BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016468
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
E N+ GT +++ ++ G+ R+V+VST N V+G + + ES P P Y SK
Sbjct: 101 ETNVQGTQTLLQCAVDAGVGRVVHVST-NQVYGSIDSGSWTESSPLEP----NSPYAASK 155
Query: 74 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVS-LAKLGLVPFK 130
+ LV ++ R + + R R YGP + E+ +P V+ L G +P
Sbjct: 156 A-GSDLVARAYHRTYGLDVR------ITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL- 207
Query: 131 IGEPSVKTDWIYVDNLV--LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEF 188
G+ + +W++ D+ +AL+LA GR +G+ Y + G + E
Sbjct: 208 YGDGANVREWVHTDDHCRGIALVLAG-----------GR---AGEIYHIGGGLELTNREL 253
Query: 189 IGPLLKTLDYD 199
G LL +L D
Sbjct: 254 TGILLDSLGAD 264
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
E N+ GT +++ ++ G+ R+V+VST + V+G + + ES P P Y SK
Sbjct: 101 ETNVQGTQTLLQCAVDAGVGRVVHVST-DEVYGSIDSGSWTESSPLEP----NSPYAASK 155
Query: 74 SVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGE--ERHLPRIVS-LAKLGLVPFK 130
+ LV ++ R + + R R YGP + E+ +P V+ L G +P
Sbjct: 156 A-GSDLVARAYHRTYGLDVR------ITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL- 207
Query: 131 IGEPSVKTDWIYVDNLV--LALILASMGLLDDIPGQKGRPIASGQPYFVSDGFPINTFEF 188
G+ + +W++ D+ +AL+LA GR +G+ Y + G + E
Sbjct: 208 YGDGANVREWVHTDDHCRGIALVLAG-----------GR---AGEIYHIGGGLELTNREL 253
Query: 189 IGPLLKTLDYD 199
G LL +L D
Sbjct: 254 TGILLDSLGAD 264
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 16 NINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 75
N+ T +V+E + G++ +V+ S+ + V+G +++ E PY PI YG +K+
Sbjct: 85 NVVATFNVLEWARQTGVRTVVFASS-STVYGDADVIPTPEEEPYKPI----SVYGAAKAA 139
Query: 76 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIG 132
E ++ + R F +CL AVR A + GP RH I+ L + V +G
Sbjct: 140 GE-VMCATYARLF---GVRCL---AVRYANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLG 191
Query: 133 EPSVKTDWIYVDNLVLALILA 153
+ + + ++YV + V A + A
Sbjct: 192 DGTQRKSYLYVRDAVEATLAA 212
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 16 NINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 75
N+ T +V+E + G++ +V+ S+ + V+G +++ E PY PI YG +K+
Sbjct: 89 NVVATFNVLEWARQTGVRTVVFASS-STVYGDADVIPTPEEEPYKPI----SVYGAAKAA 143
Query: 76 AEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYGPGEERH---LPRIVSLAKLGLVPFKIG 132
E ++ + R F +CL AVR A + GP RH I+ L + V +G
Sbjct: 144 GE-VMCATYARLF---GVRCL---AVRYANVVGP-RLRHGVIYDFIMKLRRNPNVLEVLG 195
Query: 133 EPSVKTDWIYVDNLVLALILA 153
+ + + ++YV + V A + A
Sbjct: 196 DGTQRKSYLYVRDAVEATLAA 216
>pdb|3TAC|B Chain B, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 334
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 281 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 326
++ +RK L DGPT+ AWL +G+PA + + A + + I R IG+
Sbjct: 27 EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86
Query: 327 FIFKSMWMMRLAFAIAVSAHVS 348
S + RL +A+ VS
Sbjct: 87 ----SNPLHRLKLRLAIQEMVS 104
>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 297
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 281 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 326
++ +RK L DGPT+ AWL +G+PA + + A + + I R IG+
Sbjct: 27 EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86
Query: 327 FIFKSMWMMRLAFAIAVSAHVS 348
S + RL +A+ VS
Sbjct: 87 ----SNPLHRLKLRLAIQEMVS 104
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 25 EACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSVAEQLVLKSN 84
EAC ++G+++LV+ ST ++G E+ G + +P Y SK+ E L
Sbjct: 102 EACRQYGVEKLVFASTGGAIYG--EVPEGERAEETWPPRPK-SPYAASKAAFEHY-LSVY 157
Query: 85 GRPFKKNNRKCLYTCAVRPAAIYGPGEERH---------LPRIVSLAKLGLVPFKI-GEP 134
G+ + L ++R +YGP ++ H R++ + L K G+
Sbjct: 158 GQSY------GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDE 211
Query: 135 SVKTDWIYVDNLVLALILA 153
D++YV ++ A LA
Sbjct: 212 GCVRDYVYVGDVAEAHALA 230
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 16 NINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSKSV 75
N+ T ++EA + G+ R+V+ ST + V+G +++ E P PI YG SK
Sbjct: 90 NVLATYRLLEAMRKAGVSRIVFTST-STVYGEAKVIPTPEDYPTHPI----SLYGASKLA 144
Query: 76 AEQLV 80
E L+
Sbjct: 145 CEALI 149
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYG 70
+ N+NGT +I A ++ ++ ST V+G N +PY FP YG
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIFSSTA-TVYGD------NPKIPYVESFPTGTPQSPYG 150
Query: 71 RSKSVAEQLV 80
+SK + EQ++
Sbjct: 151 KSKLMVEQIL 160
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPI-------DEHV 66
E+N+ GT +++EA ++ + S+ N V+G E NE+ + DE
Sbjct: 98 EINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 157
Query: 67 D-----SYGRSKSVAEQLVLKSNGRPFKKNNRKCLYTCAVRPAAIYG 108
