BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016469
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3
PE=2 SV=2
Length = 389
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/389 (87%), Positives = 371/389 (95%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPPLV+VG+V YVKTPRGLRSL +VWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NWCKSKKKAFTKY KY++D GKK+IQ QLEKMKKY +++RV+AHTQIRKMKGLKQKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A T
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRTEKDITPMGGFPHYGVV DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL
Sbjct: 301 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
KFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct: 361 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2
SV=4
Length = 390
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/386 (88%), Positives = 374/386 (96%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETPP+VVVGVVGYVKTPRGLRSLCTVWAQHL+EE+RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFT+Y+KK+ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGG +A+KVD+A FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK QE+HSAMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKL
Sbjct: 301 EYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGR 386
KFID +S GHGRFQT+QEKAK+YGR
Sbjct: 361 KFIDAASNGGHGRFQTSQEKAKFYGR 386
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2
SV=5
Length = 389
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/387 (86%), Positives = 367/387 (94%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+V
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSKLHKKETCEAVTIIETP +VVVGVV YVKTPRGLRSL TVWAQHL+EEVRRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFT Y K+Y+++DGKK IQAQLEKMKKY TVIRVLAHTQIRKMKGLKQKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK E+H+AMT
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMT 300
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKL
Sbjct: 301 EYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKL 360
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRL 387
KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct: 361 KFIDTASIFGHGRFQTSLEKMRFYNRV 387
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2
Length = 403
Score = 567 bits (1462), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/394 (68%), Positives = 331/394 (84%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/394 (68%), Positives = 330/394 (83%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ D GKK ++ MKKYC VIR++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 563 bits (1450), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/394 (67%), Positives = 329/394 (83%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ D GKK ++ MKKYC VIR++AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2
Length = 403
Score = 560 bits (1444), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/394 (67%), Positives = 328/394 (83%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVTI+ETPP+V+VG+VGYV+TPRGLR+ T++A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LME+QVNGG+VA+K+D+A E+Q+P+ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQE 294
LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3
Length = 403
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/394 (67%), Positives = 329/394 (83%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE AVTI+ETPP+VVVG+VGYV+TPRGLR+ TV+A+H+++E +RRFYK
Sbjct: 61 DRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ +DGKK ++ MKKYC VIRV+AHTQ+R + L+QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGG+VA+K+D+A E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW +
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQE 294
LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+
Sbjct: 240 LPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T++D ++K I P+GGF HYG V D++++KGC VG KKRV+TLR+SLL QT R A
Sbjct: 300 KNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+I LKFIDT+SKFGHGRFQT +EK + G LK
Sbjct: 360 LEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2
Length = 402
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 325/391 (83%), Gaps = 4/391 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V
Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI E PP+V+VG+VGY+ TPRG R TVWA+HL+E+ R RFYK
Sbjct: 61 DKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW SKKKAF K+ KK++ +DG+K I+A L KMKKYC+ IRV+AHTQ++ MK ++KKAH
Sbjct: 121 NWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG+VA+KVD+A EKQ+P+D+VF +DEMID IGVTKGKG++GV +RW +
Sbjct: 180 IMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA---SQESHS 297
LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY+LGK+ + +
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKN 299
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+
Sbjct: 300 GGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEK 359
Query: 358 IKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
I LK+IDTSSKFGHGRFQT EK + G+LK
Sbjct: 360 INLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1
SV=2
Length = 392
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/388 (69%), Positives = 322/388 (82%), Gaps = 3/388 (0%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL FLPRKRA+RHRGKVK+FPKDDP KP LTA +GYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K+HKKE EAVTIIETPPLV VGVVGY++TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK+ ++G I +LE++KKYCTV+RVLAHTQIRK LKQKKAH
Sbjct: 121 NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH 178
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA KVDFA FEK I ID++F+KDEMID+I VTKG G++GV +RWG +
Sbjct: 179 LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK 238
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT N K++++GK S E +A T
Sbjct: 239 LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEG-NAST 297
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD ++K ITPMGGF YG V DY+++KG G KKRV+TLR++L QTSR A E+++L
Sbjct: 298 DFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVEL 357
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDTSSKFGHG FQT +EK + G LK
Sbjct: 358 KWIDTSSKFGHGAFQTPEEKRAFMGTLK 385
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2
SV=1
Length = 401
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 324/391 (82%), Gaps = 4/391 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAVTI+ETPP+V+ GV GYV TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ +DGKK I+A K+KKYC+ IRV+AHTQ++ ++ +QKKAH
