Your job contains 1 sequence.
>016469
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV
EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK
NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH
LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT
EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
KFIDTSSKFGHGRFQTTQEKAKYYGRLKA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016469
(389 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200873 - symbol:RPL3B "R-protein L3 B" specie... 1765 6.8e-182 1
TAIR|locus:2018605 - symbol:RP1 "ribosomal protein 1" spe... 1719 5.1e-177 1
UNIPROTKB|F1NEM8 - symbol:RPL3 "Uncharacterized protein" ... 1333 4.1e-136 1
UNIPROTKB|F1NLW1 - symbol:RPL3 "Uncharacterized protein" ... 1333 4.1e-136 1
UNIPROTKB|P39023 - symbol:RPL3 "60S ribosomal protein L3"... 1331 6.7e-136 1
RGD|735105 - symbol:Rpl3 "ribosomal protein L3" species:1... 1328 1.4e-135 1
UNIPROTKB|J9P6X5 - symbol:RPL3 "Uncharacterized protein" ... 1324 3.7e-135 1
UNIPROTKB|F1SNY2 - symbol:RPL3 "60S ribosomal protein L3"... 1323 4.7e-135 1
UNIPROTKB|F1PLN2 - symbol:RPL3 "Uncharacterized protein" ... 1322 6.0e-135 1
MGI|MGI:1351605 - symbol:Rpl3 "ribosomal protein L3" spec... 1320 9.8e-135 1
UNIPROTKB|P39872 - symbol:RPL3 "60S ribosomal protein L3"... 1317 2.0e-134 1
UNIPROTKB|Q4R5Q0 - symbol:RPL3 "60S ribosomal protein L3"... 1310 1.1e-133 1
ASPGD|ASPL0000001032 - symbol:rpl3 species:162425 "Emeric... 1307 2.3e-133 1
POMBASE|SPAPB8E5.06c - symbol:rpl302 "60S ribosomal prote... 1301 1.0e-132 1
POMBASE|SPAC17A5.03 - symbol:rpl301 "60S ribosomal protei... 1300 1.3e-132 1
FB|FBgn0020910 - symbol:RpL3 "Ribosomal protein L3" speci... 1299 1.6e-132 1
WB|WBGene00004414 - symbol:rpl-3 species:6239 "Caenorhabd... 1299 1.6e-132 1
DICTYBASE|DDB_G0291862 - symbol:rpl3 "60S ribosomal prote... 1288 2.4e-131 1
CGD|CAL0006304 - symbol:RPL3 species:5476 "Candida albica... 1287 3.1e-131 1
UNIPROTKB|Q59LS1 - symbol:RPL3 "Likely cytosolic ribosoma... 1287 3.1e-131 1
ZFIN|ZDB-GENE-030131-1291 - symbol:rpl3 "ribosomal protei... 1277 3.5e-130 1
SGD|S000005589 - symbol:RPL3 "Ribosomal 60S subunit prote... 1246 6.8e-127 1
UNIPROTKB|Q3SZ10 - symbol:RPL3L "60S ribosomal protein L3... 1241 2.3e-126 1
GENEDB_PFALCIPARUM|PF10_0272 - symbol:PF10_0272 "ribosoma... 1238 4.8e-126 1
UNIPROTKB|Q8IJC6 - symbol:PF10_0272 "60S ribosomal protei... 1238 4.8e-126 1
UNIPROTKB|F1P5V2 - symbol:RPL3L "Uncharacterized protein"... 1233 1.6e-125 1
UNIPROTKB|Q92901 - symbol:RPL3L "60S ribosomal protein L3... 1232 2.1e-125 1
UNIPROTKB|G5E9G0 - symbol:RPL3 "60S ribosomal protein L3"... 1081 2.1e-109 1
UNIPROTKB|H7C422 - symbol:RPL3 "60S ribosomal protein L3"... 996 2.1e-100 1
UNIPROTKB|B5MCW2 - symbol:RPL3 "60S ribosomal protein L3"... 851 4.9e-85 1
UNIPROTKB|H9L0E4 - symbol:H9L0E4 "Uncharacterized protein... 780 1.6e-77 1
UNIPROTKB|H7C3M2 - symbol:RPL3 "60S ribosomal protein L3"... 766 5.0e-76 1
RGD|1306315 - symbol:Rpl3l "ribosomal protein L3-like" sp... 731 2.5e-72 1
UNIPROTKB|F1N578 - symbol:F1N578 "Uncharacterized protein... 427 6.1e-66 2
RGD|1308952 - symbol:Rab11fip3 "RAB11 family interacting ... 488 8.8e-46 1
RGD|1591334 - symbol:Nme4 "NME/NM23 nucleoside diphosphat... 488 8.8e-46 1
UNIPROTKB|D4A136 - symbol:D4A136 "Uncharacterized protein... 473 5.6e-45 1
UNIPROTKB|F8WCR1 - symbol:RPL3 "60S ribosomal protein L3"... 471 9.1e-45 1
UNIPROTKB|Q29293 - symbol:RPL3 "60S ribosomal protein L3"... 430 2.0e-40 1
UNIPROTKB|H3BQN3 - symbol:RPL3L "60S ribosomal protein L3... 111 8.2e-06 1
UNIPROTKB|P42920 - symbol:rplC "50S ribosomal protein L3"... 103 0.00041 2
TIGR_CMR|BA_0110 - symbol:BA_0110 "ribosomal protein L3" ... 108 0.00065 2
>TAIR|locus:2200873 [details] [associations]
symbol:RPL3B "R-protein L3 B" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA;TAS] [GO:0009165 "nucleotide
biosynthetic process" evidence=RCA] [GO:0052541 "plant-type cell
wall cellulose metabolic process" evidence=RCA] [GO:0052546 "cell
wall pectin metabolic process" evidence=RCA] InterPro:IPR000597
Pfam:PF00297 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020
GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
EMBL:AC005850 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 ProtClustDB:CLSN2679512 EMBL:M32655
EMBL:BT003869 EMBL:BT005702 IPI:IPI00524843 PIR:B96641 PIR:JQ0772
RefSeq:NP_176352.1 UniGene:At.36412 ProteinModelPortal:P22738
SMR:P22738 STRING:P22738 PaxDb:P22738 PRIDE:P22738
EnsemblPlants:AT1G61580.1 GeneID:842454 KEGG:ath:AT1G61580
GeneFarm:277 TAIR:At1g61580 HOGENOM:HOG000107319 InParanoid:P22738
OMA:QETHSAM PhylomeDB:P22738 Genevestigator:P22738
GermOnline:AT1G61580 Uniprot:P22738
Length = 390
Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
Identities = 324/390 (83%), Positives = 354/390 (90%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPP+ KTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGG +A+KVD+A FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK QE+HSAMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKL
Sbjct: 301 EYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGR-LKA 389
KFID +S GHGRFQT+QEKAK+YGR +KA
Sbjct: 361 KFIDAASNGGHGRFQTSQEKAKFYGRTIKA 390
>TAIR|locus:2018605 [details] [associations]
symbol:RP1 "ribosomal protein 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005773 "vacuole" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR000597
Pfam:PF00297 EMBL:CP002684 GO:GO:0005886 GO:GO:0009506
GO:GO:0005774 GO:GO:0005618 GO:GO:0005730 GO:GO:0006412
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AC005687
GO:GO:0022625 UniGene:At.21634 UniGene:At.48973 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 EMBL:M32654 EMBL:AY057487
EMBL:AF327421 EMBL:AF361101 EMBL:AF361809 EMBL:AY039544
EMBL:AY052743 EMBL:Z25950 IPI:IPI00540778 PIR:E96498 PIR:JQ0771
RefSeq:NP_001031146.1 RefSeq:NP_001185148.1 RefSeq:NP_001185149.1
RefSeq:NP_001185150.1 RefSeq:NP_001185151.1 RefSeq:NP_001185152.1
RefSeq:NP_175009.1 RefSeq:NP_973966.1 UniGene:At.24630
UniGene:At.7195 ProteinModelPortal:P17094 SMR:P17094 STRING:P17094
PaxDb:P17094 PRIDE:P17094 EnsemblPlants:AT1G43170.1
EnsemblPlants:AT1G43170.2 EnsemblPlants:AT1G43170.3
EnsemblPlants:AT1G43170.5 EnsemblPlants:AT1G43170.6
EnsemblPlants:AT1G43170.7 EnsemblPlants:AT1G43170.8
EnsemblPlants:AT1G43170.9 GeneID:840916 KEGG:ath:AT1G43170
GeneFarm:274 TAIR:At1g43170 InParanoid:P17094 KO:K02925 OMA:GFHQRTE
PhylomeDB:P17094 ProtClustDB:CLSN2679512 Genevestigator:P17094
GermOnline:AT1G43170 Uniprot:P17094
Length = 389
Score = 1719 (610.2 bits), Expect = 5.1e-177, P = 5.1e-177
Identities = 317/387 (81%), Positives = 347/387 (89%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETP + KTPRGLRSL TVWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW +++DGKK IQAQLEKMKKY TVIRVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK E+H+AMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKL
Sbjct: 301 EYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRL 387
KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct: 361 KFIDTASIFGHGRFQTSLEKMRFYNRV 387
>UNIPROTKB|F1NEM8 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AADN02006114 IPI:IPI00820650
Ensembl:ENSGALT00000019879 ArrayExpress:F1NEM8 Uniprot:F1NEM8
Length = 403
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 248/393 (63%), Positives = 309/393 (78%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLRS T++A+H+++E +RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 121
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + ++GKK ++ MKKYC VIRV+AHTQ+R + L+QKK+HL
