCCCCCCccCcCC----CCCccHHHHHHH
Q 016465 7 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLI 71 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~----~~~~n~~~~~~i 71 (389)
.+-+..+|++|.++|.|+.++ .|-||||++||-+++.. ...||.|+..+..+ .+.++..++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHH
Confidence 456678999999999999985 59999999999999997 67899998776544 345566665554
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.54 E-value=1.6e-05 Score=72.03 Aligned_cols=187 Identities=30% Similarity=0.361 Sum_probs=142.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
..++.+++.+.+.++.++..|...+..+... -.++.+..++.+.++.+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 4688899999999999999999886666532 37899999999999999999999886653
Q ss_pred cccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCCh------------hhHHHHHH
Q 016465 184 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP------------RGKKDAAT 250 (389)
Q Consensus 184 ~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~~~~~a~~ 250 (389)
....++.++..+. +++..++..++++|..+-. ...+..++..+.+... .++..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3567899999998 5899999999999998743 2336777777776542 23333343
Q ss_pred HHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHH
Q 016465 251 AIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 330 (389)
Q Consensus 251 ~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a 330 (389)
+|..+ .+...++.+...+.+....++..|...|..+.... ......+...+...+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33332 34557888999999988899999999999888765 2355777777777888888877
Q ss_pred HHHHHHHhh
Q 016465 331 AAVLWAICT 339 (389)
Q Consensus 331 ~~~L~~l~~ 339 (389)
+..|..+-.
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 777766544
No 94
>PF05536 Neurochondrin: Neurochondrin
Probab=98.53 E-value=1.4e-05 Score=76.32 Aligned_cols=235 Identities=17% Similarity=0.175 Sum_probs=165.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhcccccc----ccchhcccCChHHHHHHHccC-------CHHHHHHHHHHHHHhc
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDS----NKGTIVNAGAIPDIVDVLKNG-------SMEARENAAATLFSLS 215 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~l~~L~~lL~~~-------~~~~~~~a~~~L~~Ls 215 (389)
.+...+++|+..+.+-|-.++..+.++....+ .++.+.+.=+.+-+-++|+++ ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45677888988887777788888888876443 234566655578888888762 3567788999999999
Q ss_pred CCchhhHHHHhhCcHHHHHHHhccCCh-hhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHH
Q 016465 216 VIDENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILA 294 (389)
Q Consensus 216 ~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 294 (389)
..++....-.-.+-||.|++.+.+.+. .+...++.+|..++..++++..+++.|+++.|.+.+.+ .+...+.|+.++.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 876544332224789999999987776 89999999999999999999999999999999999987 6677899999999
Q ss_pred HHhcChhhHHHhhcc----CChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHH-HHHHHh----cCcHHHHHHHHHhC-
Q 016465 295 ILASHQEGKTAIGQA----EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ-LKIARE----LDAEEALKELSESG- 364 (389)
Q Consensus 295 ~l~~~~~~~~~i~~~----~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~----~~~~~~L~~ll~~~- 364 (389)
+++........--.. ..+..+-..+.......+..++..|..+-...+.. ...... ..+..-|..++++.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 988654321111111 23444555555555666788888888876654211 111122 23444555666776
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 016465 365 TDRAKRKAGSILELLQRI 382 (389)
Q Consensus 365 ~~~~~~~a~~~L~~l~~~ 382 (389)
.+.-|..+..+...|.+.
T Consensus 245 ~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 245 TPSQRDPALNLAASLLDL 262 (543)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566777777777777554
No 95
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=9.1e-06 Score=74.23 Aligned_cols=272 Identities=16% Similarity=0.120 Sum_probs=186.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHH-hcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA-EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
.+.+|.|-+.+.-.++..+.--+.-|..+-. ....+.+. -...++.|..+|++++.++|..+=.+|.++...=.+..
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4566766676766777777777777766643 22222222 22577888899999999999776666655432111111
Q ss_pred hh-cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChh-hHHHHHH---HHHHhc
Q 016465 182 TI-VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR-GKKDAAT---AIFNLS 256 (389)
Q Consensus 182 ~i-~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~a~~---~L~~L~ 256 (389)
.. --...++.++.-+.++++.++..|+.-+..+....+..-...-.|++..++.++.+.+.. ++..+.. .|..+.
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 11 224567888999999999999999888888776666555556678888888888776553 4444332 233444
Q ss_pred cCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 016465 257 IYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 257 ~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
........ ++ ..++..+...+.+...+.+-.++..+..|-...+++-..........|+.-|.+.++.+-..++.++.
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLA 402 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 43333333 33 34678888888888889999999999988887777777777788999999999999999999999999
Q ss_pred HHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 336 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
++|...... . --.++..|+++...+..-+..++.-+++.|+-
T Consensus 403 ~i~~s~~~~-~---~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 403 SICSSSNSP-N---LRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHhcCcccc-c---HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 999865321 0 01244455555555556677778888877753
No 96
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.9e-05 Score=67.03 Aligned_cols=227 Identities=19% Similarity=0.150 Sum_probs=155.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhccccccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh
Q 016465 149 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 227 (389)
Q Consensus 149 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~ 227 (389)
..++.++.+.++.++..|+..+.++... ..+.... +...++.+.+++....+ ...|+.+|.|++.....+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899999999999999999888776 2222222 24467888999987666 678999999999998888888777
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHh--c----CCcHHHHHHHhh-cCc--ccHHHHHHHHHHHhc
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--A----GIVPPLMRFLKD-AGG--GMVDEALAILAILAS 298 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~----~~i~~L~~ll~~-~~~--~~~~~a~~~L~~l~~ 298 (389)
++..+...+.+.........+.+|.|++..+.....+.. . .++..++...-+ +.. .-..+.+.++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888888887677788889999999998876544332 1 344444444433 222 345677889999999
Q ss_pred ChhhHHHhhccCC--hHHHHHHHhcCChHHH-HHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHH----------------
Q 016465 299 HQEGKTAIGQAEP--IPVLMEVIRTGSPRNR-ENAAAVLWAICTGDAEQLKIARELDAEEALKE---------------- 359 (389)
Q Consensus 299 ~~~~~~~i~~~~~--v~~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~---------------- 359 (389)
.+.+|..+.+... ...++.+-. .+..+| ...+++|.|.|...+.... +... .+..|..
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e-~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDE-SINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-Hhcc-hHHHHHHHHhhcCCccccCHHHH
Confidence 9999999887552 223333333 444554 5667888898886543332 2222 1222222
Q ss_pred --------HH-----HhCChHHHHHHHHHHHHHHhh
Q 016465 360 --------LS-----ESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 360 --------ll-----~~~~~~~~~~a~~~L~~l~~~ 382 (389)
++ ..+++.+|..-.++|-.|+..
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT 274 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT 274 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence 22 134788888888888777543
No 97
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.2e-07 Score=85.42 Aligned_cols=69 Identities=30% Similarity=0.530 Sum_probs=53.1
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhc----CCCCCCCCCccCcCCCCCcc----HHHHHHHHHHHHhcC
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLHTALTPN----YVLKSLIALWCENNG 79 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~----~~~~cp~c~~~~~~~~~~~n----~~~~~~i~~~~~~~~ 79 (389)
+..||||+....-|+.+.|||.||..||.+||.. +...||.|+..+...++.+- ......++.++..+|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 7899999999999998889999999999999974 34689999988876554332 222333556666666
No 98
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.5e-05 Score=71.60 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=171.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHH-HHHHHHhccccccccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEH-AVTALLNLSINDSNKG 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~-a~~~L~~l~~~~~~~~ 181 (389)
....+.+.+.+.+.+...+..+...+..+..+. ..+.+.+.+++..|.+.+.+.+...++. +..+...... +-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~---~Lg 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG---NLG 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH---hcC
Confidence 345666777777777778888888888887543 3455666788888888888765444433 2222211111 011
Q ss_pred hhcccCChHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 182 TIVNAGAIPDIVDVL---KNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL---~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
...+.+.++.+-.++ .+....++..|..+...+-.. +... -...++.++.-+.+..-+....++..++.+..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333455555555444 455677777776666554211 1111 11234555544444466778889999999999
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh-----------------------------HHHh--
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-----------------------------KTAI-- 306 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~~~i-- 306 (389)
..+.+-......++|.+.+.|.+..+++++.+..+|..+++..++ +..+
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 888888888899999999999999999999999999998862221 1111
Q ss_pred -hccCChHHHHHHHhc----CChHHHHHHHHHHHHHhhcC--HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 307 -GQAEPIPVLMEVIRT----GSPRNRENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 307 -~~~~~v~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
+++-.+..++.+++. .+...++.++.+++|++..- +.....+.. .+++-|-..+.+..|++|..++++|..+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 122345556666654 35677889999999998843 333322222 2455555666667899999999999554
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.41 E-value=3.2e-05 Score=70.07 Aligned_cols=250 Identities=14% Similarity=0.093 Sum_probs=173.2
Q ss_pred HHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccC--CHHHHHHHH
Q 016465 131 LAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG--SMEARENAA 208 (389)
Q Consensus 131 l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~--~~~~~~~a~ 208 (389)
+-+..+..+..+.-....+.+..++-+++.++|..+.+++..+..+.+.-..+.+.+.---++.-|..+ +...+++|.
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence 333444444444433444555545555569999999999999998888888887766555666777543 466788999
Q ss_pred HHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHH
Q 016465 209 ATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDE 288 (389)
Q Consensus 209 ~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 288 (389)
..+..+......... ...|++..++.+..+.++..+..++.+|..++..++ ..+...||+..|++.+.++..++.+.
T Consensus 90 kliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 999888765433222 246888999999999999999999999999986432 45668899999999998866668899
Q ss_pred HHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC-------Ch--HHHHHHHHHHHHHhhcCHHHHHHHHh-cCcHHHHH
Q 016465 289 ALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-------SP--RNRENAAAVLWAICTGDAEQLKIARE-LDAEEALK 358 (389)
Q Consensus 289 a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~ 358 (389)
.+.++..+..++..|..+...--+..++.-+.+. +. +.-..+..++..+-..=+.....-.. ..++..|+
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 9999999999999999877644455555444332 11 12233444444443321111111111 14788899
Q ss_pred HHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 359 ELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 359 ~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
..+..+++++|+....++..+-+..
T Consensus 247 ~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 247 DSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999988876543
No 100
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=4.3e-06 Score=75.86 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccccchhcccCChHHHHHHHccC
Q 016465 121 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNG 199 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~l~~L~~lL~~~ 199 (389)
...++..|..+++.-.--|.-+.+..+++.|+++|++++..+.--+...+.|+... +..+..+.+.|+++.|++++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34456667777765455577777888999999999987766667777888887654 45677788999999999999988
Q ss_pred CHHHHHHHHHHHHHhcCCchh--hHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc----hHHHHhc---C-
Q 016465 200 SMEARENAAATLFSLSVIDEN--KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN----KARAVRA---G- 269 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~---~- 269 (389)
+..++....|++.++-.+... +-+....-+...++++.+++.-.++..++++|.|++.+... +..+++. .
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 889999999999999766543 34455667889999999999999999999999999874321 1112221 1
Q ss_pred CcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHH-hhc-cCChHHHHHHHhc--------------------------
Q 016465 270 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA-IGQ-AEPIPVLMEVIRT-------------------------- 321 (389)
Q Consensus 270 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~-~~~v~~L~~ll~~-------------------------- 321 (389)
....|++.+...++-..+..+.+|.+++...+.... +.+ ...+..+..+|..
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 344566666666666666667777776644333222 111 1122222221110
Q ss_pred ---------------------------CChHHHHHHHHHHHHHhhcC---------HHHHHHHHhcCcHHHHHHHHHhCC
Q 016465 322 ---------------------------GSPRNRENAAAVLWAICTGD---------AEQLKIARELDAEEALKELSESGT 365 (389)
Q Consensus 322 ---------------------------~~~~~~~~a~~~L~~l~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~ 365 (389)
.+.+.-.+..|++.|+.... .+.++.+...|+-+.|..+..+.+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 01223345566666654321 266778888898888888888889
Q ss_pred hHHHHHHHHHHHHHH
Q 016465 366 DRAKRKAGSILELLQ 380 (389)
Q Consensus 366 ~~~~~~a~~~L~~l~ 380 (389)
+.+|+++..+|.+|.
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998874
No 101
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00016 Score=64.54 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=175.2
Q ss_pred HHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc------cc----cchhcccCChHHH
Q 016465 123 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND------SN----KGTIVNAGAIPDI 192 (389)
Q Consensus 123 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~------~~----~~~i~~~g~l~~L 192 (389)
..+..+..++. .|+-...+++.++++.|+.+|.+++.++....+..|..|...+ +. -+.+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 34555555664 6777778999999999999999999999999999998886532 21 2345678888888
Q ss_pred HHHHccCCH------HHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccC--ChhhHHHHHHHHHHhccCCC-ch
Q 016465 193 VDVLKNGSM------EARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQG-NK 262 (389)
Q Consensus 193 ~~lL~~~~~------~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~L~~~~~-~~ 262 (389)
++-+..-++ ...+.+..++-|+...+ +....+++.|.+..|+.-+... -.....+|..+|.-+..++. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 888764332 34556777888887664 4666777789999888866533 24456677888887777655 66
Q ss_pred HHHHhcCCcHHHHHHHhh---c------CcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHH
Q 016465 263 ARAVRAGIVPPLMRFLKD---A------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 333 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~---~------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~ 333 (389)
.....-.++..+++-+.- . +.+..++...+|+.+...+.++..++...++....-+++. ....+..+..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 667777888888876632 1 2345667788888888999999999998888766666655 45567889999
Q ss_pred HHHHhhcCH--HHHHHHHhcCcHHHHHHHHH
Q 016465 334 LWAICTGDA--EQLKIARELDAEEALKELSE 362 (389)
Q Consensus 334 L~~l~~~~~--~~~~~~~~~~~~~~L~~ll~ 362 (389)
|-....+++ .++..+++..++..+..+..
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 999888764 78888888888887776443
No 102
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.3e-05 Score=73.18 Aligned_cols=235 Identities=18% Similarity=0.183 Sum_probs=161.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
....+.|..+|..++.+++..+=.+|.++-.+-...-..+--...++.++.-+.++++.++..|+.-|..+..-....-.
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 45778889999988888887666666655432111011112235788999999999999999998877776654443334
Q ss_pred hcccCChHHHHHHHccCCHH-HHHHHHH---HHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016465 183 IVNAGAIPDIVDVLKNGSME-ARENAAA---TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~-~~~~a~~---~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
..-+|++..++..+.+..+. ++..+.. .+..+.........+--...+..+...+.++..+.+..++.-+..|-..
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 44578888888888766553 3332222 2223333222222222235677888888899999999999888777766
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
.+++.......+.+.|+.-|.+.++++...++..+.++|.++..... -.++..|+++......-....+..++..||
T Consensus 367 ~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 66666666678899999999999999999999999999987765522 125566666666666667778888888887
Q ss_pred hc
Q 016465 339 TG 340 (389)
Q Consensus 339 ~~ 340 (389)
..
T Consensus 444 ~l 445 (675)
T KOG0212|consen 444 LL 445 (675)
T ss_pred HH
Confidence 63
No 103
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.35 E-value=4.2e-07 Score=61.42 Aligned_cols=40 Identities=33% Similarity=0.808 Sum_probs=32.0
Q ss_pred cCcCCcccCcCC------------e-ecCCccCccHHHHHHHHhcCCCCCCCCC
Q 016465 13 RCPISLELMKDP------------V-IVSTGQTYERSCIQKWLDAGHKTCPKTQ 53 (389)
Q Consensus 13 ~Cpic~~~~~~p------------v-~~~c~h~~c~~ci~~~~~~~~~~cp~c~ 53 (389)
.|+||++.+.+| + ..+|||.|...||.+|+.. ..+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 499999999443 2 2479999999999999986 45899996
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00034 Score=60.18 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=189.0
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHH--HHhcCCChHHHHHHHHHHHhccc-cc
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLV--ELLSSTDPRTQEHAVTALLNLSI-ND 177 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~--~lL~~~~~~~~~~a~~~L~~l~~-~~ 177 (389)
+..+..+.++..+...|.++...|...|..++. .+..-+.+.++.....+- .+-...+.-.|......+..+.+ ++
T Consensus 125 vNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSp 203 (524)
T KOG4413|consen 125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISP 203 (524)
T ss_pred hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCH
Confidence 467888999999999999999999999999997 556666666665444332 22233455667777888877765 44
Q ss_pred cccchhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC--ChhhHHHHHHHHHH
Q 016465 178 SNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFN 254 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~ 254 (389)
+.-...-.+|.++.|..-|+. .+.-++..++.....|......+..+.+.|.|..+.+++... ++--...++.....
T Consensus 204 esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 204 ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 555555578888888887765 677788999999999999888899999999999999998643 33333334433333
Q ss_pred hcc----CCCchHHHHhc--CCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCC--hHHHHHHHhcCC-hH
Q 016465 255 LSI----YQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP--IPVLMEVIRTGS-PR 325 (389)
Q Consensus 255 L~~----~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~--v~~L~~ll~~~~-~~ 325 (389)
+-. .+-.-+.+++. -.++...+++...+++.++.|+.+++.+.++.++.+.+...|- ...++.-..+.+ ..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnaha 363 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHA 363 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccc
Confidence 322 22222333332 3456667778888999999999999999999999998888653 444444333333 34
Q ss_pred HHHHHHHHHHHHhhc---CHHHH---------H-HHH----h---cCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 326 NRENAAAVLWAICTG---DAEQL---------K-IAR----E---LDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 326 ~~~~a~~~L~~l~~~---~~~~~---------~-~~~----~---~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
-++.++.+|.+++.. .++.. . .+. + ..-......+++.+.++++-.+.+.+..+.
T Consensus 364 kqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 364 KQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred hHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 467788888888762 12111 1 111 1 123445556777778888888877666553
No 105
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.33 E-value=9.1e-06 Score=72.69 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=140.4
Q ss_pred cchhcccCChHHHHHHHccCCHH--HHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhc
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSME--ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLS 256 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~--~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~ 256 (389)
++.+...|+++.|++++..++.+ ++..|+++|-.+. ..+++..+...| +..++.+-+. ..++.....+..|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 45667789999999999998755 5888999998764 345667776666 5555555543 35677888899999998
Q ss_pred cCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC--hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHH
Q 016465 257 IYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 333 (389)
Q Consensus 257 ~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~ 333 (389)
.+.+ ....++..|+++.++-.....++.+...+.-+|+|++-+ -..+..+++...-..|+.+-.+.++-++..|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 8665 557899999999999999999999999999999999854 4567888888888999999888888899999999
Q ss_pred HHHHhhcCHHHHHHHHhcCcHHHHHHHHHh
Q 016465 334 LWAICTGDAEQLKIARELDAEEALKELSES 363 (389)
Q Consensus 334 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 363 (389)
..-|+.+ .+....+.+.|.+..+-.++.+
T Consensus 331 V~vlat~-KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 331 VAVLATN-KEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred Hhhhhhh-hhhhHHHhhccchhhhhhhhhc
Confidence 9888874 3455555555555444444443
No 106
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.9e-07 Score=88.31 Aligned_cols=53 Identities=21% Similarity=0.513 Sum_probs=47.3
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCC
Q 016465 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT 62 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~ 62 (389)
.-++||+|..=..|-|++.|||.||..|++.......+.||.|+..|...++.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 45899999988899999999999999999999987788999999998776653
No 107
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00069 Score=66.83 Aligned_cols=272 Identities=18% Similarity=0.140 Sum_probs=175.0
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcc
Q 016465 107 DALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 107 ~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
+-+...+. ..++.++.-|+..+..++. +.+....+...|.+..|+.+|.+ -+..|+.++.+|..|+++.+.-..-.+
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 33444443 3456788888888877775 77888889999999999999966 578999999999999998877777777
Q ss_pred cCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchh--hH-------------HHHh-----------------------
Q 016465 186 AGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDEN--KV-------------AIGA----------------------- 226 (389)
Q Consensus 186 ~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~--~~-------------~~~~----------------------- 226 (389)
.|++.-+..++- +.++..+..++..+..|..+.-. +. .+..
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence 888877777774 44577777777777765422110 00 0000
Q ss_pred ----------------------------------------------------------------------hCcHHHHHHH
Q 016465 227 ----------------------------------------------------------------------AGAIPALIRL 236 (389)
Q Consensus 227 ----------------------------------------------------------------------~~~i~~L~~l 236 (389)
.+.++.+.++
T Consensus 1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lel 2011 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLEL 2011 (2235)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHH
Confidence 0111111111
Q ss_pred hccCCh--hhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChH
Q 016465 237 LCDGTP--RGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIP 313 (389)
Q Consensus 237 l~~~~~--~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~ 313 (389)
+...++ .....-..++..|..... -..++-..|.+|.++..+...+..+-..|+.+|..|+.+.-....+.....+.
T Consensus 2012 m~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~ 2091 (2235)
T KOG1789|consen 2012 MSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCID 2091 (2235)
T ss_pred hcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccch
Confidence 111110 111111112222222211 12223345889999999888777888999999999999999999998877888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhC-------ChHHHHHHHHHHHHHHh
Q 016465 314 VLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-------TDRAKRKAGSILELLQR 381 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~-------~~~~~~~a~~~L~~l~~ 381 (389)
.+++.+...-.. ---|+.+|-.+...+ .+.+...++.|.++.|+.++... -...+....++|+....
T Consensus 2092 ~~m~~mkK~~~~-~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk~~~~ 2166 (2235)
T KOG1789|consen 2092 GIMKSMKKQPSL-MGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALKSAIL 2166 (2235)
T ss_pred hhHHHHHhcchH-HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHHHHHH
Confidence 888888764322 336777887776643 45667788899999999999632 12344445555555543
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.25 E-value=5.6e-05 Score=68.55 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=136.8
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016465 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
..++.+++.+.+.+..+|..|...++.+. ....++.+..++.+.++.++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 47899999999999999999998865543 3457999999999999999999999888763
Q ss_pred hhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcc------------cHHHHHHH
Q 016465 226 AAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGG------------MVDEALAI 292 (389)
Q Consensus 226 ~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~------------~~~~a~~~ 292 (389)
....++.++.++. +.+..++..+.++|..+- +...+..++..+.+.... ++..+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 2456788999888 588999999999999773 334477888888775522 23333333
Q ss_pred HHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Q 016465 293 LAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 372 (389)
Q Consensus 293 L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 372 (389)
|..+ .+...+..+...+...+..++..|..+|..+...+ ..+...+...+.+.+..++..+
T Consensus 173 l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 173 LGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHH
Confidence 3322 23357889999999998999999999999888764 2244555666666666666666
Q ss_pred HHHHHHH
Q 016465 373 GSILELL 379 (389)
Q Consensus 373 ~~~L~~l 379 (389)
...|..+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 6666554
No 109
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00014 Score=69.09 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=173.5
Q ss_pred hHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhChhhhHHHHh-cCCHHHHHHHhcC--CChHHHHHHHHHHHhccc-ccc
Q 016465 104 AAIDALLGKLANGNV-EEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSS--TDPRTQEHAVTALLNLSI-NDS 178 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~lL~~--~~~~~~~~a~~~L~~l~~-~~~ 178 (389)
+.++.|+.......+ .++..++.+|+.++.+-... ...-. +.++..++.-... ++..+|-.|+.+|.|-.. ...
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 445555555444433 47899999999999743322 22222 2455555555443 367899999999987321 111
Q ss_pred ccc-hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 179 NKG-TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 179 ~~~-~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+-. ..-..-+++...+.-++++.+++..|..+|..+-.. -+.-..-+....+..-+..++++++++...+.....++|
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 111 111122455666777788999999999999887532 222222233445566666778889999999998888887
Q ss_pred cCCCch----HH------------HHh---cCCcHHHHHHHhhc-------CcccHHHHHHHHHHHhcChhhHHHhhccC
Q 016465 257 IYQGNK----AR------------AVR---AGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIGQAE 310 (389)
Q Consensus 257 ~~~~~~----~~------------~~~---~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 310 (389)
...-.. .. +.+ .+++|.|+++|... +-.....|-.+|.-++... ...
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-------~D~ 360 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-------GDD 360 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-------ccc
Confidence 432110 11 111 25678888888651 1234555656666555321 123
Q ss_pred ChHHHHHHH----hcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016465 311 PIPVLMEVI----RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 311 ~v~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
.++.++.++ ++.+.+-++.|+.+++.+..+....+..-.-.++++.++.++.+++-.+++.++|.+..+.++-.
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 455555554 55678889999999998887765444445556789999999998889999999999999987643
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.23 E-value=7e-06 Score=70.01 Aligned_cols=184 Identities=20% Similarity=0.161 Sum_probs=116.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC--hhhhHHHHhc--CCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCCh
Q 016465 114 ANGNVEEQRAAAGELRLLAKRN--ADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAI 189 (389)
Q Consensus 114 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~--g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l 189 (389)
.+.|++.+.+|+..|..+..++ ......+.+. ..+..+...+.+....+...|+.++..++..-...-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999999877 2333333222 56667777777767788899999999987643222211124578
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-chHHHH--
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAV-- 266 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~-- 266 (389)
+.|++.+.+++..++..|..+|..+...-.....+ .++.+...+.+.++.++..++..+..+...-. ....+-
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999998899999999999887654311111 14667777888899999999999888765443 111221
Q ss_pred --hcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016465 267 --RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 267 --~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
-..+++.+...+.+.++++++.|-.++..+...-+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 14567888889999999999999999998865433
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=2.2e-06 Score=50.93 Aligned_cols=40 Identities=53% Similarity=0.706 Sum_probs=37.5
Q ss_pred ChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 016465 135 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 174 (389)
Q Consensus 135 ~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~ 174 (389)
+++++..+++.|+++.|+++|++++.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999986
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.18 E-value=1.1e-05 Score=68.85 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=115.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCc---hhhHHHHh--hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCc
Q 016465 197 KNGSMEARENAAATLFSLSVID---ENKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 271 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~~---~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i 271 (389)
.+.+.+.+..++.-|..+.... .....+.. ...+..+...+.+....+...|+.++..++..-...-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5567888888888888886544 22222222 155667777777777889999999999998755444333345678
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh-
Q 016465 272 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE- 350 (389)
Q Consensus 272 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 350 (389)
+.|++.+.+....+++.|..+|..+......-..+ .+..+...+.+.++.+|..++..|..+....+.....+..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 89999998888889999999999998765411111 1456666677889999999999998887654411111111
Q ss_pred ---cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 351 ---LDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 351 ---~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
..+++.+..++.+.++++|..|..++..+.+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 34778888899999999999999999998554
No 113
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.17 E-value=1.5e-06 Score=79.17 Aligned_cols=69 Identities=23% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc-cHHHHHHHHHH
Q 016465 5 SPVIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP-NYVLKSLIALW 74 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~-n~~~~~~i~~~ 74 (389)
+.++.+++.||+|..++.||+. ..|||.||+.|+..|... ...||.|+.........+ ....++.+..+
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 4457788999999999999998 599999999999999997 778999988876554443 34445555443
No 114
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.7e-06 Score=77.60 Aligned_cols=74 Identities=24% Similarity=0.501 Sum_probs=56.6
Q ss_pred CCCCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCC-----CCccHHHHHHHHHHHHh
Q 016465 3 HRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA-----LTPNYVLKSLIALWCEN 77 (389)
Q Consensus 3 ~~~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~-----~~~n~~~~~~i~~~~~~ 77 (389)
+.+..+..+|.|-+|...+-+||+++|||+||..||.+.++. ...||.|+.++.... ..+|.....++..++..
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345567889999999999999999999999999999997774 567999998876321 11244555666666544
No 115
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00029 Score=67.37 Aligned_cols=254 Identities=14% Similarity=0.150 Sum_probs=135.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccC
Q 016465 108 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG 187 (389)
Q Consensus 108 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g 187 (389)
.+.+-|++++.-++-.|+.+|++++. ++-. ....|-+-+++++.++.+|+.|+.+...+-...+... +-
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s--~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~ 179 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICS--PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EH 179 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCC--HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HH
Confidence 34445567777788888888888874 2221 1345788889999999999999888877644222111 11
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHh--hCcH-----------------------------HHHHH
Q 016465 188 AIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGA--AGAI-----------------------------PALIR 235 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~--~~~i-----------------------------~~L~~ 235 (389)
+++...++|.+.+..+....+..+..++... +.-..+.. .+++ -.++.
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 2333444444444444444444444443321 11111110 0111 12233
Q ss_pred HhccCChhhHHHHHHHHHHhccCCC---chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhh-----
Q 016465 236 LLCDGTPRGKKDAATAIFNLSIYQG---NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG----- 307 (389)
Q Consensus 236 ll~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----- 307 (389)
+|..++.+......-+|..++.+.+ |....+-...+..+..+. ++..++..|+.+|+.+..+.++-...+
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L 337 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNML 337 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence 3344444444444445555443322 111111111122222221 577888888888888776555421111
Q ss_pred ------ccCCh----HHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Q 016465 308 ------QAEPI----PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 308 ------~~~~v----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 377 (389)
+..++ ..++..|++.+..++..|+..+..|...+ +... .+.-|+.++...+++.|...+.-+.
T Consensus 338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12222 34666777777788888888887777644 2322 4566888888888888876665555
Q ss_pred HHHh
Q 016465 378 LLQR 381 (389)
Q Consensus 378 ~l~~ 381 (389)
.+.+
T Consensus 411 ~laE 414 (866)
T KOG1062|consen 411 ELAE 414 (866)
T ss_pred HHHH
Confidence 5443
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.13 E-value=2e-05 Score=55.91 Aligned_cols=86 Identities=37% Similarity=0.520 Sum_probs=70.1
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh
Q 016465 148 IPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA 226 (389)
Q Consensus 148 v~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~ 226 (389)
++.|++.| +++++.+|..++.+|+.+- ....++.|+.+++++++.++..|+.+|+.+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899989 7789999999999998542 2356999999999999999999999999872 3
Q ss_pred hCcHHHHHHHhccCC-hhhHHHHHHHHH
Q 016465 227 AGAIPALIRLLCDGT-PRGKKDAATAIF 253 (389)
Q Consensus 227 ~~~i~~L~~ll~~~~-~~~~~~a~~~L~ 253 (389)
...++.|.+++.+++ ..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458899999988764 456888888774
No 117
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.2e-05 Score=71.35 Aligned_cols=254 Identities=16% Similarity=0.087 Sum_probs=164.7
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-----
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND----- 177 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~----- 177 (389)
..+..-++.+..++|+.++.+|+..|..|..+..-.+ -.....++++++++..+|..|++++.-.+.-.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3445558888888999999999999988886332111 23567788999999999999977766543311
Q ss_pred -cc-cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHH-HH
Q 016465 178 -SN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA-IF 253 (389)
Q Consensus 178 -~~-~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~-L~ 253 (389)
+. ...+. ..++..+...+.+.+..++..|+.+|+.+-... +...+...... ..-++. .......... ..
T Consensus 271 ~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKl----ms~lRR--kr~ahkrpk~l~s 343 (823)
T KOG2259|consen 271 RESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKL----MSRLRR--KRTAHKRPKALYS 343 (823)
T ss_pred chhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHH----hhhhhh--hhhcccchHHHHh
Confidence 11 11222 246778888999999999999999998774332 12111111111 111110 0010111111 11
Q ss_pred Hh--cc------------CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHH
Q 016465 254 NL--SI------------YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 319 (389)
Q Consensus 254 ~L--~~------------~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll 319 (389)
+- ++ .++....++..|+-..++.-|.++-.+|+..|+..++.|+.+.+.-.. ..+.-|+.++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~----~aldfLvDMf 419 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV----RALDFLVDMF 419 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHh
Confidence 11 11 122334567778888889999888889999999999999976443221 3678889999
Q ss_pred hcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 320 RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 320 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
.+....+|..|..+|..++.+- .++...++.++..+.+.++++|+....+|++.
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888999999999999888752 23334566777777777788887777777654
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.10 E-value=1.3e-05 Score=56.94 Aligned_cols=86 Identities=35% Similarity=0.447 Sum_probs=70.3
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016465 106 IDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 106 i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
++.|++.| +++++.++..+++.|..+... .+++.|+++++++++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 788999999999999955321 35899999999999999999999998873
Q ss_pred ccCChHHHHHHHccC-CHHHHHHHHHHHH
Q 016465 185 NAGAIPDIVDVLKNG-SMEARENAAATLF 212 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~-~~~~~~~a~~~L~ 212 (389)
....++.|.+++.++ +..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 455899999999875 4566888888774
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.10 E-value=0.00054 Score=64.10 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=165.6
Q ss_pred HHHHHHHHhhChhhhHHHHhcCCHHHHHHHh----------cCCChHHHHHHHHHHHhccc-cccccchhcccCChHHHH
Q 016465 125 AGELRLLAKRNADNRVCIAEAGAIPLLVELL----------SSTDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIV 193 (389)
Q Consensus 125 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL----------~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~l~~L~ 193 (389)
+.+|.-+++ ++.+.+.+....++..|.++- ...+..+...|+++|.|+.. ++..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 445555554 445555555555666666655 23478899999999999766 457788888999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHhcCC-chhhHHHHhh-CcHHHHHHHhcc-----------------CChhhHHHHH
Q 016465 194 DVLKNG-----SMEARENAAATLFSLSVI-DENKVAIGAA-GAIPALIRLLCD-----------------GTPRGKKDAA 249 (389)
Q Consensus 194 ~lL~~~-----~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~-~~i~~L~~ll~~-----------------~~~~~~~~a~ 249 (389)
+.|+.. +.++.-...++|.-++.. .+.+..+.+. +++..+...|.. .+.....+++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 678888888888887754 4555555544 677777766531 1234466788
Q ss_pred HHHHHhccCCCchHHHHhcCCcHHHHHHHhh---------cCcccHHHHHHHHHHHhcC-hhh-------HHH----hhc
Q 016465 250 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILASH-QEG-------KTA----IGQ 308 (389)
Q Consensus 250 ~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~-~~~-------~~~----i~~ 308 (389)
+++.|++........-...+.++.++.++.. +-......++.+|.|+-.. ... ... ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998755443321223344455444432 1234456677777766211 000 101 112
Q ss_pred cCChHHHHHHHhcC----C----hHHHHHHHHHHHHHhhcCHHHHHHHHh----------------cCcHHHHHHHHHhC
Q 016465 309 AEPIPVLMEVIRTG----S----PRNRENAAAVLWAICTGDAEQLKIARE----------------LDAEEALKELSESG 364 (389)
Q Consensus 309 ~~~v~~L~~ll~~~----~----~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~~L~~ll~~~ 364 (389)
...+..|+.+|... . .+.-.-.+.+|.+++..+...++.+.. ..+-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 23577777777542 1 123345566777777776555555543 24677999999999
Q ss_pred ChHHHHHHHHHHHHHHhhH
Q 016465 365 TDRAKRKAGSILELLQRID 383 (389)
Q Consensus 365 ~~~~~~~a~~~L~~l~~~~ 383 (389)
.+.+|..++++|..|++.+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 9999999999999998543
No 120
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0025 Score=60.57 Aligned_cols=219 Identities=15% Similarity=0.154 Sum_probs=155.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-ccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNK 180 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~ 180 (389)
..+..+.++.+|+++-+-++..|+..+..+....++... ..+|.|.+=|.++|+.++..|+.+++.|+... .+-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 356778899999999999999999999998876665422 35799999999999999999999999999733 332
Q ss_pred chhcccCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC-hhhHHHHHHHHH--Hhc
Q 016465 181 GTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIF--NLS 256 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~--~L~ 256 (389)
-. .-|.+.++|.+. +.-+....+...++|+..++- .....+++|.+++.+.. ..+..++..++. +++
T Consensus 217 L~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 217 LQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred cc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 22 347788888643 444555677888888765432 12457789999987653 334444444433 333
Q ss_pred cCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 016465 257 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 257 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
....+....+.. ++..|-.++.+.+++++..++-++..+.. ++...++ --..+++.|.+.++.+|..|+..|.
T Consensus 288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence 322222222221 46677778889999999999999999884 4443332 3456788999999999999999998
Q ss_pred HHhhc
Q 016465 336 AICTG 340 (389)
Q Consensus 336 ~l~~~ 340 (389)
.+...
T Consensus 362 gmVsk 366 (877)
T KOG1059|consen 362 GMVSK 366 (877)
T ss_pred HHhhh
Confidence 87764
No 121
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.06 E-value=0.00012 Score=69.32 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=109.4
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch--H-HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHH
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK--A-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 304 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~--~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 304 (389)
..+..++..|++.++.++..|+..+..++.--..+ . .+...|. .|.+.|....+++.-..+++|..+...-.-..
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 34567778889999999999999998887533222 1 2222332 46677777888888888888777764221111
Q ss_pred -HhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 305 -AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 305 -~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.-=-.+.++.|..+|++....++++.+..+..++...++....-.-..+---|++++.+....+|+.|...+..+++
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 10113688999999999999999999999999999887654433333445567888899999999999988888765
No 122
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.06 E-value=0.00027 Score=65.71 Aligned_cols=234 Identities=15% Similarity=0.157 Sum_probs=143.6
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh--hHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccc
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN--RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 178 (389)
.-...+...+..|++..+.++.+|+.....++.--... .+.+...| ..|.+-|....+++.-..+.++..+.+.-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 34567888899999999999999999988887522211 22344445 456677778888888888888777654322
Q ss_pred ccc-hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh----hHHHHhhCcHHHHHHHhccCChhhHHHHHHHHH
Q 016465 179 NKG-TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN----KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 253 (389)
Q Consensus 179 ~~~-~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 253 (389)
.+. +---.|++|.|..+|++....+.......++.++...+. ++.+ .+--.|+++|++-+.+++.+|...++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 221 111368999999999999888998888888888765432 2222 23346777888888889888877776
Q ss_pred HhccCCCchH-------------------------HHHhc-C---CcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh--
Q 016465 254 NLSIYQGNKA-------------------------RAVRA-G---IVPPLMRFLKDAGGGMVDEALAILAILASHQEG-- 302 (389)
Q Consensus 254 ~L~~~~~~~~-------------------------~~~~~-~---~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-- 302 (389)
.++..-..+. .+.+. | ++|.|+.=-..++..++.-.+++++-+-..-..
T Consensus 756 ~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s 835 (975)
T COG5181 756 CISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS 835 (975)
T ss_pred hHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH
Confidence 6653211110 01111 2 122222222235566777666666655432221
Q ss_pred HHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 303 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 303 ~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
+..+ .-..+.|-..|.+.++--|..|..++.+|+.+.
T Consensus 836 ~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 836 LDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 1111 123344444555556666777777777777654
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00036 Score=65.06 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=142.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 184 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 184 (389)
.+|.++..+.+....++..|..+...+...-+.+... -.++.++.-+......-...++..|+.++...+.+-...
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 4444444444556677777777766665432222111 123444444434355667788999998887777777777
Q ss_pred ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHH
Q 016465 185 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 264 (389)
Q Consensus 185 ~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~ 264 (389)
.+.++|.+.+.|.+..++++..+..+|..++..-++... ...++.|++.+.++...+ ..+...|..-+ ...
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~-~e~~~~L~~tt-----FV~ 363 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYT-PECLDSLGATT-----FVA 363 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccch-HHHHHhhccee-----eee
Confidence 788999999999999999999999999999766554431 346678888887664333 23333333211 112
Q ss_pred HHhcCCcHHHHHHHh----hcCcccHHHHHHHHHHHhcChhhHHHhhc--cCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 265 AVRAGIVPPLMRFLK----DAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
.+++..+..++.+|. ..+......++.++.|++..-+....+.. ...++.|-..+....|++|..+.++|..+.
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 233444445555554 46777889999999999976544444432 124445555555567999999999997776
Q ss_pred hc
Q 016465 339 TG 340 (389)
Q Consensus 339 ~~ 340 (389)
..
T Consensus 444 e~ 445 (569)
T KOG1242|consen 444 ER 445 (569)
T ss_pred HH
Confidence 64
No 124
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.2e-06 Score=73.85 Aligned_cols=47 Identities=23% Similarity=0.573 Sum_probs=39.6
Q ss_pred CcCcCCcccCcC--Ce-ecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016465 12 FRCPISLELMKD--PV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 12 ~~Cpic~~~~~~--pv-~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
++|.||++-+.+ -+ .|||+|.|...||..|+.+....||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 699999998864 33 589999999999999999765679999987653
No 125
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.04 E-value=1.3e-05 Score=47.56 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 341 DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+++.++.+.+.|+++.|+.++.++++++++.|.|+|++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788899999999999999999999999999999999974
No 126
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0013 Score=63.18 Aligned_cols=259 Identities=13% Similarity=0.123 Sum_probs=156.3
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~ 181 (389)
.+..|.+.+++++.++-++..|+.+...+....++.-+.+ ++...++|.+.+..+...++..+..++... +.-.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 4577888899999999999999999999988776654443 355555565555555555555555554432 1111
Q ss_pred hhcccCChHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCchhhHHHH------------------hh-
Q 016465 182 TIVNAGAIPDIVDVLKN---------------GSMEARENAAATLFSLSVIDENKVAIG------------------AA- 227 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~~~------------------~~- 227 (389)
.+.+ .++.|+..|++ .+|-++...++.|.-|..++......+ +.
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI 293 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI 293 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH
Confidence 1111 33333333321 134455555555555544432211111 00
Q ss_pred --CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHH---------H--hcCCc----HHHHHHHhhcCcccHHHHH
Q 016465 228 --GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA---------V--RAGIV----PPLMRFLKDAGGGMVDEAL 290 (389)
Q Consensus 228 --~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~---------~--~~~~i----~~L~~ll~~~~~~~~~~a~ 290 (389)
..+..+..+ ..+...+..|+.+|+.+..++++-.+. + +..++ ..++++|++++..++..|+
T Consensus 294 LYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrral 371 (866)
T KOG1062|consen 294 LYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRAL 371 (866)
T ss_pred HHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 111112111 235677778888888776655432111 1 12222 4678899999999999999
Q ss_pred HHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHH
Q 016465 291 AILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAK 369 (389)
Q Consensus 291 ~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~ 369 (389)
..+..|......+. .++.|+.+|.+.+++.+...+.-+..++.. .|+.+ -.++.+...+.....-++
T Consensus 372 ELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~------W~idtml~Vl~~aG~~V~ 439 (866)
T KOG1062|consen 372 ELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR------WHIDTMLKVLKTAGDFVN 439 (866)
T ss_pred HHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch------hHHHHHHHHHHhcccccc
Confidence 99988875443222 467889999999999998888877777764 34333 368888888888766666
Q ss_pred HHHH-HHHHHHHhh
Q 016465 370 RKAG-SILELLQRI 382 (389)
Q Consensus 370 ~~a~-~~L~~l~~~ 382 (389)
..+. .+|+.+++.
T Consensus 440 ~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 440 DDVVNNLLRLIANA 453 (866)
T ss_pred hhhHHHHHHHHhcC
Confidence 6544 666666654
No 127
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00017 Score=65.86 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=144.3
Q ss_pred HHHHHHhccccc-cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCChh
Q 016465 166 AVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPR 243 (389)
Q Consensus 166 a~~~L~~l~~~~-~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~~ 243 (389)
++..|..++.+- -.|.-+.+..+.+.|+++|++++..+.-.+...++|+... ..-+..+...|+|..|+.++.+.|..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 334444555432 3355666778999999999998877777788888887654 45677888899999999999988999
Q ss_pred hHHHHHHHHHHhccCCCc--hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh----hHHHhhcc----CChH
Q 016465 244 GKKDAATAIFNLSIYQGN--KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE----GKTAIGQA----EPIP 313 (389)
Q Consensus 244 ~~~~a~~~L~~L~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~----~~v~ 313 (389)
.+....|++..+..+..+ +-++...-++..++++..++.-.+++.++.+|.|+..+.. .+..+.+. -..+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999875543 4456777889999999999999999999999999986322 23333322 1456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh-cCcHHHHHHHH
Q 016465 314 VLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELS 361 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll 361 (389)
.|++.+...+|-.....+.+|.+++..+......+.+ ...+..+.+++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 7777778788777777899999988876555444443 34444444443
No 128
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.7e-06 Score=67.63 Aligned_cols=78 Identities=35% Similarity=0.500 Sum_probs=71.5
Q ss_pred CCCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCCC
Q 016465 4 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 81 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~~ 81 (389)
....+|+.++|.|..++|++||+.|.|-||.|.-|.+.+..-+..-|+++.+++...+.||..+...|..|.+.+.|.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999999999999875666999999999999999999999999999988775
No 129
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00037 Score=66.31 Aligned_cols=272 Identities=18% Similarity=0.152 Sum_probs=157.4
Q ss_pred hhHHHHHHHhhcCC-------CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 016465 103 RAAIDALLGKLANG-------NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 103 ~~~i~~l~~~l~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~ 175 (389)
.+.+|.|++.|..+ ++.....|-.+|..++.-. ++.++. .++|.+=+-+++++..-|+.|+-+++.+-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~---~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV---GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh---cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 47889999999763 2446667777777766421 112222 344444456667788889999999998766
Q ss_pred cc-cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016465 176 ND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 176 ~~-~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
.+ +.+..-...+++|.++.++.+++.-++..++|.++.++..-+ .-....-.+.++.++.-|+ +.+.+..+++|++
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf 472 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAF 472 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHH
Confidence 44 344444456789999999999999999999999999986533 1112222355666666665 4678999999999
Q ss_pred HHhccC--C---Cc-hHHHHh---cCCcHHHHHHHhh---cCcccHHHHHHHHHHHhcChhh-HHHhhcc---CChHHHH
Q 016465 253 FNLSIY--Q---GN-KARAVR---AGIVPPLMRFLKD---AGGGMVDEALAILAILASHQEG-KTAIGQA---EPIPVLM 316 (389)
Q Consensus 253 ~~L~~~--~---~~-~~~~~~---~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~---~~v~~L~ 316 (389)
.+|+.. . .+ ...... ..++..|++.-.. .+.+++..|..+|..+..+... ...++.. -....|-
T Consensus 473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~ 552 (859)
T KOG1241|consen 473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLD 552 (859)
T ss_pred HHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 999832 1 11 111222 1223333333332 4567889999999998864332 1111110 0122233
Q ss_pred HHHhc-----CC----hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHH
Q 016465 317 EVIRT-----GS----PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQ 380 (389)
Q Consensus 317 ~ll~~-----~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~ 380 (389)
+.+++ .+ .+++..-+.+|..+...-........ ..++..++++++++ +..+.+.|.-++..+.