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L+EIQVNGG++ QKVD+A EKQ+ +D VF +DEMID IGVT+G G++GV +RW +
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHS 297
LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++ + ++
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNN 299
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
TEFD T+K ITPMGGFP YG+VN+DY++++G +GPKKR++TLR+SL+ QT R+A E+
Sbjct: 300 GSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 359
Query: 358 IKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
I LK+IDTSSK GHGRFQTT EK + G+LK
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3
SV=2
Length = 401
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/391 (64%), Positives = 323/391 (82%), Gaps = 4/391 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KPGSK++KKE EAV+IIETPP+V+ GV GY+ TP+G R+L T+WA+HL+EE RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK++ +DGKK I+A K+KKYC+ IRV+AHTQ++ ++ +QKKAH
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L+EIQ+NGG++ QKVD+A EKQI +D VF +DEMID IGVTKG G++GV +RW +
Sbjct: 180 LVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHS 297
LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++ + ++
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNN 299
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
TEFD T+K I PMGGFP YG+VN+DY++++G +GPKKR++TLR+SL+ QT R+A E+
Sbjct: 300 GSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEK 359
Query: 358 IKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
I LK+IDTSSK GHGRFQTT EK + G+LK
Sbjct: 360 INLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3
PE=3 SV=1
Length = 392
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/388 (67%), Positives = 320/388 (82%), Gaps = 3/388 (0%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSL +LPRKRA+RHRGKVK+FPKDD KP LTA +GYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PG+K HKKE EAVTII+TPP++VVG+VGY++TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KK+ ++G I +LE++KKYCTV+RVLAHTQIRK LKQKKAH
Sbjct: 121 NWYKSKKKAFTKYVKKHSDNNGAA-ITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH 178
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQ+NGGSVA KV+F +G FEK + ID++F+KDE+ID+I VTKG G+ GV RWG +
Sbjct: 179 LMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKK 238
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIY++GK E SA T
Sbjct: 239 LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAAT 297
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E D T+K ITPMGGF YG +N D++++KG G KKRV+TLR+S+ TSR ALE+++L
Sbjct: 298 EVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVEL 357
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDTSS+FGHG FQT EK ++ G LK
Sbjct: 358 KWIDTSSEFGHGAFQTPAEKKQFQGTLK 385
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2
SV=3
Length = 416
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/394 (65%), Positives = 316/394 (80%), Gaps = 7/394 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHGS+ F P+KR++RHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK++KKE EAVT++ETPP++VVG VGY++TP GLR+L VWAQHL+EE RRRFYK
Sbjct: 61 DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTK +KK+ D GKK I+ KM +YC VIRV+AH+QIR +K +QKKAH
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIK-QRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGGS+ KV +A EK I + VF +DEMID +GVTKGKG++GV +RW +
Sbjct: 180 VMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------ 294
LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G
Sbjct: 240 LPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVI 299
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R A
Sbjct: 300 KNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
LE+IKLKFIDTSSK GHGRFQT +K + G LK
Sbjct: 360 LEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1
SV=2
Length = 398
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/390 (65%), Positives = 319/390 (81%), Gaps = 6/390 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHG+LGF PRKRA+RH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+
Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
EKPGSK+HKKE EAVTIIE PP+ +VG+VGYV+T +GL++ TVWAQHL++ RRR YK
Sbjct: 61 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120
Query: 121 NWCKSK-KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKA 179
NW KSK KKAFTKY K+YET++GKK I+A L+ +KK C+V+RV+AHTQ+ K+K L QKKA
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKA 179
Query: 180 HLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
H++EIQVNGGS+ +KV+FA FEK + + VF ++E+ID+IGVTKGKG+ GV+ RWGV
Sbjct: 180 HVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVR 239
Query: 240 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES---- 295
+LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A E
Sbjct: 240 KLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQI 299
Query: 296 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
+ TEFD TEK I PMGGF HYG+V ++L++KGC GP+KR +TLR+S+ QT R AL
Sbjct: 300 STGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAAL 359
Query: 356 EEIKLKFIDTSSKFGHGRFQTTQEKAKYYG 385
E+I LKFIDTSSKFGHG QT ++K KY+G
Sbjct: 360 EKITLKFIDTSSKFGHGLHQTAEDKTKYFG 389
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3b PE=3 SV=2
Length = 388
Score = 540 bits (1391), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/388 (70%), Positives = 318/388 (81%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVTIIETPP+VVVGVVGYV+TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KKY + + I +LE++KKYC+V+RVLAHTQIRK L QKKAH
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD TEK ITPMGGF YGVV D++++ G GP KRV+TLR+SLL TSR ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFGHGRFQT E ++ G LK
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLK 384
>sp|P40372|RL3A_SCHPO 60S ribosomal protein L3-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3a PE=1 SV=2
Length = 388
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/388 (69%), Positives = 318/388 (81%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EAVT+IETPP+VVVGVVGYV+TPRGLRSL TVWA+HL+EEV+RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY KKY + + I +LE++KKYC+V+RVLAHTQIRK L QKKAH
Sbjct: 121 NWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
LMEIQVNGGSVA KV++A FEK + I + F+++EMID+IGVT+GKG EG RWG R