Sbjct: 122 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQMRLLP-LRQKKSHL 180
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 241
MEIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 242 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------ 295
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+ Q
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQIKDGKLIK 300
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R AL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
E+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTAEEKKSFMGPLK 393
>UNIPROTKB|F1NLW1 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AADN02006114 IPI:IPI00592041
UniGene:Gga.990 PRIDE:F1NLW1 Ensembl:ENSGALT00000030605
NextBio:20821234 ArrayExpress:F1NLW1 Uniprot:F1NLW1
Length = 402
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 248/393 (63%), Positives = 309/393 (78%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 1 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 60
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLRS T++A+H+++E +RRFYKN
Sbjct: 61 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKN 120
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + ++GKK ++ MKKYC VIRV+AHTQ+R + L+QKK+HL
Sbjct: 121 WHKSKKKAFTKYCKKWQDEEGKKQLEKDFNSMKKYCQVIRVMAHTQMRLLP-LRQKKSHL 179
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 241
MEIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 180 MEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 239
Query: 242 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------ 295
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+ Q
Sbjct: 240 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQIKDGKLIK 299
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R AL
Sbjct: 300 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 359
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
E+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 EKIDLKFIDTTSKFGHGRFQTAEEKKSFMGPLK 392
>UNIPROTKB|P39023 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR000597
Pfam:PF00297 Reactome:REACT_116125 GO:GO:0005730 GO:GO:0000184
GO:GO:0006413 GO:GO:0003723 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 HOVERGEN:HBG001864 CTD:6122 ChiTaRS:RPL3
EMBL:X73460 EMBL:AB062291 EMBL:CR456566 EMBL:AK315693 EMBL:AL022326
EMBL:BC002408 EMBL:BC006483 EMBL:BC008003 EMBL:BC012146
EMBL:BC012786 EMBL:BC013674 EMBL:BC014017 EMBL:BC015032
EMBL:BC015767 EMBL:BC063662 EMBL:BC088373 EMBL:BC107711 EMBL:M90054
EMBL:L22453 EMBL:AB007166 IPI:IPI00550021 PIR:S34195
RefSeq:NP_000958.1 UniGene:Hs.119598 ProteinModelPortal:P39023
SMR:P39023 IntAct:P39023 MINT:MINT-1145548 STRING:P39023
PhosphoSite:P39023 DMDM:730565 SWISS-2DPAGE:P39023 PaxDb:P39023
PRIDE:P39023 DNASU:6122 Ensembl:ENST00000216146 GeneID:6122
KEGG:hsa:6122 UCSC:uc003axh.3 GeneCards:GC22M039723
H-InvDB:HIX0172339 HGNC:HGNC:10332 HPA:HPA003365 MIM:604163
neXtProt:NX_P39023 PharmGKB:PA34713 InParanoid:P39023
PhylomeDB:P39023 GenomeRNAi:6122 NextBio:23777 ArrayExpress:P39023
Bgee:P39023 CleanEx:HS_RPL3 Genevestigator:P39023
GermOnline:ENSG00000100316 Uniprot:P39023
Length = 403
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 249/394 (63%), Positives = 309/394 (78%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>RGD|735105 [details] [associations]
symbol:Rpl3 "ribosomal protein L3" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0071353 "cellular
response to interleukin-4" evidence=ISO] InterPro:IPR000597
Pfam:PF00297 RGD:735105 GO:GO:0005730 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
GeneTree:ENSGT00390000017606 HOVERGEN:HBG001864 OrthoDB:EOG43XV3G
CTD:6122 EMBL:X62166 EMBL:BC058494 IPI:IPI00395285 PIR:JQ1536
RefSeq:NP_942048.1 UniGene:Rn.107726 ProteinModelPortal:P21531
SMR:P21531 STRING:P21531 PRIDE:P21531 Ensembl:ENSRNOT00000022949
Ensembl:ENSRNOT00000067032 GeneID:300079 KEGG:rno:300079
UCSC:RGD:735105 InParanoid:P21531 NextBio:646297
Genevestigator:P21531 GermOnline:ENSRNOG00000016896 Uniprot:P21531
Length = 403
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 248/394 (62%), Positives = 308/394 (78%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + D GKK ++ MKKYC VIR++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>UNIPROTKB|J9P6X5 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474
GeneTree:ENSGT00390000017606 EMBL:AAEX03008562
Ensembl:ENSCAFT00000005720 OMA:TIFSEHI Uniprot:J9P6X5
Length = 403
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 247/394 (62%), Positives = 308/394 (78%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + DDGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F++ARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>UNIPROTKB|F1SNY2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926 PROSITE:PS00474
KO:K02925 OMA:GFHQRTE GeneTree:ENSGT00390000017606 CTD:6122
EMBL:CU686742 RefSeq:NP_001230992.1 UniGene:Ssc.53708
Ensembl:ENSSSCT00000000095 GeneID:396768 KEGG:ssc:396768
ArrayExpress:F1SNY2 Uniprot:F1SNY2
Length = 403
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 247/394 (62%), Positives = 308/394 (78%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>UNIPROTKB|F1PLN2 [details] [associations]
symbol:RPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
GeneTree:ENSGT00390000017606 EMBL:AAEX03007312
ProteinModelPortal:F1PLN2 Ensembl:ENSCAFT00000002096 Uniprot:F1PLN2
Length = 403
Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
Identities = 247/393 (62%), Positives = 307/393 (78%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V+
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYKN
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 121
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + DDGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAHL
Sbjct: 122 WHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLP-LRQKKAHL 180
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 241
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 242 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQES 295
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R AL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
E+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>MGI|MGI:1351605 [details] [associations]
symbol:Rpl3 "ribosomal protein L3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0071353 "cellular response to interleukin-4"
evidence=IDA] InterPro:IPR000597 Pfam:PF00297 MGI:MGI:1351605
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 EMBL:CH466550
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0071353 GO:GO:0022625
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G CTD:6122 EMBL:Y00225
EMBL:U89417 EMBL:AK088993 EMBL:AK144518 EMBL:AK144816 EMBL:AK146502
EMBL:AK149494 EMBL:AK151596 EMBL:AK166433 EMBL:AK166825
EMBL:AK167787 EMBL:AK167947 EMBL:AK168040 EMBL:AK168059
EMBL:AK168126 EMBL:AK168128 EMBL:AK168224 EMBL:AK168744
EMBL:AK169060 EMBL:AK169235 EMBL:AK169321 EMBL:AK170819
EMBL:BC009655 EMBL:BC083134 EMBL:BC094059 EMBL:BC158039
IPI:IPI00321170 RefSeq:NP_038790.2 UniGene:Mm.290771
UniGene:Mm.396243 UniGene:Mm.474802 ProteinModelPortal:P27659
SMR:P27659 IntAct:P27659 STRING:P27659 PhosphoSite:P27659
PaxDb:P27659 PRIDE:P27659 Ensembl:ENSMUST00000081650 GeneID:27367
KEGG:mmu:27367 InParanoid:Q91VJ6 NextBio:305258 Bgee:P27659
CleanEx:MM_RPL3 Genevestigator:P27659 GermOnline:ENSMUSG00000057111
GermOnline:ENSMUSG00000060036 Uniprot:P27659
Length = 403
Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