YG SK A+Q +L R F N T R +++YG
Sbjct: 158 QLDFHSPYGCSKGAADQYMLDY-ARIFGLN------TVVFRHSSMYG 197
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYG 70
+ N+NGT +I A ++ ++ S+ V+G N +PY FP YG
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIFSSSA-TVYGD------NPKIPYVESFPTGTPQSPYG 150
Query: 71 RSKSVAEQLV 80
+SK + EQ++
Sbjct: 151 KSKLMVEQIL 160
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 224 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDE 260
L P++N +W + +LP E + VTHY L + E
Sbjct: 179 LGPFMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKE 215
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYG 70
+ N+NGT +I A ++ ++ S+ V+G N +PY FP YG
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIFSSSA-TVYGD------NPKIPYVESFPTGTPQSPYG 150
Query: 71 RSKSVAEQLV 80
+SK + EQ++
Sbjct: 151 KSKLMVEQIL 160
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYG 70
+ N+NGT +I A ++ ++ S+ V+G N +PY FP YG
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIF-SSVATVYGD------NPKIPYVESFPTGTPQSPYG 150
Query: 71 RSKSVAEQLV 80
+SK + EQ++
Sbjct: 151 KSKLMVEQIL 160
>pdb|3KGY|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
pdb|3KGY|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
Length = 231
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIV--NGNESLPYFPID 63
++ I+G +VI+ L G+ + ++ V+FGG + N +E LP F ID
Sbjct: 164 DIRISGGANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRID 215
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPY---FPIDEHVDSYG 70
+ N+NGT +I A ++ ++ S+ V+G N +PY FP YG
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIF-SSAATVYGD------NPKIPYVESFPTGTPQSPYG 150
Query: 71 RSKSVAEQLV 80
+SK + EQ++
Sbjct: 151 KSKLMVEQIL 160
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
+VN+NGT +++EA + ++++V ST VFG + N +P I YG +K
Sbjct: 86 KVNMNGTYNILEAAKQHRVEKVVIPSTIG-VFGPETPKN---KVPSITITRPRTMYGVTK 141
Query: 74 SVAEQL 79
AE L
Sbjct: 142 IAAELL 147
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 15 VNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDS 68
VN+ GT ++E G++ LV+ S+ V+G + Y P+DE +
Sbjct: 107 VNLTGTIQLLEIMKAHGVKNLVFSSSA-TVYGNPQ---------YLPLDEAHPTGGCTNP 156
Query: 69 YGRSKSVAEQLV 80
YG+SK E+++
Sbjct: 157 YGKSKFFIEEMI 168
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 15 VNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDS 68
VN+ GT ++E G++ LV+ S+ V+G + Y P+DE +
Sbjct: 107 VNLTGTIQLLEIMKAHGVKNLVFSSSA-TVYGNPQ---------YLPLDEAHPTGGCTNP 156
Query: 69 YGRSKSVAEQLV 80
YG+SK E+++
Sbjct: 157 YGKSKFFIEEMI 168
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 15 VNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEH------VDS 68
VN+ GT ++E G++ LV+ S+ V+G + Y P+DE +
Sbjct: 107 VNLTGTIQLLEIMKAHGVKNLVFSSSA-TVYGNPQ---------YLPLDEAHPTGGCTNP 156
Query: 69 YGRSKSVAEQLV 80
YG+SK E+++
Sbjct: 157 YGKSKFFIEEMI 168
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 123 KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIAS---GQPY---F 176
+LG++ G P+ + W+ ++ V LA GLLD + + GRP + G+P+
Sbjct: 93 RLGML-LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVV--RTGRPAYAGRYGRPFWEDL 149
Query: 177 VSDGFPINTFEFIGPLLKTLDYDLPK---SWLAVPHALFLG 214
+D ++F+ + + L Y+ P W AV H L +G
Sbjct: 150 SADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVG 190
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
+ N+NGT +I A ++ ++ S+ V+G + + ES FP YG+SK
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIFSSSA-TVYGDQPKIPYVES---FPTGTPQSPYGKSK 153
Query: 74 SVAEQLV 80
+ EQ++
Sbjct: 154 LMVEQIL 160
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
+ N+NGT +I A ++ ++ S+ V+G + + ES FP YG+SK
Sbjct: 98 DNNVNGTLRLISAMRAANVKNFIF-SSAATVYGDQPKIPYVES---FPTGTPQSPYGKSK 153
Query: 74 SVAEQLV 80
+ EQ++
Sbjct: 154 LMVEQIL 160
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 15 VNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGK-EIVNGNESLPYFPIDEHVDSYGRSK 73
VN+ GT +++A G++R V+ S+ V + E + E P P YG +K
Sbjct: 101 VNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCP----NSPYGLTK 156
Query: 74 SVAEQLV 80
+ E+LV
Sbjct: 157 LLGEELV 163
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 14 EVNINGTCHVIEACLEFGIQRLVYVSTYNVVFGGKEIVNGNESLPYFPIDEHVDSYGRSK 73
+VN+NGT +++EA + ++++V ST VFG + N +P I +G +K
Sbjct: 86 KVNMNGTYNILEAAKQHRVEKVVIPSTIG-VFGPETPKN---KVPSITITRPRTMFGVTK 141
Query: 74 SVAEQL 79
AE L
Sbjct: 142 IAAELL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,256,937
Number of Sequences: 62578
Number of extensions: 534361
Number of successful extensions: 1284
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 30
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)