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N KIY++G A ++ +A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNAST 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+FD TEK ITPMGGF YGVV D++++ G GP KRV+TLR+SLL TSR ALE + L
Sbjct: 297 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFGHGRFQT E ++ G LK
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLK 384
>sp|Q759R7|RL3_ASHGO 60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL3 PE=3 SV=2
Length = 387
Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/388 (67%), Positives = 319/388 (82%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAV++++TPP+VVVGVVGY++TPRGLRSL TVWA+HL++E++RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY+ KY D I+ +L ++KKY +V+RVLAHTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGAA--IERELARIKKYASVVRVLAHTQVRKTP-LVQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGSV++KVD+A FEK + +D+VF+++EMID+I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N K+Y++GK E ++A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRT+K ITPMGGF HYG VN D++++KG G +KRVVTLR+SL TSR ALEE+ L
Sbjct: 297 EFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>sp|Q6BXM5|RL3_DEBHA 60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL3 PE=3 SV=1
Length = 389
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/388 (66%), Positives = 312/388 (80%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHGSLGFLPRKR++ RG+VK+FPKD SKP LTAFLGYKAGMT +VRD+
Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK+HK+E EA T+++TPPLVVVGVVGYV+TPRGLRSL TVWA+HL+EEVRRRFYK
Sbjct: 61 DRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY+ KY D + ++ +L ++KKY +V+RVLAHTQI+K L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQVNGGSV+ KVD+A FEK + +D+VF+KDEM+D+ VTKG G+EGV RWG +
Sbjct: 178 LAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N K+Y++G A ES S T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGAT 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRT+K I PMGGF YG V D++L+KG G KKR+VT+R+SL TSR A E + L
Sbjct: 297 EFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>sp|Q6CJR7|RL3_KLULA 60S ribosomal protein L3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL3 PE=3 SV=1
Length = 387
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/388 (65%), Positives = 317/388 (81%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VK+FPKDD +KP LT+FLGYKAGM+ IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY+ KY + + D +L ++KKY +V+RVL HTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAENGAQVD--RELARIKKYASVVRVLVHTQVRKTP-LSQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGSV+ KVD+A FEK + +D+VF+++EMID++ VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK E+++A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
EFDRT+K ITPMGGF HYG +N D++++KG G +KRVVTLR+SL TSR ALEE+ L
Sbjct: 297 EFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3
Length = 407
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/391 (63%), Positives = 310/391 (79%), Gaps = 7/391 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPLVVVGVVGYV TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
+W KSKKKAFTK K++ DGKK +Q MKKYC VIRV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+ME+Q+NGG+VA+KV +A EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----- 295
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKIY++G+
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVV 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T +D T+K ITP+GGFPHYG VN D++++KGC G KKRV+TLR+SLL SR A
Sbjct: 300 KNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYG 385
LE I+LKFIDT+SKFGHGRFQT QEK + G
Sbjct: 360 LENIELKFIDTTSKFGHGRFQTAQEKRAFMG 390
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3
Length = 407
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/391 (63%), Positives = 308/391 (78%), Gaps = 7/391 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+PG K+ K+E EAVTI+ETPPLVVVGVVGYV TPRGLRS T++A+HL++E RRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
+W KSKKKAFTK K++ DGKK +Q MKKYC VIRV+ HTQ+ K+ +QKKAH
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAH 179
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQ+NGG+VA+KV +A EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW +
Sbjct: 180 IMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKK 239
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----- 295
LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKKI+++G+
Sbjct: 240 LPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLV 299
Query: 296 -HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
++A T +D T K ITP+GGFPHYG VN D++++KGC G KKRV+TLR+SLL SR A
Sbjct: 300 KNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQA 359
Query: 355 LEEIKLKFIDTSSKFGHGRFQTTQEKAKYYG 385
+E I+LKFIDT+SKFGHGRFQT QEK + G
Sbjct: 360 VENIELKFIDTTSKFGHGRFQTAQEKRAFMG 390
>sp|Q6FTJ2|RL3_CANGA 60S ribosomal protein L3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL3 PE=3
SV=1
Length = 387
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/388 (66%), Positives = 316/388 (81%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ RG+VK+FPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY+ KY + +I+ +L ++KKY TV+RVL HTQ+RK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQNGA--EIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK E ++A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
FDRT+K I PMGGF HYG+VN D++++KG G KKRVVTLR+SL TSR A+EE+ L
Sbjct: 297 NFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL3 PE=1 SV=4
Length = 387
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/388 (65%), Positives = 313/388 (80%), Gaps = 4/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRK+E PRHG LGFLPRKRA+ R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+
Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSK HK+E EAVT+++TPP+VVVGVVGYV+TPRGLRSL TVWA+HL++EV+RRFYK
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY+ KY D I+ +L ++KKY +V+RVL HTQIRK L QKKAH
Sbjct: 121 NWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAH 177
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
L EIQ+NGGS+++KVD+A FEK + +D+VF+++EMID I VTKG G+EGV RWG +
Sbjct: 178 LAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK E++ A T
Sbjct: 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-T 296
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
FDRT+K ITPMGGF HYG + D++++KGC G +KR+VTLR+SL TSR ALEE+ L
Sbjct: 297 SFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSL 356
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
K+IDT+SKFG GRFQT EK + G LK
Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>sp|O96774|RL3_TETTH Ribosomal protein L3 OS=Tetrahymena thermophila GN=RPL3 PE=1 SV=1
Length = 391
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/386 (60%), Positives = 304/386 (78%), Gaps = 6/386 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFE PRHGSLGF PR+R HRG+ ++FPKDDPSK LTAF G+KAGMTHI+R+V
Sbjct: 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++ GS+ +KKE EAVT+IE PP+ +VGVVGY+ TPRGLR+L TVWA+ ++ ++RFYK
Sbjct: 61 DRSGSRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW S KKAFT + K + D +D+ L++++KYC+V+RV+AHT + K+ L+QKK H
Sbjct: 121 NWANSNKKAFTHHEKNF--DQKAQDL--LLKRIEKYCSVVRVIAHTNMSKL-NLRQKKNH 175
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
++EIQVNGG VA+KV FA EK++ +D++F ++EM+D++GVTKGKG+ GV+ R+GV
Sbjct: 176 ILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKH 235
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
L +KTHRG RKV CIGAWHP+R+ FTV RAGQ GYHHRTE NKK+Y++GK S +A T
Sbjct: 236 LQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGDDAS-NAST 294
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
D T+K ITP+GGFPHYGVV D+++IKGCCVGPKKRV+TLR+S++ QT A E I L
Sbjct: 295 AGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKRVLTLRKSIIPQTHGAAKEIINL 354
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGR 386
KFIDTSSK GHGRFQT +EK K++GR
Sbjct: 355 KFIDTSSKIGHGRFQTVEEKDKFFGR 380
>sp|Q8SQI3|RL3_ENCCU 60S ribosomal protein L3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPL3-1 PE=1 SV=1
Length = 383
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/392 (52%), Positives = 268/392 (68%), Gaps = 19/392 (4%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRD- 59
MS RKF PRHGSL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR
Sbjct: 1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTK 60
Query: 60 VEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFY 119
+ +K +E +AVT++E PP+VV G+VGY KT GLR L V A ++++ V RR +
Sbjct: 61 TQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMF 120
Query: 120 KNWCKSKKKA--FTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQK 177
N SK+ A F K + ++++E +K+ +RVL TQ +KGL K
Sbjct: 121 GNRYASKESAGQFCKGSV----------CESRVEMIKERAHCVRVLVQTQPTLIKGLGLK 170
Query: 178 KAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 237
KAH+ EIQVNGGS+++KV++A G EK+I I VF +E ID IGVTKGKG++G V R+G
Sbjct: 171 KAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFG 230
Query: 238 VTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHS 297
V + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK++Y +G S +
Sbjct: 231 VRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSS---N 287
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
TEFD TEK I+PMGGFPHYG V D++++KG VG +KRVVTLR+SLL+Q A EE
Sbjct: 288 IKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEE 344
Query: 358 IKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389
+ +KF+DTSSK GHGRFQT+ EK +YG KA
Sbjct: 345 LVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376
>sp|C5A286|RL3_THEGJ 50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1
Length = 346
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 193/368 (52%), Gaps = 29/368 (7%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
KE VTI+E PPL V G+ Y + GL + VW LN+ V+RR
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRI------ 112
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI--RVLAHTQIRKMKGLKQKKAHLM 182
K Y +D K + QLE + ++ R+L HTQ +K +KK +M
Sbjct: 113 ------KTLPKNYGEEDFKAKL-GQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVM 163
Query: 183 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
E + G V K ++A K+I V + E++D+I VTKGKG +G V RWGV
Sbjct: 164 EYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQF 223
Query: 243 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ +
Sbjct: 224 HKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------L 277
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+ E DITP GGFPHYG++ D+L+I+G G KR++ +R ++ + +E ++
Sbjct: 278 VLNGNEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQI 337
Query: 361 KFIDTSSK 368
++ SK
Sbjct: 338 TYVSRESK 345
>sp|P54014|RL3_METJA 50S ribosomal protein L3P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl3p PE=3 SV=1
Length = 335
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 200/368 (54%), Gaps = 41/368 (11%)
Query: 6 FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGS 65
PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKS 61
Query: 66 KLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCK 124
+E +TI+E PP+ V + Y + R L +L VWA +L++E+ R+
Sbjct: 62 PNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI------ 115
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
K + +K ++ LE +K +RVL HT K+ L +KK ++EI
Sbjct: 116 -----------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEI 162
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G + +++++A KQ+ I VFQ+ E++D IGVTKGKG++G V RWGV + +
Sbjct: 163 RIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGK 222
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R V IG W P V ++V GQ GYH RTE NK+I K+G E
Sbjct: 223 HARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE-------- 274
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF HYGV+ +Y+++KG GP KR++ LR+++ Q + + EI +
Sbjct: 275 ------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TY 326
Query: 363 IDTSSKFG 370
I T+SK G
Sbjct: 327 ISTTSKQG 334
>sp|A6VHD2|RL3_METM7 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl3p PE=3 SV=1
Length = 334
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 196/369 (53%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKL------ 114
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
K +K D + A LEK T +RV+ HT K G+ +KK ++EI
Sbjct: 115 ----TLVKKEEKKTADA----LDAVLEK----ATEVRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G SVA+++ +A K + I VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R IG W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AY 325
Query: 363 IDTSSKFGH 371
I T SK G+
Sbjct: 326 ISTESKQGN 334
>sp|A6UQJ0|RL3_METVS 50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1
Length = 334
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 197/369 (53%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ ++E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKLT----- 115
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
TKK E + + A LEK +RV+ HT K G+ +KK ++EI