Identities = 247/394 (62%), Positives = 307/394 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + D GKK ++ MKKYC VIR++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>UNIPROTKB|P39872 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G EMBL:Z29555 EMBL:AJ238851
EMBL:BT021012 EMBL:BC102253 IPI:IPI00687634 PIR:S50221
RefSeq:NP_777140.1 UniGene:Bt.3467 ProteinModelPortal:P39872
SMR:P39872 STRING:P39872 PRIDE:P39872 Ensembl:ENSBTAT00000004188
GeneID:282688 KEGG:bta:282688 CTD:6122 InParanoid:P39872
NextBio:20806356 ArrayExpress:P39872 Uniprot:P39872
Length = 403
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 246/394 (62%), Positives = 306/394 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LME+QVNGG+VA+K+D+A E+Q+P+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>UNIPROTKB|Q4R5Q0 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9541 "Macaca
fascicularis" [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOVERGEN:HBG001864 EMBL:AB169493
ProteinModelPortal:Q4R5Q0 SMR:Q4R5Q0 PRIDE:Q4R5Q0 Uniprot:Q4R5Q0
Length = 403
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 247/394 (62%), Positives = 307/394 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE AVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQE 294
LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>ASPGD|ASPL0000001032 [details] [associations]
symbol:rpl3 species:162425 "Emericella nidulans"
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
EMBL:BN001301 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 OMA:GFHQRTE
ProteinModelPortal:C8V202 SMR:C8V202 EnsemblFungi:CADANIAT00006804
Uniprot:C8V202
Length = 392
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 244/388 (62%), Positives = 299/388 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL +LPRKRA+RHRG+VK+FPKDDP KP LTA +GYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGRVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K+HKKE EA T+IETPPL +TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKMHKKEIVEAATVIETPPLIAVGVVGYIETPRGLRSLATVWAEHLSDEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW ++G I LE++KKYCTV+RVLAHTQIRK LKQKKAH
Sbjct: 121 NWYKSKKKAFTKYAKKHSEENGAS-ITRDLERIKKYCTVVRVLAHTQIRKTP-LKQKKAH 178
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA+KVDFA FEK I ID +F+KDEMID+I VTKG G++GV +RWG +
Sbjct: 179 LMEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK 238
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N K++++GK S E++ A T
Sbjct: 239 LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEAN-AST 297
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD ++K ITP+GGF YG V D++L+KG G KKRV+TLR++L QTSR A E++ L
Sbjct: 298 DFDVSKKQITPLGGFVRYGEVKNDFILLKGSVPGVKKRVMTLRKTLYPQTSRRATEKVDL 357
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDTSSKFGHG FQT +EK + G LK
Sbjct: 358 KWIDTSSKFGHGAFQTPEEKRAFMGTLK 385
>POMBASE|SPAPB8E5.06c [details] [associations]
symbol:rpl302 "60S ribosomal protein L3" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR000597 Pfam:PF00297
PomBase:SPAPB8E5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 InterPro:IPR009000 SUPFAM:SSF50447
GO:GO:0022625 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
OMA:GFHQRTE HOGENOM:HOG000107319 OrthoDB:EOG4CG3HR EMBL:X57734
PIR:S25592 RefSeq:NP_594780.1 ProteinModelPortal:P36584 SMR:P36584
STRING:P36584 EnsemblFungi:SPAPB8E5.06c.1 GeneID:2543309
KEGG:spo:SPAPB8E5.06c NextBio:20804326 Uniprot:P36584
Length = 388
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 250/388 (64%), Positives = 297/388 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVTIIETPP+ +TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + + + I +LE++KKYC+V+RVLAHTQIRK L QKKAH
Sbjct: 121 NW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD TEK ITPMGGF YGVV D++++ G GP KRV+TLR+SLL TSR ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFGHGRFQT E ++ G LK
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLK 384
>POMBASE|SPAC17A5.03 [details] [associations]
symbol:rpl301 "60S ribosomal protein L3" species:4896
"Schizosaccharomyces pombe" [GO:0000027 "ribosomal large subunit
assembly" evidence=ISO] [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
"translation" evidence=ISO] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISO] InterPro:IPR000597 Pfam:PF00297
PomBase:SPAC17A5.03 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 GO:GO:0000027 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319 OMA:QETHSAM
EMBL:U00798 PIR:T37818 RefSeq:NP_593471.1 ProteinModelPortal:P40372
SMR:P40372 IntAct:P40372 STRING:P40372 PRIDE:P40372
EnsemblFungi:SPAC17A5.03.1 GeneID:2542265 KEGG:spo:SPAC17A5.03
OrthoDB:EOG4CG3HR NextBio:20803329 Uniprot:P40372
Length = 388
Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
Identities = 249/388 (64%), Positives = 297/388 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVT+IETPP+ +TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + + + I +LE++KKYC+V+RVLAHTQIRK L QKKAH
Sbjct: 121 NW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD TEK ITPMGGF YGVV D++++ G GP KRV+TLR+SLL TSR ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFGHGRFQT E ++ G LK
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLK 384
>FB|FBgn0020910 [details] [associations]
symbol:RpL3 "Ribosomal protein L3" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS;NAS] [GO:0006412 "translation" evidence=ISS;NAS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS]
[GO:0022626 "cytosolic ribosome" evidence=NAS] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR000597 Pfam:PF00297 EMBL:AE014297 GO:GO:0051298
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925
GeneTree:ENSGT00390000017606 CTD:6122 EMBL:AF016835 EMBL:BT011339
RefSeq:NP_524316.1 RefSeq:NP_731547.1 RefSeq:NP_731550.2
UniGene:Dm.6703 ProteinModelPortal:O16797 SMR:O16797 DIP:DIP-17151N
IntAct:O16797 MINT:MINT-277369 STRING:O16797 PaxDb:O16797
PRIDE:O16797 EnsemblMetazoa:FBtr0082346 GeneID:41347
KEGG:dme:Dmel_CG4863 FlyBase:FBgn0020910 InParanoid:O16797
OMA:THILRDV OrthoDB:EOG4NCJV4 PhylomeDB:O16797 ChiTaRS:RPL3
GenomeRNAi:41347 NextBio:823392 Bgee:O16797 GermOnline:CG4863
Uniprot:O16797
Length = 416
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 243/394 (61%), Positives = 295/394 (74%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+ F P+KR++RHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP+ +TP GLR+L VWAQHL+EE RRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW D GKK I+ KM +YC VIRV+AH+QIR +K +QKKAH
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQ-RQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGGS+ KV +A EK I + VF +DEMID +GVTKGKG++GV +RW +
Sbjct: 180 VMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----- 295
LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVI 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R A
Sbjct: 300 KNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+IKLKFIDTSSK GHGRFQT +K + G LK
Sbjct: 360 LEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393
>WB|WBGene00004414 [details] [associations]
symbol:rpl-3 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0032502 "developmental process" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR000597
Pfam:PF00297 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006412 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 GeneTree:ENSGT00390000017606 EMBL:Z69337
EMBL:Z69336 EMBL:Z49936 EMBL:Z66495 PIR:T19771
RefSeq:NP_001021254.1 UniGene:Cel.17929 ProteinModelPortal:P50880
SMR:P50880 DIP:DIP-24912N IntAct:P50880 MINT:MINT-1054211
STRING:P50880 PaxDb:P50880 PRIDE:P50880 EnsemblMetazoa:F13B10.2a.1