T Consensus 553 q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~-d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 553 QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS-DQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH-HHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 33331 11 23344555555554443211111111 23666777788773 4445555555555443
No 130
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7e-06 Score=67.92 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=42.7
Q ss_pred CCCCCCcCcCCcccCcCCeec-CCccCccHHHHHHHHhc-CCCCCCCCCccCc
Q 016465 7 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPKTQQTLL 57 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~-~c~h~~c~~ci~~~~~~-~~~~cp~c~~~~~ 57 (389)
.-..+-+||+|++....|.+. +|||.||-.||..-+.. ..++||.|+.+..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 356678999999999999874 69999999999887763 3589999997764
No 131
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.96 E-value=0.0016 Score=61.05 Aligned_cols=243 Identities=17% Similarity=0.230 Sum_probs=158.6
Q ss_pred ccchhHHHHHHHhh----------cCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-----ChHHHH
Q 016465 100 DCDRAAIDALLGKL----------ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQE 164 (389)
Q Consensus 100 ~~~~~~i~~l~~~l----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-----~~~~~~ 164 (389)
......+..|+++- ...++++..+|+++|.|+...++..|..+.+.|..+.+++.|+.. +.++.-
T Consensus 18 l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~F 97 (446)
T PF10165_consen 18 LFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEF 97 (446)
T ss_pred hccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHH
Confidence 34455677776665 245688999999999999999999999999999999999999886 677888
Q ss_pred HHHHHHHhccc-cccccchhcc-cCChHHHHHHHcc-----------------CCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016465 165 HAVTALLNLSI-NDSNKGTIVN-AGAIPDIVDVLKN-----------------GSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 165 ~a~~~L~~l~~-~~~~~~~i~~-~g~l~~L~~lL~~-----------------~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
...++|.-++. ....+..+++ .+++..++..|.. .+.+....++.+++|+.........-.
T Consensus 98 l~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~ 177 (446)
T PF10165_consen 98 LDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEE 177 (446)
T ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchh
Confidence 88888887765 4466666664 5777777776631 133456778889999875533222111
Q ss_pred hhCcHHHHHHHhcc---------CChhhHHHHHHHHHHhccCCC-c-------hHH----HHhcCCcHHHHHHHhh----
Q 016465 226 AAGAIPALIRLLCD---------GTPRGKKDAATAIFNLSIYQG-N-------KAR----AVRAGIVPPLMRFLKD---- 280 (389)
Q Consensus 226 ~~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~L~~~~~-~-------~~~----~~~~~~i~~L~~ll~~---- 280 (389)
..+.++.++.++.. ........+..+|.|+-.... . ... ......+..|+++|..
T Consensus 178 ~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~ 257 (446)
T PF10165_consen 178 FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDK 257 (446)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHh
Confidence 12333333333221 123445666777777621100 0 000 1122346777777765
Q ss_pred -cC---cccHHHHHHHHHHHhcC-hhhHHHhhc----------------cCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 281 -AG---GGMVDEALAILAILASH-QEGKTAIGQ----------------AEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 281 -~~---~~~~~~a~~~L~~l~~~-~~~~~~i~~----------------~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.. .+.....+.+|.+++.. ...|..+.. ...-..|++++.+..+.++..+...|+.||.
T Consensus 258 ~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 258 YEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred cCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 11 23455677788888765 333333221 2356789999999889999999999999998
Q ss_pred cCH
Q 016465 340 GDA 342 (389)
Q Consensus 340 ~~~ 342 (389)
.+.
T Consensus 338 ~d~ 340 (446)
T PF10165_consen 338 EDA 340 (446)
T ss_pred hhH
Confidence 664
No 132
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.95 E-value=0.00038 Score=67.75 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=131.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-ccc-------
Q 016465 108 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN------- 179 (389)
Q Consensus 108 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~------- 179 (389)
.|++.+.++|.+.|+.|+.-|..=...+..+-+.=.+...+..++++|++.+.+++..|+.+++-|++. .+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 688888999999999998877653332222222223346889999999999999999999999866531 000
Q ss_pred ---------cch----------------------hcccCChHHHHHHHccC------CHHHHHHHHHHHHHhcCCc-hhh
Q 016465 180 ---------KGT----------------------IVNAGAIPDIVDVLKNG------SMEARENAAATLFSLSVID-ENK 221 (389)
Q Consensus 180 ---------~~~----------------------i~~~g~l~~L~~lL~~~------~~~~~~~a~~~L~~Ls~~~-~~~ 221 (389)
+++ .....+++.+...|... ...++..++..+..+-..- ..-
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 000 00111222222222211 1113333333333221110 000
Q ss_pred HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcCh
Q 016465 222 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQ 300 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 300 (389)
.. ...+.+..+..-+.+....+++.|+.+|+.++..-... .-.+++..|++=|.. ........-+.+|+.++...
T Consensus 169 ~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 169 PN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred cc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 00 12234444555555666788999999999987643211 122334444444433 33344445566777777654
Q ss_pred hhHHHhhccCChHHHHHHH---hcCChHHHHHHHHHHHHHhhcCHHH
Q 016465 301 EGKTAIGQAEPIPVLMEVI---RTGSPRNRENAAAVLWAICTGDAEQ 344 (389)
Q Consensus 301 ~~~~~i~~~~~v~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~ 344 (389)
..|.----...++.+.++. ...+++.|+..+.++..+....|..
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 4433322235778888888 5667899999999999888876543
No 133
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0033 Score=58.31 Aligned_cols=262 Identities=17% Similarity=0.145 Sum_probs=136.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhccc
Q 016465 107 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA 186 (389)
Q Consensus 107 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 186 (389)
|.|-..|++.-..+..++++.+..++..+- ...+.+ ..+..|-.+|++.....|-.|+++|..|+...+.+-..++.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 333344444446788999999999887551 112221 35677778888888889999999999998765555444432
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch----
Q 016465 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK---- 262 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~---- 262 (389)
.+-.++.+.+..+...|...|..-. ++++...++ ..+..++.+-+...+.-+..++..|+..-+.+
T Consensus 344 ----evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 344 ----EVESLISDENRTISTYAITTLLKTG-TEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred ----hHHHHhhcccccchHHHHHHHHHcC-chhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 2233344444444444444433221 111111111 11111222112222222222233332221111
Q ss_pred -----HHHHhcCCc-------HHHHHHHhhcCcccHHHHHHHHHHHhcChhhHH---Hh----hccC--------ChHHH
Q 016465 263 -----ARAVRAGIV-------PPLMRFLKDAGGGMVDEALAILAILASHQEGKT---AI----GQAE--------PIPVL 315 (389)
Q Consensus 263 -----~~~~~~~~i-------~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~i----~~~~--------~v~~L 315 (389)
..+.+.|+. +.+.+++. ..++-++.|+..|+..-.+.+.-+ .| .++| .+..+
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 112233432 22333332 345556666666555443222111 11 1111 23344
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 316 MEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 316 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
.+-+--.+.-+|..|+.+|..++.+-.+ .+....+...|.+.+++.|.++|.+|..+|++|...+.+
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~ 559 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDAC 559 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhh
Confidence 4444445677889999999887764211 122234566788899999999999999999999866543
No 134
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.95 E-value=0.001 Score=63.23 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=141.6
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh--hHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN--RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 180 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 180 (389)
...+...+..|++.++.++.+|+..+..++.--... -+.+...| -.|.+.|..+.+++.-..+.+|..+...-...
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 345666778888999999999999999987532222 12333345 45778888888888877777776654321111
Q ss_pred chhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch----hhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016465 181 GTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 181 ~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
+..- -.+++|.|..+|++....+++.+...++.++...+ .++-+ -+--.|+++|+..+.+++.+|...++.+
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 1111 25789999999999999999999999999885533 22222 2334577777777888888887777666
Q ss_pred ccCCCchH------------------------HHH-hc-C---CcHHHHHHHhhcCcccHHHHHHHHHHHhcC--hhhHH
Q 016465 256 SIYQGNKA------------------------RAV-RA-G---IVPPLMRFLKDAGGGMVDEALAILAILASH--QEGKT 304 (389)
Q Consensus 256 ~~~~~~~~------------------------~~~-~~-~---~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~ 304 (389)
+..-..+. .++ +. | ++|.|+.=-..++..++.-++++|.-+-.. .-++.
T Consensus 953 akaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd 1032 (1172)
T KOG0213|consen 953 AKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD 1032 (1172)
T ss_pred HHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh
Confidence 53211110 011 21 1 223333222335666777666666655432 11222
Q ss_pred HhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 305 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 305 ~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
.+. -+.+.|-.-|-+.+.--|.-|+.++.+++.+.
T Consensus 1033 Yiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1033 YIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 222 24455555555556666777777777777653
No 135
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00028 Score=67.37 Aligned_cols=264 Identities=18% Similarity=0.155 Sum_probs=156.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc-c
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-G 181 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~ 181 (389)
.-....+.+.+++.++.++..+...+.++-.. ..+.....|.++.|-+++.++++.+..+|+.+|..+....... .
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 45667788888899999999999988888753 3556778899999999999999999999999999987655432 2
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
.......+..++..+..-++-.+...+.++.+-...++ .+ ....+..+...|.+.+..+...+..++.++...-..
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e---a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE---AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh---HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 22233345556666655555555555555544433332 11 123456666666676777777777777666554333
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhh---------------------HHH----hhc-cC---C
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEG---------------------KTA----IGQ-AE---P 311 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~---------------------~~~----i~~-~~---~ 311 (389)
.........-++|+.++.... +++..|+.-+.-+... +.. +.+ +.. ++ .
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qv 351 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQV 351 (734)
T ss_pred HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHH
Confidence 333333445555666665544 4444444433333221 110 001 111 11 2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 312 IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 312 v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
+..+...-...+.+.-.++++++++++..-++. ++.++.|+++++....-+...+...++.+.
T Consensus 352 l~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dil 414 (734)
T KOG1061|consen 352 LAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDIL 414 (734)
T ss_pred HHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence 222333333346677788899998887643211 567777777777654444444444555443
No 136
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.4e-06 Score=71.36 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=40.1
Q ss_pred CCCCcCcCCcccC-cC------------CeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 9 PDDFRCPISLELM-KD------------PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~-~~------------pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.++-+|.||++.| .. |.-+||||.+.-.|+..|+++ ..+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 3578999999875 33 367899999999999999996 678999999843
No 137
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0037 Score=59.47 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=144.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
..+|.|++-|..+|+.++-.|+..+..|++.+|.+.-. .-|.|.++|... +--+....+..+++|+--++ .
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---R 252 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---R 252 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---h
Confidence 46899999999999999999999999999988876543 348888988664 45566777888888875432 2
Q ss_pred hcccCChHHHHHHHccCC-HHHHHHHHHHHHHh--cCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016465 183 IVNAGAIPDIVDVLKNGS-MEARENAAATLFSL--SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~-~~~~~~a~~~L~~L--s~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
++ ...+++|.+++.+.. ..+.+.++.++... +..-+.... ...-.+..|--++.+.|+..+.-++.++..+....
T Consensus 253 Lg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a-siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 253 LG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA-SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred hh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH-HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 22 236789999997754 34556666555433 222111111 11235677777888899999999999999887643
Q ss_pred CchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC-hHHHHHHHHHHHHHh
Q 016465 260 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAIC 338 (389)
Q Consensus 260 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~-~~~~~~a~~~L~~l~ 338 (389)
.. .+.. --+.++.+|.+.++.++..|+..|..+....... + .++.|+..+...+ ...|..-+.-+..+|
T Consensus 331 p~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~-e-----IVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 331 PK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLM-E-----IVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred HH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHH-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 32 2221 1256788999999999999999999887643222 1 3445555544333 345554444444455
Q ss_pred hc
Q 016465 339 TG 340 (389)
Q Consensus 339 ~~ 340 (389)
..
T Consensus 401 S~ 402 (877)
T KOG1059|consen 401 SQ 402 (877)
T ss_pred hh
Confidence 43
No 138
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.5e-06 Score=78.94 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=41.5
Q ss_pred CCCCcCcCCcccCcC-----CeecCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 9 PDDFRCPISLELMKD-----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~-----pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
..+-.|+||.+.|.. |..++|||.|+..|+.+|+++ ..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 346799999999988 778999999999999999997 67899999844
No 139
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0017 Score=64.29 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHh----cCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhcccCChHHH
Q 016465 118 VEEQRAAAGELRLLAKRNADNRVCIAE----AGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDI 192 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~----~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L 192 (389)
.+-...++.+|.++...+++....+.. .|.++.+..+|.. .++.++..|+.++..+..+.+.-..+++.|.+..|
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 345677899999998888865444432 3778888888865 57889999999999888888999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCC--ch--HHH--
Q 016465 193 VDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQG--NK--ARA-- 265 (389)
Q Consensus 193 ~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~--~~--~~~-- 265 (389)
+.+|.+ -+..+..++.+|..|+.+........+.|++..+.+++.. ..+..+..++..+..|..++- .+ ..+
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 999955 5678889999999999998887777888999888888764 467888889999999876532 11 111
Q ss_pred ------Hh--cCCcHHHHHHHhh--cCccc------HHHHHHHHHHHhc--------Ch-------h-------------
Q 016465 266 ------VR--AGIVPPLMRFLKD--AGGGM------VDEALAILAILAS--------HQ-------E------------- 301 (389)
Q Consensus 266 ------~~--~~~i~~L~~ll~~--~~~~~------~~~a~~~L~~l~~--------~~-------~------------- 301 (389)
++ .+.-+..+.++.. .++++ +...-..+..+.. ++ +
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 11 1222555566654 22222 2233333443332 00 0
Q ss_pred -----hHHHhhcc------------CChHHHHHHHhcCChH--HHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH
Q 016465 302 -----GKTAIGQA------------EPIPVLMEVIRTGSPR--NRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE 362 (389)
Q Consensus 302 -----~~~~i~~~------------~~v~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 362 (389)
.|..+.+. +.+..++.++...+++ .-.--..++..|....|.....+-..|.+++++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 01111111 2234444555443322 1222233334444555666666777899999999887
Q ss_pred hCChHHHHHHHHHHHHHHhh
Q 016465 363 SGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 363 ~~~~~~~~~a~~~L~~l~~~ 382 (389)
..+..+-..|..+|..|++.
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen 2077 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSEN 2077 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhc
Confidence 76655556777777777654
No 140
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.3e-06 Score=68.47 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=43.7
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
.-.|+||+..+.-||.++|+|-||.-||..-...+...|++||.++...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3469999999999999999999999999988877777899999998654
No 141
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.003 Score=58.48 Aligned_cols=271 Identities=13% Similarity=0.093 Sum_probs=165.9
Q ss_pred hHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcC--CHHHHHHHhcCC-ChHHHHHHHHHHHh-cccccc
Q 016465 104 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAG--AIPLLVELLSST-DPRTQEHAVTALLN-LSINDS 178 (389)
Q Consensus 104 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~lL~~~-~~~~~~~a~~~L~~-l~~~~~ 178 (389)
|.+..++...... ....+.+++.++++.+..... ...+...+ .+......++.+ +..+|-.|+.+|.+ +-.-..
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444433 245788899999998863322 22222222 233333344443 67788899998877 322111
Q ss_pred ccchhcc-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 179 NKGTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 179 ~~~~i~~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+-..-.+ .-+++...+.-+.++.+++..|..+|..+-.. -+.-....+.-......+.++++++++...+......+|
T Consensus 212 nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWstic 291 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTIC 291 (858)
T ss_pred hhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 1111011 12455666777788999999999999877432 233334455556666777888999999988888777776
Q ss_pred cCCCch-----------------HHHHhcCCcHHHHHHHhhc-------CcccHHHHHHHHHHHhcChhhHHHhhccCCh
Q 016465 257 IYQGNK-----------------ARAVRAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIGQAEPI 312 (389)
Q Consensus 257 ~~~~~~-----------------~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v 312 (389)
...-.. ....-..++|.|+++|... +-.+...|..+|.-.+..... ..+
T Consensus 292 eEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-------~i~ 364 (858)
T COG5215 292 EEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-------KIM 364 (858)
T ss_pred HHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-------HhH
Confidence 432111 0111234789999999762 234556666666655543211 133
Q ss_pred HHHHHH----HhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 313 PVLMEV----IRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 313 ~~L~~l----l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+++.+ +++.+..-++.|+.+++.+..+..+.+..-.-...++.+...+.+..-.++..++|++..++++
T Consensus 365 ~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 365 RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 334444 4556778899999999998776543333333345778888888888889999999999999765
No 142
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.82 E-value=0.00081 Score=52.30 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=97.5
Q ss_pred HHHHhhCcHHHHHHHhccCC------hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHHHHHH
Q 016465 222 VAIGAAGAIPALIRLLCDGT------PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAIL 293 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L 293 (389)
..+.+.+++..|++++.++. .++...++.++..|...+-.-....+..+|..++..+.. .+..+...++.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677899999999998765 367777888999988876655667778888899888876 3688999999999
Q ss_pred HHHhcChhhHHHhh-ccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 294 AILASHQEGKTAIG-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 294 ~~l~~~~~~~~~i~-~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
.++..+++..-..+ ++=-++.|+..|+..+++++.+|+..+-.|-...
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99998777754444 4556999999999999999999999888876543
No 143
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00033 Score=66.88 Aligned_cols=252 Identities=15% Similarity=0.093 Sum_probs=158.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.+..+.+++.....|.+.+.-.-..+.+.+...+.. ..+++..+++=..++++.+|..|++.++.+-.+ .
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~ 117 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----K 117 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----H
Confidence 456778888888888777777777777777654432 235677788777888999999999988765321 1
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~ 262 (389)
+. ..+..++.+.++++++.++..++....++-. .........|.++.|-+++.+.++.+..+|+.+|..+.....+.
T Consensus 118 i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 118 IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 22 2357889999999999999999988888743 33445556799999999999999999999999999998755431
Q ss_pred -HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 263 -ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 263 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
........+..++..+....+.-+-..+..+.+-.-.++ +.. ...+..+...+++.+..+...+..++.++...-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 111122334444444544344444444444433332222 111 124556666667777777777777777766644
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Q 016465 342 AEQLKIARELDAEEALKELSESGTDRAKRKAG 373 (389)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~ 373 (389)
+. .....-...-+.|+.++.... +++--|.
T Consensus 271 ~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaL 300 (734)
T KOG1061|consen 271 KQ-VNELLFKKVAPPLVTLLSSES-EIQYVAL 300 (734)
T ss_pred HH-HHHHHHHHhcccceeeecccc-hhhHHHH
Confidence 33 222222234444444444443 4444333
No 144
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.00088 Score=66.02 Aligned_cols=219 Identities=14% Similarity=0.082 Sum_probs=157.0
Q ss_pred HHHHHHHHHhccc-cccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHH-hcCCchhhHHHHhhCcHHHHHHHhcc-
Q 016465 163 QEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGAAGAIPALIRLLCD- 239 (389)
Q Consensus 163 ~~~a~~~L~~l~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~~~~~~~i~~L~~ll~~- 239 (389)
|..|+..|..+.. .+-.-..-..-|++|-++++|+++-.+++...+.+=.. |+.++..+..+++.++-..+++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3445555554322 11122233357999999999999988887654443333 56677788888888888888888876
Q ss_pred C--ChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHHHHhhc-CcccHHHHHHHHHHHhc-ChhhHHHhhccCChHH
Q 016465 240 G--TPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILAS-HQEGKTAIGQAEPIPV 314 (389)
Q Consensus 240 ~--~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~ 314 (389)
+ +++-+..|+-+|..++.+-. ++....+.+.+...++.|.++ .+-++..++-+|+.|=. ++..|-.-.+.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 3 35777888888999987644 566677888899888889874 57778889999988864 4566666677889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcC----HHHHHHH------------HhcCcH---HHHHHHHHhCChHHHHHHHHH
Q 016465 315 LMEVIRTGSPRNRENAAAVLWAICTGD----AEQLKIA------------RELDAE---EALKELSESGTDRAKRKAGSI 375 (389)
Q Consensus 315 L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~------------~~~~~~---~~L~~ll~~~~~~~~~~a~~~ 375 (389)
|..+|.+..+++|.+|+.+|..+..+. ++....+ .+.-+. ..++.+++++++-++...+..
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999999999999987742 2221111 122222 366678889999999998888
Q ss_pred HHHHHh
Q 016465 376 LELLQR 381 (389)
Q Consensus 376 L~~l~~ 381 (389)
|..+..
T Consensus 727 ls~~~~ 732 (1387)
T KOG1517|consen 727 LSHFVV 732 (1387)
T ss_pred HHHHHH
Confidence 887643
No 145
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.72 E-value=4.2e-05 Score=52.02 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=32.4
Q ss_pred cCcCCcccCcC-Cee-cCCccCccHHHHHHHHhc--CCCCCCCCCccCc
Q 016465 13 RCPISLELMKD-PVI-VSTGQTYERSCIQKWLDA--GHKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~~-pv~-~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~ 57 (389)
.||.|.-.-.+ |+. -.|+|.|...||.+|+.. +...||.||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34444443333 544 469999999999999985 3468999998753
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.01 Score=56.53 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=141.1
Q ss_pred HhhcCCC--HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc--cccchhccc
Q 016465 111 GKLANGN--VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND--SNKGTIVNA 186 (389)
Q Consensus 111 ~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~ 186 (389)
++|.|++ .-++..|+-+|..|-+.+++. +...+....++.+|.+.+..+.-.+...+..|+... +++..+..
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~- 228 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL- 228 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-
Confidence 4444443 335666666666666554432 222245667777777766666666666666665522 22222211
Q ss_pred CChHHHHHHHcc-------------CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC--ChhhHH----H
Q 016465 187 GAIPDIVDVLKN-------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRGKK----D 247 (389)
Q Consensus 187 g~l~~L~~lL~~-------------~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~----~ 247 (389)
++..|.++... +.|-++..++++|.++-..++......-...+..++...+.. +.+++. +
T Consensus 229 -avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 229 -AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred -HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 12222222211 245566667777776633333222222123444444444321 112221 1
Q ss_pred -HHHHHHHhccC-CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh-cCCh
Q 016465 248 -AATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSP 324 (389)
Q Consensus 248 -a~~~L~~L~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~-~~~~ 324 (389)
.+--..+|+.. +.....+. ..+..|-++|.+.+.+++..|+..+..|++.......+..+ ...++..|+ ..+.
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence 11111223222 22222222 24567788888889999999999999999887777766655 778888888 5678
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 325 RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 325 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
.+|..|+..|+.+|-.+ +.+. ++.-|++.+.+.+..+|+...-=+..|
T Consensus 384 SirrravDLLY~mcD~~--Nak~-----IV~elLqYL~tAd~sireeivlKvAIL 431 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVS--NAKQ-----IVAELLQYLETADYSIREEIVLKVAIL 431 (938)
T ss_pred HHHHHHHHHHHHHhchh--hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 89999999999998754 3332 455677777777777777654333333
No 147
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.71 E-value=0.0059 Score=59.90 Aligned_cols=216 Identities=17% Similarity=0.196 Sum_probs=136.9
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
..+.-..+++.+++++.+++..|..+|++++.++-+ ..+|.+++.+.+. +.-++--+..|.........-
T Consensus 855 ~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd- 924 (1233)
T KOG1824|consen 855 QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVD- 924 (1233)
T ss_pred chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccc-
Confidence 345556677888888888888888888888875432 3567777766553 333344444443321110000
Q ss_pred hhcccCChHHHHHHHc----cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 182 TIVNAGAIPDIVDVLK----NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
.-...++.+..+|. ...+..|.-.+.+|+.|+..++. ..++.|-..+.++.+..+..+..++.....
T Consensus 925 --~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 925 --GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred --hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------HHHHHHHHHhcCCCcchhhhhhheeeeeec
Confidence 11123444444443 33445677778888888765432 356788888888888888888888876665
Q ss_pred CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC---------------
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--------------- 322 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--------------- 322 (389)
.............+...+.++++++.+++..|+.++...+.+.+..-. +.++.|+..+-+.
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr----DllpeLLp~Ly~eTkvrkelIreVeMGP 1071 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR----DLLPELLPLLYSETKVRKELIREVEMGP 1071 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH----HHHHHHHHHHHHhhhhhHhhhhhhcccC
Confidence 555444445555678889999999999999999999988876554221 2444444444221
Q ss_pred -------ChHHHHHHHHHHHHHhhc
Q 016465 323 -------SPRNRENAAAVLWAICTG 340 (389)
Q Consensus 323 -------~~~~~~~a~~~L~~l~~~ 340 (389)
.-++|..|..++..|...
T Consensus 1072 FKH~VDdgLd~RKaaFEcmytLLds 1096 (1233)
T KOG1824|consen 1072 FKHTVDDGLDLRKAAFECMYTLLDS 1096 (1233)
T ss_pred ccccccchHHHHHHHHHHHHHHHHh
Confidence 235688888888877654
No 148
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0037 Score=59.28 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=150.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccccccch
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.+..+.+-|.+.|+-...-|+.++.++.. .+.++.+. +-+-++|.++ ..-++..|+-+|..|-... -+.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDL 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccc
Confidence 34444555567777778888888888753 34444443 2233666554 3446667766666665432 222
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-------------ChhhHHHHH
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------------TPRGKKDAA 249 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~ 249 (389)
+-..+..+.++.+|++.+..+...+...+..|+...+..-...-..++..|..+.... .+=.....+
T Consensus 183 ~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 2234578889999988877676667777777765433211111122333444433221 233445555
Q ss_pred HHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCccc-----HHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC
Q 016465 250 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGM-----VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 250 ~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~-----~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
++|.+.-..++.-....-..+++.++...+. ...++ +..++.-.-+++.+-+....+.. .++..|-+++.+.
T Consensus 263 rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~r 341 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHR 341 (938)
T ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcc
Confidence 6665552222111111112223333333332 11222 23334333445543333223322 3788899999999
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhhHh
Q 016465 323 SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 323 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
...+|.-|+..+..|+.... ... .++.. .+.++..++ ..|..+|++|..+|..|++..+
T Consensus 342 E~NiRYLaLEsm~~L~ss~~-s~d-avK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 342 ETNIRYLALESMCKLASSEF-SID-AVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred cccchhhhHHHHHHHHhccc-hHH-HHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 99999999999999988632 223 33333 677777888 5589999999999999987654
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.65 E-value=0.00015 Score=46.16 Aligned_cols=55 Identities=31% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016465 201 MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 201 ~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
+.++..|+++|++++........-....+++.|+.+|.+++..++..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887765555556678999999999999999999999999875
No 150
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.64 E-value=2.2e-05 Score=70.92 Aligned_cols=50 Identities=20% Similarity=0.451 Sum_probs=43.1
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc----CCCCCCCCCccCcCC
Q 016465 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLHT 59 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~----~~~~cp~c~~~~~~~ 59 (389)
.+..|.+|++...||+...|-|+|||-||.+|... .+.+||+|..+++.+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34689999999999999999999999999888863 346899999888655
No 151
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.9e-05 Score=65.10 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.5
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.|.|-||.+.+.+||...|||+||..|-..-+.. ...|++|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 4889999999999999999999999999888775 456999988764
No 152
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.63 E-value=0.0044 Score=53.30 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=145.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhhHHHH-hcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccccccchhcc-cCChH
Q 016465 115 NGNVEEQRAAAGELRLLAKRNADNRVCIA-EAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGTIVN-AGAIP 190 (389)
Q Consensus 115 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~l~ 190 (389)
+-++-.+.-|+.++.++.. .++.|..+- +...-..+++++++. ...++.+.+-+++.++.+++..+.+-+ ...+.
T Consensus 160 ~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3345567888889988886 456665443 444667788888774 678999999999999887766533332 34566
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhccC---ChhhHHHHHHH-------------
Q 016465 191 DIVDVLKNG-SMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATA------------- 251 (389)
Q Consensus 191 ~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~------------- 251 (389)
.|+++.+.. .+.+.+.++.++.|+.... +....+.-.|-+...++.|... |++++...-..
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 677777654 4667788999999987632 2233333345556666666432 33332221110
Q ss_pred ----HHHh-----ccCC---------CchHHHHhc--CCcHHHHHHHhhcCcc-cHHHHHHHHHHHh-cChhhHHHhhcc
Q 016465 252 ----IFNL-----SIYQ---------GNKARAVRA--GIVPPLMRFLKDAGGG-MVDEALAILAILA-SHQEGKTAIGQA 309 (389)
Q Consensus 252 ----L~~L-----~~~~---------~~~~~~~~~--~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~-~~~~~~~~i~~~ 309 (389)
+..| +-.+ .|...+.+. .++..|.++++...+. ....|+.=+..+. ..|+.+..+.+.
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 1111 1111 123444443 4678899999886665 4445555555555 678889999999
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
|+=..+++++.+++++++.+|+.++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 153
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.61 E-value=2.1e-05 Score=61.58 Aligned_cols=45 Identities=18% Similarity=0.396 Sum_probs=39.4
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
|.|-||..-+..||.+.|||.||..|..+-... ...|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 899999999999999999999999998877765 456999987654
No 154
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.023 Score=54.84 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcc
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
-..|.++|.+.....+.+|.+-|..+...+.+. +..+|..++-..+.+.++++..---|...+...++-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 355778888777777777777665554333331 234567777777777777766555454444333222211
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
-|..+-+-|+++++.+|..|+++|..+- ..+...=.+-.+-+...+..+.+|..|+-||-.|=
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh
Confidence 1455566667777777766666665441 11111111122223334445566666666655553
No 155
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0054 Score=51.39 Aligned_cols=195 Identities=25% Similarity=0.288 Sum_probs=120.3
Q ss_pred cCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH
Q 016465 145 AGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 222 (389)
Q Consensus 145 ~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 222 (389)
...++.|+..|... .+-+|..|..+|+++. ....++.+-+..+++..++++.+..++..+-..+....
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 34788888888764 5667888888887654 34456666666666777777777777766532111000
Q ss_pred ------HH-------HhhCcHHHHHHHhccCC-hhh-HHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHH
Q 016465 223 ------AI-------GAAGAIPALIRLLCDGT-PRG-KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVD 287 (389)
Q Consensus 223 ------~~-------~~~~~i~~L~~ll~~~~-~~~-~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 287 (389)
.. ...+-+..+-..|.+.+ +.. +..++-.|.|+-. ...|..+++-+..++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 00 01122444444443332 222 2233333333311 11244555555556666778
Q ss_pred HHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCC
Q 016465 288 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT 365 (389)
Q Consensus 288 ~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 365 (389)
.+..+++.|-+- -.++.|.+.|... ++.+|..|+.+|+.++... .++.|.+++.+.+
T Consensus 206 EvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcH
Confidence 888888866543 3788888888654 6889999999999877632 5677888888888
Q ss_pred hHHHHHHHHHHHHHH
Q 016465 366 DRAKRKAGSILELLQ 380 (389)
Q Consensus 366 ~~~~~~a~~~L~~l~ 380 (389)
+-+++.+..+|..+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877653
No 156
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00041 Score=65.01 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=125.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-----hhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc---
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--- 176 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~--- 176 (389)
.....++.++.++.+++..|++.+.-.+.-.+ +.-+.-....++..+.+.+.+.+..+|..|+.+|+.+-.-
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 45667788888888899999887776554331 1111111224566777777776666666666666544110
Q ss_pred ------------------------------------------------ccccchhcccCChHHHHHHHccCCHHHHHHHH
Q 016465 177 ------------------------------------------------DSNKGTIVNAGAIPDIVDVLKNGSMEARENAA 208 (389)
Q Consensus 177 ------------------------------------------------~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~ 208 (389)
++.-..++..|+-.+++.-|.+.-.+++..|+
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 01112244566677788888887789999999
Q ss_pred HHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHH
Q 016465 209 ATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDE 288 (389)
Q Consensus 209 ~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 288 (389)
..++.|+.+.+.- ....+..|+++++++...++..|..+|..++.+-. +++..++.+.+.|.+.+.++++.
T Consensus 395 ~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 395 ASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998765431 13467899999999999999999999999876522 34445677888888888888887
Q ss_pred HHHHHHHHh
Q 016465 289 ALAILAILA 297 (389)
Q Consensus 289 a~~~L~~l~ 297 (389)
.-.+|.+.-
T Consensus 466 l~elL~~~~ 474 (823)
T KOG2259|consen 466 LRELLKNAR 474 (823)
T ss_pred HHHHHHhcC
Confidence 766666543
No 157
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.59 E-value=0.00019 Score=42.44 Aligned_cols=38 Identities=42% Similarity=0.605 Sum_probs=35.4
Q ss_pred hhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 016465 137 DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 174 (389)
Q Consensus 137 ~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~ 174 (389)
+++..+.+.|+++.|++++.+++.+++..++++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47788999999999999999999999999999999986
No 158
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0078 Score=50.49 Aligned_cols=199 Identities=20% Similarity=0.187 Sum_probs=136.0
Q ss_pred ccchhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc-
Q 016465 100 DCDRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN- 176 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~- 176 (389)
..+..+++.++..|... .+-++.+|..+|..+.. . +.++.+-++.+++...+++..-.++..+-..
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 45678899999999854 46688899999998873 2 3567777777666667777655555554210
Q ss_pred ---c-----cccc----hhcccCChHHHHHHHccCCH--HHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCCh
Q 016465 177 ---D-----SNKG----TIVNAGAIPDIVDVLKNGSM--EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP 242 (389)
Q Consensus 177 ---~-----~~~~----~i~~~g~l~~L~~lL~~~~~--~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~ 242 (389)
. ++-. .-...+-+..+-..|.+.+. --++.|+..|.|+.. ...|..|++-+..++.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSA 201 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchH
Confidence 0 0000 00112235555555554432 235566666666532 3456778888888888
Q ss_pred hhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh
Q 016465 243 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR 320 (389)
Q Consensus 243 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~ 320 (389)
-.+..++.+++.| ...-.|+.|.+.|.+ .++-++..|+.+|+.++.. .++..|.+++.
T Consensus 202 lfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~ 261 (289)
T KOG0567|consen 202 LFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLG 261 (289)
T ss_pred HHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcC
Confidence 8899999999876 445578899998877 6778999999999988765 37888888888
Q ss_pred cCChHHHHHHHHHHHHHhh
Q 016465 321 TGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 321 ~~~~~~~~~a~~~L~~l~~ 339 (389)
...+-+++.+..+|..+-.
T Consensus 262 D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 262 DEERVVRESCEVALDMLEY 280 (289)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 8888888887777765544
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.55 E-value=4.8e-05 Score=67.56 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=42.3
Q ss_pred CCCCCCCCCcCcCCcccCcCCe----ecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 4 RSPVIPDDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 4 ~~~~~~~~~~Cpic~~~~~~pv----~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
++..+.+-.+||+|++=|.+-+ ++.|.|+|--.|+..|+. .+||+||...+
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 4455777789999999998776 357999999999999964 57999997665
No 160
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.54 E-value=0.0072 Score=53.97 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=163.6
Q ss_pred HHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-ccc-----chhcc--cCChHHHHHHHccCCHHHHHHHHHHHH
Q 016465 141 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNK-----GTIVN--AGAIPDIVDVLKNGSMEARENAAATLF 212 (389)
Q Consensus 141 ~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~-----~~i~~--~g~l~~L~~lL~~~~~~~~~~a~~~L~ 212 (389)
.+...+.+..|+..|..-+.+.|..+..+..++.... ..+ +.+.. ..++..|+..-. ++++...+...|.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence 4556688999999999989999999999999886543 222 22322 223333333333 5667778888999
Q ss_pred HhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCchHHHHhc---CCcHHHHHHHhhcCcccHHH
Q 016465 213 SLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRA---GIVPPLMRFLKDAGGGMVDE 288 (389)
Q Consensus 213 ~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~ 288 (389)
.....+.....+.....+..+.+.+..++-++...|..++..+-. +......+... ..+.....+|.+++.-++..
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 998888877788888888899999999999999999999998544 44444555554 35677888888888889999
Q ss_pred HHHHHHHHhcChhhHHHh----hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC---HHHHHHHHhcCcHHHHHHHH
Q 016465 289 ALAILAILASHQEGKTAI----GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD---AEQLKIARELDAEEALKELS 361 (389)
Q Consensus 289 a~~~L~~l~~~~~~~~~i----~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~ll 361 (389)
++..|+.|-.+..+...+ .+..-+..++.+|++.+..++..|..+.--+..++ +.....+..+ =+.|+.++
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~fl 306 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHHH
Confidence 999999999888875543 33557899999999999999999999998888764 3444544444 23455555
Q ss_pred H----hC--ChHHHHHHHHHHHHHH
Q 016465 362 E----SG--TDRAKRKAGSILELLQ 380 (389)
Q Consensus 362 ~----~~--~~~~~~~a~~~L~~l~ 380 (389)
. +. |+.....=..+++.|.
T Consensus 307 ~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 307 KDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp HTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred HhCCCCCCccccHHHHHHHHHHHHH
Confidence 3 22 4444444445555554
No 161
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.53 E-value=0.038 Score=45.93 Aligned_cols=232 Identities=11% Similarity=0.108 Sum_probs=148.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcC------------CChHHHHHHHHHHHh
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS------------TDPRTQEHAVTALLN 172 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~------------~~~~~~~~a~~~L~~ 172 (389)
+..++-.+.++ +.++.|+..|..--+..++-...+-.+ |.+..|++=+-. ....-..+|+..|--
T Consensus 28 ~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 28 AYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred hhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 55555555443 457777776666544333333333333 444444432211 122234567777777
Q ss_pred ccccccccchhcccCChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCch--hhHHHHhhCcHHHHHHHhccCChhhH
Q 016465 173 LSINDSNKGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRGK 245 (389)
Q Consensus 173 l~~~~~~~~~i~~~g~l~~L~~lL~~-----~~~~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~L~~ll~~~~~~~~ 245 (389)
++++++.|..+.+..+---|-.+|.. +.+.+|..++++++.|..+++ ....+...++++..++.+..+++..+
T Consensus 106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSK 185 (293)
T KOG3036|consen 106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSK 185 (293)
T ss_pred HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHH
Confidence 89999999999876644445555543 346789999999999987754 45566778999999999999998888
Q ss_pred HHHHHHHHHhccCCCchHHHHhc--------CCcHHH-HHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc---cCChH
Q 016465 246 KDAATAIFNLSIYQGNKARAVRA--------GIVPPL-MRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ---AEPIP 313 (389)
Q Consensus 246 ~~a~~~L~~L~~~~~~~~~~~~~--------~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~---~~~v~ 313 (389)
.-|..++..+..++.+-..+... ..+..+ ..+...++..+...++.+..+|+.++..|..+.. .+.-.
T Consensus 186 tvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd 265 (293)
T KOG3036|consen 186 TVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRD 265 (293)
T ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhcc
Confidence 88998998888877765444321 122232 2333447788889999999999999998887653 12222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 314 VLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.-...+-.+++..+.+-...+.|++.
T Consensus 266 ~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 266 GTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred chHHHHHhcChhHHHHHHHHHHHhcc
Confidence 22233333455566666666666553
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.51 E-value=0.00012 Score=46.58 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016465 160 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 160 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
+.+|..|+++|++++........-....+++.|+.+|+++++.++..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999886554433334466899999999999999999999999875
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.50 E-value=0.00094 Score=47.90 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHh--cCChHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q 016465 285 MVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIR--TGSPRNRENAAAVLWAICTGDAEQLKIAREL 351 (389)
Q Consensus 285 ~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 351 (389)
.+...+.+|+|++ .++..+..+.+.|+++.++..-. ..+|.++++|++++.||+.++++++..+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4667889999999 46778999999999999999864 4579999999999999999999888877654
No 164
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.46 E-value=0.0086 Score=49.62 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-----CChHHHHHHHHHHHhccccc--cccchhcccCChHHH
Q 016465 120 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----TDPRTQEHAVTALLNLSIND--SNKGTIVNAGAIPDI 192 (389)
Q Consensus 120 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~l~~L 192 (389)
-...|+..|.-++. .++-|..+.+..+--.|..+|.. +.+-+|-.++++|+.|.+.+ +.-..+...+++|..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 35667777777776 57888889988877777777754 25678999999999998754 445556678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh--------CcH-HHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016465 193 VDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--------GAI-PALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 193 ~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~--------~~i-~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
++.+..+++..+..|..++..+-.++..-..+.+. -.+ +.+.++.+.++....+.++++..+|+.++..+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999988777654444332 122 234455566788999999999999998887665
Q ss_pred HHHh--c-CCcHHHHHHHhhcCcccHHHHHHHHHHHh
Q 016465 264 RAVR--A-GIVPPLMRFLKDAGGGMVDEALAILAILA 297 (389)
Q Consensus 264 ~~~~--~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 297 (389)
.+.. . +.-+.-...+-..+...+..--..+.|++
T Consensus 254 aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 254 ALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 5443 1 11122222222234444544444555544
No 165
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.025 Score=57.11 Aligned_cols=218 Identities=16% Similarity=0.149 Sum_probs=131.1
Q ss_pred CCChHHHHHHHHHHHhccccccccchhcc--cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHHHhhCcHHH
Q 016465 157 STDPRTQEHAVTALLNLSINDSNKGTIVN--AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAAGAIPA 232 (389)
Q Consensus 157 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~ 232 (389)
+.+..+|..+..+|..++..++....... ..+...|.+-+++-+...+...+.+|..|-...+ ... +. ...|+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~-~i-~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD-LI-PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH-HH-HHHHHH
Confidence 34788999999999998776333222221 1123334444444455566666666665543322 211 11 233444
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcC------CcHHHHHHHhhc--CcccHHHHH--HHHHHHhcChhh
Q 016465 233 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAG------IVPPLMRFLKDA--GGGMVDEAL--AILAILASHQEG 302 (389)
Q Consensus 233 L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~------~i~~L~~ll~~~--~~~~~~~a~--~~L~~l~~~~~~ 302 (389)
++-.+++.+...+..+..+|..++. .....+.| .+...+..+... .+.....+. -++..+.. .
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 4444477888999999999988873 11222222 344444444432 222222222 22222222 1
Q ss_pred HHHhhc----cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Q 016465 303 KTAIGQ----AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILEL 378 (389)
Q Consensus 303 ~~~i~~----~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 378 (389)
...+++ .+.+..+..+|.+.++++...|+..+..++...|+..-.-...-+++.+..+.++....+|.+...+|..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 122222 2456667777788899999999999999998876665555555588899999999899999999999998
Q ss_pred HHhhH
Q 016465 379 LQRID 383 (389)
Q Consensus 379 l~~~~ 383 (389)
|.+-.
T Consensus 896 Lirkf 900 (1176)
T KOG1248|consen 896 LIRKF 900 (1176)
T ss_pred HHHHh
Confidence 86543
No 166
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.024 Score=55.50 Aligned_cols=142 Identities=20% Similarity=0.207 Sum_probs=110.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
...+.+++...+.|.+++.-.-..|...+...++ ..+. +++.+.+=++++++.+|..|++.+..+-. ..+
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~-----~el 124 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV-----KEL 124 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh-----HHH
Confidence 3567777877788888888777788888775552 2222 57888899999999999999999977621 112
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016465 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
-..+++++.+++.++++.+|..|+-++.++-..+ .....+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus 125 -~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 -LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2347889999999999999999999999985333 33445568888999999999999999999999988654
No 167
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.41 E-value=0.0015 Score=53.22 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=89.7
Q ss_pred cCChhhHHHHHHHHHHhccCCCchHHHHhc----------------CCcHHHHHHHhh------cCcccHHHHHHHHHHH
Q 016465 239 DGTPRGKKDAATAIFNLSIYQGNKARAVRA----------------GIVPPLMRFLKD------AGGGMVDEALAILAIL 296 (389)
Q Consensus 239 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~----------------~~i~~L~~ll~~------~~~~~~~~a~~~L~~l 296 (389)
+.+......++.+|.||+..++....+.+. ..+..|++++.. ....-..+...++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456677888999999888877655432 256778887765 3355678899999999
Q ss_pred hcChhhHHHhhcc--CC--hHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh--cCcHHHHHHHHH
Q 016465 297 ASHQEGKTAIGQA--EP--IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE--LDAEEALKELSE 362 (389)
Q Consensus 297 ~~~~~~~~~i~~~--~~--v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~ 362 (389)
+..+++|..+.+. +. +..|+.++.+.+..-|.-++.+|.|+|.........+.+ -++++.|+--+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999999873 34 778888888887777888999999999976544433332 256665554443
No 168
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.39 E-value=5.9e-05 Score=66.48 Aligned_cols=37 Identities=16% Similarity=0.609 Sum_probs=33.4
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc
Q 016465 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA 44 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~ 44 (389)
++++++||+|..++++|++++|+|..|+.|-...+.+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 4689999999999999999999999999999876653
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=0.012 Score=56.92 Aligned_cols=243 Identities=15% Similarity=0.107 Sum_probs=166.5
Q ss_pred ChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHh-ccccccccchhcccCChHHHHHHHccCC-HHHHHHHHHHHH
Q 016465 135 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLF 212 (389)
Q Consensus 135 ~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~l~~L~~lL~~~~-~~~~~~a~~~L~ 212 (389)
...-+...++.|+...|+.+.....+..+..+..+|.. +... ... ....++.+...+.+.. ..-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~~~---~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--GER---SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--CCc---hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 33445567788999999999988777777777777761 1111 000 1224555555554332 223467888999
Q ss_pred HhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHH-h-cCCcHHHHHHHhhcCcccHHHH
Q 016465 213 SLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV-R-AGIVPPLMRFLKDAGGGMVDEA 289 (389)
Q Consensus 213 ~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~-~~~i~~L~~ll~~~~~~~~~~a 289 (389)
||+..+ ..+..+.+.-+++.+-.++..+++..+..++..+.||...+......+ + ...++.....+..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 998765 455667777777777777888899999999999999998877554443 4 4567777777766666666666
Q ss_pred HHHHHHHhcChhh-HH-HhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChH
Q 016465 290 LAILAILASHQEG-KT-AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDR 367 (389)
Q Consensus 290 ~~~L~~l~~~~~~-~~-~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 367 (389)
+.++..+.....+ .. ..........+..++.+.++.++...+....|+.....+....+.....+..+..+-.-.-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 6666655544333 22 222246788899999999999999999999997776677777777777777777666555566
Q ss_pred HHHHHHHHHHHHHhh
Q 016465 368 AKRKAGSILELLQRI 382 (389)
Q Consensus 368 ~~~~a~~~L~~l~~~ 382 (389)
.++.+...|...-++
T Consensus 728 ~~~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 728 KREDAAPCLSAAEEY 742 (748)
T ss_pred hhhhhhhHHHHHHHh
Confidence 677777666655443
No 170
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.35 E-value=0.00051 Score=40.52 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=35.3
Q ss_pred hhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 301 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 301 ~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
+++..+.+.|+++.|++++++.+++++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999998899999999999999873
No 171
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.33 E-value=0.0077 Score=46.94 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=96.7
Q ss_pred HHHHhcCCcHHHHHHHhhcCc------ccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC--ChHHHHHHHHHH
Q 016465 263 ARAVRAGIVPPLMRFLKDAGG------GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVL 334 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~------~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~~a~~~L 334 (389)
..++..+|+..|++++.++.. +....++.++..|..+...-=...+..++..++.++... +..+...|..+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 568889999999999988553 666778888888887655333455666889999998765 478889999999
Q ss_pred HHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 335 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
-+++.+++.....+.+.=-++.|+..++..+++++..|..++-.|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988887777888878999999999999999999988887763
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.32 E-value=0.014 Score=58.98 Aligned_cols=251 Identities=18% Similarity=0.151 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc---c-cccchhcccCChHHHH
Q 016465 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN---D-SNKGTIVNAGAIPDIV 193 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~---~-~~~~~i~~~g~l~~L~ 193 (389)
.+.+..|+..|..++.--.+ ...=..++|.++.++.+...++|..|+.+|..+... - ..-..+.-.-++|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 46788999999998853211 111224789999999999999999999999886431 1 2222334455788888
Q ss_pred HHHccCC-HHHHHHHHHHHHHhcC------------------CchhhH---------HH--HhhCcHHHHHHHhccCChh
Q 016465 194 DVLKNGS-MEARENAAATLFSLSV------------------IDENKV---------AI--GAAGAIPALIRLLCDGTPR 243 (389)
Q Consensus 194 ~lL~~~~-~~~~~~a~~~L~~Ls~------------------~~~~~~---------~~--~~~~~i~~L~~ll~~~~~~ 243 (389)
.++.+.+ ..++..-+..|..|+. ++++-+ .. ...++-.....+|.++++-
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~ 593 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPI 593 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchH
Confidence 8887733 3344333333333321 111100 00 0012233344455555556
Q ss_pred hHHHHHHHHHHhccCCCchHHHHhc----CCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHH
Q 016465 244 GKKDAATAIFNLSIYQGNKARAVRA----GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 319 (389)
Q Consensus 244 ~~~~a~~~L~~L~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll 319 (389)
++..-+..|.-||. .+.+. =+++.|+..|.+.+..++..-...|.-++..-.-| =+++..++.|.+-|
T Consensus 594 Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 594 VKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGL 665 (1431)
T ss_pred HHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhc
Confidence 66666677777663 22222 24678888888877766665555555444322111 12335678888888
Q ss_pred hcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 320 RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 320 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+..+.+-..|+.+|..|+...- .+...-..+++...-++-+++.-+|+.+..++..+.+
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 88889999999999999888642 2222222355556667788899999999988877754
No 173
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.041 Score=53.18 Aligned_cols=263 Identities=18% Similarity=0.129 Sum_probs=132.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch-
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT- 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~- 182 (389)
...+.+-..|.+.+..+..+|++++..+...+... +. ..+..|--++.+....+|-.|.++|..++..-+..-.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 44555556666667777888888887776533221 11 1566666677777778888888888877653222111
Q ss_pred --------hccc---CChHHHHHHHccCCHHHHHH----HHHHHHHhcCCch------hhHH-----HHhhCcHHHHHHH
Q 016465 183 --------IVNA---GAIPDIVDVLKNGSMEAREN----AAATLFSLSVIDE------NKVA-----IGAAGAIPALIRL 236 (389)
Q Consensus 183 --------i~~~---g~l~~L~~lL~~~~~~~~~~----a~~~L~~Ls~~~~------~~~~-----~~~~~~i~~L~~l 236 (389)
+-+. =...++..+|+.+.+.-... ......+++.... .+.. ....+.+.-|.++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1111 12234445555544332222 2222333321110 0000 0001233333333
Q ss_pred hccC-ChhhHHHHHHHHHHhcc-CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHH
Q 016465 237 LCDG-TPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPV 314 (389)
Q Consensus 237 l~~~-~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~ 314 (389)
|+++ ..+.+.....++..+.. +++. +..++..|.+.+.+ -+...-+..+|.-|....+. ...-..-+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pds-----Ke~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~--a~~Pskyir~ 470 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDS-----KERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPK--APNPSKYIRF 470 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCC--CCCcchhhHH
Confidence 3321 22333333333333322 1111 11223333333332 22233344444433321110 0011234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 315 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 315 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
+.+.+.-.+..+|..|+.+|.++..+++.. ...+...|.+.+.+.|.++|.+|...|..+.+-+..