Sbjct: 116 --------VTKKEEIKT-VESLDAVLEK----TVDLRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
+V G SVA+K+ +A K + I+ VF+ E ID + VTKGKG++G V RWGV + +
Sbjct: 162 RVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R+ IG W P RV +TV AGQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR ++ + L E+ +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TY 325
Query: 363 IDTSSKFGH 371
I SK G+
Sbjct: 326 ISKESKQGN 334
>sp|Q9UWG2|RL3_METVA 50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3
SV=1
Length = 334
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 197/369 (53%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ ++E+ R+
Sbjct: 61 SPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKLT----- 115
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
TKK E + + A LEK +RV+ HT K G+ +KK ++EI
Sbjct: 116 --------VTKKEEIKT-VESLDAVLEK----TVDLRVIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
+V G SVA+K+ +A K + I+ VF+ E ID + VTKGKG++G V RWGV + +
Sbjct: 162 RVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R+ IG W P RV +TV AGQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR ++ + L E+ +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TY 325
Query: 363 IDTSSKFGH 371
I SK G+
Sbjct: 326 ISKESKQGN 334
>sp|Q6LX10|RL3_METMP 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl3p PE=3 SV=1
Length = 334
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 196/369 (53%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+
Sbjct: 61 SPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKLT----- 115
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
KK E KK + A L+ + + T +R + HT K G+ +KK ++EI
Sbjct: 116 --------LAKKEE----KKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G SVA+++ +A K + I VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R IG W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR S+ + L EI +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEI--AY 325
Query: 363 IDTSSKFGH 371
I T SK G+
Sbjct: 326 ISTESKQGN 334
>sp|Q9V1T5|RL3_PYRAB 50S ribosomal protein L3P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl3p PE=3 SV=1
Length = 361
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 202/370 (54%), Gaps = 18/370 (4%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWA------QHLNEEVRRRF 118
+ KE VTIIETPPL V G+ Y + GL + V +++++ + R
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKK 178
+ + K++ T K Y DD ++ + LE M K ++ V A + +KK
Sbjct: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
Query: 179 AHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
+ME + G SV +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
Query: 239 TRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 298
K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ +
Sbjct: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK----- 291
Query: 299 MTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 358
D E +ITP GGFPHYG+V D+++I G G KR++ +R ++ + ++
Sbjct: 292 -LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
Query: 359 KLKFIDTSSK 368
++ ++ SK
Sbjct: 351 QITYVSVESK 360
>sp|A9A9B8|RL3_METM6 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl3p PE=3 SV=1
Length = 334
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 195/369 (52%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL------ 114
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
K +K D + A LEK T +R + HT K G+ +KK ++EI
Sbjct: 115 ----TLVKKEEKKTADA----LDAVLEK----ATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G SVA+++ +A K + I VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R IG W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AY 325
Query: 363 IDTSSKFGH 371
I T SK G+
Sbjct: 326 ISTESKQGN 334
>sp|A4FVY2|RL3_METM5 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl3p PE=3 SV=1
Length = 334
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 195/369 (52%), Gaps = 40/369 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT++ETP + V G+ Y KT +GL++L VWA+ L+ ++ R+
Sbjct: 61 SPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL------ 114
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
K +K D + A +EK T +R + HT K G+ +KK ++EI
Sbjct: 115 ----TLAKKEEKKTADA----LDAVVEK----ATEVRAIVHTN-PKTTGIPKKKPEVVEI 161
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G SVA+++ +A K + I VF+ E+ID + +TKGKG++G V RWG+ + +
Sbjct: 162 RIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGK 221
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
+G+ R IG W P RV +TV GQ G+H RTE NK+I KLG E
Sbjct: 222 HQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE-------- 273
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF +YG V Y+++KG GP KR+V LR S+ + L E+ +
Sbjct: 274 ------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AY 325
Query: 363 IDTSSKFGH 371
I T SK G+
Sbjct: 326 ISTESKQGN 334
>sp|O59418|RL3_PYRHO 50S ribosomal protein L3P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl3p PE=3 SV=1
Length = 362
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 198/377 (52%), Gaps = 31/377 (8%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
+ KE VTIIETPPL V G+ Y + GL + V N+
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFE-------LDNYTP 111
Query: 125 SKKKAFTKYT-------------KKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKM 171
SKK K+T K Y ++ ++ + A LE M K ++ V A +
Sbjct: 112 SKKGKGRKFTFYQFLGRRIATLPKDYTQEEFEQKLGA-LEDMIKEGEIVEVRALVSTQPW 170
Query: 172 KGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEG 231
+KK +ME + G SV +K ++ K+I + V ++ E++D+I VTKGKG +G
Sbjct: 171 VIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQG 230
Query: 232 VVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 291
V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 231 PVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN 290
Query: 292 SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTS 351
+ D E +ITP GGFPHYG+V D+++I G G KR++ +R ++
Sbjct: 291 GK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKK 344
Query: 352 RLALEEIKLKFIDTSSK 368
+ ++ ++ ++ SK
Sbjct: 345 KPPVQRPQITYVSVESK 361
>sp|B6YSL3|RL3_THEON 50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1)
GN=rpl3p PE=3 SV=1
Length = 347
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 195/371 (52%), Gaps = 34/371 (9%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL + PRKRA +++ +PKD R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
KE VT++E PPL V G+ Y + GL + VW LN+ V+RR