EnsemblMetazoa:F13B10.2a.2 EnsemblMetazoa:F13B10.2a.3 GeneID:175501
KEGG:cel:CELE_F13B10.2 UCSC:F13B10.2d.2 CTD:175501
WormBase:F13B10.2a InParanoid:P50880 NextBio:888420
ArrayExpress:P50880 Uniprot:P50880
Length = 401
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 237/391 (60%), Positives = 305/391 (78%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI+ETPP+ TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + +DGKK I+A K+KKYC+ IRV+AHTQ++ ++ +QKKAH
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRR-RQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L+EIQVNGG++ QKVD+A EKQ+ +D VF +DEMID IGVT+G G++GV +RW +
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS--QES-HS 297
LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++ +E ++
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNN 299
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
TEFD T+K ITPMGGFP YG+VN+DY++++G +GPKKR++TLR+SL+ QT R+A E+
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 358 IKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
I LK+IDTSSK GHGRFQTT EK + G+LK
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>DICTYBASE|DDB_G0291862 [details] [associations]
symbol:rpl3 "60S ribosomal protein L3" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000597 Pfam:PF00297
dictyBase:DDB_G0291862 GO:GO:0005615 GenomeReviews:CM000155_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000186
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
EMBL:L08391 PIR:JC4254 RefSeq:XP_629921.1 ProteinModelPortal:P34113
SMR:P34113 STRING:P34113 PRIDE:P34113 EnsemblProtists:DDB0191094
GeneID:8628422 KEGG:ddi:DDB_G0291862 ProtClustDB:PTZ00103
Uniprot:P34113
Length = 398
Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
Identities = 239/394 (60%), Positives = 300/394 (76%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHG+LGF PRKRA+RH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+
Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSK+HKKE EAVTIIE PP+ +T +GL++ TVWAQHL++ RRR YK
Sbjct: 61 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120
Query: 121 NWCXXXXXXXXXXXXXX-ETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKA 179
NW ET++GKK I+A L+ +KK C+V+RV+AHTQ+ K+K L QKKA
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKA 179
Query: 180 HLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
H++EIQVNGGS+ +KV+FA FEK + + VF ++E+ID+IGVTKGKG+ GV+ RWGV
Sbjct: 180 HVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVR 239
Query: 240 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES---- 295
+LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A E
Sbjct: 240 KLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQI 299
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
+ TEFD TEK I PMGGF HYG+V ++L++KGC GP+KR +TLR+S+ QT R AL
Sbjct: 300 STGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAAL 359
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
E+I LKFIDTSSKFGHG QT ++K KY+G K+
Sbjct: 360 EKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393
>CGD|CAL0006304 [details] [associations]
symbol:RPL3 species:5476 "Candida albicans" [GO:0009986 "cell
surface" evidence=IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
CGD:CAL0006304 GO:GO:0009986 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0032040 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
HOGENOM:HOG000107319 EMBL:AACQ01000248 EMBL:AACQ01000247
RefSeq:XP_710673.1 RefSeq:XP_710682.1 ProteinModelPortal:Q59LS1
SMR:Q59LS1 STRING:Q59LS1 GeneID:3647719 GeneID:3647728
KEGG:cal:CaO19.1601 KEGG:cal:CaO19.9169 Uniprot:Q59LS1
Length = 389
Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
Identities = 242/388 (62%), Positives = 300/388 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKRA++ RG+VK+FPKD SKP LTAFLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPP+ +TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW TD K ++ +L ++KKY +V+RVLAHTQI+K L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSGKYATD--AKQVETELARIKKYASVVRVLAHTQIKKTP-LSQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGSV+ KVD+A FEK++ +D+VF++DEMID+I VTKG G+EGV RWG +
Sbjct: 178 LAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V++TVARAGQNGYHHRT +N K+Y++GK + E++ A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGTDEANGA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRT+K I PMGGF YG VN D++L+KG G KKRVVTLR+SL TSR A+E++ L
Sbjct: 297 EFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGVKKRVVTLRKSLYVDTSRRAVEKVNL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+S+FG GRFQT EK + G LK
Sbjct: 357 KWIDTASRFGKGRFQTPAEKHAFMGTLK 384
>UNIPROTKB|Q59LS1 [details] [associations]
symbol:RPL3 "Likely cytosolic ribosomal protein L3"
species:237561 "Candida albicans SC5314" [GO:0009986 "cell surface"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
InterPro:IPR000597 Pfam:PF00297 CGD:CAL0006304 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0032040
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
EMBL:AACQ01000248 EMBL:AACQ01000247 RefSeq:XP_710673.1
RefSeq:XP_710682.1 ProteinModelPortal:Q59LS1 SMR:Q59LS1
STRING:Q59LS1 GeneID:3647719 GeneID:3647728 KEGG:cal:CaO19.1601
KEGG:cal:CaO19.9169 Uniprot:Q59LS1
Length = 389
Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
Identities = 242/388 (62%), Positives = 300/388 (77%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKRA++ RG+VK+FPKD SKP LTAFLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRAAKQRGRVKSFPKDVKSKPVALTAFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPP+ +TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREVVEAATVVDTPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW TD K ++ +L ++KKY +V+RVLAHTQI+K L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSGKYATD--AKQVETELARIKKYASVVRVLAHTQIKKTP-LSQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGSV+ KVD+A FEK++ +D+VF++DEMID+I VTKG G+EGV RWG +
Sbjct: 178 LAEIQINGGSVSDKVDWAKEHFEKEVSVDSVFEQDEMIDVIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V++TVARAGQNGYHHRT +N K+Y++GK + E++ A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVNWTVARAGQNGYHHRTSINHKVYRVGKGTDEANGA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRT+K I PMGGF YG VN D++L+KG G KKRVVTLR+SL TSR A+E++ L
Sbjct: 297 EFDRTKKTINPMGGFVRYGNVNNDFVLLKGSIPGVKKRVVTLRKSLYVDTSRRAVEKVNL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+S+FG GRFQT EK + G LK
Sbjct: 357 KWIDTASRFGKGRFQTPAEKHAFMGTLK 384
>ZFIN|ZDB-GENE-030131-1291 [details] [associations]
symbol:rpl3 "ribosomal protein L3" species:7955
"Danio rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0031017
"exocrine pancreas development" evidence=IMP] InterPro:IPR000597
Pfam:PF00297 ZFIN:ZDB-GENE-030131-1291 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0031017 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOVERGEN:HBG001864
CTD:6122 EMBL:AY561514 IPI:IPI00511925 RefSeq:NP_001001590.1
UniGene:Dr.141319 ProteinModelPortal:Q6Q418 SMR:Q6Q418
STRING:Q6Q418 PRIDE:Q6Q418 GeneID:322571 KEGG:dre:322571
InParanoid:Q6Q418 NextBio:20807854 ArrayExpress:Q6Q418 Bgee:Q6Q418
Uniprot:Q6Q418
Length = 403
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 239/394 (60%), Positives = 297/394 (75%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF P HGSLGFLPRKR RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPLHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP+ TPRGLRS T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTVVETPPMIVVGVVGYVMTPRGLRSFKTIFAEHISDECKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + ++GKK ++ MKKYC +IR++AHTQ+R + +QKK+H