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~ 536 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDV 536 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhh
Confidence 566666677888999999999998655322 234667788899999999999999999999855444
No 174
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0002 Score=61.13 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=42.4
Q ss_pred CCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 7 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
..++.-.||+|.+--.+|..+. .|..||-.||..+..+ ..+||+++.+..
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 4566678999999999998765 7999999999999994 678999987764
No 175
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.30 E-value=0.0024 Score=53.75 Aligned_cols=219 Identities=15% Similarity=0.121 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHhc-CCHHHHHHHhcC-------C--Ch---HHHHHHHHHHHhccccccccchh
Q 016465 117 NVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS-------T--DP---RTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~L~~lL~~-------~--~~---~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
+++.++.|+..|..--...++-.-.+-.+ |.+..|++=+-+ + .. .-...|+..|--++++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778888877766543333333233333 666666653322 1 11 22345666666689999999999
Q ss_pred cccCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCc--hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 184 VNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~-----~~~~~~~a~~~L~~Ls~~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
.+..+.--|..+|+.. -+.++..++++++.|...+ +....+...+.+|..++.+..+++-.+.-|.-.+..+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9887766677777543 2568899999999998754 45566778899999999999998888888888888887
Q ss_pred cCCCchHHHHh--------cCCcHHHHHH-HhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHH-----HHHHHhcC
Q 016465 257 IYQGNKARAVR--------AGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPV-----LMEVIRTG 322 (389)
Q Consensus 257 ~~~~~~~~~~~--------~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~-----L~~ll~~~ 322 (389)
.++.+...+.. ..++..++.- ..++++.+...++.+-..|+.++..+..+.. .++. .+.-+-.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l~~ 245 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNILKD 245 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGGCS
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHHhc
Confidence 76655433332 1233333333 3447888899999999999999998887653 1111 11111223
Q ss_pred ChHHHHHHHHHHHHH
Q 016465 323 SPRNRENAAAVLWAI 337 (389)
Q Consensus 323 ~~~~~~~a~~~L~~l 337 (389)
++.++..-...+.|+
T Consensus 246 D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 246 DPSTKRWLQQLLSNL 260 (262)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 555666655555554
No 176
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.0066 Score=58.56 Aligned_cols=201 Identities=13% Similarity=0.097 Sum_probs=147.3
Q ss_pred cccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHH-HhcCCchhhHHHHhhCcHHHHHHHhccCC-hhhHHHHHHH
Q 016465 174 SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLF-SLSVIDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATA 251 (389)
Q Consensus 174 ~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~ 251 (389)
+.....+...+..|+...|+++.....+..+..+..+|. .+...... ....++.+.+.+.... ..-...++.+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 335556777788999999999999988888888888887 32221110 1245556666654432 2234568889
Q ss_pred HHHhccCCC-chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHH-hhc-cCChHHHHHHHhcCChHHHH
Q 016465 252 IFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA-IGQ-AEPIPVLMEVIRTGSPRNRE 328 (389)
Q Consensus 252 L~~L~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~-~~~v~~L~~ll~~~~~~~~~ 328 (389)
+.||+..++ .+..+...-+++.+-.++...++..+..++..+.||..++..-.. +.+ ...++.....+.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 999988554 567788888888888888888999999999999999988776444 344 45677777777777778888
Q ss_pred HHHHHHHHHhhcCHHHHH-HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 329 NAAAVLWAICTGDAEQLK-IARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 329 ~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
+++.++..++.....++. ...-......+..++.+++..++........++
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 888888877776666665 444456788889999999999999887766664
No 177
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.27 E-value=0.0073 Score=59.44 Aligned_cols=266 Identities=18% Similarity=0.138 Sum_probs=164.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcc
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
-+..-++-+...+.++..+..-+++++..-.. .....+.++.+.++..++...+|+.|...+.++...-...... .
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~-~ 314 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDV-V 314 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhh-h
Confidence 33333444455677888888888888764332 6677789999999999988899999999888876422211111 2
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC--CchH
Q 016465 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ--GNKA 263 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~--~~~~ 263 (389)
..+.+.+++..++++..+++..+...+.|+..-+. .......++....++++...+.+..++.-...++... +...
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~ 392 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYP 392 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccccc
Confidence 34678899999999999999888888877533221 2333456778888888777777777776666665432 3455
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHH
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
.+....+++.+-.+..+.+..++...+..+..+.-.-. +..-+ ....+.+...++...+.++.+..+.+..+-..+..
T Consensus 393 ~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 393 NIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred ccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 66667778899888888888888888777777653211 11111 12345555555555666666655544443332222
Q ss_pred HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 344 QLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 344 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
..........++.+..+..+...+++.+..+.+..+
T Consensus 471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l 506 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL 506 (759)
T ss_pred ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 222233333444444444444444444444444333
No 178
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.26 E-value=0.00097 Score=62.14 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=104.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccc---cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH-
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSN---KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV- 222 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~- 222 (389)
++..++.+|++..+.+|.+|+...+.|+.--.+ ...+...|. .|.+-|....+++.-..+.++..+......+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 566777888899999999999988887642221 122223332 46677777788888777777776643322211
Q ss_pred HHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016465 223 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 223 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
+--..|.+|.|..+|++...++..+....++.++.......-..+ ..+--.|+++|.+-+.+++.+|...++.++..
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 111258999999999999999999999999999876654221111 12223578888888899999999999988753
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.25 E-value=0.0014 Score=48.31 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=62.5
Q ss_pred chhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhc
Q 016465 102 DRAAIDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 173 (389)
Q Consensus 102 ~~~~i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l 173 (389)
+-..+..|+++| .+.|+.+..-|+.-|+.+++..|..+..+-+.|+-..+.+++.+++++++..|+.++..+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 456899999999 455778888899999999999999999998889999999999999999999999998765
No 180
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.042 Score=53.88 Aligned_cols=168 Identities=20% Similarity=0.167 Sum_probs=123.1
Q ss_pred hcCCCHHHHHHHHHHH-HHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHH
Q 016465 113 LANGNVEEQRAAAGEL-RLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPD 191 (389)
Q Consensus 113 l~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~ 191 (389)
+.+++...+..|++.+ ..++.+++ . .-.++-+++.+...|.++++..-.=|...+...+....+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 6677778888888755 44554432 1 124566677777778888877766666666654422221 3667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCc
Q 016465 192 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 271 (389)
Q Consensus 192 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i 271 (389)
+.+=++++++.+|..|+++++.+-.. -....+++++.+++.++++.+|..|+-++.++=.- +.....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence 77778899999999999999877321 12235678999999999999999999999988543 23445567889
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016465 272 PPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 272 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
..+..++.++++.+..+|+..|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999999988754
No 181
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=9.4e-05 Score=61.08 Aligned_cols=52 Identities=21% Similarity=0.483 Sum_probs=40.7
Q ss_pred CCCcCcCCcccCcCCe----------ecCCccCccHHHHHHHHhcCC-CCCCCCCccCcCCCC
Q 016465 10 DDFRCPISLELMKDPV----------IVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLLHTAL 61 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv----------~~~c~h~~c~~ci~~~~~~~~-~~cp~c~~~~~~~~~ 61 (389)
++-.|.+|++-+...+ .+.|+|.|...||..|+.-|. .+||-|++.+.....
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 4568999998775544 589999999999999998544 589999877654433
No 182
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.15 E-value=0.057 Score=53.81 Aligned_cols=241 Identities=15% Similarity=0.147 Sum_probs=151.7
Q ss_pred HHhcCCHHHHHHHhcCC-----ChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc----cCC----HHHHHHHH
Q 016465 142 IAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK----NGS----MEARENAA 208 (389)
Q Consensus 142 ~~~~g~v~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~----~~~----~~~~~~a~ 208 (389)
+.+.|++..+++++.+- ..++....+.+|...+.-+.+|+.+.+.|+++.|+..|. .+. .++.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44568999999999762 445667778888888888999999999999999998884 333 55656666
Q ss_pred HHHHHhcCCch---hhHHH--H--------hhCcHHHHHHHhccC----ChhhHHHHHHHHHHhccCCCchHHHHhcCCc
Q 016465 209 ATLFSLSVIDE---NKVAI--G--------AAGAIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGNKARAVRAGIV 271 (389)
Q Consensus 209 ~~L~~Ls~~~~---~~~~~--~--------~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i 271 (389)
.++..+..... ..... . ....+..|++.+.+. ++.+....+++|-+|+...+.....+-..+-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 66555532211 10000 0 112366677776644 5778888899999999877655433221111
Q ss_pred HHHHHH--HhhcCcccHHHHHHHHHHHhcC-------hhhHHHhhccCChHHHHHHHhcCC--------hHHH-------
Q 016465 272 PPLMRF--LKDAGGGMVDEALAILAILASH-------QEGKTAIGQAEPIPVLMEVIRTGS--------PRNR------- 327 (389)
Q Consensus 272 ~~L~~l--l~~~~~~~~~~a~~~L~~l~~~-------~~~~~~i~~~~~v~~L~~ll~~~~--------~~~~------- 327 (389)
+ .+++ +......--...+.++..++.. ..-++.+++.|++...+++|...- ++.+
T Consensus 273 p-~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 P-YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred H-hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 1 1111 1111111113346666666632 234788899999999999987642 2333
Q ss_pred -HHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhhHh
Q 016465 328 -ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 328 -~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~ 384 (389)
..++.+|.-|+.+....+.. ...++++.+-.|-+.. +..+-..|..+|..+++..+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 35788888888877555444 5566775554444443 56788888888888887654
No 183
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.14 E-value=0.013 Score=52.47 Aligned_cols=199 Identities=13% Similarity=0.129 Sum_probs=146.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhh-----HHHHhc--CCHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNR-----VCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~--g~v~~L~~lL~~~~~~~~~~a~~~L~~l~ 174 (389)
..+.+..|+..|..-+.+.+..+.....++.......+ +.+... .++..|++--+ ++++.-.+-.+|....
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECI 151 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHH
Confidence 45788889999998999999999999999887554443 233332 23444444333 5667777778888888
Q ss_pred ccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhh---CcHHHHHHHhccCChhhHHHHHH
Q 016465 175 INDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAA---GAIPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 175 ~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~ 250 (389)
.++...+.+.....+..+.+.+..++-++...|..++..+-.. .......... .++...-.+|.+++.-++..++.
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 8887777777788889999999999999999999999886544 3333333332 56778888899999999999999
Q ss_pred HHHHhccCCCchHHHHh----cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh
Q 016465 251 AIFNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 302 (389)
Q Consensus 251 ~L~~L~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 302 (389)
.|+.|..+..+...+.. ..-+..++.+|.+.+..++..|..++.-...+|..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999888765543 45688899999999999999999999988876543
No 184
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.14 E-value=0.064 Score=52.75 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhc--ccCChHH
Q 016465 115 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPD 191 (389)
Q Consensus 115 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~l~~ 191 (389)
+..+....++.+++..++.....+...+. ..+...+..+.. ..+-++..|+++++..++ ...+. .+++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 44577777888888877764322222111 123333444433 355677788888877662 22222 3678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc--cCChhhHHHHHHHHHHhccCCCchHHHHhcC
Q 016465 192 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC--DGTPRGKKDAATAIFNLSIYQGNKARAVRAG 269 (389)
Q Consensus 192 L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 269 (389)
|+.+....+.++....+.+|+..+..++......+....|.++.++. ++++.+...+-.++..++....+...+ ...
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 99999888899999999999999888877666677778888887764 456777777777777776643333322 334
Q ss_pred CcHHHHHHHhhcC----cccHHHHHHHHHHHhcChh-hHHHhhccCChHHHHHHH-hcCChHHHHHHHHHHHHHhhcCHH
Q 016465 270 IVPPLMRFLKDAG----GGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVI-RTGSPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 270 ~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~v~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~ 343 (389)
.+|.++..|..+. ......++.+|..+.++.+ .-...+-.-+++.+.+.. ++++..+-.++-.+|..+...+.+
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 7899999998755 6677788888887765432 222222223667777764 566777788888999888876654
Q ss_pred HHH
Q 016465 344 QLK 346 (389)
Q Consensus 344 ~~~ 346 (389)
..-
T Consensus 694 q~~ 696 (1005)
T KOG2274|consen 694 QLL 696 (1005)
T ss_pred HHH
Confidence 443
No 185
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.12 E-value=0.052 Score=48.27 Aligned_cols=193 Identities=20% Similarity=0.201 Sum_probs=113.1
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh--hCcHHHHHHHhccCChhhHHHHHHHHHHhccC---CCchH
Q 016465 189 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY---QGNKA 263 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~---~~~~~ 263 (389)
+...+..+.+.+...|..++..+.++.........+.. ...+..+...++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44555666667788999999988887644433333322 25677888888877666666777777766654 22333
Q ss_pred HHHhcCCcHHHHHHHhhcCc--ccHHHHHHHHHHHhcChhh-HHHhhc-cCChHHHHHH--HhcC----------ChHHH
Q 016465 264 RAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASHQEG-KTAIGQ-AEPIPVLMEV--IRTG----------SPRNR 327 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~-~~~i~~-~~~v~~L~~l--l~~~----------~~~~~ 327 (389)
.+++ ...|.|...+.+... .++..++.+|+-++..... -..+.+ -..+..+... .+.. ++.+.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 4443 467788888887544 3445566666665532111 111110 0122222111 1111 23456
Q ss_pred HHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 328 ENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 328 ~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
..|+..-.-|... +........ ...++.|..++.+.+..+|..|.++|..|.+..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6666555555443 332233222 346899999999999999999999999886543
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.11 E-value=0.0035 Score=44.96 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC
Q 016465 286 VDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 364 (389)
Q Consensus 286 ~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 364 (389)
+..++..|..++.. +..-.... ...+++++..+.+.+.++|..|+.+|.|++....+..-. .-..+++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 34455556555532 22222222 237899999999999999999999999999754322211 2235888899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 016465 365 TDRAKRKAGSILELL 379 (389)
Q Consensus 365 ~~~~~~~a~~~L~~l 379 (389)
++.||..|.-+-+.|
T Consensus 81 d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAELLDRLL 95 (97)
T ss_pred chhHHHHHHHHHHHh
Confidence 999999886555544
No 187
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.11 Score=48.70 Aligned_cols=268 Identities=9% Similarity=-0.012 Sum_probs=147.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChH
Q 016465 111 GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP 190 (389)
Q Consensus 111 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~ 190 (389)
+-+.++++.-++.|+.+++....+..+..-.-.-..++|.+..+..++..-++..++|+++.++.+- ...+-..|-++
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~ 450 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLV 450 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCcccccc
Confidence 4456788999999999999988654443333333467888888887777778899999999987531 11122233333
Q ss_pred HHHHHHc---cCCHHHHHHHHHHHHHhcCCch-hh---HHHHhhCcHHHHHHHh------ccCChhhHHHHHHHHHHhcc
Q 016465 191 DIVDVLK---NGSMEARENAAATLFSLSVIDE-NK---VAIGAAGAIPALIRLL------CDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 191 ~L~~lL~---~~~~~~~~~a~~~L~~Ls~~~~-~~---~~~~~~~~i~~L~~ll------~~~~~~~~~~a~~~L~~L~~ 257 (389)
..+.... .+.+.....+.|...||...-. .. ..+. ....+.++.-| ...+...|..+..+|+.|..
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 3332222 2346666788888888864321 11 1111 12223333222 12345667777777777654
Q ss_pred C-CCchHHHH----h------cCCcHHHHHHHhhc----CcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC
Q 016465 258 Y-QGNKARAV----R------AGIVPPLMRFLKDA----GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 258 ~-~~~~~~~~----~------~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
. ++....+. + ...+..+-+.+... .++++.+-+.+|..+......--+-++.-.+..++++|++.
T Consensus 530 ~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~ 609 (858)
T COG5215 530 ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST 609 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc
Confidence 2 22221111 0 11122222222221 23455566666666553221111111122556777788776
Q ss_pred C-hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 323 S-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 323 ~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+ ..+-.....++.+|+..-.+. -+..-..++|.|.+-++..+..+...|..++..|++.
T Consensus 610 ~~t~~~~dV~~aIsal~~sl~e~-Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 610 KPTTAFGDVYTAISALSTSLEER-FEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred CCchhhhHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 4 344556666777776532222 2223335788888888777788888888888777653
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.04 E-value=0.044 Score=46.40 Aligned_cols=144 Identities=21% Similarity=0.167 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHHhccCCCchHH-HHh-cCCcHHHHHHHhhc-----Cc-------ccHHHHHHHHHHHhcChhhHHHh
Q 016465 241 TPRGKKDAATAIFNLSIYQGNKAR-AVR-AGIVPPLMRFLKDA-----GG-------GMVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 241 ~~~~~~~a~~~L~~L~~~~~~~~~-~~~-~~~i~~L~~ll~~~-----~~-------~~~~~a~~~L~~l~~~~~~~~~i 306 (389)
+++.|+.|+.-|..--..-++..- +-. .|.+..|++=+.+. .+ +-..+|+.+|..++++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 455666665555443322223322 223 46666665544331 11 23446888888999999999999
Q ss_pred hccCChHHHHHHHhcCC-----hHHHHHHHHHHHHHhhc-CHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 307 GQAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
++++..--|..+|+..+ +.+|-.+.++++.|... +++....+.+..+++..++.++.+++-.|..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99988888888887643 56788999999999886 4688888999999999999999999999999999999886
Q ss_pred hhHh
Q 016465 381 RIDM 384 (389)
Q Consensus 381 ~~~~ 384 (389)
..+.
T Consensus 168 ~dd~ 171 (262)
T PF04078_consen 168 LDDV 171 (262)
T ss_dssp HSHH
T ss_pred cchh
Confidence 5543
No 189
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.012 Score=57.27 Aligned_cols=219 Identities=18% Similarity=0.155 Sum_probs=139.4
Q ss_pred HhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHH
Q 016465 154 LLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPAL 233 (389)
Q Consensus 154 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L 233 (389)
.+.++...++-.++..|..+....+....+...+++...+..|++.++-+-..|...+..|+.. .....++.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3344456678889999999888777777777889999999999999988888888877776633 334566777
Q ss_pred HHH-hccCC---hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhcc
Q 016465 234 IRL-LCDGT---PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA 309 (389)
Q Consensus 234 ~~l-l~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 309 (389)
.+. .+..+ .+.+...-.++.++....+....-.....+...+..+++++...+..++..+++++..-..+-.=.=.
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 763 33221 34444455777776653332222222345666666677677777999999999999643321110112
Q ss_pred CChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHh---cCcHHHHHHHHHhC-ChHHHHHHHHHHHHH
Q 016465 310 EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARE---LDAEEALKELSESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 310 ~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l 379 (389)
.++..++.+... ++..+|+.|+.++..+-.+.....-.+.+ .+....+....... +..++..|...+..+
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 356666666665 45888999999999887754333222222 23444555555555 455666666666554
No 190
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.089 Score=49.27 Aligned_cols=220 Identities=17% Similarity=0.116 Sum_probs=115.3
Q ss_pred HHHHHHHhhcCCC----HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccccccc
Q 016465 105 AIDALLGKLANGN----VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 180 (389)
Q Consensus 105 ~i~~l~~~l~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 180 (389)
+.-++++.+.+.. .-.....+++...+.+.++..+..++ |.|-.-|++.-..+.-.+++++..++... ..
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~ 297 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEEN-VG 297 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhc-cC
Confidence 4445555554432 11122334444555555555544443 55555665555667777788887776533 11
Q ss_pred chhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 016465 181 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
..+.+ ..+..|-.+|++.....+-.|+++|..|+...+.+.... =+.+-.++.+.+..+...|...|..- ..++
T Consensus 298 ~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~IstyAITtLLKT-Gt~e 371 (898)
T COG5240 298 SQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC----NKEVESLISDENRTISTYAITTLLKT-GTEE 371 (898)
T ss_pred HHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhcccccchHHHHHHHHHc-Cchh
Confidence 22222 246777788888888899999999999986655433222 23344555666666655555444321 1122
Q ss_pred chHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh-HHHhhccCChHHHHHHH-hcCChHHHHHHHHHHHHHh
Q 016465 261 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVI-RTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~v~~L~~ll-~~~~~~~~~~a~~~L~~l~ 338 (389)
+...+ +..+..++.+.+++.+..++.++..|+-.-+. +..++ .-|...| +.+..+.+..++.+|..+.
T Consensus 372 ~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l-----~FL~~~L~~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 372 TIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL-----DFLGSSLLQEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred hHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH-----HHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22222 23334444555666677777777777753332 22221 1222222 2344555555555555555
Q ss_pred hcCHHHHH
Q 016465 339 TGDAEQLK 346 (389)
Q Consensus 339 ~~~~~~~~ 346 (389)
...|+..+
T Consensus 442 ~~~p~skE 449 (898)
T COG5240 442 ENDPDSKE 449 (898)
T ss_pred hhCchHHH
Confidence 55444433
No 191
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.99 E-value=0.0027 Score=45.51 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHH
Q 016465 227 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 295 (389)
Q Consensus 227 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 295 (389)
...+++++..+.+++.++|..|+.+|.|++..........-..+.+.|.+++.++++.|+..| ..|-+
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 468899999999999999999999999998654333222335678888888888888887766 44433
No 192
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.99 E-value=0.02 Score=48.74 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh
Q 016465 286 VDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 363 (389)
Q Consensus 286 ~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 363 (389)
...|+.+|.-++ -+++.+..+.++..+..+++++.. ..+.++..++.+|..+...++.+.+.+.+.+++..+..++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 445778887776 688889999999999999999954 568999999999999999999999999999999999999988
Q ss_pred C--ChHHHHHHHHHHHHHH
Q 016465 364 G--TDRAKRKAGSILELLQ 380 (389)
Q Consensus 364 ~--~~~~~~~a~~~L~~l~ 380 (389)
. +.++|-+..+.|...-
T Consensus 188 ~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccHHHhHHHHHHHHHHH
Confidence 6 6889999999887653
No 193
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.00058 Score=55.74 Aligned_cols=53 Identities=15% Similarity=0.427 Sum_probs=44.1
Q ss_pred CCCcCcCCcccCcCCee----cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016465 10 DDFRCPISLELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~----~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
..|.||+|.+.+.+.+. -+|||.+|..|.++.... ...||+|+.++...++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 56899999999988653 379999999999998764 678999999998776643
No 194
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.93 E-value=0.073 Score=43.26 Aligned_cols=93 Identities=22% Similarity=0.165 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHH
Q 016465 117 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL 196 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL 196 (389)
++.++..++.+++.++...+...+ ..++.+...|.++++.+|+.|+.+|..|...+-.+.. ...+..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467899999999999875544332 3478999999999999999999999998765322221 22347888899
Q ss_pred ccCCHHHHHHHHHHHHHhcCC
Q 016465 197 KNGSMEARENAAATLFSLSVI 217 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~ 217 (389)
.+++++++..|..++..++..
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998755
No 195
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0014 Score=64.82 Aligned_cols=72 Identities=32% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcC
Q 016465 7 VIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNG 79 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~ 79 (389)
++|++|.=|+..-+|.|||.+| .+++.||.-|++++-. ..+-|.||.+++.+.+.+|..++..|+.|...+.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 5899999999999999999998 8999999999999985 5668999999999999999999999999977543
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.90 E-value=0.0078 Score=60.58 Aligned_cols=231 Identities=18% Similarity=0.173 Sum_probs=144.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHh---hChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccc----
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAK---RNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI---- 175 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~---- 175 (389)
..+|-++.++..+..++|..|+.+|..+.. +-+..-..+...-.+|.|-.++.+ ....+|..-+..|..||.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 467788888888889999999999887653 222223334444567788788877 333344333333333321
Q ss_pred --------------cccccchhc----c-------cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcH
Q 016465 176 --------------NDSNKGTIV----N-------AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAI 230 (389)
Q Consensus 176 --------------~~~~~~~i~----~-------~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i 230 (389)
++++-+... + .++=+.+..+|.++.+.++...+..|..|+..-.-.. .+.-.+
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iL 619 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVIL 619 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchH
Confidence 111110010 0 1122334556666777788777777777763211000 112467
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccC
Q 016465 231 PALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAE 310 (389)
Q Consensus 231 ~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 310 (389)
+-|+..|++.|...|..-..-|.-++..-. .+-+++.++|.|.+-|.+.++-|...|+++|.-|+...-.++..+. .
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~ 696 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-D 696 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-H
Confidence 888899998887777655555554443211 2235677889999999999999999999999999876554433222 2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.++....+|-..+.-+|..++.+|.....
T Consensus 697 i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 697 ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 55666677777889999999999988765
No 197
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00089 Score=56.39 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=40.2
Q ss_pred cCcCCc-ccCcCCee----cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016465 13 RCPISL-ELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 13 ~Cpic~-~~~~~pv~----~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
.||.|. +.+.+|-. -+|||+.|.+|....|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499998 46666642 38999999999999999988999999988765443
No 198
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.90 E-value=0.0031 Score=45.23 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC--CChHHHHHHHHHHHhcccc-ccccchhcc
Q 016465 121 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSIN-DSNKGTIVN 185 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~--~~~~~~~~a~~~L~~l~~~-~~~~~~i~~ 185 (389)
+...++.|.+++..++.+.+.+++.|+++.+++.-.- .+|-+++.|+.++.+|+.. ++++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5567889999999999999999999999999998754 4899999999999999874 477766653
No 199
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00056 Score=60.43 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.5
Q ss_pred CCCCcCcCCcccCcCCe-----e---cCCccCccHHHHHHHHhcC------CCCCCCCCccCc
Q 016465 9 PDDFRCPISLELMKDPV-----I---VSTGQTYERSCIQKWLDAG------HKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv-----~---~~c~h~~c~~ci~~~~~~~------~~~cp~c~~~~~ 57 (389)
..+.+|-||++...++. . .+|.|+||..||..|-... .+.||.||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999888876 4 4599999999999998532 367999987653
No 200
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.86 E-value=0.075 Score=49.42 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=114.7
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCCh----hhHHHHHHHHHHhccCCCch
Q 016465 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP----RGKKDAATAIFNLSIYQGNK 262 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~L~~~~~~~ 262 (389)
.....+.+++.+++...+..+..-|..|+.+......+....++..|.+++.+++. ++....+.++..+-...-.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 35677899999999988888999999999998888889999999999999987754 44555566666554433322
Q ss_pred HHHHhcCCcHHHHHHHh--hcCcccHHHHHHHHHHHhcChh-hHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 263 ARAVRAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
...+...+|.....+.. ..+..+-..|+..|.++..... .+..+.++--+..|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 22333344444444442 2566788899999999987666 45666667789999999999999998888888777665
Q ss_pred c
Q 016465 340 G 340 (389)
Q Consensus 340 ~ 340 (389)
.
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 4
No 201
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.82 E-value=0.12 Score=45.97 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=112.4
Q ss_pred hHHHHHH-HhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-cc-ccc
Q 016465 104 AAIDALL-GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-ND-SNK 180 (389)
Q Consensus 104 ~~i~~l~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~ 180 (389)
+.+..++ ..+.+.++.+|..|+++|+-.+.-+.+... ..++.+...++.++..++..|+.++..+.. +. +..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555555 777889999999999999998865543221 236778888877899999999999998643 11 111
Q ss_pred c-------hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC----ChhhHHHHH
Q 016465 181 G-------TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG----TPRGKKDAA 249 (389)
Q Consensus 181 ~-------~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~ 249 (389)
. .......++.+.+.+.+.+++++..|+..+..|-....... ...++..|+-+.-++ +...+..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 12234577888899999999999999999999865543222 123344444443222 344444444
Q ss_pred HHHHHhccCCCchHHHHhcCCcHHHHHHHhhc
Q 016465 250 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA 281 (389)
Q Consensus 250 ~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~ 281 (389)
..+-..+......+..+...+++.+..+....
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 45556666666556666777777777776653
No 202
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.80 E-value=0.0052 Score=54.78 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=43.4
Q ss_pred CcCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016465 12 FRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
+.|.|.+++..+||.-+ .||.|.|+-|+++..+ +..||+.+++++.+++.+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 46999999999999855 9999999999999986 456999999887665543
No 203
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0003 Score=42.58 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=37.5
Q ss_pred CcCcCCcccCcCCeecCCccC-ccHHHHHHHHhcCCCCCCCCCccC
Q 016465 12 FRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~-~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
-.|.||.+-..|.|.-.|||. .|-.|-.+.+......||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 579999999888888899994 688888777775667899999875
No 204
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.78 E-value=0.0038 Score=46.08 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=60.4
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 311 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.+..|+++|.. .++.+..-|+.=|+.++..-|..+..+.+.|+-..+++++.+++++||..|..+++.+-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 68899999954 467778889999999999888888889899999999999999999999999999988753
No 205
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.77 E-value=0.057 Score=53.39 Aligned_cols=231 Identities=15% Similarity=0.106 Sum_probs=124.1
Q ss_pred HHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hh
Q 016465 142 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-EN 220 (389)
Q Consensus 142 ~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~-~~ 220 (389)
+..+.++|.+-.+..+.+..++...+..+..++-.-. +..-. .-.++.++..+++..++++....+.+..+-... ..
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI 471 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence 3344456666666666677777666666655542211 22222 235677788888888888888887665553332 22
Q ss_pred hHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh
Q 016465 221 KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 300 (389)
Q Consensus 221 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 300 (389)
.........++.+..+-.....+++....+.+..++.... ..+.+...-+.+...+.+....+++.|...+..++..-
T Consensus 472 g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~ 549 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF 549 (759)
T ss_pred cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh
Confidence 3334445666777777665567777777887777776544 23333333333444444445567777777777776432
Q ss_pred hhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 301 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 301 ~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
. .+.-.. ..++.++......+...|...+..+.-++. -.-+.+....+++.+..+..+..+.+|-.+++.|..+.
T Consensus 550 G-~~w~~~-~~i~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 550 G-SEWARL-EEIPKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred C-cchhHH-HhhHHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 2 111111 133333333333334444443333333322 11122333345666666666666666666666666554
Q ss_pred h
Q 016465 381 R 381 (389)
Q Consensus 381 ~ 381 (389)
.
T Consensus 625 ~ 625 (759)
T KOG0211|consen 625 K 625 (759)
T ss_pred h
Confidence 3
No 206
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.76 E-value=0.011 Score=48.27 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCchhhHHHHhh----------------CcHHHHHHHhcc------CChhhHHHHHHHHHHh
Q 016465 198 NGSMEARENAAATLFSLSVIDENKVAIGAA----------------GAIPALIRLLCD------GTPRGKKDAATAIFNL 255 (389)
Q Consensus 198 ~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~----------------~~i~~L~~ll~~------~~~~~~~~a~~~L~~L 255 (389)
+++......++.+|.||+..+.....+.+. ..+..|++.+.. ....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344455667888888888877666544322 356777777655 2344566788899999
Q ss_pred ccCCCchHHHHhc--CC--cHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhcc
Q 016465 256 SIYQGNKARAVRA--GI--VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA 309 (389)
Q Consensus 256 ~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 309 (389)
+..+++|..+.+. +. +..|+..+.+.+..-+.-++++|.|+|...+....+...
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 9999999999874 34 677888887776666778889999999988877777663
No 207
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.75 E-value=0.097 Score=46.57 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=103.8
Q ss_pred HHhcCCChHHHHHHHHHHHhccccccccchhc--ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC---chhhHHHHhh
Q 016465 153 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---DENKVAIGAA 227 (389)
Q Consensus 153 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~~~~~~ 227 (389)
..+.......|+.++..|.++.......+.+. ....++.+.+.++.+..+.+..|+.++.-++.. ......+. .
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-E 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-H
Confidence 33444456677777777766544332222222 134678888889888877777888888877655 12223332 3
Q ss_pred CcHHHHHHHhccCC--hhhHHHHHHHHHHhccCCC-chHHHHh-cCCcHHHHH--HHhh----------cCcccHHHHHH
Q 016465 228 GAIPALIRLLCDGT--PRGKKDAATAIFNLSIYQG-NKARAVR-AGIVPPLMR--FLKD----------AGGGMVDEALA 291 (389)
Q Consensus 228 ~~i~~L~~ll~~~~--~~~~~~a~~~L~~L~~~~~-~~~~~~~-~~~i~~L~~--ll~~----------~~~~~~~~a~~ 291 (389)
...+.|...+.+.. ..++..++.+|+-++.-.. ....+.. ...+..+.. .... +++.+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 56678888887654 4455566656655443111 1111110 011111111 1111 12346777776
Q ss_pred HHHHHhcC-hhh-HHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 292 ILAILASH-QEG-KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 292 ~L~~l~~~-~~~-~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.-+-|... +.. ..... ...++.|..+|++.+..+|..|..+|.-|..
T Consensus 209 aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66666543 332 12222 3478999999999999999999888876644
No 208
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.75 E-value=0.06 Score=43.74 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh
Q 016465 200 SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK 279 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~ 279 (389)
++.++..++.+++.|+...++- -...++.+...|.++++.+|..|+.+|..|...+-.+ .+..++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik---~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK---VKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee---ehhhhhHHHHHHHc
Confidence 4678889999999887544321 1346788999999999999999999999997654322 11233477888889
Q ss_pred hcCcccHHHHHHHHHHHhcC
Q 016465 280 DAGGGMVDEALAILAILASH 299 (389)
Q Consensus 280 ~~~~~~~~~a~~~L~~l~~~ 299 (389)
+++++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 209
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.72 E-value=0.1 Score=47.77 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=120.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhCh---hhhHHHHhcCCHHHHHHHhcCC-------ChHHHHHHHHHHHhcccccc
Q 016465 109 LLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 109 l~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~lL~~~-------~~~~~~~a~~~L~~l~~~~~ 178 (389)
+..+++..+.+.+..|+-....++++++ .++..+.+.-+++.+-++|... +.-.+..++.+|.-++.+++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 6677777778889999999999987553 3466788888889999999763 23456677778877888775
Q ss_pred c--cchhcccCChHHHHHHHccC-CH------HHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhh-HHHH
Q 016465 179 N--KGTIVNAGAIPDIVDVLKNG-SM------EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG-KKDA 248 (389)
Q Consensus 179 ~--~~~i~~~g~l~~L~~lL~~~-~~------~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-~~~a 248 (389)
. ...+++ .||.|..++..+ ++ .+...+..+|..++..+.....+...|+++.+.++-.-.+... ..-+
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 344554 589999999753 22 2678888999999998888888999999999998865443222 2222
Q ss_pred HHHHHHhc----cCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 249 ATAIFNLS----IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 249 ~~~L~~L~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
+.++.-+. ..++....+..- |..+..=+...+...+-..+.+|..+-.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22222211 112222222211 3333333333455666777777775543
No 210
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.057 Score=56.04 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=94.3
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhh
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG 307 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 307 (389)
..||.|.+.=-+++..++.....+...|..++.....-.-..+++.|+.-|.+..-.+++.++-+|..|-...+.-+..-
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 45666666655777777766666655676665555444445678888888888899999999999999987654432221
Q ss_pred c-cCChHHHHHHHhcCChHHHHH---HHHHHHHHhhcC-----HHHHHHHHhcCcHHHHHH--HHHhCChHHHHHHHHHH
Q 016465 308 Q-AEPIPVLMEVIRTGSPRNREN---AAAVLWAICTGD-----AEQLKIARELDAEEALKE--LSESGTDRAKRKAGSIL 376 (389)
Q Consensus 308 ~-~~~v~~L~~ll~~~~~~~~~~---a~~~L~~l~~~~-----~~~~~~~~~~~~~~~L~~--ll~~~~~~~~~~a~~~L 376 (389)
. ......+++.+++-.+.+|+. ++.+|..|+... +...+++.+ .++|.|+. .+ +.-+++|+.+...+
T Consensus 1078 ~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHH
Confidence 1 134455566665555566654 455666655421 111122221 13444442 22 55678888888888
Q ss_pred HHHHhhH
Q 016465 377 ELLQRID 383 (389)
Q Consensus 377 ~~l~~~~ 383 (389)
-.|.++.
T Consensus 1156 ~dl~Kss 1162 (1702)
T KOG0915|consen 1156 MDLAKSS 1162 (1702)
T ss_pred HHHHHhc
Confidence 8777654
No 211
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.16 Score=51.11 Aligned_cols=245 Identities=17% Similarity=0.133 Sum_probs=135.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
.++..|+..|++.|..+++.|++-++.++...+.. ....++...++++.-. ++..-..|+-+|..|+...-..-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 56777778888889999999999999999876622 2223556666655443 345556888888888753322111
Q ss_pred hcccCChHHHHHHHccC--------CHHHHHHHHHHHHHhcCCchhh--HHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016465 183 IVNAGAIPDIVDVLKNG--------SMEARENAAATLFSLSVIDENK--VAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~--------~~~~~~~a~~~L~~Ls~~~~~~--~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
.. ..++|.+++-|.-+ ...+|..|+.++|.++...... ..+...=+-..|+..+-+.+...|..|..|+
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 11 23566666666422 3568999999999887543221 1111111112233334466778898888888
Q ss_pred HHhccCCCchHHHHhcCCcHHHHHHHhhcC---cccHHHHHHHHH-HHhcChhhHHHhhccCChHHHHHH-HhcCChHHH
Q 016465 253 FNLSIYQGNKARAVRAGIVPPLMRFLKDAG---GGMVDEALAILA-ILASHQEGKTAIGQAEPIPVLMEV-IRTGSPRNR 327 (389)
Q Consensus 253 ~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~-~l~~~~~~~~~i~~~~~v~~L~~l-l~~~~~~~~ 327 (389)
-.......+. |.=++++...+ -..+.++..-+. .++..+..+.-+++ .|+.. +.+=+..+|
T Consensus 496 qE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 496 QENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 7654432222 11112222111 111222222221 22333333333222 11111 233368889
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHH
Q 016465 328 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 371 (389)
Q Consensus 328 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 371 (389)
+.++++|.+|+...++. ...+.++.|+.-..+.+...+.-
T Consensus 562 elaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g 601 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHG 601 (1133)
T ss_pred HHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhh
Confidence 99999999988865533 33456666666666666555543
No 212
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.65 E-value=0.0015 Score=56.51 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCCCCcCcCCcccCcCC---ee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016465 8 IPDDFRCPISLELMKDP---VI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~p---v~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
-...|.|||++..|..- |. .+|||.|+..++.+.- ....||+|+.++...++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence 46679999999999542 22 4899999999999873 24569999999986653
No 213
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.091 Score=51.49 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=122.7
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccc
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
..+.+..+..+..+.++-..++-.|+..|..+.+.. +....+...+++...+..|++.++-+--.|+..+..|+.
T Consensus 723 s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce---- 797 (982)
T KOG4653|consen 723 SVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE---- 797 (982)
T ss_pred cccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH----
Confidence 445566777788887777889999999999999743 556667778999999999999999888888887777663
Q ss_pred cchhcccCChHHHHHHHcc-C---CHHHHHHHHHHHHHhcCCc-hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH
Q 016465 180 KGTIVNAGAIPDIVDVLKN-G---SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 254 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~-~---~~~~~~~a~~~L~~Ls~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 254 (389)
+....++|.+.+.-.+ . .++.+...-.++.++.... +.... ...-.+..++..+++++...|..++..+++
T Consensus 798 ---vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 798 ---VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-YKAVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred ---hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 2345677777763322 1 1233333345555443221 11111 111345666666777777778899999999
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhc
Q 016465 255 LSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILAS 298 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 298 (389)
+|.-...+..=.-..++..++.+... .+.-+++.|+.++..+-.
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 98643322111222333444444443 566788889888888764
No 214
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.61 E-value=0.0021 Score=38.64 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=21.8
Q ss_pred CcCCcccCc--CCeec--CCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 14 CPISLELMK--DPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 14 Cpic~~~~~--~pv~~--~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
||+|.+.+. +--+. +||+-.|+.|..+.....+..||.|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789998873 22233 58999999999988875567899999764
No 215
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0011 Score=58.46 Aligned_cols=58 Identities=26% Similarity=0.624 Sum_probs=44.0
Q ss_pred CCcCcCCcccCcCCe-----ecCCccCccHHHHHHHHhc-CCCCCCCCCccCcCCCCCccHHHH
Q 016465 11 DFRCPISLELMKDPV-----IVSTGQTYERSCIQKWLDA-GHKTCPKTQQTLLHTALTPNYVLK 68 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv-----~~~c~h~~c~~ci~~~~~~-~~~~cp~c~~~~~~~~~~~n~~~~ 68 (389)
.-+||+|++-..-|+ .+.|||-|-..||++|+.+ ....||.|........+.+-+.++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHH
Confidence 468999999877664 4789999999999999953 124699998777666666555443
No 216
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0016 Score=57.47 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=39.9
Q ss_pred CCCCcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCC--CCCCCCCccC
Q 016465 9 PDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGH--KTCPKTQQTL 56 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~--~~cp~c~~~~ 56 (389)
...|.|||-.+--.| |+.+.|||..++..+.+...+|. +.||-|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 445899999987754 88899999999999999888777 7899996543
No 217
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.51 E-value=0.0035 Score=38.46 Aligned_cols=41 Identities=24% Similarity=0.675 Sum_probs=31.2
Q ss_pred cCcCCcc--cCcCCeecCCc-----cCccHHHHHHHHhc-CCCCCCCCC
Q 016465 13 RCPISLE--LMKDPVIVSTG-----QTYERSCIQKWLDA-GHKTCPKTQ 53 (389)
Q Consensus 13 ~Cpic~~--~~~~pv~~~c~-----h~~c~~ci~~~~~~-~~~~cp~c~ 53 (389)
.|.||++ .-.+|...||. +-+-+.|+.+|+.. +...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 34567777875 56899999999975 355799984
No 218
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.48 E-value=0.0015 Score=40.24 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=36.9
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCC
Q 016465 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 59 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~ 59 (389)
.+..|-.|...-...++++|||..|+.|...+ +..-||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 45567778877777889999999999997755 345699999988644
No 219
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.47 E-value=0.014 Score=46.29 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=96.6
Q ss_pred ChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch-HH
Q 016465 188 AIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-AR 264 (389)
Q Consensus 188 ~l~~L~~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~ 264 (389)
-++.++..|.. ..++++..+.-++..+- +..+.. ...-+-+.+-.++...+.+....+..++..+-...... ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34556666653 46678888888887772 222222 12222233334444444556677778888776654433 33
Q ss_pred -HHhcCCcHHHHHHHh--hcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc-CChH-HHHHHHHHHHH
Q 016465 265 -AVRAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPR-NRENAAAVLWA 336 (389)
Q Consensus 265 -~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~~~~-~~~~a~~~L~~ 336 (389)
+...|.++.++.++. ..+..++..++.+|..=|.....|..+.+. +++.|-++++. .++. +|..|+-+|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 346788999999998 678888889999999888888888887775 88999999954 4555 78888777754
No 220
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.45 E-value=0.26 Score=45.15 Aligned_cols=218 Identities=10% Similarity=0.069 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhc--cccccccchhcc-cCChHHHHHHHccC
Q 016465 123 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL--SINDSNKGTIVN-AGAIPDIVDVLKNG 199 (389)
Q Consensus 123 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l--~~~~~~~~~i~~-~g~l~~L~~lL~~~ 199 (389)
.|++.|-.+....+..-..+.+.+++..+++.|+.+-....+. .-...- ...++.+..... ..+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i--------~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI--------SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccccccc--------CHH
Confidence 4677777777767777788889999999999997742221111 000000 001111111111 000 000
Q ss_pred CHHHHHHHHHHHHHhcC-Cchh---hHHHHh-hCcHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCc-hHHHHhcCC
Q 016465 200 SMEARENAAATLFSLSV-IDEN---KVAIGA-AGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGN-KARAVRAGI 270 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~-~~~~---~~~~~~-~~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~ 270 (389)
.....+..++++..+.. .... -.-+.+ ...+..|...+.+. ...+...|+.++..+..+++. ...+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 11122223333333333 2111 112233 34455566666654 467788888999998887664 466778899
Q ss_pred cHHHHHHHh-h---cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCCh-------HHHHHHHHHHHHHhh
Q 016465 271 VPPLMRFLK-D---AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSP-------RNRENAAAVLWAICT 339 (389)
Q Consensus 271 i~~L~~ll~-~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~-------~~~~~a~~~L~~l~~ 339 (389)
++.+++.+. . ++.++....-.+|..||-+..+.+.+.+.+.+..+++++.+.+. +.-...-..+..|.+
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~R 232 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMR 232 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHc
Confidence 999999998 4 55667777778999999999999999999999999999977531 122223334455666
Q ss_pred cCHHHHHHHHh
Q 016465 340 GDAEQLKIARE 350 (389)
Q Consensus 340 ~~~~~~~~~~~ 350 (389)
+.|..+..+.+
T Consensus 233 H~p~Lk~~i~~ 243 (379)
T PF06025_consen 233 HHPSLKPDIID 243 (379)
T ss_pred cCHHHHHHHHH
Confidence 66655554444
No 221
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.12 Score=50.29 Aligned_cols=209 Identities=14% Similarity=0.133 Sum_probs=142.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHh-ccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh
Q 016465 148 IPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA 226 (389)
Q Consensus 148 v~~L~~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~ 226 (389)
-.-|..+|.+.....+..|+.-|.. ++...+ -...+|.+++...+.+.++++..---|...++.+++-..