Sbjct: 60 LT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI------ 112
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTV-----IRVLAHTQIRKMKGLKQKKA 179
K D ++ QA+L +++ +R+L HTQ +K +KK
Sbjct: 113 ----------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKP 160
Query: 180 HLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
+ME + G V K D+A K++ V + E++D+I VTKGKG +G V RWG+
Sbjct: 161 EVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIK 220
Query: 240 RLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHS 297
K R R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ +
Sbjct: 221 IQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE-----NG 275
Query: 298 AMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
+ ++ E +ITP GGFPHYG++ D+L+I+G G KR++ +R ++ + +E
Sbjct: 276 KLKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVER 335
Query: 358 IKLKFIDTSSK 368
++ +I SK
Sbjct: 336 PQITYISRESK 346
>sp|Q5JDJ0|RL3_PYRKO 50S ribosomal protein L3P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl3p PE=3 SV=1
Length = 346
Score = 215 bits (547), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 193/368 (52%), Gaps = 29/368 (7%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL + PRKRA +++++PKD R+ F GYKAGMTHI+ + PG
Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKDSE---VRMLGFAGYKAGMTHILMIDDSPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
KE VTI+E PPL V G+ Y + GL + VW L++ V RR
Sbjct: 60 LT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKN 118
Query: 125 SKKKAFTKYTKKYE--TDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLM 182
++AF + E +DG+ +R+L HTQ + GLK KK +M
Sbjct: 119 YNEEAFQAKLGQLEDLVNDGE-------------IADVRLLVHTQ-PWLIGLK-KKPEVM 163
Query: 183 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
E + G V K D+A K++ V + E++D+I VTKGKG +G V RWGV
Sbjct: 164 EYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQF 223
Query: 243 RKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ +
Sbjct: 224 HKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------L 277
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
D E +ITP GGFPHYG+V D+L+I+G G KR++ +R ++ + +E ++
Sbjct: 278 VLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQI 337
Query: 361 KFIDTSSK 368
++ SK
Sbjct: 338 TYVSRESK 345
>sp|C6A159|RL3_THESM 50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl3p PE=3 SV=1
Length = 359
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 131/374 (35%), Positives = 197/374 (52%), Gaps = 28/374 (7%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
+ PR GSL + PRKRA +++ +P++ + R+ F GYKAGMTH++ + PG
Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG 59
Query: 65 SKLHK-KETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWC 123
L K KE VTI+E PPL+V G+ Y + GL + V E N+
Sbjct: 60 --LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLE-------NYP 110
Query: 124 KSKKKAFTKY---------TKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGL 174
+ K T Y K T++ + +LE + K V+ + A +
Sbjct: 111 SKRAKNVTFYKLLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLAR 170
Query: 175 KQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVT 234
+KK +ME V G S+ +K ++ K+I + + Q+ E++DI+ VTKGKG +G V
Sbjct: 171 IKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVK 230
Query: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 294
RWGV K +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ +
Sbjct: 231 RWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKL 290
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLA 354
+ + + +ITP GGFPHYGVV D+++I G G KR++ +R ++ R
Sbjct: 291 T------LNGEKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPP 344
Query: 355 LEEIKLKFIDTSSK 368
E ++ +I SK
Sbjct: 345 AEAPQITYISRESK 358
>sp|O28354|RL3_ARCFU 50S ribosomal protein L3P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl3p PE=3 SV=1
Length = 331
Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 41/368 (11%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++
Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKN 58
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S + +E VT+IETPP+ V V Y KT G++ VW+ +L++ + RR N K
Sbjct: 59 SPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL--NLPK 116
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
+ D++ ++ + +RV+ +TQ + G+ +K +ME
Sbjct: 117 K-----------------EPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEH 159
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 244
++ GG+V + +D+A K+I + VF + +ID+I VTKGKG++G V RWGV L K
Sbjct: 160 RI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAK 218
Query: 245 THRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
R R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ +E
Sbjct: 219 HARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE-------- 270
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
ITP GGF HYGV+ Y+L+ G GP KR++ +R ++ + + + + + +
Sbjct: 271 ------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVY 322
Query: 363 IDTSSKFG 370
+ T+SK G
Sbjct: 323 VSTTSKQG 330
>sp|Q8TZZ8|RL3_PYRFU 50S ribosomal protein L3P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl3p PE=1 SV=1
Length = 365
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 199/377 (52%), Gaps = 28/377 (7%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSLGF PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHL---NEEVRRR---- 117
+ KE VTIIETPPL V G+ Y GL + V N + R
Sbjct: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 118 -----FYKNWCKSKKKAFTKYTKK-YETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKM 171
FYK + YT++ +E G QLE M K ++ V A +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLG------QLEDMIKEGEIVDVRAIVATQPW 172
Query: 172 KGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEG 231
+KK +ME + G SV +K ++ K++ + V ++ E++D+I VTKGKG +G
Sbjct: 173 VIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQG 232
Query: 232 VVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA 291
V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+
Sbjct: 233 PVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE- 291
Query: 292 SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTS 351
+ + + TE +ITP GGFPHYG+V D+++I G G KR++ +R ++
Sbjct: 292 ----NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKK 347
Query: 352 RLALEEIKLKFIDTSSK 368
+ ++ ++ ++ SK
Sbjct: 348 KPPVQRPQITYVSVESK 364
>sp|A5UL89|RL3_METS3 50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1
Length = 336