Sbjct: 121 NWYKSKKKAFTKYCKRWQDEEGKKQLEKDFSSMKKYCQIIRIIAHTQMRLLPH-RQKKSH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQ+NGG+++ KVD+A E+ IPI VF +DEMID+IGVTKG G +GV +RW +
Sbjct: 180 LMEIQLNGGTISDKVDWAREKLEQSIPIANVFSQDEMIDVIGVTKGHGCKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----- 295
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGVGYHNKDGKLV 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D + K I P+GGF HYG V D+L++KGC VG KKRV+TLR+SLL QTSR A
Sbjct: 300 KNNASTDYDLSNKSINPLGGFVHYGEVTNDFLMLKGCVVGTKKRVLTLRKSLLVQTSRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
E+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 QEKIDLKFIDTTSKFGHGRFQTIEEKKTFMGPLK 393
>SGD|S000005589 [details] [associations]
symbol:RPL3 "Ribosomal 60S subunit protein L3" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;TAS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0002181 "cytoplasmic translation" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=TAS] InterPro:IPR000597 Pfam:PF00297
SGD:S000005589 EMBL:BK006948 GO:GO:0003735 GO:GO:0002181
EMBL:Z70678 PDB:4B6A PDBsum:4B6A GO:GO:0000027 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087 InterPro:IPR019926
PROSITE:PS00474 PDB:1K5Y PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:1K5Y PDBsum:1S1I PDBsum:3IZS PDBsum:3O58
PDBsum:3O5H PDBsum:3U5E PDBsum:3U5I KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 OrthoDB:EOG4CG3HR GeneTree:ENSGT00390000017606
EMBL:J01351 EMBL:Z74971 PIR:S66946 RefSeq:NP_014706.1
ProteinModelPortal:P14126 SMR:P14126 DIP:DIP-6264N IntAct:P14126
MINT:MINT-604187 STRING:P14126 PaxDb:P14126 PeptideAtlas:P14126
PRIDE:P14126 EnsemblFungi:YOR063W GeneID:854229 KEGG:sce:YOR063W
EvolutionaryTrace:P14126 NextBio:976109 Genevestigator:P14126
GermOnline:YOR063W Uniprot:P14126
Length = 387
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 236/388 (60%), Positives = 292/388 (75%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+ +TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW DG I+ +L ++KKY +V+RVL HTQIRK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKY-AQDGA-GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK E++ A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
FDRT+K ITPMGGF HYG + D++++KGC G +KR+VTLR+SL TSR ALEE+ L
Sbjct: 297 SFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>UNIPROTKB|Q3SZ10 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9913
"Bos taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 eggNOG:COG0087
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 HOGENOM:HOG000107319
EMBL:BC103272 IPI:IPI00711650 RefSeq:NP_001030578.1
UniGene:Bt.98804 ProteinModelPortal:Q3SZ10 SMR:Q3SZ10 STRING:Q3SZ10
PRIDE:Q3SZ10 Ensembl:ENSBTAT00000012541 GeneID:618440
KEGG:bta:618440 CTD:6123 GeneTree:ENSGT00390000017606
HOVERGEN:HBG001864 InParanoid:Q3SZ10 OMA:AQEKRVF OrthoDB:EOG43XV3G
NextBio:20901186 Uniprot:Q3SZ10
Length = 407
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 232/394 (58%), Positives = 291/394 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPL TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
+W DGKK +Q MKKYC VIRV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+ME+Q+NGG+VA+KV +A EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA-SQES---- 295
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G+ E
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVV 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T +D T+K ITP+GGFPHYG VN D++++KGC G KKRV+TLR+SLL SR A
Sbjct: 300 KNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE I+LKFIDT+SKFGHGRFQT QEK + G K
Sbjct: 360 LENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
>GENEDB_PFALCIPARUM|PF10_0272 [details] [associations]
symbol:PF10_0272 "ribosomal protein L3,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
EMBL:AE014185 InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625
InterPro:IPR019926 PROSITE:PS00474 KO:K02925 OMA:GFHQRTE
HOGENOM:HOG000107319 ProtClustDB:PTZ00103 RefSeq:XP_001347556.1
ProteinModelPortal:Q8IJC6 SMR:Q8IJC6 IntAct:Q8IJC6
MINT:MINT-1573865 PRIDE:Q8IJC6 EnsemblProtists:PF10_0272:mRNA
GeneID:810429 KEGG:pfa:PF10_0272 EuPathDB:PlasmoDB:PF3D7_1027800
Uniprot:Q8IJC6
Length = 386
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 233/388 (60%), Positives = 287/388 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGFLPRKR R RGK+++FPKDD KP TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSKLHKKE EA TIIE P+ +TP+GLR L TVWA H+++E RRR+YK
Sbjct: 61 DKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + K+ L++++KYCTV+R + HTQ K L+ KKAH
Sbjct: 121 NW---YKSEKKAFTKSLNVPEATKN--CLLKRIEKYCTVLRAICHTQPSKTP-LRMKKAH 174
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+ME+Q+NGGS+ +K++F EK +P+ VF +EMID+I VTKG G +GVV+R+GV R
Sbjct: 175 IMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKR 234
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARV F + R GQ GY HRTE NKKIY++G + + +SA T
Sbjct: 235 LPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKT-DKNSAST 293
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+ D TEK ITPMGGFPHYGVVNED+LL+KGC G KKR +TLR++++ Q SR AL ++ L
Sbjct: 294 DADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRKNIVPQVSRDALAQVSL 353
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
KFIDTSSK GHGRFQT++EK KYYG LK
Sbjct: 354 KFIDTSSKIGHGRFQTSEEKVKYYGPLK 381
>UNIPROTKB|Q8IJC6 [details] [associations]
symbol:PF10_0272 "60S ribosomal protein L3, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISS] InterPro:IPR000597
Pfam:PF00297 GO:GO:0006412 GO:GO:0003735 EMBL:AE014185
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926
PROSITE:PS00474 KO:K02925 OMA:GFHQRTE HOGENOM:HOG000107319
ProtClustDB:PTZ00103 RefSeq:XP_001347556.1
ProteinModelPortal:Q8IJC6 SMR:Q8IJC6 IntAct:Q8IJC6
MINT:MINT-1573865 PRIDE:Q8IJC6 EnsemblProtists:PF10_0272:mRNA
GeneID:810429 KEGG:pfa:PF10_0272 EuPathDB:PlasmoDB:PF3D7_1027800
Uniprot:Q8IJC6
Length = 386
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 233/388 (60%), Positives = 287/388 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGFLPRKR R RGK+++FPKDD KP TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSKLHKKE EA TIIE P+ +TP+GLR L TVWA H+++E RRR+YK
Sbjct: 61 DKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW + K+ L++++KYCTV+R + HTQ K L+ KKAH
Sbjct: 121 NW---YKSEKKAFTKSLNVPEATKN--CLLKRIEKYCTVLRAICHTQPSKTP-LRMKKAH 174
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+ME+Q+NGGS+ +K++F EK +P+ VF +EMID+I VTKG G +GVV+R+GV R
Sbjct: 175 IMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKR 234
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARV F + R GQ GY HRTE NKKIY++G + + +SA T
Sbjct: 235 LPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKT-DKNSAST 293
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+ D TEK ITPMGGFPHYGVVNED+LL+KGC G KKR +TLR++++ Q SR AL ++ L
Sbjct: 294 DADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRKNIVPQVSRDALAQVSL 353
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
KFIDTSSK GHGRFQT++EK KYYG LK
Sbjct: 354 KFIDTSSKIGHGRFQTSEEKVKYYGPLK 381
>UNIPROTKB|F1P5V2 [details] [associations]
symbol:RPL3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0006412 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625 InterPro:IPR019926
PROSITE:PS00474 GeneTree:ENSGT00390000017606 OMA:AQEKRVF
EMBL:AADN02023671 IPI:IPI00587737 Ensembl:ENSGALT00000008758
Uniprot:F1P5V2
Length = 421