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--- 107 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--- 107 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee---
Confidence 3567788888766666666654444 454433 234689999999999999999877777776665544322
Q ss_pred hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhh-HHH
Q 016465 227 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTA 305 (389)
Q Consensus 227 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 305 (389)
-.|..+-+-|+++++.+|..|+++|..+ |.-++..=++-.+-++..+..+.|+..|+.+|-.|-+.... +.+
T Consensus 108 -LSIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 108 -LSINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred -eeHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 2567777889999999999999888765 33333333344455566678899999999999888765443 333
Q ss_pred hhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 306 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 306 i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+..+-.+|.+.++.+--.|+.+.-.+|- +....+.. -...|+.++.+-++.-|.-...+|-..++.
T Consensus 181 -----L~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIHk--nyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 181 -----LEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIHK--NYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred -----HHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhhH--HHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 34556667778888888888887776664 33443332 366788888777776666666666665554
No 222
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.36 E-value=0.02 Score=38.34 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhhccC
Q 016465 245 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAE 310 (389)
Q Consensus 245 ~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~ 310 (389)
.+.++|+++++...+.+...+.+.++++.++++... +...++-.|..+|.-++.+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 567999999999988888888888999999999986 677899999999999999999988877655
No 223
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.32 E-value=0.00093 Score=44.65 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=22.9
Q ss_pred CCcCcCCcccCc-C---Ceec----CCccCccHHHHHHHHhc--CC--------CCCCCCCccCc
Q 016465 11 DFRCPISLELMK-D---PVIV----STGQTYERSCIQKWLDA--GH--------KTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~-~---pv~~----~c~h~~c~~ci~~~~~~--~~--------~~cp~c~~~~~ 57 (389)
+..|+||..... + |+.. .|+.+|...|+.+||.. +. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998764 2 4432 58999999999999973 11 14999998764
No 224
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.25 Score=47.93 Aligned_cols=181 Identities=22% Similarity=0.181 Sum_probs=94.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccc--------
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI-------- 175 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~-------- 175 (389)
.+|.+...|.+...-+|..|.-++..+-.... .++ ..+-..+-+.|.. .++..+++|.-.|...-.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence 44555566778888999999998888775311 111 1122233333332 244444554443332211
Q ss_pred ---------cccccchh-------------cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHH
Q 016465 176 ---------NDSNKGTI-------------VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPAL 233 (389)
Q Consensus 176 ---------~~~~~~~i-------------~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L 233 (389)
++..+-.+ .+...+..+..+|.+.++.++..|+..|..|+..+..-.. +...+
T Consensus 210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~ 284 (948)
T KOG1058|consen 210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTY 284 (948)
T ss_pred hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHH
Confidence 01111111 1133566677777777777777777777777765433222 12344
Q ss_pred HHHhcc-CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC
Q 016465 234 IRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 299 (389)
Q Consensus 234 ~~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 299 (389)
++++.. .+-.+..-.+--|..+. ..... +-.|.+-.++.+|.+++-+++..++.+...|+.+
T Consensus 285 i~l~~kesdnnvklIvldrl~~l~---~~~~~-il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 285 IDLLVKESDNNVKLIVLDRLSELK---ALHEK-ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHhccCcchhhhhHHHHHHHh---hhhHH-HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 444322 22223222222233332 11111 1234555667778888899999999888888754
No 225
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.27 E-value=1.3 Score=44.60 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=134.8
Q ss_pred ccchhHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc----CCC----hHHHHHH
Q 016465 100 DCDRAAIDALLGKLAN-----GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS----STD----PRTQEHA 166 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~----~~~----~~~~~~a 166 (389)
+.+.|++..++..+.+ .+.+.....++.|...++ -+.+|..+++.|+++.|++.+. .+. .++-+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3566788888888875 234455556666666665 6899999999999999999885 223 5677777
Q ss_pred HHHHHhcccccccc-----chhc--------ccCChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhhHHHHhhCc
Q 016465 167 VTALLNLSINDSNK-----GTIV--------NAGAIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVAIGAAGA 229 (389)
Q Consensus 167 ~~~L~~l~~~~~~~-----~~i~--------~~g~l~~L~~lL~~~----~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~ 229 (389)
+.++..|..+.... .... ...-+..|++.+.++ ++.+....+++|-+|+..++......-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 77766654322111 0101 122366677777654 5788889999999998776544332211 1
Q ss_pred HHHHHHHhccC--ChhhHHHHHHHHHHhcc----CC---CchHHHHhcCCcHHHHHHHhhcCcc----------------
Q 016465 230 IPALIRLLCDG--TPRGKKDAATAIFNLSI----YQ---GNKARAVRAGIVPPLMRFLKDAGGG---------------- 284 (389)
Q Consensus 230 i~~L~~ll~~~--~~~~~~~a~~~L~~L~~----~~---~~~~~~~~~~~i~~L~~ll~~~~~~---------------- 284 (389)
+.+.+++=.-+ ...--...+..++.++. +. .-+..+++.|++...++.|...-+.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 12222211111 00101122444444442 22 1246688899999999988763322
Q ss_pred cHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhc-C-ChHHHHHHHHHHHHHhh
Q 016465 285 MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-G-SPRNRENAAAVLWAICT 339 (389)
Q Consensus 285 ~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~-~~~~~~~a~~~L~~l~~ 339 (389)
....++.+|.-|+......+.+++.+++ .++..|.. . +..+=..|=.+|-.|..
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345788888888655544555556666 44444433 2 23333333334444444
No 226
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.27 E-value=0.23 Score=45.45 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=113.7
Q ss_pred chhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhcccccc
Q 016465 102 DRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDS 178 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~ 178 (389)
....+..++.-++.. ..+.+..|+..|..+..++ ...++... ..++..+++.|.+ .++..+..|+++|..++.+..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 345566666666544 4567788888777665544 22233221 1355778888887 678889999999999876543
Q ss_pred ccchhcc--cCChHHHHHHHccCCHHHHHHHHH-HHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016465 179 NKGTIVN--AGAIPDIVDVLKNGSMEARENAAA-TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 179 ~~~~i~~--~g~l~~L~~lL~~~~~~~~~~a~~-~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
.+ +.+ .-++..+++.-.+..+++...|.. ++.-++...+.+. |..+..++.+.|......++..+..+
T Consensus 363 ~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 363 AR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred Hh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHH
Confidence 32 222 123444555555555555444443 4444554444432 23444455556666666666677777
Q ss_pred ccCCCchHHH--HhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 256 SIYQGNKARA--VRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 256 ~~~~~~~~~~--~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
...-.. +.+ +-..+.|.+++...+.+..++..|+.+|..+..
T Consensus 434 ~e~l~~-EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 434 FERLSA-EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HhhcCH-HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 653221 222 225788899999999999999999999987763
No 227
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.25 E-value=0.054 Score=48.12 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=111.1
Q ss_pred CHHHHH-HHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh--H-
Q 016465 147 AIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK--V- 222 (389)
Q Consensus 147 ~v~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~- 222 (389)
.+..|+ ..+++.+..+|+.|+.+|+-.+.-+. .+.. ..++.+...++.+++.++..|+.++..+....+.. .
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 344444 56678899999999999998765432 2222 24677888888889999999999999886432211 1
Q ss_pred ------HHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh----cCcccHHHHHHH
Q 016465 223 ------AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----AGGGMVDEALAI 292 (389)
Q Consensus 223 ------~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~ 292 (389)
.......++.+.+.+.+.+++++..++..++.|...+.... ...++..|+-+..+ .+..++..-...
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 12234677888888988899999999999999876554332 13344455444444 223455555566
Q ss_pred HHHHhcChhhHHHhhccCChHHHHHHHhcC
Q 016465 293 LAILASHQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 293 L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
+-..+......+..+...+++.+..+....
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 666776555445555555777777766553
No 228
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.20 E-value=0.0053 Score=40.64 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=32.9
Q ss_pred CcCcCCcccCc---C-Cee-cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 12 FRCPISLELMK---D-PVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~---~-pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
-+||-|+--+. + |+. =.|+|.|-..||.+|++. ...||.+++...
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 35676766442 1 343 369999999999999996 456999998754
No 229
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.19 E-value=0.12 Score=51.03 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=143.8
Q ss_pred CChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHH
Q 016465 158 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRL 236 (389)
Q Consensus 158 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~l 236 (389)
..+.+.-.+.+++...+.....-..+.. -++...+..+. +..+.++..|+++++..+....... ...+++..|+++
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ql 538 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQL 538 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHH
Confidence 3556655777777655443222111111 12334444443 3345677778888877762221111 124778888888
Q ss_pred hccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcChhhHHHhhccCChHH
Q 016465 237 LCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPV 314 (389)
Q Consensus 237 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~ 314 (389)
....+.++....+.+|+..+.-+.......+..+.|..+.++.. .++.+...+-.++..++....+..-+.+ ..++.
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPs 617 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPS 617 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHH
Confidence 88778888888889999998887777777777888888887654 6777778888888888875544433333 37899
Q ss_pred HHHHHhcCC----hHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHHHHH-HHhCChHHHHHHHHHHHHHHhh
Q 016465 315 LMEVIRTGS----PRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKEL-SESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 315 L~~ll~~~~----~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~a~~~L~~l~~~ 382 (389)
++..++... .....-|+.+|..+.++.| ..-+.+... +++.+.+. ++++|..+-..+.++|+.+-..
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 999998765 5667788888887777642 233333332 45556554 4666888889999999887544
No 230
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.002 Score=42.19 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=33.7
Q ss_pred CCCcCcCCcccCcC-Ceec-CCccCccHHHHHHHHhc--CCCCCCCCCccCc
Q 016465 10 DDFRCPISLELMKD-PVIV-STGQTYERSCIQKWLDA--GHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~~~-pv~~-~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~ 57 (389)
-+-.||-|.-.=.| |.++ .|.|.|-..||.+|+.. +...||.||+...
T Consensus 30 Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 30 FDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34456666544444 4433 59999999999999974 3457999998653
No 231
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.33 Score=44.79 Aligned_cols=260 Identities=13% Similarity=0.041 Sum_probs=135.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHH-HhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
.+..+.....+++...+..|++.|.+.+.+.+......... .+..++. +....+.++.-.++.+|.-+.....++...
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 44445555556777899999999999998755443333222 3344443 334456788888888887765433333221
Q ss_pred c-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh--HHHHh--hCcHHHHHHHhccCChhhHHHHHHHHHHhccC
Q 016465 184 V-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK--VAIGA--AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 184 ~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~ 258 (389)
- --.+.-.+..+..+.+++.+..+..+++.|+...... ..+.+ .+...+++-.+.+.++.+. .|++.....+.-
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~p 416 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCYP 416 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcCc
Confidence 1 1123345667778889999999998888887543222 22221 2333445555566555443 456665555443
Q ss_pred CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHH-----Hh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHHHH
Q 016465 259 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI-----LA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 332 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~-----l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~ 332 (389)
.-.++... +.++...+.. ..-...+.| +. .+++.-.. .......++.+.-+.+++.+..
T Consensus 417 ~l~rke~~--~~~q~~ld~~--------~~~~q~Fyn~~c~~L~~i~~d~l~~-----~~t~~~~~f~sswe~vr~aavl 481 (533)
T KOG2032|consen 417 NLVRKELY--HLFQESLDTD--------MARFQAFYNQWCIQLNHIHPDILML-----LLTEDQHIFSSSWEQVREAAVL 481 (533)
T ss_pred hhHHHHHH--HHHhhhhHHh--------HHHHHHHHHHHHHHHhhhCHHHHHH-----HHHhchhheecchHHHHHHHHH
Confidence 22222211 1111111000 000011110 11 11111000 1111122333334566666665
Q ss_pred HHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 333 VLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 333 ~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
.-.++.-+- +..+......-+...|..+.+++-+++++.|.+++..+..
T Consensus 482 ~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 482 KTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 555544332 3333333333456667777788899999999999988754
No 232
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.25 Score=50.35 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=128.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhhHHHHhc--CCHHHHHHHhcCCChHHHHHHHHHHHhccccc--cccchhcccCCh
Q 016465 114 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSIND--SNKGTIVNAGAI 189 (389)
Q Consensus 114 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~l 189 (389)
++.+..+|..+.+.|..++.. +.......+. .+...|.+-+++.....+...+.+|..|...- +....+. . .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence 345788999999999999864 2222222211 34555666666666666777777776654321 2222222 2 34
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcC--C--chhhHHHHhhCcHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCc
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSV--I--DENKVAIGAAGAIPALIRLLC----DGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~--~--~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
+.++-.++..+...+..+..+|..+.. . ++..+. ....+..++..+. .+........+-++..+.....+
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 555555577788888888888887762 1 111000 1113444444443 33333322224444444432221
Q ss_pred h-HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 262 K-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 262 ~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
. ..-.-.+++..+..+|.+.++++...|++.+..++. .++....-.....++.++.+++.....++...-..|-.|+.
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1 112223455566667777899999999999998874 44443333333478888888888888888888888877776
Q ss_pred c
Q 016465 340 G 340 (389)
Q Consensus 340 ~ 340 (389)
.
T Consensus 899 k 899 (1176)
T KOG1248|consen 899 K 899 (1176)
T ss_pred H
Confidence 4
No 233
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.13 E-value=1.2 Score=41.71 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=116.5
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh-ccCChhhHHHHH----HHHHHhccCCCc
Q 016465 188 AIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAA----TAIFNLSIYQGN 261 (389)
Q Consensus 188 ~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~----~~L~~L~~~~~~ 261 (389)
.+..++.+..+. ++..+..++..+..|..-...... -...+..+...+ ...+...+..+. |....|......
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 667777776543 577778888888877654211111 123334444433 222333333343 444443322211
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhh-------------HHHhhccCChHHHHHHHhcCChHHH
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEG-------------KTAIGQAEPIPVLMEVIRTGSPRNR 327 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~-------------~~~i~~~~~v~~L~~ll~~~~~~~~ 327 (389)
. ....+..|++++.+ +++...|...+.-+... ++. ++.+... .++.|++..+..+...+
T Consensus 268 ~----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 268 L----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIK 340 (415)
T ss_pred h----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhH
Confidence 1 12235567777764 67788888888888876 322 3333332 67777777777777788
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 328 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 328 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
..-..+|.++..+-|...-.-.-..++|.|++-+..++.+++..+..+|..+-+..
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88999999998876644433333458899999998889999999999998886543
No 234
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0045 Score=50.71 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=34.6
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHh
Q 016465 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~ 43 (389)
...+.++-.|.+|++..+|||+.+-||.|||.||.+++-
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 345667778999999999999999999999999999885
No 235
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.08 E-value=0.4 Score=43.83 Aligned_cols=273 Identities=16% Similarity=0.108 Sum_probs=148.0
Q ss_pred hHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHH-HHHHHHHhcccccccc
Q 016465 104 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQE-HAVTALLNLSINDSNK 180 (389)
Q Consensus 104 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~-~a~~~L~~l~~~~~~~ 180 (389)
+-+..++.-+.++ ...+|..++-.|..-+. ++..+..+...|.+..+++.+... +..+.. .++.+++-++.+...-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4577777777733 45678888888888776 789999999999999999999553 332433 3444444556555555
Q ss_pred chhcccCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc---------cCChhhHHHHHH
Q 016465 181 GTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---------DGTPRGKKDAAT 250 (389)
Q Consensus 181 ~~i~~~g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~ 250 (389)
..+.+.+.+..+++++.-. ........- .....+-... ....+..+...+. ......+..|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 5555666677778888711 000000000 0000000000 0111122222221 112233444555
Q ss_pred HHHHhc--------------cC-CCchHHHHhcCCcHHHHHHHhh----c-------Cc-----ccHHHHHHHHHHHhc-
Q 016465 251 AIFNLS--------------IY-QGNKARAVRAGIVPPLMRFLKD----A-------GG-----GMVDEALAILAILAS- 298 (389)
Q Consensus 251 ~L~~L~--------------~~-~~~~~~~~~~~~i~~L~~ll~~----~-------~~-----~~~~~a~~~L~~l~~- 298 (389)
+|-.++ .. +-.+..+...|++..+++.+.+ . .+ .....++.+|.+.+.
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 555542 11 1124556677889999999862 1 11 123457788887774
Q ss_pred ChhhHHHhhcc--CCh-HHHHHHHhc---CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh---------
Q 016465 299 HQEGKTAIGQA--EPI-PVLMEVIRT---GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES--------- 363 (389)
Q Consensus 299 ~~~~~~~i~~~--~~v-~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--------- 363 (389)
+.+++..+... +.+ ..+..++.. ...+....+++++.|++.+++..+..+...++...+..+...
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 45556555442 223 333333332 234446789999999999998777777766444433322211
Q ss_pred -----CChHHHHHHHHHHHHHHhhHh
Q 016465 364 -----GTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 364 -----~~~~~~~~a~~~L~~l~~~~~ 384 (389)
..-+....+..+|=|+.++.+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 123455566666666665543
No 236
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.05 E-value=0.75 Score=42.41 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=97.7
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCch----hhHHHHhhCcHHHHHHHhccC-------ChhhHHHHHHHHHHhcc
Q 016465 189 IPDIVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLSI 257 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~L~~ 257 (389)
...+..+++..+.+.+-.|+-....+...++ ++..+.+.-+++-+-+++.+. +.-.+.-++.+|..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3446677777777778788888888887654 455577776667777777643 22345566778888998
Q ss_pred CCCch--HHHHhcCCcHHHHHHHhh-cCcc------cHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC
Q 016465 258 YQGNK--ARAVRAGIVPPLMRFLKD-AGGG------MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 323 (389)
Q Consensus 258 ~~~~~--~~~~~~~~i~~L~~ll~~-~~~~------~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~ 323 (389)
.++-. ..++ +.||.|.+.+.. .+++ +.+.+..+|..+++.+.+...++..|+++.+.++-.-.+
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 87743 4444 358889998876 3344 678899999999999999999999999999998766544
No 237
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.004 Score=54.34 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=38.2
Q ss_pred CCcCcCCcccCcCCeecCCcc-CccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 11 DFRCPISLELMKDPVIVSTGQ-TYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h-~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.-.|-||+.-.+|-+++||-| ..|..|-....-. ...||.||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchH
Confidence 568999999999999999999 5799998765532 345999999875
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.96 E-value=0.017 Score=31.51 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=26.0
Q ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 353 AEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 353 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
+++.++++++++++++|..|.+.|..+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999998764
No 239
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.95 E-value=0.25 Score=45.31 Aligned_cols=99 Identities=14% Similarity=0.270 Sum_probs=80.0
Q ss_pred HHh-cCCHHHHHHHhcCC---ChHHHHHHHHHHHhccccccc-cchhcccCChHHHHHHHc-cC---CHHHHHHHHHHHH
Q 016465 142 IAE-AGAIPLLVELLSST---DPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLK-NG---SMEARENAAATLF 212 (389)
Q Consensus 142 ~~~-~g~v~~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~l~~L~~lL~-~~---~~~~~~~a~~~L~ 212 (389)
+.+ ......|..++++. .+.+-..|+.++..+..+++. -..+.+.|.++.+++.+. .+ +.++....-.++.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 45667777777774 467888899999998877655 456668999999999998 43 6778888889999
Q ss_pred HhcCCchhhHHHHhhCcHHHHHHHhccC
Q 016465 213 SLSVIDENKVAIGAAGAIPALIRLLCDG 240 (389)
Q Consensus 213 ~Ls~~~~~~~~~~~~~~i~~L~~ll~~~ 240 (389)
.||.+......+.+.+.++.+++++.+.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999999999999999999999765
No 240
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0032 Score=58.78 Aligned_cols=45 Identities=27% Similarity=0.484 Sum_probs=35.8
Q ss_pred CCCCCCCCCCcCcCCcccC----cCCeecCCccCccHHHHHHHHhcCCCCCC
Q 016465 3 HRSPVIPDDFRCPISLELM----KDPVIVSTGQTYERSCIQKWLDAGHKTCP 50 (389)
Q Consensus 3 ~~~~~~~~~~~Cpic~~~~----~~pv~~~c~h~~c~~ci~~~~~~~~~~cp 50 (389)
.....+.+.+.|+||...| ..||++-||||.|+.|.+.-. +.+||
T Consensus 3 ~qa~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp 51 (861)
T KOG3161|consen 3 EQALKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCP 51 (861)
T ss_pred ccchhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCC
Confidence 3455677788999997655 479999999999999998764 35688
No 241
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.18 Score=48.82 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=55.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChH
Q 016465 111 GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP 190 (389)
Q Consensus 111 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~ 190 (389)
+-|+++++-+|-..++.|..|-. ++-- ...+|.+...|++.+.-+|++|+-++..+-.. -..+. ..+-+
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~-pDape 174 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLI-PDAPE 174 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhc-CChHH
Confidence 45667777777777777776642 2221 24678888999999999999999888877543 11122 12223
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHH
Q 016465 191 DIVDVLK-NGSMEARENAAATLF 212 (389)
Q Consensus 191 ~L~~lL~-~~~~~~~~~a~~~L~ 212 (389)
.+-..|. ..++..+++|.-.|.
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHH
Confidence 3334443 345555555554444
No 242
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0041 Score=54.31 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCCCCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 5 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 5 ~~~~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
....|....|-||.+-..+.+.+||||+.| |..-... ...||+||+.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 345677788999999999999999999988 7765443 45699999765
No 243
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.49 Score=47.80 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=154.0
Q ss_pred HHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCC---
Q 016465 124 AAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS--- 200 (389)
Q Consensus 124 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~--- 200 (389)
...+|..+.+.+.+|...+.+..++..++.++-+ .+-|...++++.-|...++.+ +....+-.+++.|+++-
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceec
Confidence 3567778888889999999999888888888844 456666666666554433221 11234567778887641
Q ss_pred ---------HHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccC----------ChhhHHHHHHHHHH-----h
Q 016465 201 ---------MEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDG----------TPRGKKDAATAIFN-----L 255 (389)
Q Consensus 201 ---------~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~----------~~~~~~~a~~~L~~-----L 255 (389)
.......+.+++..... ...+..+.+.+++..|...|..- |.-+...-...|.. +
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 12445566777776533 45677778888888888877421 21112222222222 2
Q ss_pred ccCCCchHHHHhcCCcHHHHHHHhhc------------------------CcccHH--HHHHHHHHHhc------Ch---
Q 016465 256 SIYQGNKARAVRAGIVPPLMRFLKDA------------------------GGGMVD--EALAILAILAS------HQ--- 300 (389)
Q Consensus 256 ~~~~~~~~~~~~~~~i~~L~~ll~~~------------------------~~~~~~--~a~~~L~~l~~------~~--- 300 (389)
+.+..|+..+-..=.-+.+.++|... .+.+.. .|+.-+-.+-. .+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33444443322111112222222211 111111 12222211111 11
Q ss_pred --hhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHH
Q 016465 301 --EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE---SGTDRAKRKAGSI 375 (389)
Q Consensus 301 --~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~a~~~ 375 (389)
..++.+...|++..|++.+-...+..+.+-+..+..++..++......-..|.++.|++++. +++...-..+.++
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 12567788899999999998889999999999999999988888888888899999988763 5556666667777
Q ss_pred HHHHHhhH
Q 016465 376 LELLQRID 383 (389)
Q Consensus 376 L~~l~~~~ 383 (389)
+..|+-++
T Consensus 977 vemLgayr 984 (2799)
T KOG1788|consen 977 VEMLGAYR 984 (2799)
T ss_pred HHHHhhcc
Confidence 77765543
No 244
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.86 E-value=0.0017 Score=61.89 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=35.3
Q ss_pred CcCcCCcccCcCCee---cCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016465 12 FRCPISLELMKDPVI---VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~---~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
-.||+|..-+.|-.. .+|+|.||..||..|... ..+||.|+..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 467777776665432 469999999999999874 5689999987753
No 245
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.83 E-value=0.21 Score=46.69 Aligned_cols=192 Identities=17% Similarity=0.162 Sum_probs=115.6
Q ss_pred hHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHh-cCCChHHHHHHHHHHHhccccccccc
Q 016465 104 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 104 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
..+..++.+..+. ++..+..+++.+..+...-+... .. ...+..+...+ ...+...+..++.++..+++---.|.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4677777775543 56778888888887774311111 00 12233333333 23344445555555444332100111
Q ss_pred hhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-ch--------hhHHHHhh----CcHHHHHHHhccCChhhHHHH
Q 016465 182 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DE--------NKVAIGAA----GAIPALIRLLCDGTPRGKKDA 248 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~--------~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a 248 (389)
.-.....++.|+.+|.+ +++...++..+.-+..+ ++ +...+... ..+|.|++..+..+...+...
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 11112356677888866 66677788888877655 22 12223333 566777777777666688888
Q ss_pred HHHHHHhccCCCchHHHHh-cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh
Q 016465 249 ATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 300 (389)
Q Consensus 249 ~~~L~~L~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 300 (389)
+.+|.++..+-+....+-+ ..++|.|++.|..++.+++..++.+|..+....
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999998876553322223 467899999998888999999999999888655
No 246
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=95.82 E-value=0.063 Score=44.71 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHHhcChhhHHHhhccCCh-------HHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHH-HHHHhcCcH
Q 016465 284 GMVDEALAILAILASHQEGKTAIGQAEPI-------PVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQL-KIARELDAE 354 (389)
Q Consensus 284 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~v-------~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~ 354 (389)
.-+..|+.+|..|+..+.+...++..+-. ..|++++.. ++.-.|+.|+.+|.+|+..+.... ....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 34789999999999999888888776544 444555543 467789999999999999887665 556677899
Q ss_pred HHHHHHHHhCChHHH
Q 016465 355 EALKELSESGTDRAK 369 (389)
Q Consensus 355 ~~L~~ll~~~~~~~~ 369 (389)
..|+.++++.+...+
T Consensus 219 ~~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998755443
No 247
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0094 Score=52.93 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=48.8
Q ss_pred CCcCcCCcccCcC------CeecCCccCccHHHHHHHHhcCCCCCCCCCccCc-----CCCCCccHHHHHHHHHH
Q 016465 11 DFRCPISLELMKD------PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL-----HTALTPNYVLKSLIALW 74 (389)
Q Consensus 11 ~~~Cpic~~~~~~------pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~-----~~~~~~n~~~~~~i~~~ 74 (389)
.+.|-+|.+-+++ |..+.|||++|..|+...+..+...||.||.+.. ...+..|..+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4689999987753 7778999999999998888776678999998842 22355666666666654
No 248
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.79 E-value=0.52 Score=45.00 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=86.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~ 182 (389)
.....++...+ ++...+.-|...|..+...-++..+. ++..++++.++++..+|..|+..|-.++.+. +....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34555555555 56888999999999988876665443 5789999999999999999999999999763 33333
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc---cCChhhHHHHHHHHHH
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---DGTPRGKKDAATAIFN 254 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~ 254 (389)
+.+.|+++|.++++.....+-.+|..|...++ .+.+..+...+. ++++.+|+.++..|..
T Consensus 97 -----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 -----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 46789999998887666666666666543221 244455555554 5677788888877753
No 249
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.70 E-value=0.0044 Score=54.46 Aligned_cols=45 Identities=31% Similarity=0.526 Sum_probs=37.6
Q ss_pred cCcCCcccCcCCeecCCccCccHHHHHHHHhcC-CCCCCCCCccCc
Q 016465 13 RCPISLELMKDPVIVSTGQTYERSCIQKWLDAG-HKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~-~~~cp~c~~~~~ 57 (389)
.|.||-+-=+|=.+=||||..|..|+..|-... ...||.||..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 588998887776667899999999999999643 678999997764
No 250
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.023 Score=53.33 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=64.8
Q ss_pred CCCCCCCcCcCCcccCcCCeecC-CccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHHHHhcCC
Q 016465 6 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 80 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~~~-c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~~~~~~~ 80 (389)
.++|++|.-|+..-.|+|||.+| .+-+..|+-|..++-. ..+-|.-|.|+..++++||..++..|..+....+.
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 46999999999999999999987 7889999999888875 56789999999999999999999999998665443
No 251
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.65 E-value=0.0078 Score=51.76 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=35.2
Q ss_pred CCCCcCcCCcccCc--CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCC
Q 016465 9 PDDFRCPISLELMK--DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 60 (389)
Q Consensus 9 ~~~~~Cpic~~~~~--~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~ 60 (389)
++++ ||+|.+.|. |--+ .+||...|+.|.......=+..||.||+....+.
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3445 999999885 3223 4688888888876655433456999998876543
No 252
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.091 Score=48.13 Aligned_cols=177 Identities=18% Similarity=0.085 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcCCchhhHH-HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccC----CCc-hHHHHhc-C-CcHHH
Q 016465 203 ARENAAATLFSLSVIDENKVA-IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY----QGN-KARAVRA-G-IVPPL 274 (389)
Q Consensus 203 ~~~~a~~~L~~Ls~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~----~~~-~~~~~~~-~-~i~~L 274 (389)
++..|.+++.-+...+..+.. ..-..+...+...+.+..-..+..++|+++|++.. -.+ +..-.+. | .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 455555655555444443322 22235556666667666778899999999998741 112 1111111 1 12222
Q ss_pred HHHHh---hcCcccHHHHHHHHHHHhcChhhHHHh----hccCChHHHHHH-HhcCChHHHHHHHHHHHHHhhcCHH-HH
Q 016465 275 MRFLK---DAGGGMVDEALAILAILASHQEGKTAI----GQAEPIPVLMEV-IRTGSPRNRENAAAVLWAICTGDAE-QL 345 (389)
Q Consensus 275 ~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~i----~~~~~v~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~-~~ 345 (389)
...-. .....++.+++..|+|+...-+..+.. +..+....+..- .-.+...++=+|+.+++||..+..- ..
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 22211 145778999999999998643321111 111222222211 2224577899999999999886521 11
Q ss_pred HHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHH
Q 016465 346 KIARELDAEEALKELSESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 346 ~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l 379 (389)
..-....+++.|..++.+. +-++|..|+.+|..-
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 1111123677888887765 778888888887543
No 253
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.50 E-value=0.017 Score=42.80 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=41.2
Q ss_pred CCCcCcCCcccCcCCeec----CCccCccHHHHHHHHhc--CCCCCCCCCccCcCC
Q 016465 10 DDFRCPISLELMKDPVIV----STGQTYERSCIQKWLDA--GHKTCPKTQQTLLHT 59 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~----~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~~~ 59 (389)
.-+.|.||++.-.|..++ .||...|..|.-..|+. -...||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 568999999999999886 48999999999988874 346799999877543
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.45 E-value=1.2 Score=36.77 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=97.7
Q ss_pred HHHHHHHHhccccccccchhcccCChHHHHHHHc---cC--CHHHHHHHHHHHHHhcCCch--hhHHHHhhCcHHHHHHH
Q 016465 164 EHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK---NG--SMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRL 236 (389)
Q Consensus 164 ~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~---~~--~~~~~~~a~~~L~~Ls~~~~--~~~~~~~~~~i~~L~~l 236 (389)
..|+..|.-++++++.+..+.+..+---+...|. +. -+.++..++.+++.|..+++ ....+....++|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 4666677778899999999987654333444443 32 25678899999999987754 44556667999999999
Q ss_pred hccCChhhHHHHHHHHHHhccCCCchHHHHh--------cCCcHHHHHHH-hhcCcccHHHHHHHHHHHhcChhhHHHhh
Q 016465 237 LCDGTPRGKKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIG 307 (389)
Q Consensus 237 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--------~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 307 (389)
+..+++--+.-|+.++..+..++.+...+.+ ..++..++.-+ ......+...++.+-..++..+..|..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 9988877777777777777766665444332 12223332222 23566777788888888888887776653
No 255
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.44 E-value=0.14 Score=50.65 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=99.8
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHh--cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh-hhHH
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKT 304 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~ 304 (389)
..+|.|++.+...+...+..-+.+|.++..+-+. ..+.. ...+|.|++.|.-++..++..++.++.-+.... ....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 6788888888866777777788888887764333 22222 356788888888899999999998887766432 2222
Q ss_pred HhhccCChHHHHHHHhcCC---hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHH
Q 016465 305 AIGQAEPIPVLMEVIRTGS---PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSI 375 (389)
Q Consensus 305 ~i~~~~~v~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~ 375 (389)
.-++ -.++.++.+-.+.+ ..+|..|+.+|..|...-|...-.-.+..++..|...+.++...+|+.|..+
T Consensus 946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2222 25666766665554 5679999999999998433222222333577788888888777788888754
No 256
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.43 E-value=0.49 Score=44.29 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=109.6
Q ss_pred cHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCc----ccHHHHHHHHHHHhcChhhHH
Q 016465 229 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG----GMVDEALAILAILASHQEGKT 304 (389)
Q Consensus 229 ~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~ 304 (389)
....+.+.+.+++...+..++.-|..++.+......++...++..|..++.+... ++....+.++..+-.+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456777888888888888889999999888888899999999999999988544 333344444444433222111
Q ss_pred HhhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 305 AIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 305 ~i~~~~~v~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
..+...+|.....+..- .+..+-..|+..|-++..++....+.+.+.--+..|+..++..+.+++..|...+..+.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11223345555555522 24556678999999999888878888899999999999999999999988888777663
No 257
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.38 E-value=0.12 Score=42.43 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=63.0
Q ss_pred hHHHHhcCCcHHHHHHHhhc---------CcccHHHHHHHHHHHhcChhhHHHhhc-cCChHHHHHHHhcCChHHHHHHH
Q 016465 262 KARAVRAGIVPPLMRFLKDA---------GGGMVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
...|++.||+..|+++|..- +......++.+|..|..+..+...+++ .+++..|...+.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 46788899999999988761 124677899999999999999888877 77899999999999999999999
Q ss_pred HHHHHHh
Q 016465 332 AVLWAIC 338 (389)
Q Consensus 332 ~~L~~l~ 338 (389)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 258
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=0.5 Score=48.27 Aligned_cols=142 Identities=23% Similarity=0.195 Sum_probs=107.2
Q ss_pred HHHHHHHhhc----CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccccccc
Q 016465 105 AIDALLGKLA----NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSN 179 (389)
Q Consensus 105 ~i~~l~~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~ 179 (389)
+.|.+++..+ .+|++.+..|.-+|..+..-+.+..+ .-+|.|+..+. ++++.+|.+++.+++.++..-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4556666663 46799999999999998765544432 24689999997 67899999999999888753322
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 259 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~ 259 (389)
+++. .-+.|...|.+.++.++..|.-+|.+|-.++ .+.-.|.+..+..++.+++.+++..|=.....|+...
T Consensus 995 ---lie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 995 ---LIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred ---ccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 2222 3467888889999999999999999997554 3334699999999999999998888777777776544
No 259
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.37 E-value=0.05 Score=29.64 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAK 133 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~ 133 (389)
.+|.+++.++++++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999985
No 260
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.28 E-value=0.0097 Score=36.68 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcCcCCcccCcCCee-cCCccCccHHHHHHHHh----cCCCCCCCCCcc
Q 016465 11 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLD----AGHKTCPKTQQT 55 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~----~~~~~cp~c~~~ 55 (389)
.+.||++...+.-|+- ..|.|.-|-+ ++.|+. .+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3789999999999996 6799975533 445554 345689999864
No 261
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=2.3 Score=41.37 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=78.3
Q ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHH
Q 016465 145 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 224 (389)
Q Consensus 145 ~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~ 224 (389)
.|.+..+++-..+.+..+|...+.+|..+.......+.-+-.+....+..-+.+..+.++..|+.+|..+=.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 35667777777778899999999999888764444444444567777888888888999999999999985432110
Q ss_pred HhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCCchHHHH
Q 016465 225 GAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAV 266 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~ 266 (389)
+..+...+..++.+ +++++|..++ .|++.++.....++
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHH
Confidence 12455677777764 4678887654 45555544443333
No 262
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.18 E-value=0.096 Score=41.50 Aligned_cols=144 Identities=16% Similarity=0.103 Sum_probs=91.2
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc-cccccch
Q 016465 106 IDALLGKLAN--GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGT 182 (389)
Q Consensus 106 i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 182 (389)
+..++..|.. ..++++..++-++..+- +..++.+. .-.-+.+-..+...+.+-...++.++..+-. .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3445555553 45668888888887774 22222221 1122444444544444566677777777654 3344444
Q ss_pred h-cccCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc-cCChh-hHHHHHHHHHH
Q 016465 183 I-VNAGAIPDIVDVLK--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPR-GKKDAATAIFN 254 (389)
Q Consensus 183 i-~~~g~l~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~a~~~L~~ 254 (389)
+ ...|.++.++.+.. ..+...+..++.+|..-+.+...+..+ ...+++.|-++++ +++.. ++..|+-+|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4 47899999999998 778888888888888766655555444 4667799999995 44555 78888877764
No 263
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.014 Score=50.51 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=38.9
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
.++-.||||----...|+.||+|.-|..||.+++-+ ...|=.|+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 367899999988888899999999999999999874 45577776544
No 264
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.016 Score=50.98 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=34.7
Q ss_pred CCCCcCcCCcccCcCCe---ec-CCccCccHHHHHHHHhcC--CCCCCCCCccCc
Q 016465 9 PDDFRCPISLELMKDPV---IV-STGQTYERSCIQKWLDAG--HKTCPKTQQTLL 57 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv---~~-~c~h~~c~~ci~~~~~~~--~~~cp~c~~~~~ 57 (389)
|-.-.|.||-+.+-.-. .+ .|||+|.-.|+.+||... ++.||.|+..+.
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 34457999966553211 13 599999999999999853 258999984444
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.15 E-value=0.0076 Score=52.92 Aligned_cols=43 Identities=19% Similarity=0.571 Sum_probs=35.1
Q ss_pred CCcCcCCcccCc--CC--eecCCccCccHHHHHHHHhc-CCCCCCCCC
Q 016465 11 DFRCPISLELMK--DP--VIVSTGQTYERSCIQKWLDA-GHKTCPKTQ 53 (389)
Q Consensus 11 ~~~Cpic~~~~~--~p--v~~~c~h~~c~~ci~~~~~~-~~~~cp~c~ 53 (389)
.+.|..|++.+- +- ..+||.|+|.-+|+++++.+ +.++||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 478999999773 22 24899999999999999974 567999998
No 266
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=4.2 Score=41.13 Aligned_cols=235 Identities=14% Similarity=0.117 Sum_probs=127.8
Q ss_pred hHHHHHHHhhc------C--CCHHHHHHHHHHHHHHHh---hChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHh
Q 016465 104 AAIDALLGKLA------N--GNVEEQRAAAGELRLLAK---RNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN 172 (389)
Q Consensus 104 ~~i~~l~~~l~------~--~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~ 172 (389)
+.++.++..|. . .++.-..-|++.+++++. .....+.. .+.=.++.+...++++-.-+|..|++++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 34566666665 1 245566778888887763 11121211 111234444455566667799999999999
Q ss_pred ccccc-cccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhh-HHHHh--hCcHHHHHHHhccCChhhHHH
Q 016465 173 LSIND-SNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENK-VAIGA--AGAIPALIRLLCDGTPRGKKD 247 (389)
Q Consensus 173 l~~~~-~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~--~~~i~~L~~ll~~~~~~~~~~ 247 (389)
++..+ .....+. .++....+.|. +.+-.++..|+-+|..+..+.+.. ..+.. .+..+.|+.+.+..+-+....
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 88532 3333332 35777777777 667789999999999887665433 33332 256667777766554444433
Q ss_pred HHHHH-HHhccCCC-chHHHHhcCCcHHHHHHHhh---c---CcccHHHHHHHHHHHhc---ChhhHHHhhc---cCChH
Q 016465 248 AATAI-FNLSIYQG-NKARAVRAGIVPPLMRFLKD---A---GGGMVDEALAILAILAS---HQEGKTAIGQ---AEPIP 313 (389)
Q Consensus 248 a~~~L-~~L~~~~~-~~~~~~~~~~i~~L~~ll~~---~---~~~~~~~a~~~L~~l~~---~~~~~~~i~~---~~~v~ 313 (389)
.+..+ ...+..-. ....+. ........+++.. . +++-...|.++|..+.+ .-++...+.. ..+++
T Consensus 567 vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33322 22221100 111111 2334455566653 2 22334455566655543 2222222222 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcCH
Q 016465 314 VLMEVIRTGSPRNRENAAAVLWAICTGDA 342 (389)
Q Consensus 314 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 342 (389)
.+-.++++.-.++-+.++.++..++...+
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~ 674 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLSK 674 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhc
Confidence 55555666667778888888888776553
No 267
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.13 E-value=1.1 Score=38.23 Aligned_cols=200 Identities=19% Similarity=0.170 Sum_probs=112.0
Q ss_pred HHHHH-HhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh
Q 016465 149 PLLVE-LLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 227 (389)
Q Consensus 149 ~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~ 227 (389)
+.|+. +-+..+++.+...+.+|..++.++. ....-+++.|..+.+.+..+....+.+.+..+-..++-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 33444 4445688999999999999987761 1122245677777777777776667777766643322111
Q ss_pred CcHHHHHHHh--------ccC--ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHH-hhcCcccHHHHHHHHHHH
Q 016465 228 GAIPALIRLL--------CDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL-KDAGGGMVDEALAILAIL 296 (389)
Q Consensus 228 ~~i~~L~~ll--------~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l 296 (389)
+.+..++..+ .++ ..+.....+..+..+|...++ .....++.+..+| .+.++.++..++.+|..+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3344444331 111 233344445677888776555 2234577888888 677888889999999999
Q ss_pred hcChhhHHHhhc-cCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCCh
Q 016465 297 ASHQEGKTAIGQ-AEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTD 366 (389)
Q Consensus 297 ~~~~~~~~~i~~-~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~ 366 (389)
+. ..+++ ......+.+.+... .+.+....+..+..+.... +..........++..+.++..+.+.
T Consensus 150 c~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 150 CE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 93 22222 12233444444322 2444433333333332221 1222233455677788887777653
No 268
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.11 E-value=0.025 Score=47.17 Aligned_cols=62 Identities=27% Similarity=0.322 Sum_probs=42.9
Q ss_pred CcCcCCcccCcCCee-cCCccCccHHHHHHHHhc-CCCCCCCCCcc--C--cCCCCCccHHHHHHHHH
Q 016465 12 FRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPKTQQT--L--LHTALTPNYVLKSLIAL 73 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~-~~~~cp~c~~~--~--~~~~~~~n~~~~~~i~~ 73 (389)
+.||++.....+|+. ..|||.|.|..|..++-. ....||+-+.+ . ....+.+...+++-|++
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 789999999999997 579999999999998863 23469994333 2 23334444344444444
No 269
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.01 E-value=0.094 Score=51.79 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=104.3
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhc-c-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHH
Q 016465 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-N-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVA 223 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 223 (389)
.++|.|++.........+..-+.+|.++..+-+. ..+. + ...+|.|++.|+-++..++..+..++.-+....+.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 5788899888865556666666666665553333 3333 2 56788899999989999988888888776543332222
Q ss_pred HHhhCcHHHHHHHhccCC---hhhHHHHHHHHHHhcc-CCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHH
Q 016465 224 IGAAGAIPALIRLLCDGT---PRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 293 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 293 (389)
-.-...++.++.+=.+.+ ..+|..|+.+|..|.. .+...-...+..++..|.+.|.++..-+++.|+.+=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 222356777777755544 6789999999999998 566666666778889999999988888888887653
No 270
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.98 E-value=0.26 Score=42.08 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhc-cccccccchhcccCChHHHHHHHc
Q 016465 120 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNL-SINDSNKGTIVNAGAIPDIVDVLK 197 (389)
Q Consensus 120 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~l~~L~~lL~ 197 (389)
....|+..|.-++--.+..+..+.+...+..|+.+|.. ..+.++..++.+|..+ ..++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 46668899999888888999999999999999999954 5788888888888875 456678888888999999999998
Q ss_pred cC--CHHHHHHHHHHHHHh
Q 016465 198 NG--SMEARENAAATLFSL 214 (389)
Q Consensus 198 ~~--~~~~~~~a~~~L~~L 214 (389)
+. +.+++-.++..|.-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 75 467777777777654
No 271
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.95 E-value=2.3 Score=37.14 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=137.6
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHh-----cCCHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-----AGAIPLLVELLSSTDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~ 175 (389)
.++|....+++.+...+.+.+..++....++-......+...++ ...+..|++--.. .+++.-.+-..|.....
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIR 154 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHh
Confidence 35677888999998888899999998888877544333322221 2344444443111 25555555555555566
Q ss_pred cccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhHHHHhh---Cc-HHHHHHHhccCChhhHHHHHH
Q 016465 176 NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVAIGAA---GA-IPALIRLLCDGTPRGKKDAAT 250 (389)
Q Consensus 176 ~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~~~~~---~~-i~~L~~ll~~~~~~~~~~a~~ 250 (389)
++...+.+.++.-+......++.++-++...|......+..... ....+... .. .+.--.++.+++.-++..+..
T Consensus 155 he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 155 HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 66666667777778888888888887887788887777654432 11222222 22 333566788899999999999
Q ss_pred HHHHhccCCCchHHHHh----cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChh
Q 016465 251 AIFNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 251 ~L~~L~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 301 (389)
+|+.+-.+..|...+.. ..-+..++.+|++++..++-.|..+.+-...++.
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999988887765543 4668889999999999999999999998876654
No 272
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.95 E-value=1.9 Score=39.84 Aligned_cols=145 Identities=18% Similarity=0.079 Sum_probs=94.9
Q ss_pred CcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHH-HHHHHhcChhhHHH
Q 016465 228 GAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALA-ILAILASHQEGKTA 305 (389)
Q Consensus 228 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~ 305 (389)
..+..+++.|.+ .+...+..|+++|..++.+...+-.=..+-+|..+++.-.+.++++...|.. ++.-++++.+.+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-- 406 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-- 406 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--
Confidence 345566777776 6788899999999999876654322111234666777777777777766664 445555543322
Q ss_pred hhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 306 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 306 i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
.+..+..++.+.++..-..++..+..++..- .+....+ -..+.|.+++-..+.+..+|+.|..+|-.|.