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 193/366 (52%), Gaps = 39/366 (10%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSK 66
PR GS+ F PRKRA++ ++K++P++D K L GYK GMTH +V D +K S
Sbjct: 6 QPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSP 61
Query: 67 LHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSK 126
+ + VT++E PP+VV+G+ Y KT RGL+ + V A +L+EE+ R+
Sbjct: 62 TNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------- 113
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQV 186
K+Y + IQ L+K + I+VL HT K+ + +KK + E +
Sbjct: 114 -----SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGI 163
Query: 187 NGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 246
G + +K++ A ++ + + + +D I TKGKG++GVV RWG+ K
Sbjct: 164 GGANPEEKLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAV 223
Query: 247 RG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDR 304
R R V IG W P+R +TVA+AGQ GYH RTE NKKI K+ A E D+
Sbjct: 224 RAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASAD--------EVDQ 275
Query: 305 TEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFID 364
I P GGF YG+V DY+L+KG GP KR+V LRQ + + +I +I
Sbjct: 276 ----INPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQI--NYIS 329
Query: 365 TSSKFG 370
T SK G
Sbjct: 330 TKSKQG 335
>sp|O26110|RL3_METTH 50S ribosomal protein L3P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl3p PE=3 SV=1
Length = 337
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 193/366 (52%), Gaps = 38/366 (10%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSK 66
PR GS+ F PRKRA+R +VK++P+ D+P L A GYKAGMTH++ + S
Sbjct: 6 QPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSP 61
Query: 67 LHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSK 126
E VTI+E PPL V+ V Y KT RGL++L V A +++RR+
Sbjct: 62 TEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRK--------- 112
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQV 186
T Y+ + + I++ +E Y +RV+ HT R + + +KK + E +
Sbjct: 113 ---LTPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGL 164
Query: 187 NGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 246
G + +K ++A K + +F + +D I VTKGKG++G V RWG+ K
Sbjct: 165 GGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAA 224
Query: 247 RGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDR 304
R R + +G W P+R +TV +AGQ GYH RTE NK+I K+G AS+
Sbjct: 225 RSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADL-------- 276
Query: 305 TEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFID 364
+ P GGF YG+V DY++IKG GP KR+V LR+++ + + E ++ +I
Sbjct: 277 ----VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYIS 330
Query: 365 TSSKFG 370
T+SK G
Sbjct: 331 TASKQG 336
>sp|Q3IMY8|RL3_NATPD 50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl3p PE=3 SV=1
Length = 336
Score = 211 bits (538), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 42/367 (11%)
Query: 9 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLH 68
PR GS+GF PR RA+ + ++P DD +P L F GYKAGM+H+V ++P S
Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQPG-LQGFAGYKAGMSHVVAINDEPNSPRE 64
Query: 69 KKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKK 128
+E VT++ETPP+ V V Y TP G R L VW ++E++ R
Sbjct: 65 GQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL---------- 114
Query: 129 AFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNG 188
+ ++ D + DI+ L+ + +RV+ HT + + +K+ +ME +V G
Sbjct: 115 ----SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGG 168
Query: 189 GSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 246
GS++ +VDFA + + + VF+ E D+ G+TKGKG +G V RWGV + K
Sbjct: 169 GSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHA 228
Query: 247 RG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDR 304
R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG
Sbjct: 229 RQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG--------------- 273
Query: 305 TEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLK-QTSRLALEEIKLKFI 363
+ D++P GGF +YG V+ Y L+KG GP KR+V R ++ RL E ++++
Sbjct: 274 -DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAVRPGDQPRLDPE---VRYV 329
Query: 364 DTSSKFG 370
T+S G
Sbjct: 330 STASNQG 336
>sp|Q2NFV6|RL3_METST 50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl3p PE=3 SV=1
Length = 337
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 196/370 (52%), Gaps = 46/370 (12%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKL 67
PR GS+ F PRKR +R +V +P+ D + L AF GYK GMTH+ + GS
Sbjct: 6 QPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPT 62
Query: 68 HKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQ-HLNEEVRRRFYKNWCKSK 126
E VTI+E PPLVV+G+ Y KT GL++L V A +L++E+ R+
Sbjct: 63 ENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI-------- 114
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKY---CTVIRVLAHTQIRKMKGLKQKKAHLME 183
+ K+ DI+A++E+++ IRVL HT+ K+ + +KK ++E
Sbjct: 115 --SVPKF----------DDIEAKIEELRNKIDDIDEIRVLIHTK-PKLTSVPKKKPEVLE 161
Query: 184 IQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLP 242
+ G SV K+++A K+I VFQ+ E D I TKGKG +G V R+GV +
Sbjct: 162 FGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYG 221
Query: 243 RKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTE 301
+ G+ R V IG W P R +TVA GQ GYH RTE NKK+ K+G
Sbjct: 222 KAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG------------ 269
Query: 302 FDRTEKD-ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
D +E D I P GGF YG V +Y+L+KG GP KR+V LR+ + + ++ EI
Sbjct: 270 -DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI-- 326
Query: 361 KFIDTSSKFG 370
+I T+SK G
Sbjct: 327 SYISTTSKQG 336
>sp|A6UV68|RL3_META3 50S ribosomal protein L3P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1
Length = 333
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 194/369 (52%), Gaps = 41/369 (11%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GSL F PRKRA R K++++P+ + +L AF YKAG TH + P
Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERET---VKLLAFPVYKAGTTHALYKENNPK 60
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S ++ VT++E P + + G+ Y K +GL++L VWA ++E+ R+
Sbjct: 61 SPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKIN---LP 117
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
+ KA T+ +L+++ +R + HT K L +KK ++EI
Sbjct: 118 KEPKANTE----------------KLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEI 160
Query: 185 QVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPR 243