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 233/393 (59%), Positives = 290/393 (73%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SH KF PRHG LGFLP KR+ RHRGKVK +PKDDPSKP LTAF+GYKAGMTH +R+V
Sbjct: 21 SHHKFSAPRHGHLGFLPHKRSRRHRGKVKTWPKDDPSKPVHLTAFMGYKAGMTHTLREVH 80
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PG ++ K+E EAVTIIETPP+ TP+GLR+ TV+A+H+++E RRRFYKN
Sbjct: 81 RPGLRISKREEVEAVTIIETPPMVVVGVVGYIDTPKGLRNFKTVFAEHISDECRRRFYKN 140
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + +DGKK ++ MKKYC VIRV+ HTQ+ K+ L+QKKAH+
Sbjct: 141 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFAAMKKYCKVIRVIMHTQM-KLLPLRQKKAHV 199
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 241
MEIQ+NGG+VA+KVD+ EKQI + +VF ++EMID+IGVTKG G +GV +RW +L
Sbjct: 200 MEIQLNGGTVAEKVDWVRERLEKQISVHSVFSQNEMIDVIGVTKGHGMKGVTSRWHSKKL 259
Query: 242 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------ 295
PRKTH+GLRKVACIGAWHPARV ++VARAGQ GYHHRTE+NKKI+++G
Sbjct: 260 PRKTHKGLRKVACIGAWHPARVGYSVARAGQKGYHHRTELNKKIFRIGHGIHVEDGKVVK 319
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
++A T +D TEK ITP+GGFPHYG VN D+L++KGC VGPKKRV+TLR+SLL T R A
Sbjct: 320 NNASTNYDVTEKTITPLGGFPHYGEVNNDFLMLKGCVVGPKKRVLTLRKSLLVHTRRRAH 379
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
E I+LKFIDT+SKFGHG FQT QEK + G K
Sbjct: 380 EAIELKFIDTTSKFGHGCFQTAQEKRAFMGPQK 412
>UNIPROTKB|Q92901 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9606
"Homo sapiens" [GO:0006412 "translation" evidence=NAS;TAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000597 Pfam:PF00297 Reactome:REACT_116125 GO:GO:0000184
GO:GO:0006413 GO:GO:0003723 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 EMBL:AE006640
eggNOG:COG0087 InterPro:IPR019926 PROSITE:PS00474 KO:K02925
HOGENOM:HOG000107319 CTD:6123 HOVERGEN:HBG001864 OMA:AQEKRVF
OrthoDB:EOG43XV3G EMBL:U65581 EMBL:BC050413 IPI:IPI00219335
RefSeq:NP_005052.1 UniGene:Hs.657266 ProteinModelPortal:Q92901
SMR:Q92901 IntAct:Q92901 STRING:Q92901 PhosphoSite:Q92901
DMDM:2500230 PaxDb:Q92901 PeptideAtlas:Q92901 PRIDE:Q92901
Ensembl:ENST00000268661 GeneID:6123 KEGG:hsa:6123 UCSC:uc002cnh.3
GeneCards:GC16M001993 HGNC:HGNC:10351 HPA:HPA049136
neXtProt:NX_Q92901 PharmGKB:PA34746 InParanoid:Q92901
PhylomeDB:Q92901 GenomeRNAi:6123 NextBio:23783 Bgee:Q92901
CleanEx:HS_RPL3L Genevestigator:Q92901 GermOnline:ENSG00000140986
Uniprot:Q92901
Length = 407
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 230/394 (58%), Positives = 288/394 (73%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPL TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
+W DGKK +Q MKKYC VIRV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----- 295
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKI+++G+
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLV 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T +D T K ITP+GGFPHYG VN D++++KGC G KKRV+TLR+SLL SR A
Sbjct: 300 KNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
+E I+LKFIDT+SKFGHGRFQT QEK + G K
Sbjct: 360 VENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
>UNIPROTKB|G5E9G0 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
EMBL:CH471095 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 ChiTaRS:RPL3
EMBL:AL022326 UniGene:Hs.119598 HGNC:HGNC:10332 EMBL:AB266619
ProteinModelPortal:G5E9G0 SMR:G5E9G0 PRIDE:G5E9G0
Ensembl:ENST00000401609 ArrayExpress:G5E9G0 Bgee:G5E9G0
Uniprot:G5E9G0
Length = 351
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 203/342 (59%), Positives = 261/342 (76%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE 112
MTHIVR+V++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISD 60
Query: 113 EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMK 172
E +RRFYKNW + +DGKK ++ MKKYC VIRV+AHTQ+R +
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP 120
Query: 173 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGV 232
L+QKKAHLMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV
Sbjct: 121 -LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGV 179
Query: 233 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA- 291
+RW +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 180 TSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGY 239
Query: 292 -----SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 346
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SL
Sbjct: 240 LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL 299
Query: 347 LKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
L QT R ALE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 300 LVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 341
>UNIPROTKB|H7C422 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474 ChiTaRS:RPL3
EMBL:AL022326 HGNC:HGNC:10332 ProteinModelPortal:H7C422
PRIDE:H7C422 Ensembl:ENST00000453303 Bgee:H7C422 Uniprot:H7C422
Length = 305
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 183/278 (65%), Positives = 223/278 (80%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 29 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 88
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYKN
Sbjct: 89 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 148
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAHL
Sbjct: 149 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHL 207
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL 241
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +L
Sbjct: 208 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 267
Query: 242 PRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRT 279
PRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRT
Sbjct: 268 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRT 305
>UNIPROTKB|B5MCW2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOGENOM:HOG000107319
HOVERGEN:HBG001864 OrthoDB:EOG43XV3G ChiTaRS:RPL3 EMBL:AL022326
HGNC:HGNC:10332 IPI:IPI00877787 ProteinModelPortal:B5MCW2
SMR:B5MCW2 STRING:B5MCW2 Ensembl:ENST00000402527
ArrayExpress:B5MCW2 Bgee:B5MCW2 Uniprot:B5MCW2
Length = 272
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 158/273 (57%), Positives = 206/273 (75%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE 112
MTHIVR+V++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISD 60
Query: 113 EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMK 172
E +RRFYKNW + +DGKK ++ MKKYC VIRV+AHTQ+R +
Sbjct: 61 ECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP 120
Query: 173 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGV 232
L+QKKAHLMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV
Sbjct: 121 -LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGV 179
Query: 233 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA- 291
+RW +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 180 TSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGY 239
Query: 292 -----SQESHSAMTEFDRTEKDITPMGGFPHYG 319
++A T++D ++K I P+GGF HYG
Sbjct: 240 LIKDGKLIKNNASTDYDLSDKSINPLGGFVHYG 272
>UNIPROTKB|H9L0E4 [details] [associations]
symbol:H9L0E4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 InterPro:IPR019926 PROSITE:PS00474
GeneTree:ENSGT00390000017606 EMBL:AADN02062084
Ensembl:ENSGALT00000022725 Uniprot:H9L0E4
Length = 237
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 147/228 (64%), Positives = 185/228 (81%)
Query: 167 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKG 226
Q+R + L+QKK+HLMEIQVNGG+VA+KVD+A E+Q+P+ +VF +DEMID+IGVTKG
Sbjct: 1 QMRLLP-LRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVPVSSVFGQDEMIDVIGVTKG 59
Query: 227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIY 286