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~l-l~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNL-LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHh-hhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 4455666777777666666676777777642 2222211 2358888888889999999999988876663
No 273
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.5 Score=45.87 Aligned_cols=97 Identities=24% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCHHHHHHH-hcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHH
Q 016465 146 GAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVA 223 (389)
Q Consensus 146 g~v~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~ 223 (389)
++|..|+.. .++.+.++|+.|+-+|+-+... +...++..+.+|.. -++-+|+-++.+|+-.+.....+..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~--------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR--------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEec--------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 345555555 4455777888887777765432 23345667777754 4788888888888877665544433
Q ss_pred HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 224 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+..|-.+..+...-+|..|+-++.-+.
T Consensus 626 ------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 626 ------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 334444455555566777776666543
No 274
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.86 E-value=2 Score=42.98 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=108.7
Q ss_pred HHHHhcCC-chhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCCchHHHHhcCCc--HHHHHHHhhcCc-c
Q 016465 210 TLFSLSVI-DENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIV--PPLMRFLKDAGG-G 284 (389)
Q Consensus 210 ~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i--~~L~~ll~~~~~-~ 284 (389)
+|+++... ++++..+.+.|+...+...++. +..+....+++.+.|++...+.+........+ ..+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 55566544 4677788889999999999974 45678889999999998766544332211111 223333333333 6
Q ss_pred cHHHHHHHHHHHhcChhh------H----HHh--------------hccCChHH-HHHHHhc-CChHHHHHHHHHHHHHh
Q 016465 285 MVDEALAILAILASHQEG------K----TAI--------------GQAEPIPV-LMEVIRT-GSPRNRENAAAVLWAIC 338 (389)
Q Consensus 285 ~~~~a~~~L~~l~~~~~~------~----~~i--------------~~~~~v~~-L~~ll~~-~~~~~~~~a~~~L~~l~ 338 (389)
....|+.+|+.+..+.+. + +.+ .....+.. +.+++.. ..+..+.+|++++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677788888887754221 1 111 11122333 5555544 45778899999999999
Q ss_pred hcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHH
Q 016465 339 TGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILEL 378 (389)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~ 378 (389)
..++++.+.+.+.|++..+..+-... ...++..+..++..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99989999999999998888755433 44555555555443
No 275
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=2.2 Score=41.94 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 016465 153 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID 218 (389)
Q Consensus 153 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 218 (389)
+.+.+....+...|+.++.++.... -+.+.. .+..|--+++++...+|-.|.++|..++...
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~--~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTN--SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccC--Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 3334444455555555555553211 111111 4555555566666666666666666665443
No 276
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.84 E-value=0.66 Score=40.52 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhC--cHHHHHHHhcc----CChhhHHHHHHHHHHhccCCCchH
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~--~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
..+.+++.+-..+-+--++..++-+..++.....+...+ ....+..++.. ..+..+..+++++.|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 344444444333334445566655555554444443332 23444444432 356778889999999999998888
Q ss_pred HHHhcC--CcHHHHHHHhhc----CcccHHHHHHHHHHHhcChhhHHH--hhccCChHHHHHHHhc--CChHHHHHHHHH
Q 016465 264 RAVRAG--IVPPLMRFLKDA----GGGMVDEALAILAILASHQEGKTA--IGQAEPIPVLMEVIRT--GSPRNRENAAAV 333 (389)
Q Consensus 264 ~~~~~~--~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~--i~~~~~v~~L~~ll~~--~~~~~~~~a~~~ 333 (389)
.+.+.. .+-..+..+... +..++..+..++.|++..-..... -.....+..+.+.+.. .++++...++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 877642 233333323222 677888889999999853222111 0111234555553332 578999999999
Q ss_pred HHHHhhcCHHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHH
Q 016465 334 LWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSI 375 (389)
Q Consensus 334 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~ 375 (389)
|++|...++.........|+-..+...... .++++++-+.++
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 999998776666655556766666665544 467788777653
No 277
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=1.9 Score=43.40 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=87.0
Q ss_pred CCHHHHHHHhcC--------CChHHHHHHHHHHHhccc----cccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHH
Q 016465 146 GAIPLLVELLSS--------TDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS 213 (389)
Q Consensus 146 g~v~~L~~lL~~--------~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~ 213 (389)
|+++.+++++.+ .++.-.+.|+.++++|+. ....+..+ +.=.++.+...++++.--++..|+|+++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 577788888862 245566788888888763 22333332 22245566677788888899999999999
Q ss_pred hcCCc-hhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHhc---CCcHHHHHHHhhcCc
Q 016465 214 LSVID-ENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRA---GIVPPLMRFLKDAGG 283 (389)
Q Consensus 214 Ls~~~-~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~---~~i~~L~~ll~~~~~ 283 (389)
++..+ ..... -..++....+.|. +.+-.++..|+-||..+..+.+....-+.+ +.++.|+.+....+.
T Consensus 489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 98432 22221 1345566666666 667889999999999988766544332332 445556666655433
No 278
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.74 E-value=0.39 Score=48.16 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=119.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhcc
Q 016465 107 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 107 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
+.+...+.+.++..+.+|+..+........ ........|.+..+++.... .+..+...|+..|..|+..-..-..=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 445555668899999999999998886433 11111112344444444433 3667777888888887753211111112
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC--chH
Q 016465 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG--NKA 263 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~--~~~ 263 (389)
.+.++.|+.-+.+....++..+..++-..+... .....++.++..+++.++.++..+...+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 457888999998888888777777666554311 123466788888999999999887777665554332 222
Q ss_pred HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh
Q 016465 264 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 297 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 297 (389)
.-.-.+.++.++....+.+.+|+..|..++..+.
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2233467788888888889999999888887665
No 279
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.74 E-value=0.59 Score=46.93 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=121.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh-ccCChhhHHHHHHHHHHhccCCCchHHHHhc
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQGNKARAVRA 268 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 268 (389)
+.+-.-+.+.+..-+..|+..+................|.+..++... .+.+..+...++..|..++..-..-..=...
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 344444556677788888888777665544111111124444444443 3557777888888888887644333333345
Q ss_pred CCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHH
Q 016465 269 GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKI 347 (389)
Q Consensus 269 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~ 347 (389)
+..+.+++.+......+++.++.++..++.... .....+.+...+.+.++.++......+........ .....
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 678899999998888899988888877665211 12356777788889999999887777766555332 22222
Q ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 348 ARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 348 ~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
-.-.+.++.++....+.+.+||..|..++.-+-+
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2223577778888888899999999988876644
No 280
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.70 E-value=0.015 Score=56.83 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=38.0
Q ss_pred CcCcCCcccCcCCeecCCccCccHHHHHHHHhcCC-CCCCCCCccCc
Q 016465 12 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~-~~cp~c~~~~~ 57 (389)
+.|++|.+ ..+++...|||.||+.|+...+.... ..||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 88888899999999999999987533 36999986654
No 281
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.74 Score=44.55 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcC
Q 016465 203 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAG 282 (389)
Q Consensus 203 ~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~ 282 (389)
+...++..+..|-..+..-. .-.|.+..+++...+.+..+|...+..|..+.........-+-.+....+..-+.+..
T Consensus 62 Il~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 33444444444433332222 2246667777777788999999999999999886666666666778888888888899
Q ss_pred cccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHH
Q 016465 283 GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVL 334 (389)
Q Consensus 283 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L 334 (389)
+.|+..|+.+|..+=..+..-. -.++..+..++++. ++++|..|+..+
T Consensus 140 p~VRiqAv~aLsrlQ~d~~dee----~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGDPKDEE----CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred chHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 9999999999998875432211 23677788888874 688988865443
No 282
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.65 E-value=0.18 Score=33.79 Aligned_cols=67 Identities=4% Similarity=-0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCCchHHHHhcCC
Q 016465 204 RENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGI 270 (389)
Q Consensus 204 ~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 270 (389)
.+.|+|++++++..+.....+.+.++++.++++..+ +...+|-.+..+|.-++...+....+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 467999999999988888888778999999999874 4578899999999999998888877776653
No 283
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.025 Score=39.63 Aligned_cols=27 Identities=22% Similarity=0.733 Sum_probs=23.2
Q ss_pred CCccCccHHHHHHHHhcCCCCCCCCCcc
Q 016465 28 STGQTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 28 ~c~h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
.|+|.|.-.||.+|++.+ ..||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr-~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR-NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc-CcCCCcCcc
Confidence 699999999999999974 459998764
No 284
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.46 E-value=0.49 Score=39.03 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-----CChHHHHHHHHHHHhccccc--cccchhcccCChHHHH
Q 016465 121 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----TDPRTQEHAVTALLNLSIND--SNKGTIVNAGAIPDIV 193 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~l~~L~ 193 (389)
...|+..|.-++. .++.+..+.+..+--.+...|.. ..+-+|..++++++.|..++ +....+....++|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 4566666777775 67888888888755555555533 24567889999999998865 3345555678999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh--------CcHHHHH-HHhccCChhhHHHHHHHHHHhccCCCchHH
Q 016465 194 DVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--------GAIPALI-RLLCDGTPRGKKDAATAIFNLSIYQGNKAR 264 (389)
Q Consensus 194 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~--------~~i~~L~-~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~ 264 (389)
+++..+++-.+..|+.++..+..++..-..+.+. ..+..++ +++..+..+..+.++++-..|+.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 9999999888888888888887776654444332 2222222 233445677788888888888877766654
Q ss_pred HH
Q 016465 265 AV 266 (389)
Q Consensus 265 ~~ 266 (389)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 43
No 285
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.46 E-value=1.8 Score=41.99 Aligned_cols=203 Identities=15% Similarity=0.176 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccccccccchhcccCChHHHHH
Q 016465 116 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD 194 (389)
Q Consensus 116 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~ 194 (389)
+|++.+..|.-.|..+..-+.+... .-+|.|+..++ +++|.+|.+|+-.|+.++..-. ..++ ..-.-|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN---~~~d-e~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN---TTAD-EHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh---hhhH-HHHHHHHH
Confidence 5788999999999887654444332 24688999887 6799999999988887653211 1111 12345677
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHH
Q 016465 195 VLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPL 274 (389)
Q Consensus 195 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L 274 (389)
-|.+.+..++..|..++..|... .++.-.|-++.+..+|.++|.++...|-..+..++..+.. +-.|.++..
T Consensus 979 rL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt----~yn~fidif 1050 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT----MYNGFIDIF 1050 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc----hhhhhHHHH
Confidence 77888899999999999987532 2223358888999999999999988888888888764432 223444333
Q ss_pred HHHHhh--cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 275 MRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 275 ~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
..+-.+ ...+--....+.|..+...+..+.++.+. ...++.+.....-....+.++.||-.
T Consensus 1051 s~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~----L~~rl~rc~tq~qwd~~~~~l~nLp~ 1113 (1128)
T COG5098 1051 STLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKES----LFLRLLRCNTQSQWDKLLCSLFNLPD 1113 (1128)
T ss_pred HHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcCCc
Confidence 222222 11112345566666666666665555432 22333344333333444555555443
No 286
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=2.4 Score=41.43 Aligned_cols=157 Identities=22% Similarity=0.167 Sum_probs=94.6
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
+=+.+-+++.+.++-+|...+..+.. +.. --.+.++|..|+.. .++.+.++++.|.-+|+-++..++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~-----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLAL-AYV-----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHH-HHh-----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 33444456666677777666655432 100 00134566777766 5677899999999999987765543
Q ss_pred hhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc--Chhh
Q 016465 226 AAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS--HQEG 302 (389)
Q Consensus 226 ~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~ 302 (389)
..+..+++|. +.++.+|.-++.+|+-.|....++..+ ..|-.+..++..-|+..|+-+++-+.. ++..
T Consensus 589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 3356666765 458999999999999877766555432 333344555666778888877776552 1111
Q ss_pred HHHhhccCChHHHHHHHhcCChH
Q 016465 303 KTAIGQAEPIPVLMEVIRTGSPR 325 (389)
Q Consensus 303 ~~~i~~~~~v~~L~~ll~~~~~~ 325 (389)
...+ .++.+.+.+++.+..++
T Consensus 660 ~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 660 CPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred CchH--HHHHHHHHHHhhhhhhH
Confidence 1111 23445566666554433
No 287
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.37 E-value=0.56 Score=43.22 Aligned_cols=257 Identities=12% Similarity=0.036 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcccc------ccccchhcccCChHH
Q 016465 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN------DSNKGTIVNAGAIPD 191 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~------~~~~~~i~~~g~l~~ 191 (389)
..++.+++..|..++..-.--+..+.+ ....+..-+....+.++..+...+..+... ++..+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 357889999998888654333333332 224444445556889999999888776331 121111111121111
Q ss_pred ------HHHHHc-cCCHHHHHHHHHHHHHhcCCc-----hhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccC
Q 016465 192 ------IVDVLK-NGSMEARENAAATLFSLSVID-----ENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 192 ------L~~lL~-~~~~~~~~~a~~~L~~Ls~~~-----~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~ 258 (389)
.-..+. +..+..+..++.++.+++... +.+. .....+..-.. +.+.-++..|.+++.-+..+
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~-----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ-----TLCITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch-----hhhHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 111111 122345566777777775321 1111 01111111122 22344566777887777777
Q ss_pred CCchHHHH-hcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc-----Chh--hHHHhhccCChHHHHHHHhc---CChHHH
Q 016465 259 QGNKARAV-RAGIVPPLMRFLKDAGGGMVDEALAILAILAS-----HQE--GKTAIGQAEPIPVLMEVIRT---GSPRNR 327 (389)
Q Consensus 259 ~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-----~~~--~~~~i~~~~~v~~L~~ll~~---~~~~~~ 327 (389)
+..+.... -......+...+.+..-..++.+.+.++||+. .+. ...+-+..-.+..+...-.. ..++++
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 76553322 23445556666666777889999999999974 222 22221111122333332222 247889
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHhc-------CcHHHHHH-HHHhCChHHHHHHHHHHHHHHhhHhh
Q 016465 328 ENAAAVLWAICTGDAEQLKIAREL-------DAEEALKE-LSESGTDRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 328 ~~a~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~ 385 (389)
.+|+.+|.|+..- .+.+.+. +.+..+.. ..-.+.-.||=.|..++.||.+++.+
T Consensus 502 ~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 502 SNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred hHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 9999999998762 1212221 22222221 22233567888999999999877654
No 288
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.36 E-value=0.36 Score=38.35 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=82.0
Q ss_pred CHHHHHHHhcCC-ChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHH
Q 016465 147 AIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 225 (389)
Q Consensus 147 ~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~ 225 (389)
.++.|+++|+.+ +..+|..++++|+.|..-++.+.+....+. +.-. -.+.+......... ....+ ...+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l~-~~~~~---~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISLP-MMGIS---PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHHh-hccCC---CchHHHH
Confidence 567888888876 689999999999999776666555332111 1000 01111111111111 11111 1222233
Q ss_pred hhCcHHHHHHHhccCChh-hHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh
Q 016465 226 AAGAIPALIRLLCDGTPR-GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 297 (389)
Q Consensus 226 ~~~~i~~L~~ll~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 297 (389)
-..++..|+..|++.+-. -...++.++.++....+.+..-.-..++|.++..++..++..++..+.-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345678888888876432 233566777777644333332223568899999999877788887766666554
No 289
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.34 E-value=0.26 Score=40.33 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hChhhhHHHHhcCCHHHHHHHhcC---------CChHHHHHHHHHHHh
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAK-RNADNRVCIAEAGAIPLLVELLSS---------TDPRTQEHAVTALLN 172 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~L~~lL~~---------~~~~~~~~a~~~L~~ 172 (389)
......+++.+.+..... ..+..|...-. .+......|++.||+..|+.+|.. .+......++.+|..
T Consensus 65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 355677888887664332 34444443332 233456678888999999999854 245677889999999
Q ss_pred ccccccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 016465 173 LSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLS 215 (389)
Q Consensus 173 l~~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls 215 (389)
|..+..+...+. ..+++..|+..|.+++..++..++.+|..++
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888777666666 5889999999999999999999999998765
No 290
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.33 E-value=0.88 Score=44.00 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=136.2
Q ss_pred hHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 016465 139 RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID 218 (389)
Q Consensus 139 ~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~ 218 (389)
-+.+....+++.|+..+.-++ .-...+..+..+...-.... ...++++.|+++++..+..+|...+.-+-... +
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~ 359 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--D 359 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHHHHHhHHHHh--h
Confidence 344555567777777776654 11122222222222111111 45678999999999999888865554443332 2
Q ss_pred hhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 219 ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 219 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
....++.+..+++.+...+.+.++.+++.++..+..|+..=..+ .+....+..+..+-.+.+..++..-.-+|+.++.
T Consensus 360 ~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 360 HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 23345567789999999999999999999999988876432211 1222233334333344667788888888888876
Q ss_pred Chhh--HHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Q 016465 299 HQEG--KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 299 ~~~~--~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
+... |..+ .+....+-+.+.-...|..++.+++.....-+ ..=+...+++.+.-+.-+.+..+|..|...+
T Consensus 438 ~l~~~~R~~v----L~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 438 HLAASVRKRV----LASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred ccchhhhccc----cchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCcccchhhHHHHHH
Confidence 5322 2222 22233334455545667788877776554321 1112234677777778888888888888777
Q ss_pred HHH
Q 016465 377 ELL 379 (389)
Q Consensus 377 ~~l 379 (389)
+..
T Consensus 511 ~~f 513 (690)
T KOG1243|consen 511 RQF 513 (690)
T ss_pred HHH
Confidence 654
No 291
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=3.5 Score=43.79 Aligned_cols=276 Identities=15% Similarity=0.120 Sum_probs=144.1
Q ss_pred cchhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhhHHHHh--cCCHHHHHHHhcCCChHHHHHHHHHHHhccccc
Q 016465 101 CDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAE--AGAIPLLVELLSSTDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 177 (389)
++.+.|-+.+++-++. .+..+.-|+.-+..++... ++.+.. ...||.|.+.=-+++..++..-..+-..|..++
T Consensus 953 ~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen 953 GQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS 1029 (1702)
T ss_pred CChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh
Confidence 4455555555555443 3445555666666666533 222211 146777777766778888755444444466554
Q ss_pred c-ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh-hCcHHHHHHHhccCChhhHHH---HHHHH
Q 016465 178 S-NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKD---AATAI 252 (389)
Q Consensus 178 ~-~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~---a~~~L 252 (389)
. ..+... ..+++.|+.-|.+....+|+.++-+|..|....+.....-. ...+..+.+...+=.+.+|+. ++.+|
T Consensus 1030 k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~l 1108 (1702)
T KOG0915|consen 1030 KKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARAL 1108 (1702)
T ss_pred HHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223332 34778888888888899999999999999877554322111 134444555444434555554 45566
Q ss_pred HHhccCCCchHHHHh-cCCcHHHHHHHh-----hcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHH
Q 016465 253 FNLSIYQGNKARAVR-AGIVPPLMRFLK-----DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRN 326 (389)
Q Consensus 253 ~~L~~~~~~~~~~~~-~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~ 326 (389)
..|+..--....-.+ ..++..++..|- +.-++++..++.++..|+.+......-.-...++.|+.....-.+.+
T Consensus 1109 sKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1109 SKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHH
Confidence 666531111001011 122334444433 34567888999999999866544222122234455555444333322
Q ss_pred -----------HHHHHHHHHH-HhhcCH--HHHHHHHh-------cCcHHHHHHHHHhC-ChHHHHHHHHHHHHHH
Q 016465 327 -----------RENAAAVLWA-ICTGDA--EQLKIARE-------LDAEEALKELSESG-TDRAKRKAGSILELLQ 380 (389)
Q Consensus 327 -----------~~~a~~~L~~-l~~~~~--~~~~~~~~-------~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~ 380 (389)
..+|+..+.. .+.++| +.....+. ...++.+.++++.+ .-.+|..++.++..|.
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 2334444332 222232 11111111 24577777777766 3455555665555553
No 292
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=1.3 Score=45.06 Aligned_cols=221 Identities=16% Similarity=0.058 Sum_probs=125.5
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHHH
Q 016465 146 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVAI 224 (389)
Q Consensus 146 g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~~ 224 (389)
+++..|++.+++.+..+|..|+..++.++...+ ..+. ..++...++++...+ +..-..++-+|..|+...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 567777888888899999999999999877554 2222 235677777665433 444457788888876432111100
Q ss_pred HhhCcHHHHHHHhccC--------ChhhHHHHHHHHHHhccCCCch--HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHH
Q 016465 225 GAAGAIPALIRLLCDG--------TPRGKKDAATAIFNLSIYQGNK--ARAVRAGIVPPLMRFLKDAGGGMVDEALAILA 294 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~~--------~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 294 (389)
. ..+++.++.-|.-+ ...+|..|+.+++.++...+.. ..++..=.-..|...+.+.+-+++..|..++-
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 0 13445555555422 3578899999999888643322 22222222234555667788888999888887
Q ss_pred HHhcChhhHHHhhccCChHHHHHHHhcC---ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHH-HHhCChHHHH
Q 016465 295 ILASHQEGKTAIGQAEPIPVLMEVIRTG---SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKEL-SESGTDRAKR 370 (389)
Q Consensus 295 ~l~~~~~~~~~i~~~~~v~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~ 370 (389)
...+.- |-++.=+.++.+. +-..+.++-..|..-....+.+.+.+.+. |+.- +.+=|+.+|+
T Consensus 497 E~VGR~---------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 497 ENVGRQ---------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHhccC---------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHHH
Confidence 655421 1111111122222 22234444444443333333344333222 2211 3344899999
Q ss_pred HHHHHHHHHHhhHh
Q 016465 371 KAGSILELLQRIDM 384 (389)
Q Consensus 371 ~a~~~L~~l~~~~~ 384 (389)
.+++.|..|+...+
T Consensus 563 laa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEP 576 (1133)
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999876643
No 293
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.0062 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=32.3
Q ss_pred CCcCcCCcccCcCCeecCCccCc-cHHHHHHHHhcCCCCCCCCCccC
Q 016465 11 DFRCPISLELMKDPVIVSTGQTY-ERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~-c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
+..|.||++..+|-++|+|||.. |-.|=.+ -..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 67899999999999999999953 5555332 23699999764
No 294
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.55 Score=43.38 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=88.9
Q ss_pred cCChHHHHHHH----ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh-ccCChhhHHHHHHHHHHhccCCC
Q 016465 186 AGAIPDIVDVL----KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 186 ~g~l~~L~~lL----~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
.|.+..++..+ .+++...+..|++.|.+.+..-+.+..-.....+..++.-| ...+.++...++.+|..+...-.
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 34444444444 46778899999999999987733222222233444444444 34467888888888887764333
Q ss_pred chH-HHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh--hhHHHhhc--cCChHHHHHHHhcCChHHHHHHHHHHH
Q 016465 261 NKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ--EGKTAIGQ--AEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 261 ~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~--~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
+.. ...--++.-.+..+..+.+++.+..|..+++.|+... ..+..+.+ .+...+++-.|++.++.+- .|++...
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~ 411 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSEL 411 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHH
Confidence 221 1111233445667778889999999988888887433 23333332 2334455555566665442 3444444
Q ss_pred HHhh
Q 016465 336 AICT 339 (389)
Q Consensus 336 ~l~~ 339 (389)
..+.
T Consensus 412 ~~c~ 415 (533)
T KOG2032|consen 412 RTCY 415 (533)
T ss_pred HhcC
Confidence 4443
No 295
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.04 E-value=0.046 Score=46.73 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=37.2
Q ss_pred CCCCCCcCcCCcccCcC---CeecCCccCccHHHHHHHHhcCC--CCCCCCCc
Q 016465 7 VIPDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGH--KTCPKTQQ 54 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~~~---pv~~~c~h~~c~~ci~~~~~~~~--~~cp~c~~ 54 (389)
....-|+||+-.+.-.+ |+.+.|||..-+..+.+.-.+|. |.||-|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34455999999887754 88999999999998877666543 67999954
No 296
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.98 E-value=3.5 Score=37.25 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=114.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHh-hChhhhHHHHhc-C-CHHHHHHHhcCC-----C--------hHHHHHHHHH
Q 016465 106 IDALLGKLANGNVEEQRAAAGELRLLAK-RNADNRVCIAEA-G-AIPLLVELLSST-----D--------PRTQEHAVTA 169 (389)
Q Consensus 106 i~~l~~~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~-g-~v~~L~~lL~~~-----~--------~~~~~~a~~~ 169 (389)
++.+-+.|++........+++.|..++. ++......+.+. + -.+.|.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777788888888888899999999987 665655555554 3 355677776431 1 2888888888
Q ss_pred HHhccc--cccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHH-hcCCc----hhhHHHHhhCcHHHHHHHhccCC
Q 016465 170 LLNLSI--NDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFS-LSVID----ENKVAIGAAGAIPALIRLLCDGT 241 (389)
Q Consensus 170 L~~l~~--~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~-Ls~~~----~~~~~~~~~~~i~~L~~ll~~~~ 241 (389)
+..+.. +...+..+. ..+.+..+.+-|..+++++....+.+|.. +..++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777654 345565555 56778899999999889998888888885 33332 34556667788899999877666
Q ss_pred h----hhHHHHHHHHHHhccCCCc
Q 016465 242 P----RGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 242 ~----~~~~~a~~~L~~L~~~~~~ 261 (389)
+ .+...+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 7888888999999876553
No 297
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.90 E-value=4.1 Score=35.67 Aligned_cols=219 Identities=14% Similarity=0.086 Sum_probs=150.2
Q ss_pred HHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccc-ccc----chhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 016465 141 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNK----GTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSL 214 (389)
Q Consensus 141 ~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~----~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~L 214 (389)
.+.++|.+..|+..+...+.+.+..++.+..++-... ..+ +.+. ....+..|++--.+ .+++...+-..+...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 4567899999999999988888999988888875432 222 2222 23334444433111 366666666666666
Q ss_pred cCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-chHHHHhcCC----cHHHHHHHhhcCcccHHHH
Q 016465 215 SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGI----VPPLMRFLKDAGGGMVDEA 289 (389)
Q Consensus 215 s~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~----i~~L~~ll~~~~~~~~~~a 289 (389)
...+.-...+..+.-+......+..+.-++...|......+..... ....+...+. .+.--.++.+.+.-.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 6666666667777888888888888888888889988887665433 3344444332 2335556777888889999
Q ss_pred HHHHHHHhcChhhHHHh----hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC---HHHHHHHHhcCcHHHHHHHHH
Q 016465 290 LAILAILASHQEGKTAI----GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD---AEQLKIARELDAEEALKELSE 362 (389)
Q Consensus 290 ~~~L~~l~~~~~~~~~i----~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~ll~ 362 (389)
..+|+.+-....+...+ .+...++.++.+|+..+..+|..|..+-+-...+. ......++++. +.|++++.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l~ 310 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELLH 310 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHHH
Confidence 99999998776665444 33567999999999999999999999998887764 23444455442 45666554
No 298
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.73 E-value=0.079 Score=46.37 Aligned_cols=60 Identities=17% Similarity=0.348 Sum_probs=45.1
Q ss_pred CCCCCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCccHHHHHHHHHH
Q 016465 8 IPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 74 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~n~~~~~~i~~~ 74 (389)
..+.+.||+|.+.+.-|+. -.-||.-|-.|=.+- ...||.|+.++.+ ..+..+.+.++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence 5567899999999999985 557999999997543 3469999988752 2456666666654
No 299
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.69 E-value=0.019 Score=46.99 Aligned_cols=47 Identities=26% Similarity=0.495 Sum_probs=36.6
Q ss_pred CCcCcCCcc-cCcCCee----cC-CccCccHHHHHHHHhcCCCCCC--CCCccCc
Q 016465 11 DFRCPISLE-LMKDPVI----VS-TGQTYERSCIQKWLDAGHKTCP--KTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~-~~~~pv~----~~-c~h~~c~~ci~~~~~~~~~~cp--~c~~~~~ 57 (389)
+-.||+|.. -+-+|-+ .| |-|..|.+|+.+.|..|...|| -|+..+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 457999993 5555532 25 9999999999999999999999 4765554
No 300
>PRK14707 hypothetical protein; Provisional
Probab=93.54 E-value=9.4 Score=42.34 Aligned_cols=268 Identities=16% Similarity=0.110 Sum_probs=137.4
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHh-ccccccccch
Q 016465 106 IDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLN-LSINDSNKGT 182 (389)
Q Consensus 106 i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~-l~~~~~~~~~ 182 (389)
+..+++.++ .++..-...++..|.......+..+..+-.. +|..++.-++. ++..-.+.|+..|.. ++.++..+..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q-~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQ-GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Confidence 444454443 2222233444444444433344555555333 44444454444 444444455555554 5555444444
Q ss_pred hcccCChHHHHHHHcc-CCHHHHHHHHH-HHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHH-hccCC
Q 016465 183 IVNAGAIPDIVDVLKN-GSMEARENAAA-TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQ 259 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~-~~~~~~~~a~~-~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~-L~~~~ 259 (389)
+ +...+...++.|.. ++...-..++. +-..++....-+..+-..++-..|-.+-+-.+..+-..|+..|.. |..+.
T Consensus 244 ~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 244 L-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred C-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 4 34456666666654 34434344443 444455433333333322332233333334566666666655554 54433
Q ss_pred CchHHHHhcCCcHHHHHHHhh-cCcccHHHHH-HHHHHHhcChhhHHHhhccCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 016465 260 GNKARAVRAGIVPPLMRFLKD-AGGGMVDEAL-AILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWA 336 (389)
Q Consensus 260 ~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~-~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~ 336 (389)
+- .+-.+...+..+++-|.. ++..+...|+ .+-..++..++.++.+--. ++..+++-+.. .+......|+..|..
T Consensus 323 ~l-~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 323 EL-CKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAE 400 (2710)
T ss_pred hh-hhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 32 233444455555666655 5555555544 4445677877777766543 45555555544 555666666666665
Q ss_pred HhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Q 016465 337 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 377 (389)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~ 377 (389)
=..++++..+.+--.|+-..|=.+.+=++..+...++..|.
T Consensus 401 ~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 401 HVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred HhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 55566677766666666555555666667776666665553
No 301
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.50 E-value=4.6 Score=35.01 Aligned_cols=213 Identities=16% Similarity=0.113 Sum_probs=123.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC--CChHHHHHHHHHHHhccccccccchhcc
Q 016465 108 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN 185 (389)
Q Consensus 108 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 185 (389)
.|=..|.+.|+..|.+|+..|......-+... ....-+..|+....+ .|......++.++..|...... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----S 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----C
Confidence 35577889999999999999998876544321 222334555555543 3455555567777766633221 1
Q ss_pred cCChHHHHHHH-cc-----CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhcc-CChhhHHHHHHHHHHhccC
Q 016465 186 AGAIPDIVDVL-KN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 186 ~g~l~~L~~lL-~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~ 258 (389)
.+....+++.+ ++ -....|..+..++..|.......-.-...+.+..+++.+.. .|++-...+...+..+...
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 11233333333 22 13456777788888776443221121234678888888864 4788777777777766543
Q ss_pred CCchHHHHhcCCcHHHHHHHhh-------c---Cc-c-cHHHHHHHHHH-HhcChhhHHHhhccCChHHHHHHHhcCChH
Q 016465 259 QGNKARAVRAGIVPPLMRFLKD-------A---GG-G-MVDEALAILAI-LASHQEGKTAIGQAEPIPVLMEVIRTGSPR 325 (389)
Q Consensus 259 ~~~~~~~~~~~~i~~L~~ll~~-------~---~~-~-~~~~a~~~L~~-l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~ 325 (389)
-+ . ....+.+.+.+.. + ++ . .++.-...|.+ ++.++.- ..-+++.|++-|.+.++.
T Consensus 155 ~~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 155 FD-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPS 223 (262)
T ss_pred cc-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcH
Confidence 33 1 3334445554432 1 11 1 23333333433 3443322 224789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 016465 326 NRENAAAVLWAICT 339 (389)
Q Consensus 326 ~~~~a~~~L~~l~~ 339 (389)
++..++.+|...+.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987655
No 302
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.16 Score=41.20 Aligned_cols=49 Identities=12% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCcCcCCcccC--cCCeecCCccCccHHHHHHHHhc-------CCCCCCCCCccCcCC
Q 016465 11 DFRCPISLELM--KDPVIVSTGQTYERSCIQKWLDA-------GHKTCPKTQQTLLHT 59 (389)
Q Consensus 11 ~~~Cpic~~~~--~~pv~~~c~h~~c~~ci~~~~~~-------~~~~cp~c~~~~~~~ 59 (389)
.-.|.+|.-.+ .|.+-+-|-|.|...|+.+|-.. .+..||.|.+++.+.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 34699999877 46667899999999999999874 234799999886543
No 303
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.41 E-value=0.92 Score=46.47 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=102.4
Q ss_pred cHHHHHHHhcc----CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh-hcCcccHHHHHHHHHHHhcChhhH
Q 016465 229 AIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGK 303 (389)
Q Consensus 229 ~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~ 303 (389)
+.|.++...++ +++.++..|.-+|+.+..-+ ..+.+ .-++.|+..|. ++++.++.+++-+++.++..-++-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 44555555543 36888888888888775322 11222 34678888887 588999999999999888543322
Q ss_pred HHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 304 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 304 ~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
-+ -.-+.|...|++.++.+|..|+.+|.+|...+ .+.-.|.+..+..++.+++++++..|....+.|+
T Consensus 996 ie----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 996 IE----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 11 24567888889999999999999999998865 3444689999999999999999999996665554
No 304
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.35 E-value=0.032 Score=53.64 Aligned_cols=66 Identities=21% Similarity=0.487 Sum_probs=47.9
Q ss_pred CCCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCCCccCcCCCCCccHHHHHHHHH
Q 016465 8 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTALTPNYVLKSLIAL 73 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~~~~~~~n~~~~~~i~~ 73 (389)
+..++.||+|.....+|+.+.|.|.||+.|+-.-|.. +...||+|+.........-.....+++++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 3456899999999999999999999999999877753 34579999866554433333334444443
No 305
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.20 E-value=3 Score=35.50 Aligned_cols=130 Identities=16% Similarity=0.045 Sum_probs=82.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHH
Q 016465 113 LANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDI 192 (389)
Q Consensus 113 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L 192 (389)
-+..+++.+...+..|..++.++... ..-++..|..+...+..+.+..+.+.+..+....+-.- +.+..+
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~ 79 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPL 79 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHH
Confidence 34567889999999999999755111 11245666677777766666677777766654322111 344444
Q ss_pred HHHH--------c--cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh-ccCChhhHHHHHHHHHHhc
Q 016465 193 VDVL--------K--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 193 ~~lL--------~--~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~L~ 256 (389)
+..+ . +...+.....+..+..++...+. .....++.+..++ .+.++.++..++.+|..|+
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4441 1 11234455556677777765554 2235677888888 6778888889999999998
No 306
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.10 E-value=0.6 Score=44.58 Aligned_cols=99 Identities=25% Similarity=0.366 Sum_probs=60.6
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 181 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 181 (389)
...++..++.+....|..+|..|++.|..++.++++....+ +..|+++|..+++.....+-.+|..|...+
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---- 127 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD---- 127 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC----
Confidence 56789999999999999999999999999999877665554 489999999987766666555655543211
Q ss_pred hhcccCChHHHHHHHc---cCCHHHHHHHHHHHH
Q 016465 182 TIVNAGAIPDIVDVLK---NGSMEARENAAATLF 212 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~---~~~~~~~~~a~~~L~ 212 (389)
..+.+..+...+. ++++.+++.++..|.
T Consensus 128 ---~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 ---PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1233444444443 445556666665553
No 307
>PRK14707 hypothetical protein; Provisional
Probab=93.05 E-value=14 Score=41.19 Aligned_cols=264 Identities=15% Similarity=0.053 Sum_probs=140.9
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHh-ccccccccc
Q 016465 104 AAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKG 181 (389)
Q Consensus 104 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~ 181 (389)
..|..+++.++ -++......|+..|.....+....+..+-..|+-..|-.+-+-.+......++..|.. ++.+...++
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444443 3444445556666655444344444444444444444444444566566666666654 665555555
Q ss_pred hhcccCChHHHHHHHcc-CCHHHHH-HHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHH-Hhcc
Q 016465 182 TIVNAGAIPDIVDVLKN-GSMEARE-NAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIF-NLSI 257 (389)
Q Consensus 182 ~i~~~g~l~~L~~lL~~-~~~~~~~-~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~-~L~~ 257 (389)
.+-.. -+...++-|+. ++..+-. .+..+...|..+.+.+..+ +.-.+...++-|. =.+..+-..|+.+|. .|+.
T Consensus 285 al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 ALDPI-NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 54433 34445555543 4444444 4444444555544443333 2333344444443 244444455555554 4555
Q ss_pred CCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHH-HHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 016465 258 YQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILA-ILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 335 (389)
Q Consensus 258 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~ 335 (389)
+++-+..+ +..++..+++.+.. ++..+...|+..|. .+..+++.+..+-..|+-..|-.+-+=.+..+...++..|.
T Consensus 363 d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 363 DPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred CHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 55444433 34455666666655 77777777666665 56677777777655544444444434467777778888887
Q ss_pred HHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHH
Q 016465 336 AICTGDAEQLKIARELDAEEALKELSESGTDRAKR 370 (389)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 370 (389)
.-..++.+.++.+--.++...|-.+.+=+|..+..
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 76667777776665555555554555555555443
No 308
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.02 E-value=0.34 Score=34.30 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=56.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~ 175 (389)
...+..+..+.++.+.+|-+++..|..+..... ....-..+++..+...|+++++-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778888888889999999999999997554 1222234678888999999999999999999988874
No 309
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.076 Score=43.98 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=39.1
Q ss_pred CCCCcCcCCcccCcCCee----cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC
Q 016465 9 PDDFRCPISLELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 61 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~----~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~ 61 (389)
...|.|||.+-.|..-.. -+|||.|-.+.+.+.- ...|++|+.....++.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 455999999999987552 4799999888777763 4579999999876653
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=0.052 Score=52.94 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=34.7
Q ss_pred CCcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCc
Q 016465 11 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQ 54 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~ 54 (389)
.-+|..|...+.-|++ ..|||.|.+.|++ .+...||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3589999999999986 7899999999998 35678999975
No 311
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=92.90 E-value=4.4 Score=36.83 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-----ChHHHHHHHHHHHhccc-cccccchhc-ccCCh
Q 016465 117 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSI-NDSNKGTIV-NAGAI 189 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~i~-~~g~l 189 (389)
|.++..+++++|.|+..+++..+..+.+......+++.+... ..++...=++.|.-+.. ....|.++. +.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 467899999999999999999999999988877777776432 12233334444544433 335555554 67889
Q ss_pred HHHHHHHccC---------C------HHHHHHHHHHHHHhcCCc
Q 016465 190 PDIVDVLKNG---------S------MEARENAAATLFSLSVID 218 (389)
Q Consensus 190 ~~L~~lL~~~---------~------~~~~~~a~~~L~~Ls~~~ 218 (389)
+.+.++|.+. + .+....++.+++|+....
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999999642 1 123456667777776543
No 312
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.17 Score=45.33 Aligned_cols=45 Identities=20% Similarity=0.514 Sum_probs=32.9
Q ss_pred CCCcCcCCcccCcC--C-eecCCccCccHHHHHHHHhc----CCC---CCCCCCc
Q 016465 10 DDFRCPISLELMKD--P-VIVSTGQTYERSCIQKWLDA----GHK---TCPKTQQ 54 (389)
Q Consensus 10 ~~~~Cpic~~~~~~--p-v~~~c~h~~c~~ci~~~~~~----~~~---~cp~c~~ 54 (389)
..|.|.||.+...- - +.+||+|.||+.|...|+.. |.. .||.+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34889999986533 2 35899999999999999972 222 5777543
No 313
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.85 E-value=7.7 Score=35.71 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHHhccccccccchhccc---CChHHHHHHHccCC--HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHH
Q 016465 159 DPRTQEHAVTALLNLSINDSNKGTIVNA---GAIPDIVDVLKNGS--MEARENAAATLFSLSVIDENKVAIGAAGAIPAL 233 (389)
Q Consensus 159 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~---g~l~~L~~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L 233 (389)
+..+..+|+++|+.+..+++.-..+-+. -++...+..+.+++ ..+....+++|..=. ....+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~----f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK----FSPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----CCCcccchhhHHHH
Confidence 5678889999999987776555554432 14566666665543 345555566665322 12223334445555
Q ss_pred HHHhc-----cCChhhHHHHHHHHHHhccCCCchHHHHh--cCCcHHHHHHHhhcCcccHHHHHHHHHHHh
Q 016465 234 IRLLC-----DGTPRGKKDAATAIFNLSIYQGNKARAVR--AGIVPPLMRFLKDAGGGMVDEALAILAILA 297 (389)
Q Consensus 234 ~~ll~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 297 (389)
+..+. -++..+..+.+.++.+|....+ ..|.+ .-.++.++..+.+....++..|..++..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p--~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFP--QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 55543 2355677788888888876543 33443 236888888888888888888877776665
No 314
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=2.1 Score=40.60 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=68.6
Q ss_pred cCCHHHHHHH-hcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhH
Q 016465 145 AGAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKV 222 (389)
Q Consensus 145 ~g~v~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~ 222 (389)
.|++..|+.. .++.+.++|+.|+-+|+-++.+ +...+...+++|. +.+.-++...+.+|+-.+.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3566666666 5667888999998888776643 2445667777775 4578888888888887765543322
Q ss_pred HHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 016465 223 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 257 (389)
Q Consensus 223 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~ 257 (389)
++..|-.+..+.+.-+|..|+-++..+..
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 34556666677777788888888776653
No 315
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=3.4 Score=39.26 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=82.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHH-hccCChhhHHHHHHHHHHhccCCCchHHHHhcC
Q 016465 191 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSIYQGNKARAVRAG 269 (389)
Q Consensus 191 ~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 269 (389)
.+-+++.+.++-+++..+..+..--. --.+.|++..+++. +++.+.+++..|.-+|+-+|..+. .
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~------GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~ 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYV------GTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------D 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHh------cCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------c
Confidence 34455666666666655554432100 01234677888887 677889999999999998876543 4
Q ss_pred CcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhh
Q 016465 270 IVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 270 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~ 339 (389)
.+...+++|.. .+..++...+.+|+-.|.....+. ++..|-.++.+.++-+|+.|+-++..+..
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 55666777766 455666666666665554332221 34555566677778889888888877654
No 316
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.39 E-value=1.6 Score=34.97 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcC--CHHHHHHHhcCC-ChHHHHHHHHHHHhccc----
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG--AIPLLVELLSST-DPRTQEHAVTALLNLSI---- 175 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~---- 175 (389)
...+..+.++|++.+++.+..++..+...+..++ .+.+.+.+ .+..++++|+.. ...+.+.++.+|..|..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3566778888889999999999999998887542 35554543 688899999885 45677888888877643
Q ss_pred cccccchhcc---cCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 016465 176 NDSNKGTIVN---AGAIPDIVDVLKNGSMEARENAAATLFSLS 215 (389)
Q Consensus 176 ~~~~~~~i~~---~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls 215 (389)
.++..+.+.. .++++.++.++++ ......++.+|..+-
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3343444442 3466666676664 445556666666654
No 317
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.37 E-value=3.7 Score=40.74 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=86.4
Q ss_pred CHHHHHHHhcC----CChHHHHHHHHHHHhccccc----------cccchhcccCChHHHHHHHc----cCCHHHHHHHH
Q 016465 147 AIPLLVELLSS----TDPRTQEHAVTALLNLSIND----------SNKGTIVNAGAIPDIVDVLK----NGSMEARENAA 208 (389)
Q Consensus 147 ~v~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~----------~~~~~i~~~g~l~~L~~lL~----~~~~~~~~~a~ 208 (389)
.+..+..+++. .++.++..|+.+++.+...- ..........+++.+...|. .++.+.+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34555566654 35667777887777775421 11122223346666666665 45667888899
Q ss_pred HHHHHhcCCchhhHHHHhhCcHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh--cCc
Q 016465 209 ATLFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGG 283 (389)
Q Consensus 209 ~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~ 283 (389)
.+|+|+.. ...++.+..++... +..+|..|+++|..+..... ..+.+.|..++.+ .+.
T Consensus 512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-------~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-------EKVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-------HHHHHHHHHHHH-TTS-H
T ss_pred HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-------HHHHHHHHHHhcCCCCCh
Confidence 99999852 34667777777665 67788899999887744321 1234567777766 445
Q ss_pred ccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC-ChHHHHH
Q 016465 284 GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNREN 329 (389)
Q Consensus 284 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~ 329 (389)
++|..|+.+|... .|.. ..+..+...+... +.++...
T Consensus 575 EvRiaA~~~lm~~--~P~~-------~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 575 EVRIAAYLILMRC--NPSP-------SVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHHHHHHHHHT-----H-------HHHHHHHHHHTT-S-HHHHHH
T ss_pred hHHHHHHHHHHhc--CCCH-------HHHHHHHHHHhhCchHHHHHH
Confidence 5666666555432 2211 2455555666443 3454433
No 318
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.14 E-value=1.7 Score=43.04 Aligned_cols=165 Identities=23% Similarity=0.187 Sum_probs=90.9
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHHHhhCcHHHHHHHhcc----CChhhHHHHHHHHHHhcc---
Q 016465 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIFNLSI--- 257 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~--- 257 (389)
..+..+.+++.++.... ..++.+|..|... .+. ...+..+..+++. .++.++..|+.+++.+..