++ G +++ + +A K++ I+ VF E ID + +TKGKG++G V RWG+ + +
Sbjct: 161 KIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGK 220
Query: 244 KTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
++G+ R IG W P R+ +TV AGQ G+H RTE NK+I K+G+ E
Sbjct: 221 HQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE-------- 272
Query: 303 DRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF 362
I P GGF +YGVV +Y+L+KG GP KR+V LR+++ + L E L +
Sbjct: 273 ------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTY 324
Query: 363 IDTSSKFGH 371
+ T SK G+
Sbjct: 325 VSTESKQGN 333
>sp|Q9YFM2|RL3_AERPE 50S ribosomal protein L3P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl3p PE=3
SV=1
Length = 344
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 203/378 (53%), Gaps = 43/378 (11%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
M RK PR GSLGF PRKRASR +VK +P+ D KP L AFLGY+AGMTH+
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTP-RGLRSLCTVWAQHLNE-EVRRRF 118
++PG KE VTI+ETPP+ V V Y P RG SL WAQ E E++RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKK 178
++TD K ++ +L+K + +R++A +Q + GL +KK
Sbjct: 120 -------------STLGSFDTDKMLKSLEERLDKAED----VRLIAASQPKLAGGLSKKK 162
Query: 179 AHLMEIQVNGGS-VAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 237
L+EI+V G S V + D+A I ++ VF++ +++D+I VTKGKG++GV+ RWG
Sbjct: 163 PDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWG 222
Query: 238 VTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKIYKLGKASQE 294
V LPR K +G R+ IGA R +F +AGQ G+H RTE NK+I +
Sbjct: 223 VKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMI------ 273
Query: 295 SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL--LKQTSR 352
D +TP GGF YGVV ++++ G G KR + +R ++ + +
Sbjct: 274 --------DDDGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLK 325
Query: 353 LALEEIKLKFIDTSSKFG 370
L + + ++ +I +SK G
Sbjct: 326 LGVRKPEITYISLASKQG 343
>sp|Q8ZW52|RL3_PYRAE 50S ribosomal protein L3P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl3p PE=3 SV=1
Length = 338
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 185/350 (52%), Gaps = 45/350 (12%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
K PR GS+G PRKRA+ +V+ +P+ + KP L F YKAGM H V ++P
Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPT 62
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRG--LRSLCTVWAQHLNEEVRRRFYKNW 122
S L+ KE +AVT+++ PPL V G Y P R++ VWA L
Sbjct: 63 SPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASEL------------ 110
Query: 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKA 179
K+ + T K D+ QL+K++++ V +R L TQ + G+ +K
Sbjct: 111 --------PKFLHRVLTLPEKLDVDKQLKKVEEFRDVAVDVRALVATQ-PHLSGIGKKTP 161
Query: 180 HLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
L+EI + G SV ++++FA K + VF +++D+I VTKGKGY+GV+ R+GV
Sbjct: 162 ELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGV 221
Query: 239 TRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESH 296
T LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G+ E
Sbjct: 222 TILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE-- 278
Query: 297 SAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 346
ITP GFPHYGVV Y+LI+G G +KR+V LR +
Sbjct: 279 ------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLRHPV 316
>sp|Q8TY90|RL3_METKA 50S ribosomal protein L3P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl3p PE=3 SV=1
Length = 361
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 184/338 (54%), Gaps = 39/338 (11%)
Query: 13 SLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKET 72
SL F PRKRASR +++++P ++ R+ F GYKAGMTH + + P S +E
Sbjct: 16 SLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEI 72
Query: 73 CEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTK 132
VTI++ PP+ V + Y TP G R + WA+ + EE+ + FT
Sbjct: 73 SVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE-IPEEL----------EMDRVFTV 121
Query: 133 YTKKYETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGS 190
DG+ ++E++ V IRV+ TQ +K G+ +KK +ME ++ G
Sbjct: 122 ------PKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKKA-GVPKKKPDVMEYRIGGKD 174
Query: 191 VAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL- 249
V ++ ++A ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R
Sbjct: 175 VRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQK 234
Query: 250 -RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKD 308
R + IG P+RV +TV AGQ GYH RTE NK+I K+G+ +E
Sbjct: 235 GRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE-------------- 280
Query: 309 ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 346
+TP GGF +YGVV DY++I G GPKKR++ +R ++
Sbjct: 281 VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
>sp|Q975I1|RL3_SULTO 50S ribosomal protein L3P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl3p PE=3 SV=1
Length = 343
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 200/377 (53%), Gaps = 41/377 (10%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
M HRK PR GS G PRKRAS +++P ++P +L F+GYK GM+HI
Sbjct: 1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMID 59
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
+KP S + KE V++IETPP++ + + YV P+G + T + ++E++ +
Sbjct: 60 DKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLI-- 117
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKD-IQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKA 179
+++ T+ E GK D I +L + +RVL TQ + + L +KK
Sbjct: 118 -----QQRKVTRLKIDKEKMKGKLDEINNKLNDI----LYLRVLIATQPKLVPSLGKKKP 168
Query: 180 HLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
++E+QV GG + ++++ K + + VF++ ++IDIIGVTKGKG++GVV R+GV
Sbjct: 169 EIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVV 228
Query: 240 RLPR--KTHRGLRKVACIGAWHPARVSFT----VARAGQNGYHHRTEMNKKIYKLGKASQ 293
LPR K +G RKV G SF+ V + GQ GYH RTE NK+I K+
Sbjct: 229 ELPRWHKHRKGSRKVGARGP------SFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPN 282
Query: 294 ESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRL 353
E I P GGF +YG+V YL+I+G +G KKR + LR + + S +
Sbjct: 283 E--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWI 326
Query: 354 ALEEIKLKFIDTSSKFG 370
K+ +++ S+ G
Sbjct: 327 PQSAPKITYVNLYSQQG 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,250,992
Number of Sequences: 539616
Number of extensions: 6331309
Number of successful extensions: 17096
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 16189
Number of HSP's gapped (non-prelim): 746
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)