KGY+GV +RW +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIY
Sbjct: 60 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIY 119
Query: 287 KLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVV 340
K+G+ Q ++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+
Sbjct: 120 KIGQGYQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVL 179
Query: 341 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 180 TLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTAEEKKSFMGPLK 227
>UNIPROTKB|H7C3M2 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 ChiTaRS:RPL3 EMBL:AL022326 HGNC:HGNC:10332
ProteinModelPortal:H7C3M2 PRIDE:H7C3M2 Ensembl:ENST00000427905
Uniprot:H7C3M2
Length = 261
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 143/229 (62%), Positives = 179/229 (78%)
Query: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVE 61
SHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V+
Sbjct: 34 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 93
Query: 62 KPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYKN
Sbjct: 94 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 153
Query: 122 WCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHL 181
W + +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAHL
Sbjct: 154 WHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHL 212
Query: 182 MEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYE 230
MEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+
Sbjct: 213 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 261
>RGD|1306315 [details] [associations]
symbol:Rpl3l "ribosomal protein L3-like" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA;ISO]
InterPro:IPR000597 Pfam:PF00297 RGD:1306315 GO:GO:0006412
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 GO:GO:0022625
InterPro:IPR019926 PROSITE:PS00474 GeneTree:ENSGT00390000017606
IPI:IPI00369231 PRIDE:D4A9G1 Ensembl:ENSRNOT00000019660
UCSC:RGD:1306315 OrthoDB:EOG4M3999 Uniprot:D4A9G1
Length = 240
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 136/225 (60%), Positives = 174/225 (77%)
Query: 170 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGY 229
K+ +QKKAH+MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G
Sbjct: 2 KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGV 61
Query: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLG 289
+GV +RW +LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G
Sbjct: 62 KGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIG 121
Query: 290 KA-SQES-----HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 343
+ E ++A T +D T+K ITP+GGFPHYG VN D++++KGC G KKRV+TLR
Sbjct: 122 RGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 181
Query: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
+SLL SR ALE I+LKFIDT+SKFGHG FQT QEK + G K
Sbjct: 182 KSLLVHHSRRALENIELKFIDTTSKFGHGCFQTAQEKRAFMGPQK 226
>UNIPROTKB|F1N578 [details] [associations]
symbol:F1N578 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0005730 GO:GO:0006412 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0022625 GeneTree:ENSGT00390000017606
EMBL:DAAA02032569 IPI:IPI00686963 Ensembl:ENSBTAT00000038407
Uniprot:F1N578
Length = 340
Score = 427 (155.4 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 94/218 (43%), Positives = 137/218 (62%)
Query: 174 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVV 233
L QKKAHL E QVN G VA K+D+A+ E+Q+P++ +F+ + +IG TKGK Y+G+
Sbjct: 130 LCQKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGIS 187
Query: 234 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 293
+ W ++P KTH+ + ACI W +VA A Q G HH T +NKKIYK+G+
Sbjct: 188 SHWYTKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYL 240
Query: 294 ESHSAMTEFDRTE---KDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQT 350
+ + + + + K I+P+GG H G V D++++K C VG KKRV++L +SLL +T
Sbjct: 241 IKNGKIIKNNASTDYTKSISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLLMRT 300
Query: 351 SRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
+ L+++ KFIDT+SKFGHG FQ EK + G LK
Sbjct: 301 KQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Score = 262 (97.3 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 50/97 (51%), Positives = 69/97 (71%)
Query: 20 KRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTII 79
K +S+H+GKV FPKD SKP L+AFLGY+AGMTH+VR V++PGSK+HKKE E VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 80 ETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRR 116
ET P +T GL++ +V+A+H++ E +R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
>RGD|1308952 [details] [associations]
symbol:Rab11fip3 "RAB11 family interacting protein 3 (class II)"
species:10116 "Rattus norvegicus" [GO:0000910 "cytokinesis"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0004550 "nucleoside diphosphate kinase activity"
evidence=IEA] [GO:0005509 "calcium ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005768 "endosome" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0005825 "half bridge of spindle pole
body" evidence=ISO] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228
"UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP
biosynthetic process" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0016020 "membrane" evidence=ISO] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017137 "Rab GTPase
binding" evidence=ISO] [GO:0030306 "ADP-ribosylation factor
binding" evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
[GO:0032154 "cleavage furrow" evidence=ISO] [GO:0032456 "endocytic
recycling" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0055037 "recycling endosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000597 InterPro:IPR001564 InterPro:IPR002048
InterPro:IPR002198 Pfam:PF00106 Pfam:PF00297 Pfam:PF00334
PRINTS:PR01243 PROSITE:PS50222 SMART:SM00562 InterPro:IPR016040
RGD:1308952 RGD:1591334 RGD:71002 GO:GO:0005739 GO:GO:0005524
GO:GO:0032403 Gene3D:3.40.50.720 GO:GO:0006412 GO:GO:0016491
GO:GO:0005840 GO:GO:0003735 GO:GO:0055114 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006183 GO:GO:0004550 GO:GO:0006241
GO:GO:0006228 Gene3D:3.30.70.141 SUPFAM:SSF54919 InterPro:IPR019926
PROSITE:PS00474 EMBL:AC126071 UniGene:Rn.17377 EMBL:AY383698
IPI:IPI00421361 HSSP:P15531 SMR:Q6TXF6 STRING:Q6TXF6
Ensembl:ENSRNOT00000027501 Genevestigator:Q6TXF6 Uniprot:Q6TXF6
Length = 867
Score = 488 (176.8 bits), Expect = 8.8e-46, P = 8.8e-46
Identities = 91/166 (54%), Positives = 125/166 (75%)
Query: 189 GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
G+VA+K+D+A P++ VF + EMID++G+TKGKGY+GV +RW + PRKTH+G
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKGVTSRWHTKKPPRKTHQG 386
Query: 249 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEF 302
LRKVACIGAW PA V+F+VARAGQ GYHH+TE NKKIYK+G+ ++A T++
Sbjct: 387 LRKVACIGAWLPAHVAFSVARAGQKGYHHQTETNKKIYKIGQGYLIKDGKLTKNNASTDY 446
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLK 348
D +++ I P+GGF HYG V D+L+++GC VG KKRV+TLR+SLL+
Sbjct: 447 DLSDRSINPLGGFVHYGEVTNDFLMLEGCVVGTKKRVLTLRKSLLE 492
>RGD|1591334 [details] [associations]
symbol:Nme4 "NME/NM23 nucleoside diphosphate kinase 4"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0004550 "nucleoside
diphosphate kinase activity" evidence=IEA;ISO] [GO:0005509 "calcium
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006183 "GTP biosynthetic process"
evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA]
[GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IDA]
InterPro:IPR000597 InterPro:IPR001564 InterPro:IPR002048
InterPro:IPR002198 Pfam:PF00106 Pfam:PF00297 Pfam:PF00334
PRINTS:PR01243 PROSITE:PS50222 SMART:SM00562 InterPro:IPR016040