T Consensus 395 ~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 35667777777654322 2244445544322 122 2344566666653 345677777777766653
Q ss_pred -CC------CchHHHHhcCCcHHHHHHHhh----cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC---C
Q 016465 258 -YQ------GNKARAVRAGIVPPLMRFLKD----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG---S 323 (389)
Q Consensus 258 -~~------~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~---~ 323 (389)
.. ......+...+++.+...+.. .+.+.+..++.+|+|+... ..++.|..++... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccc
Confidence 21 111222334456667766653 4556777889999998642 2566777777655 5
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHH
Q 016465 324 PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSIL 376 (389)
Q Consensus 324 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L 376 (389)
..+|..|+++|..++...++. +.+.|+.++.+. +.++|..|..+|
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 788999999999887766533 345566666654 466777665444
No 319
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.11 E-value=2.8 Score=36.60 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccC--ChHHHHHHHcc----CCHHHHHHHHHHHHHhcCCchhh
Q 016465 148 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKN----GSMEARENAAATLFSLSVIDENK 221 (389)
Q Consensus 148 v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g--~l~~L~~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~ 221 (389)
...+.+++.....+-+--++.++.-++.++..-..+...+ ....+..++.. ..+..+..+++++.|+-.....+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3555566666556667777778777777666555554322 34455555543 35677888999999999888777
Q ss_pred HHHHhh-C-cHHHHHHHhccC----ChhhHHHHHHHHHHhccCCC-ch-HHHHhcCCcHHHHHHHhh--cCcccHHHHHH
Q 016465 222 VAIGAA-G-AIPALIRLLCDG----TPRGKKDAATAIFNLSIYQG-NK-ARAVRAGIVPPLMRFLKD--AGGGMVDEALA 291 (389)
Q Consensus 222 ~~~~~~-~-~i~~L~~ll~~~----~~~~~~~a~~~L~~L~~~~~-~~-~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~ 291 (389)
..+... + .+-..+..+... +..++..++.++.|++..-. .+ ..-.....+..+++.+.. .+++....++-
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 776654 3 344444444333 67788888999999874211 00 000111234455553332 67888999999
Q ss_pred HHHHHhcChhhHHHhhcc-CChHHHHHHHhc-CChHHHHHH
Q 016465 292 ILAILASHQEGKTAIGQA-EPIPVLMEVIRT-GSPRNRENA 330 (389)
Q Consensus 292 ~L~~l~~~~~~~~~i~~~-~~v~~L~~ll~~-~~~~~~~~a 330 (389)
+|+++...+......... |+-..+...-.. ..+++++.+
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 999999777666666553 333333333322 345555544
No 320
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.10 E-value=1.1 Score=34.78 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=62.5
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhh
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 382 (389)
.++..|.+-|.+.++.++..|+.+|-.+..+. ......+.+..++..|..++.. .+..|+.++..++...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 36778888888899999999999999998875 4567788888999999999988 6899999999999887643
No 321
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.09 E-value=9.2 Score=37.59 Aligned_cols=204 Identities=19% Similarity=0.115 Sum_probs=106.8
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccc----cchhc---ccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC--
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSN----KGTIV---NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-- 217 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~----~~~i~---~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-- 217 (389)
.+-.|+++|+.-+.+-.+....-+.. .. ... .+.+. ....+..+.+.+.++..... .++.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 45566666666544444443333322 11 111 22222 23466677777776542221 222222222111
Q ss_pred chhhHHHHhhCcHHHHHHHhccC----ChhhHHHHHHHHHHhcc----CCCchHHHHhcCCcHHHHHHHhh----cCccc
Q 016465 218 DENKVAIGAAGAIPALIRLLCDG----TPRGKKDAATAIFNLSI----YQGNKARAVRAGIVPPLMRFLKD----AGGGM 285 (389)
Q Consensus 218 ~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~i~~L~~ll~~----~~~~~ 285 (389)
.+. ...+..+..++.++ ...++..++.+++++.. +.+.....+-...++.+.+.|.. .+.+.
T Consensus 389 ~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 111 23456777777654 34556666666666543 22222122233456666666644 34445
Q ss_pred HHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh-c--CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHH
Q 016465 286 VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-T--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE 362 (389)
Q Consensus 286 ~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~-~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 362 (389)
+...+.+|+|+.... .+..+..++. . .+..+|..|+++|..++...+.. +-+.|+.++.
T Consensus 463 ~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHc
Confidence 566788888876532 4555566665 2 24678999999999888654433 3345566655
Q ss_pred hC--ChHHHHHHHHHHH
Q 016465 363 SG--TDRAKRKAGSILE 377 (389)
Q Consensus 363 ~~--~~~~~~~a~~~L~ 377 (389)
+. ++++|..|..+|-
T Consensus 525 n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 525 NRAEPPEVRMAAVLVLM 541 (574)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 54 5667776665543
No 322
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.03 E-value=0.24 Score=38.25 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=35.4
Q ss_pred CCCCCcCcCCcccCcCCeecCCccC-----ccHHHHHHHHhc-CCCCCCCCCccCc
Q 016465 8 IPDDFRCPISLELMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLL 57 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~pv~~~c~h~-----~c~~ci~~~~~~-~~~~cp~c~~~~~ 57 (389)
-..+..|-||++--. +...||... ..++|+++|... +...||.|+.+..
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 355678999998754 334565432 379999999985 4568999987764
No 323
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=14 Score=36.54 Aligned_cols=274 Identities=14% Similarity=0.058 Sum_probs=140.1
Q ss_pred hHHHHHHHhhcC-----C---CHHHHHHHHHHHHHHHh--hChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhc
Q 016465 104 AAIDALLGKLAN-----G---NVEEQRAAAGELRLLAK--RNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 173 (389)
Q Consensus 104 ~~i~~l~~~l~~-----~---~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l 173 (389)
|.++.++..|.. + ++.-.+-|++.+.++.. .......-+.+.=+++.++..+++...-++..|+..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 556666666631 1 23344556666666543 1112222233333456666666777777888999999888
Q ss_pred cccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh--CcHHHHHHHhccCChhhHHHHHHH
Q 016465 174 SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATA 251 (389)
Q Consensus 174 ~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~ 251 (389)
. .+.++.-.-..+.+...+.+++++-.++..|+-++.-+-.++.....+.++ +..+.|+.+-+.-+.++....+..
T Consensus 488 e--eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 488 E--EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred H--HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 3 333333333446778888888888888999999998887766555554433 455555555444444444444433
Q ss_pred HH-HhccC-CCchHHHHh---cCCcHHHHHHHhhc------CcccHHHHHHHHHHHhc---ChhhHHHhhc---cCChHH
Q 016465 252 IF-NLSIY-QGNKARAVR---AGIVPPLMRFLKDA------GGGMVDEALAILAILAS---HQEGKTAIGQ---AEPIPV 314 (389)
Q Consensus 252 L~-~L~~~-~~~~~~~~~---~~~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~---~~~~~~~i~~---~~~v~~ 314 (389)
+. ..+.. .+-...++. ...+....+++..+ .++-+..|.++|..+.+ .-+++..+.+ ....+.
T Consensus 566 fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypv 645 (970)
T COG5656 566 FVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPV 645 (970)
T ss_pred HHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 22211 011111111 12222333333332 12334556666665543 2223332222 223444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHh
Q 016465 315 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTD-RAKRKAGSILELLQR 381 (389)
Q Consensus 315 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~~~~~a~~~L~~l~~ 381 (389)
+--.+.+.-.+.-.+|+.+|-+.+....+.-..+ -|+.+.|.+++.+... .--+.+.-++.++--
T Consensus 646 i~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 646 ISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 4444555556777788888877665433222111 1344444444444432 344556666666543
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=1.5 Score=43.67 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=83.4
Q ss_pred HHHHhcCCcHHHHHHHhh--------cCcccHHHHHHHHHHHhcChhhHHHhhcc--------CChHHHHHHHhc----C
Q 016465 263 ARAVRAGIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEGKTAIGQA--------EPIPVLMEVIRT----G 322 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--------~~v~~L~~ll~~----~ 322 (389)
..+.+.+++..++++... +..+...+|+.+|.-+...+..+.+++.. .++..+++.-.. .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 445566777777777654 22456778888888888888888777531 244444444322 3
Q ss_pred ChHHHHHHHHHHHHHhhcCHH-----------------------------------HHHHHHhcCcHHHHHHHHHhCC--
Q 016465 323 SPRNRENAAAVLWAICTGDAE-----------------------------------QLKIARELDAEEALKELSESGT-- 365 (389)
Q Consensus 323 ~~~~~~~a~~~L~~l~~~~~~-----------------------------------~~~~~~~~~~~~~L~~ll~~~~-- 365 (389)
+++++..|+.+|.|+....|+ ....+..+++|..|+.|++-..
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 688999999999997654321 1123345688999999998642
Q ss_pred ---hHHHHHHHHHHHHHHhhHhh
Q 016465 366 ---DRAKRKAGSILELLQRIDMA 385 (389)
Q Consensus 366 ---~~~~~~a~~~L~~l~~~~~~ 385 (389)
..+|..|..+|--|++++++
T Consensus 755 t~aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcHH
Confidence 46888899999888877654
No 325
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.62 E-value=6.3 Score=38.17 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhHHHHh---cCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcc--cCChHH
Q 016465 117 NVEEQRAAAGELRLLAKRNADNRVCIAE---AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN--AGAIPD 191 (389)
Q Consensus 117 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~l~~ 191 (389)
.++.+.-|+..|+.+..+...+-..+-. ...+..++..+. .++..+-.++++|.|+..++..++.+.. ...+..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 3556777888888777655443322221 124445555554 4577788999999999888666665553 223333
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHHHhhCcHHHHHHHhcc-----CChhhHHHHHHHHHHhccCCCchHH
Q 016465 192 IVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLLCD-----GTPRGKKDAATAIFNLSIYQGNKAR 264 (389)
Q Consensus 192 L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~L~~~~~~~~~ 264 (389)
+...=..++..++...+....|++.. ..+- +.+..+.+...+.. ++.+.....+.||++|+..+....+
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 33333334455555555555554421 1110 13444444444432 2334556778899999999888888
Q ss_pred HHhcCCcHHHHHHHhh
Q 016465 265 AVRAGIVPPLMRFLKD 280 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~ 280 (389)
+...-.+..+++-+.+
T Consensus 712 ~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 8887777888877766
No 326
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.58 E-value=0.059 Score=39.70 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=28.2
Q ss_pred CCCCCCCcCcCCcccCcCCee--cCCccCccHHHHH
Q 016465 6 PVIPDDFRCPISLELMKDPVI--VSTGQTYERSCIQ 39 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~--~~c~h~~c~~ci~ 39 (389)
..+.++-.|++|++.+.++++ .||||.|...|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 346777889999999987764 6999999999975
No 327
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=91.56 E-value=0.14 Score=41.89 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=43.1
Q ss_pred CcCcCCcccCcCCee-cCCccCccHHHHHHHHhc-CCCCCCC--CCccCcCCCCCccHHHH
Q 016465 12 FRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVLK 68 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~-~~~~cp~--c~~~~~~~~~~~n~~~~ 68 (389)
.+|||+.+...-|+. ..|+|-|.+.-|..++.. ..+.||. |.+......+.-++.+.
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE 250 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILE 250 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHH
Confidence 689999999998986 579999999999999872 3456888 76666555555555443
No 328
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.42 E-value=1.8 Score=33.56 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=62.2
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 175 (389)
..+++..+.+.|++.++.++..|+..|-.+.... ......+...+++..|.+++.. .++.++..++..+.+-+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999874 4567778888999999999974 578899999988877653
No 329
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.41 E-value=8.9 Score=33.25 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=95.1
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--------hhHHHHhhCcHHHHHHHhccCC----hhhHHHHHHHHHH
Q 016465 187 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--------NKVAIGAAGAIPALIRLLCDGT----PRGKKDAATAIFN 254 (389)
Q Consensus 187 g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~--------~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~ 254 (389)
|.-+.+++-|.+. ...+.+..+|..|...++ .+-.+.-.+.+|.+++-+.+++ ......++..|..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3333344444443 334456667776654322 2223333467777777777665 1344566677777
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcC--hhhHHHhhccCChHHHHHHHhcCChHHHHHHH
Q 016465 255 LSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 331 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~ 331 (389)
++...+ .+.+..++..... .........-.+...|+.. ++. +...+..|++++.++.+.++...+
T Consensus 142 ~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 142 VAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-----EFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCcHHHHHHHH
Confidence 763211 1122233333222 2222222222333333321 111 123567799999999899999999
Q ss_pred HHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 332 AVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 332 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
.+|..+...-.-.. . ...+++..|.+++++ +....|.++|..+.
T Consensus 210 ~iL~~ll~~~d~~~-~-~~~dlispllrlL~t---~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 210 QILKVLLPHVDMRS-P-HGADLISPLLRLLQT---DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHhccccCCC-C-cchHHHHHHHHHhCC---ccHHHHHHHHHHHH
Confidence 99998877532111 1 445688888888876 45556777776654
No 330
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.35 E-value=2.6 Score=33.51 Aligned_cols=145 Identities=17% Similarity=0.100 Sum_probs=79.1
Q ss_pred CChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHH
Q 016465 187 GAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA 265 (389)
Q Consensus 187 g~l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 265 (389)
..++.|+++|+.+ +..+|.+++++|+.|..-++.+.+....+. +.-. -.+.+........ .+. .....-...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l---~~~-~~~~~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISL---PMM-GISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHH---hhc-cCCCchHHH
Confidence 4577888888765 689999999999999888877665332211 1000 0011111111111 111 111123344
Q ss_pred HhcCCcHHHHHHHhhcCc-ccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 266 VRAGIVPPLMRFLKDAGG-GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 266 ~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
.-.-++..|+..|.+++- .-...++.++.++......+..-.=..+++.++..+++.++..++.-..-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445567788888877432 2233455666665533222111111247888999998877777777666665554
No 331
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.25 E-value=1.7 Score=33.76 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=61.8
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh-CChHHHHHHHHHHHHHHhh
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 382 (389)
.++..|.+-|.+.++.++..|+.+|-.+..+. ......+.+.++++.|..++.. .++.|+.++..++..-...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999988874 6677888889999999998874 4789999999999887643
No 332
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.05 E-value=7.4 Score=39.03 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=116.9
Q ss_pred HHHHHHhhChhhhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhcccCChH--HHHHHHccCCH-H
Q 016465 127 ELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP--DIVDVLKNGSM-E 202 (389)
Q Consensus 127 ~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~--~L~~lL~~~~~-~ 202 (389)
.|.+...++++....+.+.|++..+.+.++. .+.+++..+++.+.+++...+.+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999986 467889999999999988766655544222222 34445554444 7
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc-cCCCchHHHHhcCCcHH-HHHHHhh
Q 016465 203 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS-IYQGNKARAVRAGIVPP-LMRFLKD 280 (389)
Q Consensus 203 ~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~-~~~~~~~~~~~~~~i~~-L~~ll~~ 280 (389)
..+.|+.+|..+..+.+. .. ....+..+...+.... ........+.....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~---------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TT---------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cc---------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 778888888877654322 01 1111222222222211 11111222222222222 4445544
Q ss_pred -cCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcC-ChHHHHHHHHHH
Q 016465 281 -AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVL 334 (389)
Q Consensus 281 -~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L 334 (389)
..+..+..|+.++.++.. .+++...+.+.+++..+.+.-... ...++..+...+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 567888999999999885 566666677778887776665332 344455555444
No 333
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.01 E-value=2.4 Score=40.32 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred hCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHh
Q 016465 227 AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAI 306 (389)
Q Consensus 227 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i 306 (389)
.|.+..++..+.+.+..++..++..|.-+...-......+-.|.+..|.+-+.+.++.++..|+.+|..+-....+-+.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 5667777888888899999999999999987766666677788899999999989999999999999877643322211
Q ss_pred hccCChHHHHHHHhcC-ChHHHHHHH
Q 016465 307 GQAEPIPVLMEVIRTG-SPRNRENAA 331 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~-~~~~~~~a~ 331 (389)
..+..|+.++++. +.++|..|+
T Consensus 169 ---~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 ---RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHH
Confidence 1234566666654 577777643
No 334
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.95 E-value=6.5 Score=36.01 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=62.1
Q ss_pred CHHHHHHHhcC-CChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccC-CHHHHHHHH-HHHHHhcCCchhhHH
Q 016465 147 AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAA-ATLFSLSVIDENKVA 223 (389)
Q Consensus 147 ~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~-~~~~~~~a~-~~L~~Ls~~~~~~~~ 223 (389)
-+..+++=|+. ....+|..++--|..-+.++..+..+...|..+.+++.+.+. +......++ .+++-++.+......
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 34566666653 356788888888888888899999999999999999999543 332444444 444444544444444
Q ss_pred HHhhCcHHHHHHHhc
Q 016465 224 IGAAGAIPALIRLLC 238 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~ 238 (389)
+...+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445566666677776
No 335
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.89 E-value=1.7 Score=33.33 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=60.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHHHHHHHh---CChHHHHHHHHHHHHHHhhH
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSES---GTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~ 383 (389)
++..|.+.|.++++.++..|+.+|-.+..+.. .....+.+..++..|+.++.. .++.++.++..++.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 67788888999999999999999999988764 466777777888889998875 37899999999998887543
No 336
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.65 E-value=2.5 Score=32.37 Aligned_cols=74 Identities=27% Similarity=0.298 Sum_probs=61.4
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hhHHHHhcCCHHHHHHHhcC---CChHHHHHHHHHHHhccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~lL~~---~~~~~~~~a~~~L~~l~~ 175 (389)
...++..|-+.|+++++.++..|+..|-.+...... ....+.....+..|++++.. .+..++..++..+.+.+.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999987655 56666666888889999975 378899999998877654
No 337
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.56 E-value=1.5 Score=31.04 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q 016465 272 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL 351 (389)
Q Consensus 272 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 351 (389)
...+..+.++...++..++..|..+..... ...+....++..++..+++.++-+--+|+..|..|+...++.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------- 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------- 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-------
Confidence 455666777888999999999999987665 122222457778888888899999999999999999876542
Q ss_pred CcHHHHHHHHHh
Q 016465 352 DAEEALKELSES 363 (389)
Q Consensus 352 ~~~~~L~~ll~~ 363 (389)
+++.|++...+
T Consensus 78 -vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 -VLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHhC
Confidence 45556554444
No 338
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.40 E-value=13 Score=33.53 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc-cc-cccchhcc--cCChHHHHHHHccC-----C--------HHHHHHHHHH
Q 016465 148 IPLLVELLSSTDPRTQEHAVTALLNLSI-ND-SNKGTIVN--AGAIPDIVDVLKNG-----S--------MEARENAAAT 210 (389)
Q Consensus 148 v~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~--~g~l~~L~~lL~~~-----~--------~~~~~~a~~~ 210 (389)
++.+.+.|......+...+++.|..++. +. .....+.. .--.+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888888988888888899999999887 44 33333332 22345566666321 1 2777777776
Q ss_pred HHHhcCC--chhhHHH-HhhCcHHHHHHHhccCChhhHHHHHHHHHH-hccCCC----chHHHHhcCCcHHHHHHHhhcC
Q 016465 211 LFSLSVI--DENKVAI-GAAGAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQG----NKARAVRAGIVPPLMRFLKDAG 282 (389)
Q Consensus 211 L~~Ls~~--~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~-L~~~~~----~~~~~~~~~~i~~L~~ll~~~~ 282 (389)
+..+... ...+..+ .+.+.+..+.+.+..++.++....+.+|.. +..++. .+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6666543 2344444 445789999999999889999999999885 444432 2344566778889999777766
Q ss_pred c----ccHHHHHHHHHHHhcChhh
Q 016465 283 G----GMVDEALAILAILASHQEG 302 (389)
Q Consensus 283 ~----~~~~~a~~~L~~l~~~~~~ 302 (389)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8899999999999975543
No 339
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.35 E-value=4.8 Score=42.75 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=76.4
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHh
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAI 306 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i 306 (389)
+.+..++..+.++...+|..|+++|.++...++.. +....+-..+..-+.+.+..|++.|+..++... .+++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 67788888888888999999999999998755422 112223334455566678889999999998654 44433222
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHH
Q 016465 307 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 344 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 344 (389)
....+..-+.+.+..+|..++.++..+|...|+.
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 2334444455566788999999999999876543
No 340
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.33 E-value=1 Score=37.83 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHhccCCCchHHHHhcCC-------cHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhH--HHhhccCC
Q 016465 242 PRGKKDAATAIFNLSIYQGNKARAVRAGI-------VPPLMRFLKD-AGGGMVDEALAILAILASHQEGK--TAIGQAEP 311 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-------i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~--~~i~~~~~ 311 (389)
-.-+..|+.+|..|+..+.|...+...+- +..|++++.. .++-.++.|+-+|.+|+..++.. ..-.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35688999999999999888877765443 3444445544 67778999999999999766653 43455789
Q ss_pred hHHHHHHHhcCC
Q 016465 312 IPVLMEVIRTGS 323 (389)
Q Consensus 312 v~~L~~ll~~~~ 323 (389)
+..|+.++....
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 341
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.31 E-value=2.4 Score=32.71 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=60.4
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHh------CChHHHHHHHHHHHHHHh
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 381 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 381 (389)
.++..|.+-|.+.++.++..|+.+|-.+..+. ......+.+.+++.-|+.++.. .+..|+.+...++..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999988864 5677888889999999999963 368999999998887764
No 342
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.22 E-value=12 Score=32.55 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=121.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhh----ChhhhHHHH------hc-CCHHHHHHHhcCC--ChHHHHHHHHHHHhccc
Q 016465 109 LLGKLANGNVEEQRAAAGELRLLAKR----NADNRVCIA------EA-GAIPLLVELLSST--DPRTQEHAVTALLNLSI 175 (389)
Q Consensus 109 l~~~l~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~------~~-g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~ 175 (389)
-+..|.+..+.....|+..|..+... ++..++.+. .. |..+.+..++-.+ +....+.++.+|..|+.
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~ 91 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTP 91 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhc
Confidence 35666777777777788877776432 222333222 12 5666666666554 44566777777777765
Q ss_pred cccc--------cchhcccCChHHHHHHHccCC----HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC--
Q 016465 176 NDSN--------KGTIVNAGAIPDIVDVLKNGS----MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-- 241 (389)
Q Consensus 176 ~~~~--------~~~i~~~g~l~~L~~lL~~~~----~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-- 241 (389)
.+.. +-.+.=-+.+|.++.-+.+++ ......++..|..++.... .+.+..+......+.
T Consensus 92 ~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr 164 (262)
T PF14225_consen 92 LPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFR 164 (262)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCC
Confidence 3222 111111234566666666666 1344567777777763211 223334444433222
Q ss_pred --hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHH
Q 016465 242 --PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 319 (389)
Q Consensus 242 --~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll 319 (389)
.+....++..|..-.. ++ .+...+..|+.+|.++.+.++...+.+|..+-...+.+.. ...+.+.++++++
T Consensus 165 ~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL 237 (262)
T PF14225_consen 165 DKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLL 237 (262)
T ss_pred CHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHh
Confidence 2222233333332110 00 1234566788899888899999999999999876665544 4455889999999
Q ss_pred hcCChHHHHHHHHHHHHHhh
Q 016465 320 RTGSPRNRENAAAVLWAICT 339 (389)
Q Consensus 320 ~~~~~~~~~~a~~~L~~l~~ 339 (389)
+++- ...|..+|-+...
T Consensus 238 ~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 238 QTDL---WMEALEVLDEIVT 254 (262)
T ss_pred CCcc---HHHHHHHHHHHHh
Confidence 7754 3456666665443
No 343
>PHA03096 p28-like protein; Provisional
Probab=90.15 E-value=0.18 Score=43.91 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=29.5
Q ss_pred CcCcCCcccCc-CCe------ec-CCccCccHHHHHHHHhcC--CCCCCCCCc
Q 016465 12 FRCPISLELMK-DPV------IV-STGQTYERSCIQKWLDAG--HKTCPKTQQ 54 (389)
Q Consensus 12 ~~Cpic~~~~~-~pv------~~-~c~h~~c~~ci~~~~~~~--~~~cp~c~~ 54 (389)
-.|.||++... .|. ++ .|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 46999997442 222 23 599999999999999742 235666654
No 344
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.00 E-value=2.9 Score=32.51 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=62.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hhHHHHhcCCHHHHHHHhcC-CChHHHHHHHHHHHhccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~lL~~-~~~~~~~~a~~~L~~l~~ 175 (389)
...++..+.+.|.+.++.++..|+..|-.+...... ....+....++..|.+++.. .+..++..++..+...+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999986654 56677777899999999988 688999999998887653
No 345
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.75 E-value=0.11 Score=43.10 Aligned_cols=49 Identities=14% Similarity=0.419 Sum_probs=33.1
Q ss_pred CcCcCCcccC-cCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016465 12 FRCPISLELM-KDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 12 ~~Cpic~~~~-~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
..|-.|..-- .+|-. +.|+|.||..|...-. ...||.|+.++....+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeeccc
Confidence 4577776543 45554 5799999999975432 237999999875544433
No 346
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.39 E-value=4.6 Score=28.95 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=55.2
Q ss_pred HHHH-hcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHH
Q 016465 263 ARAV-RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 334 (389)
Q Consensus 263 ~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L 334 (389)
..+. ....+..|++.+..+.....+.++..|..+..++.+...+.+-|++.-|-++-...++..+...-.++
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344 34667788888888888899999999999999999999999988888876666656666655544444
No 347
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.38 E-value=17 Score=35.04 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=70.4
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHH
Q 016465 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA 265 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 265 (389)
.|.+..+++.+.+.+..++..++.+|.-++..-.........|.+..|...+-+..+.++..|..+|+.+-....+-...
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 35777888888889999999999999888755433334445678888888888888999999999999876443333222
Q ss_pred HhcCCcHHHHHHHhh-cCcccHHHHH
Q 016465 266 VRAGIVPPLMRFLKD-AGGGMVDEAL 290 (389)
Q Consensus 266 ~~~~~i~~L~~ll~~-~~~~~~~~a~ 290 (389)
+ ...|+.+++. ++.+++..|+
T Consensus 170 ~----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 I----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred H----HHHHHHHHhcCcHHHHHHHHH
Confidence 2 2245555554 5566666553
No 348
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=2.7 Score=36.68 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=94.6
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccch
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 182 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 182 (389)
...+...+..|.+.|++....++..|..|+.-.++....+.. .++-.+++-+++....+-..|+.++..+...-...
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-- 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-- 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356788889999999999999999999998644433322222 35667777777878888889999988876532221
Q ss_pred hcccCChHHHHHHH-c---cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016465 183 IVNAGAIPDIVDVL-K---NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 183 i~~~g~l~~L~~lL-~---~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
+.+ -++.++..| . .++.-+++.|-.+|..+...-.. ..+++.|+..+.+.++.++..++....+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 111 234444433 2 23455788888888877543222 23557777788888888887777665554
No 349
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.25 E-value=3.8 Score=31.38 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhcc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~ 174 (389)
...++..+.+.|+++++.++..|+..|-.+.... ......+...+++..|..++... .+.++..++..+..-+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999874 45667777888999999999874 2348888888887654
No 350
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.19 E-value=6.1 Score=32.06 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhccccccccc------hhc------c-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHh--
Q 016465 162 TQEHAVTALLNLSINDSNKG------TIV------N-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-- 226 (389)
Q Consensus 162 ~~~~a~~~L~~l~~~~~~~~------~i~------~-~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~-- 226 (389)
+|..|+.+|..++..-+.|. .+. . ..-...+.-++.++++.+|..|+.++..|-......-...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56677777776665422221 122 1 12233445556788999999999999987544321111111
Q ss_pred ------------------hCcHHHHHHHhcc-CChhhHHHHHHHHHHhccCCC-chHH-HHhcCCcHHHHHHHhhcCccc
Q 016465 227 ------------------AGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQG-NKAR-AVRAGIVPPLMRFLKDAGGGM 285 (389)
Q Consensus 227 ------------------~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~~~-~~~~-~~~~~~i~~L~~ll~~~~~~~ 285 (389)
...-..|+..|.. .+..+....++++..|..... .+-. =.-..++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0233345555543 366777788889988887654 2211 111223455555667789999
Q ss_pred HHHHHHHHHHHhcCh
Q 016465 286 VDEALAILAILASHQ 300 (389)
Q Consensus 286 ~~~a~~~L~~l~~~~ 300 (389)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887644
No 351
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.18 E-value=0.52 Score=27.93 Aligned_cols=39 Identities=15% Similarity=0.436 Sum_probs=21.5
Q ss_pred CcCCcccCcCCeec---CCccCccHHHHHHHHhcCC-CCCCCC
Q 016465 14 CPISLELMKDPVIV---STGQTYERSCIQKWLDAGH-KTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~pv~~---~c~h~~c~~ci~~~~~~~~-~~cp~c 52 (389)
|-+|.++...=+.- .|+-.+-..|+..||.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777776655543 3887888999999998533 369987
No 352
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.11 E-value=5 Score=39.08 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred hcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHH
Q 016465 144 EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVA 223 (389)
Q Consensus 144 ~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 223 (389)
+.+++|.|+++++..+..+|-.-+.-+-+.. +.....+.+..++|.+..-+.+.++.+++..+..+..|+..=..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 4568999999999998888865555443332 223455667789999999999999999999998888775321111
Q ss_pred HHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCC-cHHHHHHHhhcCcccHHHHHHHHHHHhcChhh
Q 016465 224 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGI-VPPLMRFLKDAGGGMVDEALAILAILASHQEG 302 (389)
Q Consensus 224 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 302 (389)
..+...++.+..+-.+++..++.+..-+|+.+....... ++.++ +..+...+.++-..-+..++..++......+.
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 122234444444444556777877777777776543211 23333 33455556666666677777776655544332
Q ss_pred HHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 303 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 303 ~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
... ....++.+..+.-+.+..++..|..++...-
T Consensus 481 ~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 481 SEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhh--hhhccccccccccCcccchhhHHHHHHHHHH
Confidence 221 1235666666666666667766666665443
No 353
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.11 E-value=5.1 Score=28.70 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=55.6
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Q 016465 309 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILEL 378 (389)
Q Consensus 309 ~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~ 378 (389)
...+..|++.+...+...++.+...|..+...+ .....+.+.|+...|-++-..-++..+...-.++..
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 457788888888877778899999999988865 567788899999998888777788888877777654
No 354
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.02 E-value=2 Score=37.50 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=87.9
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhc
Q 016465 189 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRA 268 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 268 (389)
+...+..|.+.+.+....++..|..|+.....--.-.-...|-.+++-+++....+-..|+.++..+...-.+...-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45556677777777777888888877765431111011245666777777777788888888888876543322111
Q ss_pred CCcHHHHHHH-hh---cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 269 GIVPPLMRFL-KD---AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 269 ~~i~~L~~ll-~~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
-++.++..| .. .+.-+++.|-.+|..+..+.... .+++.|...+++.++.++..++....+..
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 233333333 33 33457888889998887654322 24667777888888888888776655543
No 355
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.93 E-value=18 Score=35.60 Aligned_cols=132 Identities=19% Similarity=0.099 Sum_probs=76.9
Q ss_pred CChHHHHHHHccC----CHHHHHHHHHHHHHhc----CCchhhHHHHhhCcHHHHHHHhc----cCChhhHHHHHHHHHH
Q 016465 187 GAIPDIVDVLKNG----SMEARENAAATLFSLS----VIDENKVAIGAAGAIPALIRLLC----DGTPRGKKDAATAIFN 254 (389)
Q Consensus 187 g~l~~L~~lL~~~----~~~~~~~a~~~L~~Ls----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~ 254 (389)
..+..+..++.++ .+.++..|.-+++.+. ...+..........++.+...|. ..+.+.+...+.+|+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3566777777653 4556666666666554 22222111122345566666554 2345556677888888
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHh-h--cCcccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcC--ChHHHH
Q 016465 255 LSIYQGNKARAVRAGIVPPLMRFLK-D--AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG--SPRNRE 328 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~--~~~~~~ 328 (389)
+-.. ..++.+..++. + .+..++..|+.+|..++. .+. .+-+.+++++.+. ++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHH
Confidence 7432 23344555554 2 345688899999998874 222 2445666777653 578888
Q ss_pred HHHHHHHH
Q 016465 329 NAAAVLWA 336 (389)
Q Consensus 329 ~a~~~L~~ 336 (389)
.|+.+|..
T Consensus 535 aA~~~lm~ 542 (574)
T smart00638 535 AAVLVLME 542 (574)
T ss_pred HHHHHHHh
Confidence 88777654
No 356
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=88.62 E-value=0.6 Score=31.12 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCcCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 11 DFRCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 11 ~~~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
.-.|-||++-.- +|.+ -.|+...||.|++--.+.++..||.|+.+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 357999997542 3333 258888999999877778889999998654
No 357
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.57 E-value=3.6 Score=31.50 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=59.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhC-C-hHHHHHHHHHHHHHHh
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-T-DRAKRKAGSILELLQR 381 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~-~-~~~~~~a~~~L~~l~~ 381 (389)
++..|.+-|.+.++.++..|+.+|-.+..+. ......+.+..++..|..++... + +.++.++..++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 6777888889999999999999999998874 56778888889999999988876 3 3489998888887655
No 358
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=88.56 E-value=0.35 Score=41.56 Aligned_cols=43 Identities=28% Similarity=0.661 Sum_probs=34.5
Q ss_pred CCcCcCCcccCc----CCeecCCccCccHHHHHHHHhcCCCCCCCCCc
Q 016465 11 DFRCPISLELMK----DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 54 (389)
Q Consensus 11 ~~~Cpic~~~~~----~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~ 54 (389)
.+.||+|.+.+. +|..++|||+.-..|++.....+ ..||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 355999998664 45568999999888888887766 88999976
No 359
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.52 E-value=4.4 Score=31.27 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcC------CChHHHHHHHHHHHhcc
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 174 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~------~~~~~~~~a~~~L~~l~ 174 (389)
..++..+.+.|++.++.++..|+..|-.+.... ......+...+++..|++++.. .+..++..++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998755 3456777778899999999963 46788988888887654
No 360
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.47 E-value=18 Score=33.27 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=82.7
Q ss_pred HhcCCchhhHHHHhhCcHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh----h--cCccc
Q 016465 213 SLSVIDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK----D--AGGGM 285 (389)
Q Consensus 213 ~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~----~--~~~~~ 285 (389)
+|+..++ ...+.+.+-.+.+-.-+...+ ...+..|+..|..|+...+.. +..-+...+..++. + .+..-
T Consensus 196 nl~~~e~-D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~---v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 196 NLCLREE-DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ---VTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHS--HH-HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred ccCCCHH-HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 4544433 334445555555555554333 455667778888887542221 11111122333333 2 33456
Q ss_pred HHHHHHHHHHHhcChhhH-------------HHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcC
Q 016465 286 VDEALAILAILASHQEGK-------------TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD 352 (389)
Q Consensus 286 ~~~a~~~L~~l~~~~~~~-------------~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 352 (389)
+..|+.++..|+...... ..+....+++.|. --.+..+-++..|++.+..+-..-+.. .+ .+
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~--~l--~~ 346 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE--QL--LQ 346 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH--HH--HH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH--HH--HH
Confidence 778999999998654321 1122222333332 001234677889999988876653321 11 24
Q ss_pred cHHHHHHHHHhCChHHHHHHHHHH
Q 016465 353 AEEALKELSESGTDRAKRKAGSIL 376 (389)
Q Consensus 353 ~~~~L~~ll~~~~~~~~~~a~~~L 376 (389)
+++.++..+.+++.-|+..|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 899999999999999999998764
No 361
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.42 E-value=6 Score=38.71 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=94.0
Q ss_pred HhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHH-ccCCHHHHHHHHHHHHHhcCCchhh
Q 016465 143 AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDENK 221 (389)
Q Consensus 143 ~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~ 221 (389)
+...++|.|...+++.+..+++.++..+...+..-+ ...+..-++|.|-.+- ...+..++..++.++..+. +..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHH
Confidence 345678888888888899999999999988765322 2233444566665553 3457788889999998887 222
Q ss_pred HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHH
Q 016465 222 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDE 288 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 288 (389)
+...-...+..+....+..++.+.....++..++.........+.-+.++|.++.+...+.-...++
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHH
Confidence 2222234445555556677888888888888877765544445555678888888776655444443
No 362
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=29 Score=34.53 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=84.4
Q ss_pred cCCHHHHHHHhcCC--------ChHHHHHHHHHHHhccc--c-ccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHH
Q 016465 145 AGAIPLLVELLSST--------DPRTQEHAVTALLNLSI--N-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS 213 (389)
Q Consensus 145 ~g~v~~L~~lL~~~--------~~~~~~~a~~~L~~l~~--~-~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~ 213 (389)
.|+++.+++.|... +..-.+.|++.+.++.. . ...-.-+.+.=+++.++..++++.--++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 38899999999431 23334667777776644 1 1222223334456677777788888889999999998
Q ss_pred hcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhc--CCcHHHHHHH
Q 016465 214 LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRA--GIVPPLMRFL 278 (389)
Q Consensus 214 Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~i~~L~~ll 278 (389)
++.+-.. .-.-..+.+...+.+++.+-.++..|+-||..+..+......+..+ +.++.|+.+-
T Consensus 487 ~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 487 IEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 8544222 2222456677777888888889999999999988877555444432 3344444433
No 363
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.28 E-value=6.4 Score=41.94 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=86.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhcc-ccccccch
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS-INDSNKGT 182 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~ 182 (389)
..+..++..|..+...+|..|+++|..+...++... ....+-..+..-+.+....+|+.|+..++... .+++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 466777778887888999999999999987665432 22223334444455567889999999998642 23222222
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
+-+.+.+-+.+....+|..++..+..++...+.-..+. .....++.-+.++...++..+..++.++-
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~--~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV--DMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH--HHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 23455555667778899999999998886644333221 11222223333333335555555555543
No 364
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.66 E-value=16 Score=35.53 Aligned_cols=166 Identities=11% Similarity=0.068 Sum_probs=95.9
Q ss_pred HHHhcCCChHHHHHHHHHHHhccccccccchhcc----cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh
Q 016465 152 VELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN----AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 227 (389)
Q Consensus 152 ~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~----~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~ 227 (389)
+.++.....+++--|+.+|.-+..+...-..+.. ...+..++..+. .++..+..++++|.|+-.++..+..+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3444445667777788888777665544444432 335566666665 56777788999999998886666655443
Q ss_pred --CcHHHHHHHhccCChhhHHHHHHHHHHhcc--CCCchHHHHhcCCcHHHHHHHhh---c--CcccHHHHHHHHHHHhc
Q 016465 228 --GAIPALIRLLCDGTPRGKKDAATAIFNLSI--YQGNKARAVRAGIVPPLMRFLKD---A--GGGMVDEALAILAILAS 298 (389)
Q Consensus 228 --~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~--~~~~~~~~~~~~~i~~L~~ll~~---~--~~~~~~~a~~~L~~l~~ 298 (389)
..+..+++.=..++..++...+....|++. ...+ .+.++.+.+...+.. + +.+.....+-+|++|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 222222222222334444444444444431 1111 114555555555544 1 22234456778888888
Q ss_pred ChhhHHHhhccCChHHHHHHHhcC
Q 016465 299 HQEGKTAIGQAEPIPVLMEVIRTG 322 (389)
Q Consensus 299 ~~~~~~~i~~~~~v~~L~~ll~~~ 322 (389)
.+....++...-.+..+...+++.
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHh
Confidence 888877777766788888887663
No 365
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.48 E-value=3.9 Score=31.61 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=59.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHHhC-ChH---HHHHHHHHHHHHHhh
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESG-TDR---AKRKAGSILELLQRI 382 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~-~~~---~~~~a~~~L~~l~~~ 382 (389)
++..|.+-|.+.++.++..|+.+|-.+..+. +.....+.+..++..|..++.+. ... |++++..+|......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999886 56667777888999999988875 333 899998888877544
No 366
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=87.22 E-value=0.33 Score=30.47 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc-CCCCCCCCCc
Q 016465 10 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQ 54 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~-~~~~cp~c~~ 54 (389)
+.|.||.|++.+... .+..-+.+..... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999999954432 2445555555443 3467999975
No 367
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.00 E-value=4.2 Score=39.71 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=88.5
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHH-hccCChhhHHHHHHHHHHhccCCCchHH
Q 016465 186 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSIYQGNKAR 264 (389)
Q Consensus 186 ~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~L~~~~~~~~~ 264 (389)
..+++.|..-+++.+..++..++..+..++..-+ ...+..-+++.+-.+ +++.+..++.+++.++..+. +.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QR 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HH
Confidence 3467777777778888889999988888775544 333445566777666 34567888889999988886 22
Q ss_pred HHhcCCcHHHHHH---HhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC
Q 016465 265 AVRAGIVPPLMRF---LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 323 (389)
Q Consensus 265 ~~~~~~i~~L~~l---l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~ 323 (389)
+-...+++.+..+ ....++.+....+.+..++.....+...+..+.+++.+..+.....
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3333444444444 4457888888888888887755444455556678888888876654
No 368
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=22 Score=35.06 Aligned_cols=144 Identities=18% Similarity=0.170 Sum_probs=94.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCC--chh----hHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchH
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSVI--DEN----KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 263 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~--~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~ 263 (389)
|.|.+-|+-.+.+++..|+.++.++--- ++. ...+. ..-...+.++|.++-+.+|..|..-+..+.+ ...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 4455666778899999999999998532 221 12222 2456788899999989999888776665432 112
Q ss_pred HHHhcCCcHHHHHHHhh-----cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 264 RAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 264 ~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
.++-..++..|+..+.+ ...+++-.....|..+..++.....+- -+++.|-..|++.++.+|.+++.+|..+-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 23333333334333322 455788888888888887775543332 24566667778888999999999887764
Q ss_pred h
Q 016465 339 T 339 (389)
Q Consensus 339 ~ 339 (389)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 4
No 369
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.32 E-value=0.19 Score=51.59 Aligned_cols=45 Identities=27% Similarity=0.619 Sum_probs=37.5
Q ss_pred CCCCCcCcCCcccCcCC-eecCCccCccHHHHHHHHhcCCCCCCCCC
Q 016465 8 IPDDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQ 53 (389)
Q Consensus 8 ~~~~~~Cpic~~~~~~p-v~~~c~h~~c~~ci~~~~~~~~~~cp~c~ 53 (389)
+...+.|++|++.++.- -+..|||.+|..|+..|+.. ...||.|.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 44567999999999954 45789999999999999986 45699997
No 370
>PHA02862 5L protein; Provisional
Probab=85.54 E-value=0.84 Score=34.60 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=33.1
Q ss_pred CcCcCCcccCcCCeecCCcc-----CccHHHHHHHHhc-CCCCCCCCCccCcC
Q 016465 12 FRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLLH 58 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c~h-----~~c~~ci~~~~~~-~~~~cp~c~~~~~~ 58 (389)
-.|-||++.-.+. .-||.. -..+.|+++|+.. +...||.|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3688999876554 355543 3579999999974 45689999988653
No 371
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=85.34 E-value=0.59 Score=28.33 Aligned_cols=39 Identities=31% Similarity=0.747 Sum_probs=22.6
Q ss_pred CcCCcccCcC--CeecCCcc-----CccHHHHHHHHhc-CCCCCCCC
Q 016465 14 CPISLELMKD--PVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKT 52 (389)
Q Consensus 14 Cpic~~~~~~--pv~~~c~h-----~~c~~ci~~~~~~-~~~~cp~c 52 (389)
|-||++.-.+ |.+.||+- -..+.|+.+|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677765432 56667643 3468899999984 55678876
No 372
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=84.74 E-value=0.05 Score=35.65 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
+..||.|++.|..- -|+.+|..|-..+... ..||.|++++.
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~~--a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKKE--AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEEE--EE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----CCEEECccccccceec--ccCCCcccHHH
Confidence 46899999986531 2778888887654432 46999998875
No 373
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.48 E-value=5.1 Score=30.96 Aligned_cols=73 Identities=25% Similarity=0.212 Sum_probs=59.2
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhhHHHHhcCCHHHHHHHhcCC-ChH---HHHHHHHHHHhcc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST-DPR---TQEHAVTALLNLS 174 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~lL~~~-~~~---~~~~a~~~L~~l~ 174 (389)
...++..+.+.|+++++.++..|+..|-.+.... +.....+....++..|.+++... ... +++.++..|...+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999876 45667777778899999988764 333 7888888876654
No 374
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=84.39 E-value=51 Score=37.01 Aligned_cols=232 Identities=11% Similarity=0.090 Sum_probs=121.4
Q ss_pred hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc----CCChHHHHHHHHHHHhccccc
Q 016465 103 RAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS----STDPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 103 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~ 177 (389)
..++..+...+. +.+.++++..+.++.++...... . ++. +.+.+..++. ..++.+.+.|...+..+..+-
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---n-IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---N-VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---h-hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 456666666555 44678888888888887753322 1 223 4555555554 456788888888887665321
Q ss_pred cccchhc--ccCC----hHHHHHHHccC-CHHHHHHHHHHHHHhcCC----c---------------------h---hhH
Q 016465 178 SNKGTIV--NAGA----IPDIVDVLKNG-SMEARENAAATLFSLSVI----D---------------------E---NKV 222 (389)
Q Consensus 178 ~~~~~i~--~~g~----l~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~----~---------------------~---~~~ 222 (389)
- ..+. ..+. |..|.++.+.. +.++...|+..|++++.. . . ...
T Consensus 1256 f--~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 1333 (1780)
T PLN03076 1256 F--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESG 1333 (1780)
T ss_pred h--hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 1 1111 1233 33444444333 355556677777754100 0 0 000
Q ss_pred HH-----HhhCcHH---HHHHHhccCChhhHHHHHHHHHHhccCCC-----chHHHHhcCCcHHHHHHHhhc--------
Q 016465 223 AI-----GAAGAIP---ALIRLLCDGTPRGKKDAATAIFNLSIYQG-----NKARAVRAGIVPPLMRFLKDA-------- 281 (389)
Q Consensus 223 ~~-----~~~~~i~---~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~i~~L~~ll~~~-------- 281 (389)
.+ .....++ .|..+..+...++|..|+..|..+....+ .....+-.+++-++++.+...
T Consensus 1334 ~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~ 1413 (1780)
T PLN03076 1334 EFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDE 1413 (1780)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 00 0012333 33333456788999999999987654322 123334456667776666431
Q ss_pred --------Cc-------ccHHHHHHHHHHHhcChhh-HHHhh--ccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC
Q 016465 282 --------GG-------GMVDEALAILAILASHQEG-KTAIG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 341 (389)
Q Consensus 282 --------~~-------~~~~~a~~~L~~l~~~~~~-~~~i~--~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 341 (389)
+. .+.+.+..+|.++...-.. -..+- =.+.+..|...+...++.+-..+..+|.+|...+
T Consensus 1414 ~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1414 PEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 00 1234444455555432111 11110 0234555555556677777788888888877654
No 375
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.11 E-value=12 Score=28.11 Aligned_cols=72 Identities=8% Similarity=0.227 Sum_probs=52.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhc-CcHHHHHHHHH-----hC---ChHHHHHHHHHHHHHH
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIAREL-DAEEALKELSE-----SG---TDRAKRKAGSILELLQ 380 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~-~~~~~L~~ll~-----~~---~~~~~~~a~~~L~~l~ 380 (389)
++..|.+-|++.++.++..++.+|.+++... +..+..+.+. ..|..+.++-. .+ ...||..|.+++..|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999998865 4555555544 34445444443 22 3579999999999886
Q ss_pred hh
Q 016465 381 RI 382 (389)
Q Consensus 381 ~~ 382 (389)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 376
>PF14353 CpXC: CpXC protein
Probab=83.87 E-value=0.72 Score=35.10 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhc--CCCCCCCCCccCc
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~--~~~~cp~c~~~~~ 57 (389)
..+||-|+..+.-.+-..-+-..-..-.++-+.. ..++||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3689999998876654333333444445555542 2347999998764
No 377
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.80 E-value=5.7 Score=38.78 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=75.8
Q ss_pred cHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc------cCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHH
Q 016465 271 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ------AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 344 (389)
Q Consensus 271 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~------~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 344 (389)
...+..+|.+++-.++-..+.+.+|+..+-....++.+ ...+..|.+-+.+.++.+|..|+.++..++..+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 35677888888888888888999998854333333332 134556666667778999999999999988765321
Q ss_pred HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 345 LKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 345 ~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
.. .+..++....+-+++.+.-||++|.++...|-
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 11 11235666777888889999999998887763
No 378
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.70 E-value=9.7 Score=30.40 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=66.6
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh--CcHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCchHH
Q 016465 188 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKAR 264 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~--~~i~~L~~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~ 264 (389)
.+..+..+|++++++.+-.++..+.-.+...+. +.+.+. ..+..++..|+..+ ..+.+.++.+|..|...-.....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 466788888898888888888888777654322 233232 56788888887654 56677788888777654333333
Q ss_pred HHhc-------CCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 265 AVRA-------GIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 265 ~~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
+.++ +++..+++++.+ ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3322 233344444432 4666777777776653
No 379
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=83.27 E-value=27 Score=29.55 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCc------------------ccHHHHHHHHHHHhcChhhH
Q 016465 242 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG------------------GMVDEALAILAILASHQEGK 303 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------------~~~~~a~~~L~~l~~~~~~~ 303 (389)
......++..+..|...+++...+.+.+.++.+.+.|...++ .+...=...|+.++.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 445566778888888888888888888999988888866311 11122357788899999999
Q ss_pred HHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHH-HHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 304 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEE-ALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 304 ~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
..+-+.+.+..+..+....+. ......+|.+|=...+ |-.. .|-..+.+++..+|..|.+.|+.+-+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987543 2222224444422211 2222 34457788899999999999987753
No 380
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.96 E-value=0.89 Score=40.89 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=20.3
Q ss_pred CccHHHHHHHHhc------------CCCCCCCCCccCcCC
Q 016465 32 TYERSCIQKWLDA------------GHKTCPKTQQTLLHT 59 (389)
Q Consensus 32 ~~c~~ci~~~~~~------------~~~~cp~c~~~~~~~ 59 (389)
.+|..|+.+||.. +...||.||..+-..
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 3467899999974 234699999886533
No 381
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.62 E-value=0.77 Score=39.09 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=21.7
Q ss_pred CccCccHHHHHHHHhc------------CCCCCCCCCccCc
Q 016465 29 TGQTYERSCIQKWLDA------------GHKTCPKTQQTLL 57 (389)
Q Consensus 29 c~h~~c~~ci~~~~~~------------~~~~cp~c~~~~~ 57 (389)
|-..+|++|+-+|+.. +..+||.||..+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 3345688999999963 3457999998765
No 382
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.57 E-value=35 Score=29.66 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=117.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHHHhh
Q 016465 150 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAA 227 (389)
Q Consensus 150 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~ 227 (389)
.|=..|.++++.+|..|+..|..+...-+.. . ....-+..|+.+..+ .+......++..+..|.......... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 3446677889999999999988764422111 1 122224555555533 24444444455555554322211111 11
Q ss_pred CcHHHHHHHhc--cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHH
Q 016465 228 GAIPALIRLLC--DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKT 304 (389)
Q Consensus 228 ~~i~~L~~ll~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 304 (389)
..+..+.+-.. ......|..+...|..+..+......-...+.+..+++.+.. .+|+-...+..++..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 23333333222 224566777888888876543211111223467777777765 5677777777777766543221
Q ss_pred HhhccCChHHHHHHHhc----------CCh--HHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Q 016465 305 AIGQAEPIPVLMEVIRT----------GSP--RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 372 (389)
Q Consensus 305 ~i~~~~~v~~L~~ll~~----------~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a 372 (389)
......+.+.+.. +++ -.++.-...|.+.-..++... .-.++.|++=+.++.+.+|.-+
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHH
Confidence 2344444444432 121 123444444444333333332 2478888888888888899888
Q ss_pred HHHHHHHHhh
Q 016465 373 GSILELLQRI 382 (389)
Q Consensus 373 ~~~L~~l~~~ 382 (389)
...|......
T Consensus 229 L~tL~~c~~~ 238 (262)
T PF14500_consen 229 LQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHH
Confidence 8888776543
No 383
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.50 E-value=1.5 Score=27.30 Aligned_cols=30 Identities=30% Similarity=0.748 Sum_probs=23.8
Q ss_pred CCcCcCCcccC--cCCeec--CCccCccHHHHHH
Q 016465 11 DFRCPISLELM--KDPVIV--STGQTYERSCIQK 40 (389)
Q Consensus 11 ~~~Cpic~~~~--~~pv~~--~c~h~~c~~ci~~ 40 (389)
.-.|++|++.+ .|.++. .||-.|-|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35799999999 667653 4999999999754
No 384
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.40 E-value=11 Score=33.19 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=46.8
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccccccc--hhcccCChHHHH----HHHc--------cCCHHHHHHHHHHHH
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG--TIVNAGAIPDIV----DVLK--------NGSMEARENAAATLF 212 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~i~~~g~l~~L~----~lL~--------~~~~~~~~~a~~~L~ 212 (389)
++|.++.++.+.+++++..++.+|..+....+... .+...|..+.+- ..|. +.+..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999876443322 244555444433 3333 334556666777777
Q ss_pred Hhc
Q 016465 213 SLS 215 (389)
Q Consensus 213 ~Ls 215 (389)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 763
No 385
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.18 E-value=1.1 Score=41.10 Aligned_cols=47 Identities=15% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCcCcCCcccCcCC-e---ecCCccCccHHHHHHHHhc-----CCCCCCC--CCccCc
Q 016465 11 DFRCPISLELMKDP-V---IVSTGQTYERSCIQKWLDA-----GHKTCPK--TQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~~p-v---~~~c~h~~c~~ci~~~~~~-----~~~~cp~--c~~~~~ 57 (389)
..+|.+|..-..++ . +..|+|-||..|..+++.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 46899999433222 2 3569999999999999972 2346776 444444
No 386
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.08 E-value=26 Score=28.45 Aligned_cols=138 Identities=15% Similarity=0.084 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhccCCCchHH------HH------hcCCcHH-HHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc--
Q 016465 244 GKKDAATAIFNLSIYQGNKAR------AV------RAGIVPP-LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-- 308 (389)
Q Consensus 244 ~~~~a~~~L~~L~~~~~~~~~------~~------~~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-- 308 (389)
+|..|+.+|..++...+.+.. +. ..+.-+. +.-++.|+++.++..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 567777777777766332211 11 1123334 44456779999999999999998765432111111
Q ss_pred ---cC---------------ChHHHHHHHhcC-ChHHHHHHHHHHHHHhhcCHHHHHHHHhcC----cHHHHHHHHHhCC
Q 016465 309 ---AE---------------PIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAEQLKIARELD----AEEALKELSESGT 365 (389)
Q Consensus 309 ---~~---------------~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~ll~~~~ 365 (389)
.+ .-..|+..|+.+ +..+....+.+|..|....|-.+- +.| ++..+..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 00 113344455544 566677888888888887653321 123 4455556778899
Q ss_pred hHHHHHHHHHHHHHHhhHh
Q 016465 366 DRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 366 ~~~~~~a~~~L~~l~~~~~ 384 (389)
+.++..+..++..+.....
T Consensus 159 ~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 9999999999988865543
No 387
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.00 E-value=1.8 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.8
Q ss_pred CccCccHHHHHHHHhcCCCCCCCCCccCcCCCCCc
Q 016465 29 TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 63 (389)
Q Consensus 29 c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~~~ 63 (389)
-.+|||..|.+..+. ..||.|+..+......|
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 357999999997764 46999998876666555
No 388
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=80.56 E-value=1.1 Score=28.87 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=9.5
Q ss_pred CccHHHHHHHHhc
Q 016465 32 TYERSCIQKWLDA 44 (389)
Q Consensus 32 ~~c~~ci~~~~~~ 44 (389)
.|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 389
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.66 E-value=22 Score=32.33 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=78.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHccC-------CHHHHHHHHHHHHHhcCCchhhH
Q 016465 150 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-------SMEARENAAATLFSLSVIDENKV 222 (389)
Q Consensus 150 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~ 222 (389)
.+.+.+.+++...+..|+..|.. ++.. ...+|-++.++.++ +.......+..+..|..++...-
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t---D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT---DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc---CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 33444444556666666555432 2211 12456666666542 45566677788888877766544
Q ss_pred HHHhhCcHHHHHHHhcc----------CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCccc--HHHHH
Q 016465 223 AIGAAGAIPALIRLLCD----------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGM--VDEAL 290 (389)
Q Consensus 223 ~~~~~~~i~~L~~ll~~----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~--~~~a~ 290 (389)
...-+..++.++.++-. +...+|..|+..|..++..-...-.-+...++..+.+.+.++.... ..-|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 44444577888877632 2347888999999998864433333344555566776666543322 34455
Q ss_pred HHHHHH
Q 016465 291 AILAIL 296 (389)
Q Consensus 291 ~~L~~l 296 (389)
..|..+
T Consensus 333 ~GL~~l 338 (343)
T cd08050 333 VGLSAL 338 (343)
T ss_pred HHHHHh
Confidence 555444
No 390
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.65 E-value=0.71 Score=35.71 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.8
Q ss_pred CCCcCcCCcccCcCCeecCCc
Q 016465 10 DDFRCPISLELMKDPVIVSTG 30 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c~ 30 (389)
++.+||||++...+.|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999987553
No 391
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=78.18 E-value=17 Score=26.84 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=52.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHH------hCChHHHHHHHHHHHHHH
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSE------SGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~------~~~~~~~~~a~~~L~~l~ 380 (389)
++..|.+-|.+.++.++..|+.+|-.+..+. +.....+.+..++..++.+.. ..+..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5677777888889999999999999998875 566667777766666654311 226789999999887654
No 392
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=78.11 E-value=2.4 Score=32.75 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHH
Q 016465 312 IPVLMEVIRTGSPRNRENAAAVLWAI 337 (389)
Q Consensus 312 v~~L~~ll~~~~~~~~~~a~~~L~~l 337 (389)
|..|+.+|.+.++.+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 77788888777777777777777663
No 393
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=78.02 E-value=3.5 Score=33.36 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=31.3
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcCCCC-CccHHHHHHHHHHHHhcC
Q 016465 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL-TPNYVLKSLIALWCENNG 79 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~~~~-~~n~~~~~~i~~~~~~~~ 79 (389)
+..|.||-|+.-+. | ..... .+|.||.|+.++...+- ..-..++..|..+...-+
T Consensus 115 ~~~Y~Cp~C~~ryt----------f-----~eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------F-----DEAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcEEe----------H-----HHHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 45677887763322 2 23333 47999999998864322 112355666666654433
No 394
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=77.55 E-value=63 Score=34.41 Aligned_cols=234 Identities=18% Similarity=0.103 Sum_probs=119.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhH-HHHhcCCHHHHH--------HHhcC-CChHHHHHHHHHHHh
Q 016465 103 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLV--------ELLSS-TDPRTQEHAVTALLN 172 (389)
Q Consensus 103 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~--------~lL~~-~~~~~~~~a~~~L~~ 172 (389)
.+.++.|+..+.++.+++|.-+...+..+......... ...+.-.+..+. +.... --..+|+..+++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 57889999999999999999888888887653322111 111111111111 11110 013567777777777
Q ss_pred ccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHHHhhCcHHHHHHHhccCChhhHHHHHHH
Q 016465 173 LSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 251 (389)
Q Consensus 173 l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 251 (389)
+..+...... ...+..+..++..++.+++.-.+..+...... .+.-. ..-..+++..++.|.+.+..++..|+..
T Consensus 156 ~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 156 YLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 6543221111 12345566666555443332222222211100 00000 1112456777788888888999988888
Q ss_pred HHHhccCCCchHHHHhcCCcHHHHHHHhhcCc--ccHHHHHHHHHHHhcChhhHHH---h-hccCChHHHHHHHhcCChH
Q 016465 252 IFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASHQEGKTA---I-GQAEPIPVLMEVIRTGSPR 325 (389)
Q Consensus 252 L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~---i-~~~~~v~~L~~ll~~~~~~ 325 (389)
+.............--..++..+...+..-+. .-.......+..++...+.... . .+.|.++.+..++.+.-..
T Consensus 232 l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~s 311 (1549)
T KOG0392|consen 232 LVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISS 311 (1549)
T ss_pred hhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHH
Confidence 87765433111110011223333333322221 1122223334444444422111 1 2247889999999887778
Q ss_pred HHHHHHHHHHHHhhc
Q 016465 326 NRENAAAVLWAICTG 340 (389)
Q Consensus 326 ~~~~a~~~L~~l~~~ 340 (389)
++..++..+..|...
T Consensus 312 v~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 312 VRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888887764
No 395
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=77.38 E-value=19 Score=31.73 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=50.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhh-HHHHhcCCHHHHHHHhc------------CCChHHHHHHHHHH
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLS------------STDPRTQEHAVTAL 170 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~lL~------------~~~~~~~~~a~~~L 170 (389)
-.+|.++.++.+.+++.+..++.+|..+....+... ..+.+.|..+.+-+.+. .+...+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368889999998899999999999999987544333 34666676666555553 22445667777777
Q ss_pred Hhccc
Q 016465 171 LNLSI 175 (389)
Q Consensus 171 ~~l~~ 175 (389)
..|..
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77643
No 396
>PLN02189 cellulose synthase
Probab=77.23 E-value=1.7 Score=44.53 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=33.9
Q ss_pred cCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 13 RCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.|.||++-.. +|-+ -.|+-..||.|++-=.++++..||.|+....
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 8999998753 3433 2477789999997666678889999986643
No 397
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=77.03 E-value=34 Score=27.75 Aligned_cols=73 Identities=21% Similarity=0.159 Sum_probs=56.5
Q ss_pred CcHHHHHHHhccCChhhHHHHHHHHHHhccC-CCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcCh
Q 016465 228 GAIPALIRLLCDGTPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 300 (389)
Q Consensus 228 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 300 (389)
-.++.+++-|.+.+...+.-|...+..|... ...+..-+-...+.++-..|.+.++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 5677888888887777778888888877766 333333344678889999999999999999999999996543
No 398
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.74 E-value=1.7 Score=42.33 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=32.6
Q ss_pred CCCcCcCCcccCcCCee--cCCccCccHHHHHHHHhcCCCCCCC-CCcc
Q 016465 10 DDFRCPISLELMKDPVI--VSTGQTYERSCIQKWLDAGHKTCPK-TQQT 55 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~-c~~~ 55 (389)
..|.|.+|.--.+---. ..|||....+|..+||..|. .||. |+..
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 34678887765543322 46999999999999999755 6998 6543
No 399
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.09 E-value=16 Score=33.11 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=61.5
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHh
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 381 (389)
++++.|.+-|...++.+...|+.+|..+..+. ...+.++....+...|..++. ...+.|+++...++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999988764 466778888899999999999 5588999999988888776
No 400
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.90 E-value=21 Score=29.23 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=52.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHHhhcC---HHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 311 PIPVLMEVIRTGSPRNRENAAAVLWAICTGD---AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 311 ~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
.++.++++..+.+..++..|+.++.-+...+ |.. .++.|+.+..++++.++..|..+++.+.+-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 4677788888889999999999998877643 322 588999999999999999999999999543
No 401
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=75.88 E-value=1.1 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=22.8
Q ss_pred CcCcCCcccCcCCeecCC-ccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016465 12 FRCPISLELMKDPVIVST-GQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~~~c-~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
+.|.-|.-.-+. .+.| .|-.|..|+...+..+ ..||.|+.++..
T Consensus 3 ~nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFANKG--LIKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S--SS--EEE-SS-EEEHHHHHHT-SSS-SEETTTTEE---
T ss_pred ccChhhhhcCCC--eeeecchhHHHHHHHHHhccc-cCCCcccCcCcc
Confidence 345555444333 3445 5888999999888764 459999988753
No 402
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=75.86 E-value=1.3e+02 Score=34.14 Aligned_cols=135 Identities=14% Similarity=0.082 Sum_probs=79.3
Q ss_pred CCChHHHHHHHHHHHhccccccccchh----cccCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHH
Q 016465 157 STDPRTQEHAVTALLNLSINDSNKGTI----VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIP 231 (389)
Q Consensus 157 ~~~~~~~~~a~~~L~~l~~~~~~~~~i----~~~g~l~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~ 231 (389)
+.+..++..|+..|..++..--.+..+ ....++.++..++. +.+.++++..+.++.++...... .+ . .+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-k-SGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-K-SGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-h-cCcH
Confidence 346677788888887776522122221 12457788888776 45679999999999988643221 11 1 2556
Q ss_pred HHHHHhc----cCChhhHHHHHHHHHHhccCCCchHHHHh--cCCcHHHHHHHh----h-cCcccHHHHHHHHHHHh
Q 016465 232 ALIRLLC----DGTPRGKKDAATAIFNLSIYQGNKARAVR--AGIVPPLMRFLK----D-AGGGMVDEALAILAILA 297 (389)
Q Consensus 232 ~L~~ll~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~i~~L~~ll~----~-~~~~~~~~a~~~L~~l~ 297 (389)
.++.++. +.++.+...|...+..+..+. ...+.. .+.+..++..|. . .+.++...|+..|++++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 6666654 446677777877777665321 111111 233334444443 2 34677888888888773
No 403
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=75.61 E-value=27 Score=26.99 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=56.3
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHHhhcC-HHHHHHHHhcCcHHH-HHHHHHhC---ChHHHHHHHHHHHHHHhh
Q 016465 311 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEA-LKELSESG---TDRAKRKAGSILELLQRI 382 (389)
Q Consensus 311 ~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~-L~~ll~~~---~~~~~~~a~~~L~~l~~~ 382 (389)
++..|.+-|.+ .++.+...|+.+|-.+..+. .....++.+.+++.- |+.++... +..|+.++..+++..+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 56777777764 57888889999998888875 567778888899997 89988642 458999999888887643
No 404
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=2.9 Score=39.52 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCCCcCcCCcccCcC-CeecCCccCccHHHHHHHHhc
Q 016465 9 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDA 44 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~~~~ 44 (389)
.....|.+|...... .+.+.|||.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 455899999998875 556789999999999999974
No 405
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=75.50 E-value=3.5 Score=25.64 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=27.3
Q ss_pred cCcCCcccC-cCC-eecCC--ccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016465 13 RCPISLELM-KDP-VIVST--GQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 13 ~Cpic~~~~-~~p-v~~~c--~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
.|--|..-+ .+. -..-| ..|||..|.+..+. ..||.|+..+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 455666533 221 22223 35899999998874 469999877654
No 406
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=74.78 E-value=1.6 Score=35.48 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=33.6
Q ss_pred CcCcCCcccCcCCee-cCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 12 FRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 12 ~~Cpic~~~~~~pv~-~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
..|.+|+.+...-+. =.||-.|.++|++.++.+ ...||.|+.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 479999998765443 357777889999999987 56799996543
No 407
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.66 E-value=2.7 Score=41.27 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.1
Q ss_pred CCCCCCCcCcCCcccCcCCee----cC---CccCccHHHHHHHHhc
Q 016465 6 PVIPDDFRCPISLELMKDPVI----VS---TGQTYERSCIQKWLDA 44 (389)
Q Consensus 6 ~~~~~~~~Cpic~~~~~~pv~----~~---c~h~~c~~ci~~~~~~ 44 (389)
.+.++.-+|++|..-+.+|+- .+ |+|.+|..||..|..+
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 345667899999999998762 44 8999999999999974
No 408
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.61 E-value=1.4e+02 Score=32.81 Aligned_cols=202 Identities=14% Similarity=0.017 Sum_probs=127.2
Q ss_pred cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccC----ChhhHHHHHH--
Q 016465 178 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDG----TPRGKKDAAT-- 250 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~-- 250 (389)
+.+..+++.|.+..+..-+++.++.++..|.+++...-...++. ....+.-.+..++.+.+++ ++++.....-
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 33446678899999999999999999999988887665444442 3333333445555555433 3333322221
Q ss_pred -HHHHhccCCCc--h---------HHHHhcCCcHHHHHHHhhc---CcccHHHHHHHHHHHhcChhhHHHhhccCChHHH
Q 016465 251 -AIFNLSIYQGN--K---------ARAVRAGIVPPLMRFLKDA---GGGMVDEALAILAILASHQEGKTAIGQAEPIPVL 315 (389)
Q Consensus 251 -~L~~L~~~~~~--~---------~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L 315 (389)
-..+++..+.. . ...++-.++|.+-+.+.+. ....++..+..+...-......+.....+....+
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ 1589 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETL 1589 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEe
Confidence 12334444421 1 2345667888888888773 3346777777777777777777777777888888
Q ss_pred HHHHhcC--ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHH-HHHHHHHH
Q 016465 316 MEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRK-AGSILELL 379 (389)
Q Consensus 316 ~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~-a~~~L~~l 379 (389)
+.+..+. +...+.....+|.+=..-.......+...|+...+..++.++ .+..+.. -..++..+
T Consensus 1590 lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1590 LSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred ehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 8888774 455566666666665544445555566679999999999887 3444443 34444444
No 409
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=74.40 E-value=5.1 Score=29.14 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHH
Q 016465 121 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 164 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~ 164 (389)
....++.+..++. .|+....+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567777888886 667888899999999999999999877654
No 410
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=74.17 E-value=93 Score=36.05 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=104.1
Q ss_pred hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 016465 183 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 261 (389)
Q Consensus 183 i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~ 261 (389)
....+.+..+...+.++.-..+..+...+++++..++.. ..-...-.+..+-++..+.-..+....+.-+..+......
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 445566677777777888888888899999888755411 1111112222222222222222333333322222221111
Q ss_pred hHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHH-HhhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhh
Q 016465 262 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT-AIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICT 339 (389)
Q Consensus 262 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~~~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 339 (389)
.....-...+..++..+.+.+..+...++.++..||....... ..++ ..++.+.+.+.. ++..-+..+.+++.++..
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 1122223445677777777888888888999999986443211 1122 345555555554 345567888999999887
Q ss_pred cCHHHHH-HHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHH
Q 016465 340 GDAEQLK-IARELDAEEALKELSESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 340 ~~~~~~~-~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l 379 (389)
...-... .....-++..|...+..+ ...++..+...+.++
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 4321111 111123455555555554 344566666665544
No 411
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.12 E-value=47 Score=32.93 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=90.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhccc--ccc----ccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhc-CCchhh
Q 016465 149 PLLVELLSSTDPRTQEHAVTALLNLSI--NDS----NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS-VIDENK 221 (389)
Q Consensus 149 ~~L~~lL~~~~~~~~~~a~~~L~~l~~--~~~----~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls-~~~~~~ 221 (389)
|.|-+-|+-.+..+|.+|+..+.++-- +++ ..+.+.+. -...+.++|+++.+.++..|..-+.... ......
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 455566667799999999999998643 222 23444443 3678899999999999988776554432 111111
Q ss_pred HHHHhhCcHHHHHHHhc-cCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhc
Q 016465 222 VAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 298 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 298 (389)
..-.-...+..+++-+. +...++|......|..+..++.....+ ..++|.|-..|.+.+..++..++.+|..+-.
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11111122333333332 334577777777777777665433221 2345666677778888899998888877753
No 412
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=73.90 E-value=9.4 Score=29.60 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHhccCC-hhh---HHHHHHHHHHhccCCCc-----hHH---HHh--cCC--cHHHHHHHhhcCcccHHHHHHHHHH
Q 016465 232 ALIRLLCDGT-PRG---KKDAATAIFNLSIYQGN-----KAR---AVR--AGI--VPPLMRFLKDAGGGMVDEALAILAI 295 (389)
Q Consensus 232 ~L~~ll~~~~-~~~---~~~a~~~L~~L~~~~~~-----~~~---~~~--~~~--i~~L~~ll~~~~~~~~~~a~~~L~~ 295 (389)
.++++|.+.- +.+ ..-=+..|..++..... ... +.. .|+ +.+|+++|.+.+.++...|...|.+
T Consensus 41 ~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 41 FLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5666666542 222 11123456666654331 222 222 244 8999999999999999999999986
Q ss_pred HhcChhhHHHhhccCChHHHHHHHhc
Q 016465 296 LASHQEGKTAIGQAEPIPVLMEVIRT 321 (389)
Q Consensus 296 l~~~~~~~~~i~~~~~v~~L~~ll~~ 321 (389)
..-- .+.+..+..+.+.
T Consensus 121 TlLv---------yDaf~dv~~~ak~ 137 (154)
T PF11791_consen 121 TLLV---------YDAFNDVAELAKA 137 (154)
T ss_dssp --TT---------CCHHHHHHHHHHT
T ss_pred hHHH---------HhhHHHHHHHHHc
Confidence 4321 1345666666655
No 413
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=73.39 E-value=40 Score=29.41 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.6
Q ss_pred cHHHHHHHHHHHhcC
Q 016465 285 MVDEALAILAILASH 299 (389)
Q Consensus 285 ~~~~a~~~L~~l~~~ 299 (389)
+.+.++..+.|+..-
T Consensus 136 ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 136 IIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHHHHHhcC
Confidence 445566666666543
No 414
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=73.38 E-value=48 Score=26.92 Aligned_cols=113 Identities=15% Similarity=0.004 Sum_probs=68.6
Q ss_pred cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHH
Q 016465 268 AGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLK 346 (389)
Q Consensus 268 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 346 (389)
+..++.+++=|...+...+-.|...+..|... ...+..-+-...+..|-.-|.+.++++...++.+|..|+..++..-.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34566666666666666677777777777655 22222222244677777888889999999999999999665543333
Q ss_pred HHHhcCcHHHHHHHHH---------------hCChHHHHHHHHHHHHHHhh
Q 016465 347 IARELDAEEALKELSE---------------SGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 347 ~~~~~~~~~~L~~ll~---------------~~~~~~~~~a~~~L~~l~~~ 382 (389)
.+.-. ...|+..++ .....+++...++|..|-+.
T Consensus 117 aLvPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~ 165 (183)
T PF10274_consen 117 ALVPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERN 165 (183)
T ss_pred HHHHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHh
Confidence 33322 222222222 22356667677777766543
No 415
>PLN02436 cellulose synthase A
Probab=73.31 E-value=2.4 Score=43.54 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=33.5
Q ss_pred cCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 13 RCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.|.||++-.- +|-+ -.|+-..||.|++-=.++++..||.|+....
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 8999998652 3433 2477779999997666678889999986643
No 416
>PLN03205 ATR interacting protein; Provisional
Probab=73.16 E-value=67 Score=29.50 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCC---chhhHHHHhhCcHHHHHHHhc-----cCChhhHHHHHHHHHHhccCCC
Q 016465 189 IPDIVDVLKNGSMEARENAAATLFSLSVI---DENKVAIGAAGAIPALIRLLC-----DGTPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 189 l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~L~~~~~ 260 (389)
+++|+.+-.-++..+...++++|..+... ++.+-.....--.-.|.+++. +....++..|+.++--+....+
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Q ss_pred ---chHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChhhHHHhh-----------ccC-------------Ch
Q 016465 261 ---NKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIG-----------QAE-------------PI 312 (389)
Q Consensus 261 ---~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~-----------~~~-------------~v 312 (389)
.++.+....+++.+.++|+. ....++..|+..|.-|...+..-..+. +.+ .+
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsIl 484 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKIF 484 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHHH
Q ss_pred HHHHHHHhcC-----ChHHHHHHHHHHHHHhhcCHHHHHHHHhc------CcHHHHHHHHHhC-ChHHH-----------
Q 016465 313 PVLMEVIRTG-----SPRNRENAAAVLWAICTGDAEQLKIAREL------DAEEALKELSESG-TDRAK----------- 369 (389)
Q Consensus 313 ~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~~~~L~~ll~~~-~~~~~----------- 369 (389)
..|.+.+... +-+++..++..|..++......-+.+... +++..+++++-+. +.+..
T Consensus 485 egLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvLvSemd~e~s~~~~~~e~~Ka 564 (652)
T PLN03205 485 EGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLLVAEIDSESTEFHPKAEIFKA 564 (652)
T ss_pred HHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHHHHHhhhhhhccCCcHHHHHH
Q ss_pred -----HHHHHHHHHHHhhHhhhh
Q 016465 370 -----RKAGSILELLQRIDMAVN 387 (389)
Q Consensus 370 -----~~a~~~L~~l~~~~~~~~ 387 (389)
+.+..+|-.|.....+..
T Consensus 565 RtLLmREaLILLNRLvSn~~ySa 587 (652)
T PLN03205 565 RTLLMREILILLNRLVSGLSSSA 587 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCcch
No 417
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=73.15 E-value=3.7 Score=29.88 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCcCcCCcccCcCCeec--------CC---ccCccHHHHHHHHhc--------CCCCCCCCCcc
Q 016465 11 DFRCPISLELMKDPVIV--------ST---GQTYERSCIQKWLDA--------GHKTCPKTQQT 55 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~--------~c---~h~~c~~ci~~~~~~--------~~~~cp~c~~~ 55 (389)
.-+|-.|.+--.+..+. .| .-.||..|+..++.+ ....||.|+..
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34677777755555432 24 556999999888853 34679999753
No 418
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=72.92 E-value=1.5 Score=37.89 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=28.1
Q ss_pred CcCcCCcccCcC-CeecCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 12 FRCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~~~-pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
-.|.-|.....- =..++|.|.||-.|-.. . ..+.||.|...+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--D-SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--C-ccccCcCcccHHH
Confidence 356666643321 12479999999999643 2 3578999976654
No 419
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.42 E-value=62 Score=27.81 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=48.2
Q ss_pred hhCcHHHHHHHhccCChh--------hHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhc--CcccHHHHHHHHHH
Q 016465 226 AAGAIPALIRLLCDGTPR--------GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA--GGGMVDEALAILAI 295 (389)
Q Consensus 226 ~~~~i~~L~~ll~~~~~~--------~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~ 295 (389)
+..+++.++++++.++.. +.+....++.. +-.|-++.|.+++.++ +.-++..|+.+|..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 456889999999755431 11111222222 3356678888888774 45578889999999
Q ss_pred Hhc-ChhhHHHhhccCChHHHHHH
Q 016465 296 LAS-HQEGKTAIGQAEPIPVLMEV 318 (389)
Q Consensus 296 l~~-~~~~~~~i~~~~~v~~L~~l 318 (389)
++. .+..|..+++ .+..++..
T Consensus 140 l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 140 LVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHcCCCCHHHHHH--HHHHHHHH
Confidence 885 4555777653 33444443
No 420
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=72.20 E-value=2.6 Score=43.35 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=33.1
Q ss_pred cCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccC
Q 016465 13 RCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTL 56 (389)
Q Consensus 13 ~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~ 56 (389)
.|-||++-.- +|-+ ..||-..||.|++-=.++|+..||.|+...
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 8999998642 3433 357778999999655567889999997654
No 421
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=72.02 E-value=62 Score=32.97 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcC-hhhHHHh-h
Q 016465 230 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAI-G 307 (389)
Q Consensus 230 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i-~ 307 (389)
...+...+.+++.......+.++.+++.-......- ...-++.-..-....-..+......+|..++.. ++....+ .
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 344444555555666666666666665432211000 111222222222222334566778888888865 4444444 4
Q ss_pred ccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcC--HHHHHHHHhcCc-------HHHHHHHHHhC----ChHHHHHHHH
Q 016465 308 QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD--AEQLKIARELDA-------EEALKELSESG----TDRAKRKAGS 374 (389)
Q Consensus 308 ~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~-------~~~L~~ll~~~----~~~~~~~a~~ 374 (389)
+.+....++.++-+++.++.+.|..+|......+ .+..+.+.+.+. ...|.++.+.. -+++-+....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~D 601 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLMD 601 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 5789999999999999999999999999877533 355566665532 33333333332 2444444555
Q ss_pred HHHHHHh
Q 016465 375 ILELLQR 381 (389)
Q Consensus 375 ~L~~l~~ 381 (389)
+|..|++
T Consensus 602 Ii~~Lcd 608 (727)
T PF12726_consen 602 IIEVLCD 608 (727)
T ss_pred HHHHHcC
Confidence 5555543
No 422
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.94 E-value=1.4e+02 Score=31.58 Aligned_cols=197 Identities=22% Similarity=0.249 Sum_probs=114.9
Q ss_pred chhHHHHHHHhhcCCC--------HH----HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcC--------C--C
Q 016465 102 DRAAIDALLGKLANGN--------VE----EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--------T--D 159 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~--------~~----~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~--------~--~ 159 (389)
+...+-.++..|+++- -+ .....+.+++.+..-+...+..+.+.+++..|...|.. + +
T Consensus 718 hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesD 797 (2799)
T KOG1788|consen 718 HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESD 797 (2799)
T ss_pred cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchh
Confidence 4455667777777631 12 23334455666666666778889999999998888743 1 1
Q ss_pred hHHHHHHHHHHHhc-----cccccccchhcccCChHHHHHHHcc--------------------------CCHHHHHHHH
Q 016465 160 PRTQEHAVTALLNL-----SINDSNKGTIVNAGAIPDIVDVLKN--------------------------GSMEARENAA 208 (389)
Q Consensus 160 ~~~~~~a~~~L~~l-----~~~~~~~~~i~~~g~l~~L~~lL~~--------------------------~~~~~~~~a~ 208 (389)
.-+...-...|..+ +.+..++..+...=.-+.+..+|.. +.-..-..|+
T Consensus 798 lcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAc 877 (2799)
T KOG1788|consen 798 LCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAAC 877 (2799)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHH
Confidence 11112222233222 3344444433211111222222221 1111122344
Q ss_pred HHHHHhc-----------CCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCC-chHHHHhcCCcHHHHH
Q 016465 209 ATLFSLS-----------VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMR 276 (389)
Q Consensus 209 ~~L~~Ls-----------~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~i~~L~~ 276 (389)
..+..+- ...+.+..+...|++..+++.+-...++.+..-+..+..++..++ +....-..|.++.|++
T Consensus 878 aeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellle 957 (2799)
T KOG1788|consen 878 AEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLE 957 (2799)
T ss_pred HHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHH
Confidence 4444331 112345677888999999999888888999999999999988554 5566666799999888
Q ss_pred HHhh---cCcccHHHHHHHHHHHhc
Q 016465 277 FLKD---AGGGMVDEALAILAILAS 298 (389)
Q Consensus 277 ll~~---~~~~~~~~a~~~L~~l~~ 298 (389)
++.- .+.....++++++.-|+.
T Consensus 958 IiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 958 IIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HhhhhhcCCchHhhccHHHHHHHhh
Confidence 7753 455566777777776664
No 423
>PLN02195 cellulose synthase A
Probab=71.79 E-value=2.9 Score=42.63 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=34.7
Q ss_pred CcCcCCcccC-----cCCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 12 FRCPISLELM-----KDPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~-----~~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
-.|-||++.. -+|-+ -.|+...||.|.+-=.++|+..||.|+....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4799999854 24543 3588889999996555678899999987765
No 424
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=71.68 E-value=85 Score=29.03 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred HHHHHHhccCC-hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh----------cCcccHHHHHHHHHHHhcC
Q 016465 231 PALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----------AGGGMVDEALAILAILASH 299 (389)
Q Consensus 231 ~~L~~ll~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~~~~a~~~L~~l~~~ 299 (389)
..++..|.++. ...+...+..+.-|+.+.....-+.....+..|+.+-.- ++..+...++++|.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 55666665554 344556677777777665544444333333444433221 2346788999999999965
Q ss_pred h-hhHHHhhccCChHHHHHHHhcC-----ChHHHHHHHHHHHHHhhcCHHH-HHHHHhcCcHHHHHHHHHhC---C----
Q 016465 300 Q-EGKTAIGQAEPIPVLMEVIRTG-----SPRNRENAAAVLWAICTGDAEQ-LKIARELDAEEALKELSESG---T---- 365 (389)
Q Consensus 300 ~-~~~~~i~~~~~v~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~---~---- 365 (389)
. ..+....+......+++.+... ..+++..=+..|.-+..-.++. .+.+.+.++++.+...+.+. +
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 4 4566667766666666665432 1234444555555555544444 45666778999999988753 1
Q ss_pred -----hHHHHHHHHHHHHHHh
Q 016465 366 -----DRAKRKAGSILELLQR 381 (389)
Q Consensus 366 -----~~~~~~a~~~L~~l~~ 381 (389)
++--..|.++|+.+.+
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFN 228 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 1445567777776643
No 425
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=71.34 E-value=2.5 Score=21.87 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=5.1
Q ss_pred cCcCCcccC
Q 016465 13 RCPISLELM 21 (389)
Q Consensus 13 ~Cpic~~~~ 21 (389)
+||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666544
No 426
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=70.71 E-value=5 Score=39.65 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=39.4
Q ss_pred CCCCCC-CCCCcCcCCcc--cCcCCeecCCccC-----ccHHHHHHHHhc-CCCCCCCCCccCc
Q 016465 3 HRSPVI-PDDFRCPISLE--LMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLL 57 (389)
Q Consensus 3 ~~~~~~-~~~~~Cpic~~--~~~~pv~~~c~h~-----~c~~ci~~~~~~-~~~~cp~c~~~~~ 57 (389)
++..++ .+.-+|.||+. .-.+|..-||..+ ..+.|+-+|..- +..+|-.|..+..
T Consensus 3 ~~~~~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 3 KENTPMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CCCCCCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 333333 34478999885 5578888887654 478999999984 4568999987754
No 427
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=70.08 E-value=3.6 Score=22.65 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.9
Q ss_pred CCCCCCCCCcc
Q 016465 45 GHKTCPKTQQT 55 (389)
Q Consensus 45 ~~~~cp~c~~~ 55 (389)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35679999764
No 428
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.95 E-value=9.3 Score=27.82 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHH
Q 016465 204 RENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKK 246 (389)
Q Consensus 204 ~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 246 (389)
....+..+..|+..++....+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567788888999999889999999999999999998877643
No 429
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=69.81 E-value=2.3 Score=26.14 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=11.2
Q ss_pred CCCCCCcCcCCcc
Q 016465 7 VIPDDFRCPISLE 19 (389)
Q Consensus 7 ~~~~~~~Cpic~~ 19 (389)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 430
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.16 E-value=4.7 Score=35.44 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCCcCcCCcccCcCCeecCCccCccHHHHHHHHhc-CCCCCCCCCccC
Q 016465 9 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQTL 56 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~-~~~~cp~c~~~~ 56 (389)
++.-.|-||-+-+.=.-.+||+|..|-.|-.+.-.- ....||.|+...
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 455689999887766567899999999998765542 346799998664
No 431
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.14 E-value=36 Score=26.07 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=34.7
Q ss_pred hHHHHHHHccCC----HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016465 189 IPDIVDVLKNGS----MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 189 l~~L~~lL~~~~----~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
+..+.+.+.... .+....++.++..... .-....+.+.+.++.+.+++.+ +..+..|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 444444444322 5667777777777655 2233444556677777777743 34566666554
No 432
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.91 E-value=35 Score=31.03 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=78.9
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-------ChhhHHHHHHHHHHhccCCC
Q 016465 188 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLSIYQG 260 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~L~~~~~ 260 (389)
+...+.+.+.+.+...+..| |..|..++.. ...+|.++.++.+. +.......+.++..|..++.
T Consensus 179 yf~~It~a~~~~~~~~r~~a---L~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 179 YFEEITEALVGSNEEKRREA---LQSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHH---HHHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555555544 4444433322 23456777766532 45556667788888888887
Q ss_pred chHHHHhcCCcHHHHHHHhh----c------CcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC--hHHHH
Q 016465 261 NKARAVRAGIVPPLMRFLKD----A------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS--PRNRE 328 (389)
Q Consensus 261 ~~~~~~~~~~i~~L~~ll~~----~------~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~--~~~~~ 328 (389)
......-+.+++.++.++-. . +..+++.|..+|..++..-.....-+...+...+.+.+.+.. .....
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 66665556688888887744 1 236788999999998842211111111123345555554432 22244
Q ss_pred HHHHHHHHH
Q 016465 329 NAAAVLWAI 337 (389)
Q Consensus 329 ~a~~~L~~l 337 (389)
-|+..|..|
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 555555544
No 433
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.52 E-value=54 Score=30.19 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhc------CCChHHHHHHHHHHHhccccccccch-----------
Q 016465 120 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLNLSINDSNKGT----------- 182 (389)
Q Consensus 120 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~------~~~~~~~~~a~~~L~~l~~~~~~~~~----------- 182 (389)
-+..|+..|..++....+.-..+ ....+-.+|. ..+..-+..|+..++.|+........
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 35667777778876322221111 1123333333 24667788999999998765432221
Q ss_pred --hcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHH
Q 016465 183 --IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 252 (389)
Q Consensus 183 --i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 252 (389)
+...-++|.|. --.+..+-++..|++.+..+...-+ +. .-.++++.+++.|.+++.-+...|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KE--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HH--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11122333332 1013356678888888877643311 11 1246899999999999988888888764
No 434
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.65 E-value=4.5 Score=31.86 Aligned_cols=31 Identities=19% Similarity=0.713 Sum_probs=24.6
Q ss_pred cCCccCccHHHHHHHHhc-----CC-----CCCCCCCccCc
Q 016465 27 VSTGQTYERSCIQKWLDA-----GH-----KTCPKTQQTLL 57 (389)
Q Consensus 27 ~~c~h~~c~~ci~~~~~~-----~~-----~~cp~c~~~~~ 57 (389)
..||..|..-|+..|+.. .. ..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 469999999999999973 11 15999988865
No 435
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=67.58 E-value=4 Score=32.29 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.7
Q ss_pred CCCCCCCCCccCcCC
Q 016465 45 GHKTCPKTQQTLLHT 59 (389)
Q Consensus 45 ~~~~cp~c~~~~~~~ 59 (389)
.+|.||.|+.++...
T Consensus 127 ~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 127 LNFTCPRCGAMLDYL 141 (158)
T ss_pred cCCcCCCCCCEeeec
Confidence 379999999887543
No 436
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=67.49 E-value=1e+02 Score=29.62 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=86.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCchh
Q 016465 149 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN--------GSMEARENAAATLFSLSVIDEN 220 (389)
Q Consensus 149 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~ 220 (389)
..+.+.+...++..+..|+..|..=+ .- .-.+|.++.++.. .+-....+.+..++.|..++..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~TDs----GL-----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLETDS----GL-----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhccCc----cH-----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 44445555577788888887774311 10 1135556666643 3456677888888888877654
Q ss_pred hHHHHhhCcHHHHHHHhccC----------ChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcC--cccHHH
Q 016465 221 KVAIGAAGAIPALIRLLCDG----------TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAG--GGMVDE 288 (389)
Q Consensus 221 ~~~~~~~~~i~~L~~ll~~~----------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~ 288 (389)
.-.-.-...++.++.++-+. .-.+|.-|+..+..++.+-...-.-....++..+.+.+.+.. .....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 44434456677777776432 234677788888888876665555566777888888887642 233344
Q ss_pred HHHHHHHHhc
Q 016465 289 ALAILAILAS 298 (389)
Q Consensus 289 a~~~L~~l~~ 298 (389)
++..|..|..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 5555555543
No 437
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.09 E-value=55 Score=25.04 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhccccccccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc---------hhh-HH----HHh-
Q 016465 162 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID---------ENK-VA----IGA- 226 (389)
Q Consensus 162 ~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~---------~~~-~~----~~~- 226 (389)
++...+.++..++..+-... =.+.++.++..+++ ++......+.+|..+.+.- ..+ .. +.+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~---Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ---WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT---STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh---CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 45566666666654331000 03467778888876 4555555666666554221 111 11 111
Q ss_pred -hCcHHHHHHHhccCC----hhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHH
Q 016465 227 -AGAIPALIRLLCDGT----PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 293 (389)
Q Consensus 227 -~~~i~~L~~ll~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 293 (389)
..++..+.+.+.... .+....++.++..... --....+...+.++.+.++|. +++.++.|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 144555555554332 6778888888888776 234455666778899999884 666788888775
No 438
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=66.98 E-value=2.6e+02 Score=32.79 Aligned_cols=250 Identities=13% Similarity=0.072 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhhChhhhHHHHhcCCHH-HHHHHhcCCChHHHHHHHHHHHhccccccccchhccc--CChHHHHHHH-
Q 016465 121 QRAAAGELRLLAKRNADNRVCIAEAGAIP-LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNA--GAIPDIVDVL- 196 (389)
Q Consensus 121 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~-~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~l~~L~~lL- 196 (389)
...|.+.+..+-........ .+. .+...+...+.+++..+...+..+............. ..+..++..+
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTL------FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 45566666665542211111 122 2445667778899988877766654433332111111 1133333322
Q ss_pred ----ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCch-HHHHhcCCc
Q 016465 197 ----KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIV 271 (389)
Q Consensus 197 ----~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~i 271 (389)
.++++.++......+. ...-.+..+.+.+..+...+.++.-.++..+...+++++..+... ........+
T Consensus 535 ~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l 609 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLL 609 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHH
Confidence 2345554443322222 233334555666777777777777888888888888887754411 111111112
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHHHh-cChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh
Q 016465 272 PPLMRFLKDAGGGMVDEALAILAILA-SHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE 350 (389)
Q Consensus 272 ~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 350 (389)
..+-++..+....+.+....-+..+. ..+..-...+ ...+..++..++..+..+...+..++..||..+.+......+
T Consensus 610 ~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~ 688 (2341)
T KOG0891|consen 610 ELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD 688 (2341)
T ss_pred HHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc
Confidence 22222222211111222111111111 1111111111 234577777778877788888888999988865433333333
Q ss_pred cCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhhH
Q 016465 351 LDAEEALKELSESG-TDRAKRKAGSILELLQRID 383 (389)
Q Consensus 351 ~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~ 383 (389)
..++.+.+.+.+. ...-+..+.+.+..+.+..
T Consensus 689 -~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 689 -ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred -hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 4555555555544 4455666778887776543
No 439
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=66.39 E-value=2.4 Score=25.63 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=8.7
Q ss_pred CCCCCCCcCcCCcc
Q 016465 6 PVIPDDFRCPISLE 19 (389)
Q Consensus 6 ~~~~~~~~Cpic~~ 19 (389)
..+|+++.||+|.-
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 36899999999974
No 440
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.25 E-value=3.4 Score=28.40 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.6
Q ss_pred CccHHHHHHHHhc
Q 016465 32 TYERSCIQKWLDA 44 (389)
Q Consensus 32 ~~c~~ci~~~~~~ 44 (389)
.|||.|+..|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 441
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=65.10 E-value=3.6 Score=31.08 Aligned_cols=44 Identities=18% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCcCcCCcccCcC--Cee-cCCc------cCccHHHHHHHHhcCCCCCCCCCcc
Q 016465 11 DFRCPISLELMKD--PVI-VSTG------QTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 11 ~~~Cpic~~~~~~--pv~-~~c~------h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
...|.||.+-..+ =|+ ++|| |.||..|+.+|-.+ ...-|-=|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccce
Confidence 6789999998876 443 5665 46999999999543 3345554443
No 442
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.06 E-value=96 Score=29.83 Aligned_cols=141 Identities=11% Similarity=0.013 Sum_probs=81.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--------ChHHHHHHHHHHHhcccc
Q 016465 105 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--------DPRTQEHAVTALLNLSIN 176 (389)
Q Consensus 105 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--------~~~~~~~a~~~L~~l~~~ 176 (389)
....+++.+.++|+..+.+|+..|..=+. ... .+|.++.++..+ +.++....+.+.+.|..+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsG-----L~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETDSG-----LQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCcc-----HHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 45666777777787788877776653221 111 356777776542 455667777777777766
Q ss_pred ccccchhcccCChHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC--Chhh
Q 016465 177 DSNKGTIVNAGAIPDIVDVLKN----------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRG 244 (389)
Q Consensus 177 ~~~~~~i~~~g~l~~L~~lL~~----------~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~ 244 (389)
+...-.---...+|.++.++-+ ....+|..|+..+..++.+......-.+.-++..+...+.+. ....