RGD:1308952 RGD:1591334 RGD:71002 GO:GO:0005739 GO:GO:0005524
GO:GO:0032403 Gene3D:3.40.50.720 GO:GO:0006412 GO:GO:0016491
GO:GO:0005840 GO:GO:0003735 GO:GO:0055114 InterPro:IPR009000
SUPFAM:SSF50447 GO:GO:0006183 GO:GO:0004550 GO:GO:0006241
GO:GO:0006228 Gene3D:3.30.70.141 SUPFAM:SSF54919 InterPro:IPR019926
PROSITE:PS00474 EMBL:AC126071 UniGene:Rn.17377 EMBL:AY383698
IPI:IPI00421361 HSSP:P15531 SMR:Q6TXF6 STRING:Q6TXF6
Ensembl:ENSRNOT00000027501 Genevestigator:Q6TXF6 Uniprot:Q6TXF6
Length = 867
Score = 488 (176.8 bits), Expect = 8.8e-46, P = 8.8e-46
Identities = 91/166 (54%), Positives = 125/166 (75%)
Query: 189 GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
G+VA+K+D+A P++ VF + EMID++G+TKGKGY+GV +RW + PRKTH+G
Sbjct: 327 GTVAEKLDWAREAAGAAGPLNQVFGQGEMIDVMGMTKGKGYKGVTSRWHTKKPPRKTHQG 386
Query: 249 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEF 302
LRKVACIGAW PA V+F+VARAGQ GYHH+TE NKKIYK+G+ ++A T++
Sbjct: 387 LRKVACIGAWLPAHVAFSVARAGQKGYHHQTETNKKIYKIGQGYLIKDGKLTKNNASTDY 446
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLK 348
D +++ I P+GGF HYG V D+L+++GC VG KKRV+TLR+SLL+
Sbjct: 447 DLSDRSINPLGGFVHYGEVTNDFLMLEGCVVGTKKRVLTLRKSLLE 492
>UNIPROTKB|D4A136 [details] [associations]
symbol:D4A136 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000597
Pfam:PF00297 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 GeneTree:ENSGT00390000017606
OrthoDB:EOG43XV3G IPI:IPI00559256 PRIDE:D4A136
Ensembl:ENSRNOT00000051650 Uniprot:D4A136
Length = 380
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 115/256 (44%), Positives = 157/256 (61%)
Query: 140 DDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAY 199
D GK+ ++ + + MKKYC VI ++AHTQ+ + L QKKAHLMEIQV G
Sbjct: 134 DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLS-LHQKKAHLMEIQVMGHC--------- 183
Query: 200 GFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR-LPRKTHRGLRKVACIGAW 258
G ++ AV Q DE+ID+I TKG GY+GV TR + R P + G K+ C+GAW
Sbjct: 184 GLSWRE----AVNQ-DEIIDVIKETKGNGYKGV-TRVDIQRNCPERPIEGCPKL-CVGAW 236
Query: 259 HPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPM 312
HPARV+F+VA+ GQ GYHH + NKKI K+G+ ++A TE+ ++K I +
Sbjct: 237 HPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLL 295
Query: 313 GGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHG 372
GGF HYG V D++ +KGC V KK + T+ + LL QT + AL++I K DT+ K GHG
Sbjct: 296 GGFVHYGEVTNDFIRLKGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHG 354
Query: 373 RFQTTQEKAKYYGRLK 388
FQTT+ K + G LK
Sbjct: 355 CFQTTEGKRAFIGPLK 370
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 90/188 (47%), Positives = 120/188 (63%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MS+R F PRHGSLGF P+K + H GKVK FPKDD SKP LT FL +KA MTHI++ V
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++P SK++KKE E V I+ETPP+ + PRGL + V+A+H++ + ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 121 NWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW D GK+ ++ + + MKKYC VI ++AHTQ+ + L QKKAH
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLS-LHQKKAH 173
Query: 181 LMEIQVNG 188
LMEIQV G
Sbjct: 174 LMEIQVMG 181
>UNIPROTKB|F8WCR1 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 ChiTaRS:RPL3 EMBL:AL022326 HGNC:HGNC:10332
IPI:IPI00878827 ProteinModelPortal:F8WCR1 SMR:F8WCR1 PRIDE:F8WCR1
Ensembl:ENST00000420536 ArrayExpress:F8WCR1 Bgee:F8WCR1
Uniprot:F8WCR1
Length = 180
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+ +TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 N 121
N
Sbjct: 121 N 121
>UNIPROTKB|Q29293 [details] [associations]
symbol:RPL3 "60S ribosomal protein L3" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=ISS] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 Pfam:PF00297 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PROSITE:PS00474 HOVERGEN:HBG001864 EMBL:F14648
Uniprot:Q29293
Length = 130
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 76/130 (58%), Positives = 101/130 (77%)
Query: 205 QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS 264
++P++ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPAR +
Sbjct: 1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXA 60
Query: 265 FTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHY 318
F+VARAGQ GYHHRTE+NKKIYK+G+ ++ T++D ++K I P+G F HY
Sbjct: 61 FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHY 120
Query: 319 GVVNEDYLLI 328
G V D++++
Sbjct: 121 GEVTNDFVML 130
>UNIPROTKB|H3BQN3 [details] [associations]
symbol:RPL3L "60S ribosomal protein L3-like" species:9606
"Homo sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000597 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC005363
HGNC:HGNC:10351 Ensembl:ENST00000565426 Bgee:H3BQN3 Uniprot:H3BQN3
Length = 43
Score = 111 (44.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 53 MTHIVRDVEKPGSKLHKKETCEAVTIIETPPL 84
MTH +R+V +PG K+ K+E EAVTI+ETPPL
Sbjct: 1 MTHTLREVHRPGLKISKREEVEAVTIVETPPL 32
>UNIPROTKB|P42920 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:2000234 "positive
regulation of rRNA processing" evidence=IDA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0019843
GO:GO:0006364 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B EMBL:U43929 EMBL:D50302
EMBL:D64127 PIR:G69694 RefSeq:NP_387997.1 ProteinModelPortal:P42920
SMR:P42920 EnsemblBacteria:EBBACT00000003514 GeneID:936239
KEGG:bsu:BSU01160 PATRIC:18971741 GenoList:BSU01160
BioCyc:BSUB:BSU01160-MONOMER GO:GO:2000234 Uniprot:P42920
Length = 209
Score = 103 (41.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 204 KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAWHPA 261
+++ ++ +F E++D+ GV+KGKG++G + R G +R P +H R R+ +G P
Sbjct: 95 QEVKVE-IFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPM-SHGSRYHRRPGSMGPVDPN 152
Query: 262 RVSFTVARAGQNGYHHRTEMNKKIYKL 288
RV G+ G T N +I K+
Sbjct: 153 RVFKGKLLPGRMGGEQITVQNLEIVKV 179
Score = 45 (20.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 326 LLIKGCCVGPKKRVVTLRQSL 346
LLIKG G KK ++T++ ++
Sbjct: 186 LLIKGNVPGAKKSLITVKSAV 206
>TIGR_CMR|BA_0110 [details] [associations]
symbol:BA_0110 "ribosomal protein L3" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906
OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 RefSeq:NP_842678.1 RefSeq:YP_016715.1
RefSeq:YP_026396.1 ProteinModelPortal:Q81VT0 SMR:Q81VT0
PRIDE:Q81VT0 DNASU:1087637 EnsemblBacteria:EBBACT00000011145
EnsemblBacteria:EBBACT00000018294 EnsemblBacteria:EBBACT00000021192
GeneID:1087637 GeneID:2818190 GeneID:2852418 KEGG:ban:BA_0110
KEGG:bar:GBAA_0110 KEGG:bat:BAS0110 ProtClustDB:PRK00001
BioCyc:BANT260799:GJAJ-121-MONOMER
BioCyc:BANT261594:GJ7F-123-MONOMER HAMAP:MF_01325_B Uniprot:Q81VT0
Length = 210
Score = 108 (43.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 204 KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAWHPA 261
+++ +D VF E++D+ G++KGKG++GV+ R G +R P +H R R+ +G P
Sbjct: 95 QEVKVD-VFATGEIVDVTGISKGKGFQGVIKRHGQSRGPM-SHGSRYHRRPGSMGPVAPN 152
Query: 262 RVSFTVARAGQNGYHHRTEMNKKIYKL 288
RV AG+ G T N +I ++
Sbjct: 153 RVFKGKKLAGRMGGDQVTIQNLEIVQV 179
Score = 37 (18.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 326 LLIKGCCVGPKKRVVTLR 343
LL+KG G KK +V ++
Sbjct: 186 LLVKGNVPGAKKSLVVVQ 203
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 389 366 0.00084 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 615 (65 KB)
Total size of DFA: 246 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 26.55u 0.09s 26.64t Elapsed: 00:00:01
Total cpu time: 26.56u 0.09s 26.65t Elapsed: 00:00:02
Start: Sat May 11 09:24:21 2013 End: Sat May 11 09:24:23 2013