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchh
Confidence 5433221113356777666632 235688899999888876544333334445566666666544 2333
Q ss_pred HHHHHHHHHHh
Q 016465 245 KKDAATAIFNL 255 (389)
Q Consensus 245 ~~~a~~~L~~L 255 (389)
..-++..|..|
T Consensus 358 ~YGai~gL~~l 368 (576)
T KOG2549|consen 358 HYGAIAGLSEL 368 (576)
T ss_pred hhhHHHHHHHh
Confidence 33444444444
No 443
>PLN02400 cellulose synthase
Probab=63.52 E-value=3.4 Score=42.64 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=33.3
Q ss_pred cCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 13 RCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 13 ~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.|-||++-.- +|-+ -.|+-..||.|++-=.++|+..||.|+....
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 8999998652 3433 2477789999996555578889999986643
No 444
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=62.91 E-value=5.2 Score=41.20 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCcCcCCcccCc-----CCee--cCCccCccHHHHHHHHhcCCCCCCCCCccCc
Q 016465 11 DFRCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 57 (389)
Q Consensus 11 ~~~Cpic~~~~~-----~pv~--~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~ 57 (389)
.-.|-||++-.- +|-+ -.|+-..||.|++-=.++++..||.|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 357999998642 4443 2577789999996555678889999987654
No 445
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=62.86 E-value=47 Score=29.98 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHhhC--cHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCchHHHHh-------cCC
Q 016465 203 ARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVR-------AGI 270 (389)
Q Consensus 203 ~~~~a~~~L~~Ls~~~~~~~~~~~~~--~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~-------~~~ 270 (389)
++..|+.++..+.........+...+ ++..|++++.-+ ...++..|+.+|..++........++. +|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 34455566666665666677776665 999999999754 467889999999999986654444442 455
Q ss_pred cHHHHH
Q 016465 271 VPPLMR 276 (389)
Q Consensus 271 i~~L~~ 276 (389)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555544
No 446
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.68 E-value=2e+02 Score=31.71 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=108.1
Q ss_pred ccchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHhccccc
Q 016465 100 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIND 177 (389)
Q Consensus 100 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~ 177 (389)
..+.+....+...+++.|+.++..|.+++.....+-..-.+.....-.+..++.+.+++ +++.|--.+-+|
T Consensus 1435 fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~al------- 1507 (1758)
T KOG1791|consen 1435 FVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICAL------- 1507 (1758)
T ss_pred hhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHH-------
Confidence 34556667777777788888888887777666543222112222222233333333332 111111111111
Q ss_pred cccchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC---hhhHHHHHHHHHH
Q 016465 178 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT---PRGKKDAATAIFN 254 (389)
Q Consensus 178 ~~~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~ 254 (389)
++.....++-.++..........|+. ..+.+-.++|.+-+.+.+.. ...|+.....+..
T Consensus 1508 ----------F~A~~~~ill~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~ 1569 (1758)
T KOG1791|consen 1508 ----------FIAFFSDILLVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSK 1569 (1758)
T ss_pred ----------HHHHHHHHHcCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhhhHHHHHH
Confidence 12223334444433332222222221 22334455666666665442 2356666777776
Q ss_pred hccCCCchHHHHhcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcChhhHHHh-hccCChHHHHHHHhcC
Q 016465 255 LSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAI-GQAEPIPVLMEVIRTG 322 (389)
Q Consensus 255 L~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~~~v~~L~~ll~~~ 322 (389)
..............+....++....+ .+...+...+.+|.+-...+.....+ ...|....+..++.+.
T Consensus 1570 glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1570 GLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred HhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 66666666767778888888887765 34455567778888777776554444 4578899999999886
No 447
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=62.67 E-value=99 Score=31.55 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=65.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCc-hHHHH-h
Q 016465 190 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-KARAV-R 267 (389)
Q Consensus 190 ~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~-~ 267 (389)
..+...+..++.......+.++.++..-......- ...-++.-..-.+..-..+......+|..++.-+.. ...+. +
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 33444445556666666666666665332211110 111111222222222234555667788888875443 34444 4
Q ss_pred cCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhH
Q 016465 268 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 303 (389)
Q Consensus 268 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 303 (389)
.+....++.++.++++++.+.|..+|..... .++|
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 6889999999999999999999999999886 4433
No 448
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=62.59 E-value=21 Score=31.67 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=45.7
Q ss_pred cchhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC--------------hhhhHHHHhcCCHHHHHHHhcC
Q 016465 101 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN--------------ADNRVCIAEAGAIPLLVELLSS 157 (389)
Q Consensus 101 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~--------------~~~~~~~~~~g~v~~L~~lL~~ 157 (389)
.+...+..++..|.+++...+..|+++|..++.+. ..|...+.+.|+++.|..+|..
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46788999999999999999999999999988643 1344456677888888888865
No 449
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=61.78 E-value=3.4 Score=32.01 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=16.8
Q ss_pred CCccCccHHHHHHHHhc----------CCCCCCCCCcc
Q 016465 28 STGQTYERSCIQKWLDA----------GHKTCPKTQQT 55 (389)
Q Consensus 28 ~c~h~~c~~ci~~~~~~----------~~~~cp~c~~~ 55 (389)
.+||.| +.||.. +--.||+|+..
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 367888 678863 44689999865
No 450
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.62 E-value=91 Score=31.64 Aligned_cols=171 Identities=14% Similarity=0.219 Sum_probs=82.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHhccccc-cccchhcccCChHH--------HHHHHccC----CHHHHHHHHHHHHH
Q 016465 147 AIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPD--------IVDVLKNG----SMEARENAAATLFS 213 (389)
Q Consensus 147 ~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~l~~--------L~~lL~~~----~~~~~~~a~~~L~~ 213 (389)
.+|.++..|+.+...+-..|+.++-.+..-. +....+...+-+.+ |.+.++.+ ++-+.....+.+.-
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 5778888888888888888888888765433 33444443332222 22222222 23333333333332
Q ss_pred hcCCchhhHHHHhhCcHHHHHHHh----ccC-ChhhHHH---HHHHHHH-hccCCCchHHHHhcCCcHHHHHHHhhcCcc
Q 016465 214 LSVIDENKVAIGAAGAIPALIRLL----CDG-TPRGKKD---AATAIFN-LSIYQGNKARAVRAGIVPPLMRFLKDAGGG 284 (389)
Q Consensus 214 Ls~~~~~~~~~~~~~~i~~L~~ll----~~~-~~~~~~~---a~~~L~~-L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 284 (389)
+ ++.... .....+..|.+++ +++ ++..-.. +..++.+ .+..+.......+...+|.+-..|...-.+
T Consensus 579 ~---~~~i~p-~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E 654 (960)
T KOG1992|consen 579 L---QSAIIP-HAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE 654 (960)
T ss_pred C---HHhhhh-hhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 211100 0112233333333 333 3333332 3333333 333333334444556677777777665555
Q ss_pred cHHHHHHHHHHHhcChhh--------------HHHhhc-cCChHHHHHHHhc
Q 016465 285 MVDEALAILAILASHQEG--------------KTAIGQ-AEPIPVLMEVIRT 321 (389)
Q Consensus 285 ~~~~a~~~L~~l~~~~~~--------------~~~i~~-~~~v~~L~~ll~~ 321 (389)
..-+++.+++.+.....+ ...+.+ .|-++.++.+++.
T Consensus 655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 666777777666533222 122333 5677777777654
No 451
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.50 E-value=2.8 Score=36.12 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=33.8
Q ss_pred CCCcCcCCcccC-cCC-ee-cCCccCccHHHHHHHHhc----------------------CCCCCCCCCccCc
Q 016465 10 DDFRCPISLELM-KDP-VI-VSTGQTYERSCIQKWLDA----------------------GHKTCPKTQQTLL 57 (389)
Q Consensus 10 ~~~~Cpic~~~~-~~p-v~-~~c~h~~c~~ci~~~~~~----------------------~~~~cp~c~~~~~ 57 (389)
..-.|-||+--| ..| .+ ++|.|-|.-.|+-+|+.. ....||+|+..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 346899999755 445 33 689998888888777652 1135999987764
No 452
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.86 E-value=90 Score=29.67 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=55.9
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-hHHHHhcCCHHHHHHHhcCC--ChHHHHHHHHHHHh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLN 172 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~~L~~lL~~~--~~~~~~~a~~~L~~ 172 (389)
+++..|.+.+++.++.++..|+..|-.+.+..... ...+.+.+++.-++.+.+.. +..+|+.++.+|..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 67888999999888899999999888887765554 44777888999999988765 67889998888754
No 453
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.70 E-value=4.9 Score=34.33 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCCCcCcCCcccCcCCeecCC----ccCccHHHHHHHHhc----CCCCCCC
Q 016465 9 PDDFRCPISLELMKDPVIVST----GQTYERSCIQKWLDA----GHKTCPK 51 (389)
Q Consensus 9 ~~~~~Cpic~~~~~~pv~~~c----~h~~c~~ci~~~~~~----~~~~cp~ 51 (389)
...+.|-+|++-+.|..+..| .|-||-.|-.+..+. +...||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 344899999999999877644 699999998888774 2334666
No 454
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.16 E-value=97 Score=31.83 Aligned_cols=151 Identities=15% Similarity=0.046 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHh----ccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhh
Q 016465 205 ENAAATLFSLSVIDENKVAIGAAGAIPALIRLL----CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD 280 (389)
Q Consensus 205 ~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~ 280 (389)
..++.+|.-|.++.+.-..+.+.|. ..++-++ ..++..+.-.++..|+.|+.+.+....+++.|+|..|+.+=.
T Consensus 327 ~~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr- 404 (1516)
T KOG1832|consen 327 KYCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPR- 404 (1516)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCC-
Confidence 3455566655555544444444443 2222222 234566777889999999999888899999999887765432
Q ss_pred cCcccHHHH---HHHHHHHhcChhhHHHhh------ccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhc
Q 016465 281 AGGGMVDEA---LAILAILASHQEGKTAIG------QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL 351 (389)
Q Consensus 281 ~~~~~~~~a---~~~L~~l~~~~~~~~~i~------~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 351 (389)
+.+.+ -.+|..|......-+.+. -+.++..-+.++.......+.++..... .|..-......+-..
T Consensus 405 ----~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~ 479 (1516)
T KOG1832|consen 405 ----VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQ 479 (1516)
T ss_pred ----chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhh
Confidence 22222 234444444333222221 1235555566666655555544443322 222222333444445
Q ss_pred CcHHHHHHHHH
Q 016465 352 DAEEALKELSE 362 (389)
Q Consensus 352 ~~~~~L~~ll~ 362 (389)
+.+..|+.++.
T Consensus 480 d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 480 DSLQKLLAILK 490 (1516)
T ss_pred hHHHHHHHHHH
Confidence 66677776664
No 455
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=58.95 E-value=1.1e+02 Score=25.87 Aligned_cols=128 Identities=17% Similarity=0.062 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-------------C-hhhH----HHHHHHHHHhccCCCch
Q 016465 201 MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------------T-PRGK----KDAATAIFNLSIYQGNK 262 (389)
Q Consensus 201 ~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-------------~-~~~~----~~a~~~L~~L~~~~~~~ 262 (389)
......++..+..|...++....+...+.++.+.+.|..- + ..+. ..=...|+.++.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4445567777778877777777777778888887777532 1 1111 12245788899998888
Q ss_pred HHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhccCChH-HHHHHHhcCChHHHHHHHHHHHHHh
Q 016465 263 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIP-VLMEVIRTGSPRNRENAAAVLWAIC 338 (389)
Q Consensus 263 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~-~L~~ll~~~~~~~~~~a~~~L~~l~ 338 (389)
..+-+.++...+.++....+. .....-+|.+|=...+ |-.. .|-+.|.+++..+|..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~--------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD--------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc--------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888889999999999876432 2233334444432221 2222 3445567788899999998887764
No 456
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.78 E-value=1.7 Score=28.91 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=8.9
Q ss_pred CcCcCCcccCcC
Q 016465 12 FRCPISLELMKD 23 (389)
Q Consensus 12 ~~Cpic~~~~~~ 23 (389)
+.||+|.-.|..
T Consensus 2 llCP~C~v~l~~ 13 (88)
T COG3809 2 LLCPICGVELVM 13 (88)
T ss_pred cccCcCCceeee
Confidence 469999876654
No 457
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=58.69 E-value=84 Score=30.59 Aligned_cols=134 Identities=12% Similarity=-0.082 Sum_probs=80.9
Q ss_pred CChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHHHHHHHHHHHhcChhhHHHhhc--cCChHHHHH
Q 016465 240 GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLME 317 (389)
Q Consensus 240 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~v~~L~~ 317 (389)
-++.++..+...|.--+..-+ ..+..-.++...--+|.+.+..++.....+|..|+...+....+.+ +.+-..+++
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP--~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE 364 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVP--DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILE 364 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcch--HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 356677777766665443211 2233333555555677778889999999999999987777664433 345667788
Q ss_pred HHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 318 VIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 318 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
++..+..-+|..+...+..+..-. .++...+..+..++-+..++-++...+.+..+++
T Consensus 365 ~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 365 FLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 887765558888887777664422 1111233444455555555544444444444443
No 458
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=6.5 Score=36.48 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=44.9
Q ss_pred CCCCCCcCcCC-cccCcCCeec--CCccCccHHHHHHHHhcCCCCCCCCCccCc-CCCCCccHHHHHHHHHHHH
Q 016465 7 VIPDDFRCPIS-LELMKDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCE 76 (389)
Q Consensus 7 ~~~~~~~Cpic-~~~~~~pv~~--~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~-~~~~~~n~~~~~~i~~~~~ 76 (389)
..++.++|++| ...|.+...+ .|..+||..||...+.. ..|+.|...-. ...+.++..++..+....+
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHHHh
Confidence 46788999999 7788887765 58999999999988764 33555543322 2234455555555555433
No 459
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=58.31 E-value=85 Score=24.28 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=56.8
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhCh-hhhHHHHhcCCHHH-HHHHhcC---CChHHHHHHHHHHHhccc
Q 016465 103 RAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 103 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~-L~~lL~~---~~~~~~~~a~~~L~~l~~ 175 (389)
..++..+.+.|++ .++.++..|+..|-.+..... .....+...+++.. |++++.. .+..++..++..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 5678888888874 589999999999999987654 45666777788987 9999964 245788888888877653
No 460
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=57.95 E-value=1.8e+02 Score=27.85 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=59.8
Q ss_pred HHHHHHHhh--cCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcC------ChHHHHHHHHHHHHHhhcCHH
Q 016465 272 PPLMRFLKD--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG------SPRNRENAAAVLWAICTGDAE 343 (389)
Q Consensus 272 ~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~ 343 (389)
+.++..|-+ ...+....+..++.||+....+.. .+..|..+|.+. +..+-.-|+.++..+..+..+
T Consensus 216 ~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 216 SPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred HHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 445555543 344777888899999997655433 456777777322 234456777788777665421
Q ss_pred HH-HHHHhc--CcHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 016465 344 QL-KIAREL--DAEEALKELSESGTDRAKRKAGSILELLQ 380 (389)
Q Consensus 344 ~~-~~~~~~--~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 380 (389)
.. ..+--. -+++.+...++.+++.+-......+..+-
T Consensus 290 ~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 290 QGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred CCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 11 111111 26667777777766666555555555554
No 461
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.86 E-value=1.7e+02 Score=27.50 Aligned_cols=79 Identities=8% Similarity=0.045 Sum_probs=51.6
Q ss_pred cchhcccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 016465 180 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIY 258 (389)
Q Consensus 180 ~~~i~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~ 258 (389)
.....+...+..|+.+++++|+..|...-.+|.++-..-..............+.+.+.+. ........+..++.+..+
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 4455667789999999999999999999999888754433333444444555666666533 455566677777776553
No 462
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=57.69 E-value=1.8e+02 Score=27.89 Aligned_cols=232 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred CHHHHHHHhcCC-ChHHHHHHHHHHHhc-----------cccccccchhcccCChHHHHHHHccC--------CHHHHHH
Q 016465 147 AIPLLVELLSST-DPRTQEHAVTALLNL-----------SINDSNKGTIVNAGAIPDIVDVLKNG--------SMEAREN 206 (389)
Q Consensus 147 ~v~~L~~lL~~~-~~~~~~~a~~~L~~l-----------~~~~~~~~~i~~~g~l~~L~~lL~~~--------~~~~~~~ 206 (389)
+|..+.++++.. ...++.++++.|+.| +.-+..-..+-+..+|.+.+.++-.+ .+.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Q ss_pred HHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccH
Q 016465 207 AAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 286 (389)
Q Consensus 207 a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 286 (389)
++..+........ ...+--.-.+.+|.++ +..++++..++.....=+....+...++..-+.|+++.-+........
T Consensus 178 vl~~ia~vgeS~q-yPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~~L 254 (589)
T PF11229_consen 178 VLKPIATVGESYQ-YPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKKYL 254 (589)
T ss_pred HHHHhhhcCCCCC-CCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHHHH
Q ss_pred HHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHh--cCcHHHHHHHH---
Q 016465 287 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE--LDAEEALKELS--- 361 (389)
Q Consensus 287 ~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll--- 361 (389)
-..+.....-...+.. +.+++.-++..+-..-.-.+++....++.-|.. +...|.-.+.... .....++..++
T Consensus 255 ~~Sl~~wmkhVsedqi-Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq-AMKlP~P~~h~Ws~Lc~ttekIF~lLPn~ 332 (589)
T PF11229_consen 255 FESLSLWMKHVSEDQI-QAFVENLMVQQFKAASRPSNPELCQSALQGLSQ-AMKLPSPAQHCWSLLCETTEKIFDLLPNK 332 (589)
T ss_pred HHHHHHHHhhCCHHHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHHHHhCccc
Q ss_pred -HhCChHHHHHHHHHHHHHHhhH
Q 016465 362 -ESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 362 -~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
+..+-+.-...+++|..|...+
T Consensus 333 i~~~eveLYi~vAkCLSEMtd~e 355 (589)
T PF11229_consen 333 IQRNEVELYIGVAKCLSEMTDTE 355 (589)
T ss_pred ccHHHHHHHHHHHHHHhhcCHHH
No 463
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.65 E-value=77 Score=23.57 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=41.5
Q ss_pred CcHHHHHHHh-hcCcccHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHh-cCChHH-HHHHHHHHHHHhhcC
Q 016465 270 IVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRN-RENAAAVLWAICTGD 341 (389)
Q Consensus 270 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~-~~~~~~-~~~a~~~L~~l~~~~ 341 (389)
++|.+.+.|. +..++.+..+..++..|+....-... ++..+++-+- +..... ...++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3566777777 56778888899999999875544333 3344444332 222222 367888888877643
No 464
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.80 E-value=35 Score=32.34 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=55.8
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHHhhcCH-HHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 016465 310 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESG--TDRAKRKAGSILELL 379 (389)
Q Consensus 310 ~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l 379 (389)
.++..|.+.+.+.++.++..|+.+|-.+..+.. .....+.+.+++.-++.+.... +..+|+++..+|..=
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 367788888888888999999998888887754 4445888889999988888765 678999888887654
No 465
>PF12773 DZR: Double zinc ribbon
Probab=56.78 E-value=10 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=18.5
Q ss_pred CcCCcccCcCCeecCCccCccHHHHHHHH--hcCCCCCCCCCccCc
Q 016465 14 CPISLELMKDPVIVSTGQTYERSCIQKWL--DAGHKTCPKTQQTLL 57 (389)
Q Consensus 14 Cpic~~~~~~pv~~~c~h~~c~~ci~~~~--~~~~~~cp~c~~~~~ 57 (389)
||-|+..+.+ +..||..|=.... ......||.|+..+.
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 4555555433 2334554443333 122346888876654
No 466
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=56.76 E-value=1.4e+02 Score=26.49 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHHhhCcHHHHHHHhcc-------C----------------ChhhHHHHHHHHHHhccCCCchHH--------------
Q 016465 222 VAIGAAGAIPALIRLLCD-------G----------------TPRGKKDAATAIFNLSIYQGNKAR-------------- 264 (389)
Q Consensus 222 ~~~~~~~~i~~L~~ll~~-------~----------------~~~~~~~a~~~L~~L~~~~~~~~~-------------- 264 (389)
..+++.|.|+.|-+++.. . +...+..-++.+.+++....+...
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 455666777777776642 0 112455667777777774322211
Q ss_pred --------HHhcCCcHHHHHHHhh--cCcccHHHHHHHHHHHhcChhh---HHHhhccCChHHHHHHHhcC---ChHHHH
Q 016465 265 --------AVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQEG---KTAIGQAEPIPVLMEVIRTG---SPRNRE 328 (389)
Q Consensus 265 --------~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~~~v~~L~~ll~~~---~~~~~~ 328 (389)
--+.|.+..+++.+.. .+...+-....++....+.+.. +..+.+.|.++.++.-+-++ +..+.+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1124667778887765 3445566677777777755443 44567799999999988765 346788
Q ss_pred HHHHHHHHHhhcCHHHHHHH
Q 016465 329 NAAAVLWAICTGDAEQLKIA 348 (389)
Q Consensus 329 ~a~~~L~~l~~~~~~~~~~~ 348 (389)
....+|+.|...+...-..+
T Consensus 163 ~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 99999999999886554433
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.58 E-value=5.1 Score=40.13 Aligned_cols=37 Identities=16% Similarity=0.413 Sum_probs=29.3
Q ss_pred CCCCCCcCcCCcccC-cCCe-ecCCccCccHHHHHHHHh
Q 016465 7 VIPDDFRCPISLELM-KDPV-IVSTGQTYERSCIQKWLD 43 (389)
Q Consensus 7 ~~~~~~~Cpic~~~~-~~pv-~~~c~h~~c~~ci~~~~~ 43 (389)
.+...-+|.+|...+ ..|- ..+|||.|.+.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 355667899999855 5565 479999999999998765
No 468
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=56.51 E-value=2.1 Score=37.88 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=20.7
Q ss_pred CCCcCcCCcccCcCCeecCC---c--cCccHHHHHHHHhcCCCCCCCCCcc
Q 016465 10 DDFRCPISLELMKDPVIVST---G--QTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~~c---~--h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
..-.||+|+....--+...- | +-+|..|=.+|.-. ...||.|+..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 34799999986554443322 4 46788999999764 4579999865
No 469
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.11 E-value=2.4e+02 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAK 133 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~ 133 (389)
..+|.++.+|.++..-+...|+.++-.+-.
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 578999999999888889899998887653
No 470
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=54.99 E-value=5.6 Score=37.24 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 016465 315 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 381 (389)
Q Consensus 315 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 381 (389)
+-.+....+++++..|..++.+++......+..+-+...-..+++++-.+.+++-+.+..++..+.+
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3334445689999999999999998764444333344455567777777777777777777776654
No 471
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=54.98 E-value=1.1e+02 Score=32.84 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhc
Q 016465 202 EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA 281 (389)
Q Consensus 202 ~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~ 281 (389)
.+++.++++|..+..+-.... ....+..+.+++.....+++.-.+..+.....-..+-....-..+++..++-|.+.
T Consensus 144 pVre~caq~L~~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 567777777776653321110 12344556666665544444444433332211000000111234567777788888
Q ss_pred CcccHHHHHHHHHHHhcChhh--HHHhhccCChHHHHHHHhcCCh--HHHHHHHHHHHHHhhcCHHHHH----HHHhcCc
Q 016465 282 GGGMVDEALAILAILASHQEG--KTAIGQAEPIPVLMEVIRTGSP--RNRENAAAVLWAICTGDAEQLK----IARELDA 353 (389)
Q Consensus 282 ~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~v~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~----~~~~~~~ 353 (389)
+.+++..|+..+.-+...-.. .+.+ ...+..+...+..-+. .........+..++..+ +... .-.+.|+
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~L 297 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGL 297 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhcc
Confidence 899999998888766653311 1111 1133333333333222 01112222333344333 1111 1112478
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhhH
Q 016465 354 EEALKELSESGTDRAKRKAGSILELLQRID 383 (389)
Q Consensus 354 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 383 (389)
++.++.++.+.=..++..+...+..+.+.+
T Consensus 298 vp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888887888888888888876654
No 472
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=54.58 E-value=45 Score=31.62 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhccccccccchhc-ccCChHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 016465 150 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSV 216 (389)
Q Consensus 150 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~ 216 (389)
.+-.+..+.++++++.|..++++++.+.++|.... ....-..+++++..+.+++-+.++.++..+..
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33334455789999999999999999888887665 45556677888888888777778887777654
No 473
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=54.36 E-value=1.8e+02 Score=29.41 Aligned_cols=57 Identities=16% Similarity=0.036 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHH
Q 016465 323 SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELL 379 (389)
Q Consensus 323 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l 379 (389)
.+..|..++.+|+.+....+.....+.+..++..|+..+..+ +..+-..|.-+|-.|
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 456678899999999998888888899999999999988765 666777777776665
No 474
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.88 E-value=80 Score=23.73 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=45.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhhHHHHhc-CCHHHHHHHhcCC--------ChHHHHHHHHHHHhc
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEA-GAIPLLVELLSST--------DPRTQEHAVTALLNL 173 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~-g~v~~L~~lL~~~--------~~~~~~~a~~~L~~l 173 (389)
..+..|.+-|+..++.++..+++.|..++...+ ..+..+.+. ..|..+.+.-... ...+|..|-.++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 567888888998889999999999999986554 444444443 3455554443321 234666665555444
No 475
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=53.55 E-value=3.4 Score=36.50 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCCcCcCCcccCcCCeec----CCc--cCccHHHHHHHHhcCCCCCCCCCcc
Q 016465 10 DDFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQT 55 (389)
Q Consensus 10 ~~~~Cpic~~~~~~pv~~----~c~--h~~c~~ci~~~~~~~~~~cp~c~~~ 55 (389)
..-.||+|+....--++. .-| +-+|..|-.+|--. ...||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 345999999865433321 123 45688888899764 4579999864
No 476
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=53.31 E-value=47 Score=24.62 Aligned_cols=53 Identities=23% Similarity=0.097 Sum_probs=0.0
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhh---------CcHHHHHHHhccC
Q 016465 188 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA---------GAIPALIRLLCDG 240 (389)
Q Consensus 188 ~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~---------~~i~~L~~ll~~~ 240 (389)
+++.|+.-|.++++++...|..+|...+..+.....++.. -+-+.++.++..+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~ 70 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLSTP 70 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcch
No 477
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.81 E-value=13 Score=27.21 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=7.4
Q ss_pred CCCCCCCccCcCC
Q 016465 47 KTCPKTQQTLLHT 59 (389)
Q Consensus 47 ~~cp~c~~~~~~~ 59 (389)
..||.|+..+...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 4577776655433
No 478
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=52.67 E-value=97 Score=26.99 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=18.5
Q ss_pred hhccCChHHHHHHHhcC-ChHHHHHHHHHHHHHhhc
Q 016465 306 IGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTG 340 (389)
Q Consensus 306 i~~~~~v~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 340 (389)
+.+.|+...|+.+.++. ..+.....+.++..+..+
T Consensus 174 l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 174 LFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 33456666666666654 233333555555555544
No 479
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=51.85 E-value=11 Score=26.41 Aligned_cols=38 Identities=24% Similarity=0.570 Sum_probs=28.2
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhcCCCCCCCCCccCcC
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 58 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~~~~~cp~c~~~~~~ 58 (389)
.-.|.+|..-...| |+.||..|-.+ ...|..|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 34788998877654 78899999543 2469999988743
No 480
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.77 E-value=12 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=30.9
Q ss_pred CCcCcCCcccCcCCeecCCccCccHHHHHHHHhc
Q 016465 11 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA 44 (389)
Q Consensus 11 ~~~Cpic~~~~~~pv~~~c~h~~c~~ci~~~~~~ 44 (389)
...|.+.+..|.+||.+.-|..|.-..|-.|+..
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk 73 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK 73 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence 3579999999999999999999999999999974
No 481
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=51.33 E-value=2.1e+02 Score=28.47 Aligned_cols=251 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
.++..+=+++.+++..++.-|+-.++-...+..+.++-.. ..|...+.+++..+|..++--|+-.-.....-+..
T Consensus 415 ~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpal-----ALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~ 489 (878)
T KOG2005|consen 415 KGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPAL-----ALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVL 489 (878)
T ss_pred hhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHH-----HHHHHhccCCCceeehHHhhhhHHhhcCCchHHHH
Q ss_pred cccCChHHHHHHHccCCHH--HHHHHHHHHHHhcCCchhhH--------------------------------HHHhhCc
Q 016465 184 VNAGAIPDIVDVLKNGSME--ARENAAATLFSLSVIDENKV--------------------------------AIGAAGA 229 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~--~~~~a~~~L~~Ls~~~~~~~--------------------------------~~~~~~~ 229 (389)
. .|..++.+.+.. +...|.-.|+.+....-+.. .+.....
T Consensus 490 ~------lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~ 563 (878)
T KOG2005|consen 490 E------LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQES 563 (878)
T ss_pred H------HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccch
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHhhcCcccHH---HHHHHHHHHhcChhhHHHh
Q 016465 230 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVD---EALAILAILASHQEGKTAI 306 (389)
Q Consensus 230 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~---~a~~~L~~l~~~~~~~~~i 306 (389)
+...+..++.-+..++..+-..+...+....+-...++. ..+...........-. .|+--++-++..++.-.++
T Consensus 564 ~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~---q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM 640 (878)
T KOG2005|consen 564 VDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS---QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM 640 (878)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech---hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH
Q ss_pred hccCChHHHHHHHhcCChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Q 016465 307 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 379 (389)
Q Consensus 307 ~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 379 (389)
++..+-.+++.+++.+|...=-++.-|+..+|... +++.|-++.++++.++...|..++..+
T Consensus 641 ----~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~-------vlDtLsk~shd~D~eva~naIfamGLi 702 (878)
T KOG2005|consen 641 ----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVN-------VLDTLSKFSHDGDLEVAMNAIFAMGLI 702 (878)
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcch-------HHHHHHHhccCcchHHHHHHHHHhccc
No 482
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=50.75 E-value=1.1e+02 Score=29.60 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc--c---------CChhhHHHHHHHHHHhccCCCchHHHHhc
Q 016465 200 SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC--D---------GTPRGKKDAATAIFNLSIYQGNKARAVRA 268 (389)
Q Consensus 200 ~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 268 (389)
+.++...|-..|..+...- -+..++..|..+.. . .++.++...+..|.. ... ..-...
T Consensus 250 ~~~V~~~ae~~LKr~~~~~------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~--Aa~~~~ 318 (501)
T PF13001_consen 250 NSSVSDRAEDLLKRLSVSL------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVI--AATSFP 318 (501)
T ss_pred cchHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHH--HHhCCc
Confidence 4455566666666665441 12345666776655 2 134555555544442 100 000112
Q ss_pred CCcHHHHHHHhhc--CcccHHHHHHHH---HHHhcC-hhhHHHh----hccCChHHHHHH-----HhcCChHHHHHHHHH
Q 016465 269 GIVPPLMRFLKDA--GGGMVDEALAIL---AILASH-QEGKTAI----GQAEPIPVLMEV-----IRTGSPRNRENAAAV 333 (389)
Q Consensus 269 ~~i~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~-~~~~~~i----~~~~~v~~L~~l-----l~~~~~~~~~~a~~~ 333 (389)
..+..+..-+.+. +..++..++..+ .....+ +...... +..++.+.+ +. -.+.+...|..+..+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHH
Confidence 2233333334443 456666776666 443322 2222111 223333333 10 012346778999999
Q ss_pred HHHHhhcCHHHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhhHh
Q 016465 334 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 384 (389)
Q Consensus 334 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 384 (389)
|+.|+...+... ..+.+.+..|..-+..++++++....++|..|.....
T Consensus 398 lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 398 LGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 999999876442 1235678888887788889999999999999876543
No 483
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=50.71 E-value=3.8 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=7.0
Q ss_pred CcCcCCcccCcCC
Q 016465 12 FRCPISLELMKDP 24 (389)
Q Consensus 12 ~~Cpic~~~~~~p 24 (389)
|.|+.|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3466666555543
No 484
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.11 E-value=10 Score=19.66 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhccCCCchHHHHhcCCcHHHHHHHh
Q 016465 244 GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK 279 (389)
Q Consensus 244 ~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~ll~ 279 (389)
+|..++++|+++.. ...++.|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46677788777643 345666666654
No 485
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.95 E-value=1.7e+02 Score=25.24 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHhcCCcHHHHHHHhhcCcc--------cHHHHHHHHHHHhcChhhHHHhhccCChHHHHHHHhcCC--hHHHHHHHHHH
Q 016465 265 AVRAGIVPPLMRFLKDAGGG--------MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS--PRNRENAAAVL 334 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~~~~~--------~~~~a~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~--~~~~~~a~~~L 334 (389)
+.+....+.++++++.++.. +.+..-.++..++ .|-+..|.+++.+.+ .-+|..|+.+|
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL 137 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISAL 137 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45667889999999765441 2222223333333 467888889998764 67899999999
Q ss_pred HHHhhcCHHHHHHHH
Q 016465 335 WAICTGDAEQLKIAR 349 (389)
Q Consensus 335 ~~l~~~~~~~~~~~~ 349 (389)
..++...+..+..+.
T Consensus 138 ~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 138 AFLVHEGPISREEVI 152 (249)
T ss_pred HHHHHcCCCCHHHHH
Confidence 999887765555443
No 486
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.88 E-value=63 Score=29.19 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHhcChhhHHHhhccC--ChHHHHHHHhcC---ChHHHHHHHHHHHHHhhcCHHHHHHHH------hcCc
Q 016465 285 MVDEALAILAILASHQEGKTAIGQAE--PIPVLMEVIRTG---SPRNRENAAAVLWAICTGDAEQLKIAR------ELDA 353 (389)
Q Consensus 285 ~~~~a~~~L~~l~~~~~~~~~i~~~~--~v~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~ 353 (389)
++-.|+.++..+.........++..+ .+..|+++++.+ ...++..|+.+|..++.........+. ..|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 34456666666666667777777766 899999999875 368899999999999986543333222 2355
Q ss_pred HHHHHH
Q 016465 354 EEALKE 359 (389)
Q Consensus 354 ~~~L~~ 359 (389)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555554
No 487
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.85 E-value=2e+02 Score=26.03 Aligned_cols=209 Identities=16% Similarity=0.099 Sum_probs=102.3
Q ss_pred HHHHHHHHHhccccccccchhcccCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCC
Q 016465 163 QEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT 241 (389)
Q Consensus 163 ~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~ 241 (389)
|.....+|..+.. .. ....++..+..++.. .++......+.++..=...- ..-....++..+..-+.+..
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk 74 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKK 74 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCC
Confidence 3444555655554 22 334467777888865 45666666665554321100 00012345566777777777
Q ss_pred hhhHHHHHHHHHHhccCCCchHH-HHhcCCcHHHHHHHhh----cCccc----HHHHHHHHHHHhc--ChhhHH------
Q 016465 242 PRGKKDAATAIFNLSIYQGNKAR-AVRAGIVPPLMRFLKD----AGGGM----VDEALAILAILAS--HQEGKT------ 304 (389)
Q Consensus 242 ~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~i~~L~~ll~~----~~~~~----~~~a~~~L~~l~~--~~~~~~------ 304 (389)
..+|..-+..++.......+... -.-..+++.|++.+.. +-+.. ...|..++. +.. .+....
T Consensus 75 ~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~ 153 (339)
T PF12074_consen 75 PPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFW 153 (339)
T ss_pred CcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhh
Confidence 76888777777776652222211 1223467777777754 22221 122222222 111 010000
Q ss_pred H-hhccC-ChHHHHHHHhc-CChHHHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHH
Q 016465 305 A-IGQAE-PIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELL 379 (389)
Q Consensus 305 ~-i~~~~-~v~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l 379 (389)
. ..+.. .+-.=-+++.. .+++.....+.+|..+..+.......-.....-..++.++-+. ...+|+.|...|+.+
T Consensus 154 ~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l 233 (339)
T PF12074_consen 154 SLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKL 233 (339)
T ss_pred hhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 0 01100 00000023333 3455556667777666554321111111223556677777777 789999999999876
Q ss_pred Hh
Q 016465 380 QR 381 (389)
Q Consensus 380 ~~ 381 (389)
..
T Consensus 234 ~~ 235 (339)
T PF12074_consen 234 YA 235 (339)
T ss_pred HH
Confidence 43
No 488
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=49.61 E-value=9.7 Score=33.29 Aligned_cols=25 Identities=8% Similarity=0.437 Sum_probs=16.7
Q ss_pred CCcCcCCcccCc-CCeec--CCccCccH
Q 016465 11 DFRCPISLELMK-DPVIV--STGQTYER 35 (389)
Q Consensus 11 ~~~Cpic~~~~~-~pv~~--~c~h~~c~ 35 (389)
.|.||+|+..|. ++-.+ +.||+|..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999885 22233 45787743
No 489
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=49.60 E-value=56 Score=27.14 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=40.8
Q ss_pred HHhcCCcHHHHHHHhhcC------------------cccHHHHHHHHHHHhc-ChhhHHHhhccCChHHHHHHHhcCChH
Q 016465 265 AVRAGIVPPLMRFLKDAG------------------GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPR 325 (389)
Q Consensus 265 ~~~~~~i~~L~~ll~~~~------------------~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~v~~L~~ll~~~~~~ 325 (389)
+.+.|++..++++|..+- .++...+..+|..++. +..++..+.+. ++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhcc
Confidence 445688888888887622 1345678888888885 45566666542 22223333322111
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHhcCcHHHHHHHHHh
Q 016465 326 NRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 363 (389)
Q Consensus 326 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 363 (389)
.-..+..+|..+..++++....+.+.. +..++.++..
T Consensus 117 ~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp TTHHHHHHHHHHHTT-----------------------
T ss_pred CCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 123466677777777776666665554 6777777765
No 490
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=49.44 E-value=0.99 Score=32.49 Aligned_cols=45 Identities=24% Similarity=0.522 Sum_probs=16.0
Q ss_pred CcCcCCcccC--cCCeec--CCccCccHHHHHHHHh---cCCCCCCCCCccCc
Q 016465 12 FRCPISLELM--KDPVIV--STGQTYERSCIQKWLD---AGHKTCPKTQQTLL 57 (389)
Q Consensus 12 ~~Cpic~~~~--~~pv~~--~c~h~~c~~ci~~~~~---~~~~~cp~c~~~~~ 57 (389)
=.|++|...+ .++... +-||+| .+|--..+. -+.+.|+.|+...-
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 4799999855 566544 358988 566656554 13367999986643
No 491
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=48.37 E-value=18 Score=22.26 Aligned_cols=25 Identities=12% Similarity=0.453 Sum_probs=14.2
Q ss_pred CCccCccHHHHHHHHhcCCCCCCCCC
Q 016465 28 STGQTYERSCIQKWLDAGHKTCPKTQ 53 (389)
Q Consensus 28 ~c~h~~c~~ci~~~~~~~~~~cp~c~ 53 (389)
.|++.||-.| +-+..+.-..||-|.
T Consensus 26 ~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CCCCccccCc-ChhhhccccCCcCCC
Confidence 4888999998 444445556799884
No 492
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=48.08 E-value=81 Score=32.68 Aligned_cols=125 Identities=20% Similarity=0.154 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCC-ChHHHHHHHHHHHhccccccccchhcccCChHHHHHHH
Q 016465 118 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL 196 (389)
Q Consensus 118 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL 196 (389)
+-++..+.-+|.+++.....-.+ ..+|.|++-|+.. ...+|.+.+-+++.++.. ..+.-..++|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHHHHHhhHHHHHHh
Confidence 45778888889888864433221 3568888888654 456666666666665532 1122345899999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHHHhhC--cHHHHHHHhccCChhhHHHHHHHHHHhc
Q 016465 197 KNGSMEARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDGTPRGKKDAATAIFNLS 256 (389)
Q Consensus 197 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~L~ 256 (389)
.++++-++..+.-.|.+|...+-.+. .| ++..++.++ +.+++++..|=-.+..+.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 99999999999999999875432221 12 233344444 445566665555555443
No 493
>PRK00420 hypothetical protein; Validated
Probab=48.02 E-value=6.4 Score=28.89 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=9.8
Q ss_pred cCCCCCCCCCccCc
Q 016465 44 AGHKTCPKTQQTLL 57 (389)
Q Consensus 44 ~~~~~cp~c~~~~~ 57 (389)
.|...||.|+....
T Consensus 38 ~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 38 DGEVVCPVHGKVYI 51 (112)
T ss_pred CCceECCCCCCeee
Confidence 35567999987654
No 494
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=47.83 E-value=96 Score=28.42 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=58.3
Q ss_pred chhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhhHHHHhcCCHHHHHHHhc-CCChHHHHHHHHHHHhccc
Q 016465 102 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSI 175 (389)
Q Consensus 102 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~lL~-~~~~~~~~~a~~~L~~l~~ 175 (389)
..+.+..+.+.|.+.|+.+...|+..+..++.... ..+..+....+...|..++. ..++.+++..-.++.+.+.
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999886543 34556666678888889998 5677887777666666654
No 495
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.69 E-value=66 Score=34.73 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhhHHHHhcCCHHHHHHHhcCCChHHHHHHHHHHHhccccccccchh
Q 016465 104 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 183 (389)
Q Consensus 104 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i 183 (389)
+++|.|-..|.+.+.++|..|+..++.+.......-. =-.......++.-+.+.+.++|..++.....+..+ ..-
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~----~~~ 333 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN----NPS 333 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc----Cch
Q ss_pred cccCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhccCChhhHHHHHHHHHHh
Q 016465 184 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 255 (389)
Q Consensus 184 ~~~g~l~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L 255 (389)
...+....+.--..+.+++++.....++.......-.-..+.. .+..+.+.+.+....+|..|+.-|..+
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~--ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL--LLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH--HHHHHHHHHhhhhHHHHHHHHHHHHHH
No 496
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.64 E-value=1.3e+02 Score=32.58 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=56.5
Q ss_pred cCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhhHHHHhhCcHHHHHHHhc----cC---ChhhHHHHHHHHHHhc
Q 016465 186 AGAIPDIVDVLK--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC----DG---TPRGKKDAATAIFNLS 256 (389)
Q Consensus 186 ~g~l~~L~~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~~~~~~~i~~L~~ll~----~~---~~~~~~~a~~~L~~L~ 256 (389)
.|.+-....+.. .+..+++.....++.++-+....... .| .+.+.++++ .+ ..++...+...|.-++
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIs 914 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLIS 914 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhh
Confidence 344444444443 33456677777788777654432211 12 333333332 22 3344444445555444
Q ss_pred cCCC-chHHHHhcCCcHHHHHHHhh-cCcccHHHHHHHHHHHhcChh
Q 016465 257 IYQG-NKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQE 301 (389)
Q Consensus 257 ~~~~-~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 301 (389)
.+.- ....-.-.+.|+.+...-.. .+.++.-.|++.+|+++..-.
T Consensus 915 sDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~ 961 (1610)
T KOG1848|consen 915 SDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLK 961 (1610)
T ss_pred hcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 3211 00111113445555555443 678888999999999986433
No 497
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=47.64 E-value=2.7e+02 Score=26.94 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=96.2
Q ss_pred cCCChHHHHHHHHHHHhccccccccchhcccCChHHHHHHHc--c---------CCHHHHHHHHHHHHHhcCCchhhHHH
Q 016465 156 SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK--N---------GSMEARENAAATLFSLSVIDENKVAI 224 (389)
Q Consensus 156 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~l~~L~~lL~--~---------~~~~~~~~a~~~L~~Ls~~~~~~~~~ 224 (389)
.+.+.++...|-..|..+..+ +-+...+..|..+.. . .++.++...+..|.. .... .-
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~A--a~ 315 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIA--AT 315 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHH--Hh
Confidence 345677888888888777655 334556777777665 2 245566655555543 1100 00
Q ss_pred HhhCcHHHHHHHhccC--ChhhHHHHHHHH---HHhccCCC-chHH----HHhcCCcHHHHHH-----HhhcCcccHHHH
Q 016465 225 GAAGAIPALIRLLCDG--TPRGKKDAATAI---FNLSIYQG-NKAR----AVRAGIVPPLMRF-----LKDAGGGMVDEA 289 (389)
Q Consensus 225 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L---~~L~~~~~-~~~~----~~~~~~i~~L~~l-----l~~~~~~~~~~a 289 (389)
.-...+..+..-+.+. +.+.+..++..+ .....+-. .... ++..++.+.+ +. -...+...+..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHH
Confidence 1123334444445444 456666676666 44333222 2222 2334444444 10 112345678889
Q ss_pred HHHHHHHhcChhhHHHhhccCChHHHHHHHhcCChHHHHHHHHHHHHHhhc
Q 016465 290 LAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 340 (389)
Q Consensus 290 ~~~L~~l~~~~~~~~~i~~~~~v~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 340 (389)
..+|+.|+...+.-- .-+-+.+..|++-|...+++++...-.+|..++..
T Consensus 395 Ye~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999999996443210 01235678888888777888888877788777653
No 498
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=47.56 E-value=1.8e+02 Score=26.21 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhccCCCchHHHHhcCCcHHHHH-HHhh---cCcccHHH-HHHHHHHHh----c-ChhhHHHhhccCCh
Q 016465 243 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMR-FLKD---AGGGMVDE-ALAILAILA----S-HQEGKTAIGQAEPI 312 (389)
Q Consensus 243 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~i~~L~~-ll~~---~~~~~~~~-a~~~L~~l~----~-~~~~~~~i~~~~~v 312 (389)
.+++..+..+.......++... +....+++|++ +|.+ ..+..++. ++.++..+. . ..+.-..+.+ .++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 4556667777666655554444 55667788777 4433 34444432 334444433 2 1222333333 366
Q ss_pred HHHHHHHhcC---ChHHHHHHHHHHHHHhhcCHHHHHHHHh---cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhh
Q 016465 313 PVLMEVIRTG---SPRNRENAAAVLWAICTGDAEQLKIARE---LDAEEALKELSESGTDRAKRKAGSILELLQRI 382 (389)
Q Consensus 313 ~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 382 (389)
...+.++..+ -|+.+..-...|.++........-.+-. .-++..++--+++.+.++.+.+..+|..+-+.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 7777788653 3788888888887777643221111111 13556666677888999999999888887543
No 499
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=47.49 E-value=12 Score=37.37 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=34.6
Q ss_pred CCCcCcCCcccCc--CCee--cCCccCccHHHHHHHHhc------CCCCCCCCCc
Q 016465 10 DDFRCPISLELMK--DPVI--VSTGQTYERSCIQKWLDA------GHKTCPKTQQ 54 (389)
Q Consensus 10 ~~~~Cpic~~~~~--~pv~--~~c~h~~c~~ci~~~~~~------~~~~cp~c~~ 54 (389)
..+.|-||.+.+. .|+- -.|-|.|.-.||.+|... ....||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3478999999774 5663 358899999999999863 3457999973
No 500
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=47.44 E-value=11 Score=27.39 Aligned_cols=10 Identities=50% Similarity=1.248 Sum_probs=0.0
Q ss_pred CccHHHHHHH
Q 016465 32 TYERSCIQKW 41 (389)
Q Consensus 32 ~~c~~ci~~~ 41 (389)
|.||.|+++|
T Consensus 75 tCCRgCL~KW 84 (111)
T PF13811_consen 75 TCCRGCLEKW 84 (111)
T ss_pred cchHHHHHHH
Done!