Query 016469
Match_columns 389
No_of_seqs 182 out of 1257
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_B 60S ribosomal protein L 100.0 2E-150 5E-155 1118.9 37.5 385 1-389 1-385 (387)
2 3iz5_C 60S ribosomal protein L 100.0 1E-150 3E-155 1120.9 33.5 389 1-389 1-389 (389)
3 4a17_B RPL3, ribosomal protein 100.0 7E-149 2E-153 1108.3 34.2 383 1-389 1-383 (391)
4 2zkr_b 60S ribosomal protein L 100.0 3E-144 9E-149 1081.8 22.6 387 1-389 1-394 (403)
5 3j21_C 50S ribosomal protein L 100.0 6E-126 2E-130 937.0 30.2 354 1-369 1-365 (365)
6 1vq8_B 50S ribosomal protein L 100.0 3E-118 1E-122 882.0 31.0 330 4-370 2-338 (338)
7 2zjr_B 50S ribosomal protein L 100.0 7.5E-68 2.6E-72 494.2 17.9 201 44-350 2-206 (211)
8 2ftc_C L3MT, MRP-L3, mitochond 100.0 1.9E-66 6.4E-71 483.9 22.2 205 43-348 1-210 (211)
9 3r8s_D 50S ribosomal protein L 100.0 3.1E-66 1.1E-70 481.3 19.6 204 43-347 1-208 (209)
10 3bbo_F Ribosomal protein L3; l 100.0 2E-67 6.7E-72 503.4 3.8 208 42-349 42-253 (259)
11 3v2d_E 50S ribosomal protein L 100.0 2.5E-64 8.6E-69 467.6 20.2 201 43-349 1-205 (206)
No 1
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=1.6e-150 Score=1118.88 Aligned_cols=385 Identities=66% Similarity=1.124 Sum_probs=373.5
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (389)
Q Consensus 1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE 80 (389)
|||||||+||||||||+|||||++++|||||||+||++++|+|+||+|||||||||+++||||+|+++|+|+++||||||
T Consensus 1 mshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivE 80 (387)
T 3u5e_B 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVD 80 (387)
T ss_dssp -CCCSSCCCCSSCGGGCCCCCCSCSSCCCCCCCCCCTTSCCCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCccCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (389)
Q Consensus 81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 160 (389)
+|||+|+||++|.+||+|+++++||||++++++++||||+|||+|+++||++|++++.++. ++++.+|++|+++|++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~--~~~~~~~~~~~k~~~vi 158 (387)
T 3u5e_B 81 TPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDG--AGIERELARIKKYASVV 158 (387)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCTTTSCCCTTTTTGGGGSSSS--HHHHHHHHHHHHSCSEE
T ss_pred cCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcccchhhhhhhhhhcccccchh--HHHHHHHHHhhhcccEE
Confidence 9999999999999999999999999999999999999999999999999999998765322 67889999999999999
Q ss_pred EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469 161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240 (389)
Q Consensus 161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~ 240 (389)
|+|+||||++ .+|+|||+|||||||+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus 159 Rvi~hTqp~l-~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 237 (387)
T 3u5e_B 159 RVLVHTQIRK-TPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKK 237 (387)
T ss_dssp EEEEECCGGG-SSCSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred EEEEeccccc-cCccccCceeEEEEecCCCHHHHHHHHHhccCCEechHHhccCCCEEEEEEEEcCccceeeeeecccCC
Confidence 9999999997 589999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceee
Q 016469 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGV 320 (389)
Q Consensus 241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~ 320 (389)
+|+++|++||++||||+|||+|||+|++||||||||+||++||+||+||.+ .+.+||+||||+++++|||+|||+|||+
T Consensus 238 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~~~t~~d~t~k~ItP~GGF~hYG~ 316 (387)
T 3u5e_B 238 LPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG-DDEANGATSFDRTKKTITPMGGFVHYGE 316 (387)
T ss_dssp CCTTCTTCSSSCSCCCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEECCS-SCSCSSCCTTTCCCCCSCCTTCBTTTBC
T ss_pred CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-ccccccccccccccccccCCCCccccce
Confidence 999999999999999999999999999999999999999999999999998 6779999999999999999999999999
Q ss_pred eeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469 321 VNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389 (389)
Q Consensus 321 v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~ 389 (389)
|++||||||||||||++++|+||++++++.++.++++|+|+||||+||||||||||+|||++|||+||+
T Consensus 317 V~~~~ilvKGsVpG~kk~~v~lr~s~~~~~~~~~~e~~~lkfIdtsSK~Ghgrfqt~~ek~~f~g~lk~ 385 (387)
T 3u5e_B 317 IKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLKK 385 (387)
T ss_dssp CCSCEEEEESCCSSCTTCEEEEEECSSCCCCBTTBCCCCEEEECCSCTTTTCCCSSHHHHHHHHCCCSS
T ss_pred ecCCEEEEEecccCCCCcEEEEeecccCCcccccccCCcceEEEcccccCCCcCCCHHHHHhhcccccc
Confidence 999999999999999999999999999987778999999999999999999999999999999999996
No 2
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=9.9e-151 Score=1120.89 Aligned_cols=389 Identities=88% Similarity=1.402 Sum_probs=375.7
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (389)
Q Consensus 1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE 80 (389)
|||||||+||||||||+|||||++++|||||||+||++++|+|+||+|||||||||++++|||+|+++|+|+++||||||
T Consensus 1 MshrKf~~PR~GSLgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (389)
T 3iz5_C 1 MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE 80 (389)
T ss_dssp CCSCSSCCCCSSCSTTCCCCCCSSSSCCCSCCCCSCSSCTTCBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEe
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (389)
Q Consensus 81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 160 (389)
+|||+|+||++|.+||+|+++++||||+|++++++||||+||++|+++||++|+++++++.++++++++|+.|+++|++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~g~~~~~~~~~~~~k~~~vi 160 (389)
T 3iz5_C 81 TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV 160 (389)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTTTTTCSCCCSSCSCCCCCCSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhhcchhhhhhhhhhhhccccccchhhhHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999988764444567789999999999999
Q ss_pred EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469 161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240 (389)
Q Consensus 161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~ 240 (389)
|+|+||||+++++|+|||+|||||||+|+++++++|||...+|++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus 161 Rvi~hTqp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 240 (389)
T 3iz5_C 161 RVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR 240 (389)
T ss_dssp EEEEEECGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCC
T ss_pred EEEEecccccccCCccCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCC
Confidence 99999999985479999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceee
Q 016469 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGV 320 (389)
Q Consensus 241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~ 320 (389)
+|+++|++||++||||+|||+|||+|++||||||||+||++||+||+||.+..+.+||+||||+++++|||+|||+|||+
T Consensus 241 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~kI~kI~~~g~~~~~a~t~~d~t~k~ItP~GGF~hYG~ 320 (389)
T 3iz5_C 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGV 320 (389)
T ss_dssp CCSSCCSCSSCCSCSSCSSSSSCCTTSCCCEEEECCEEEEEEEECCEEEESSSSCCCSCSSSSCCCCCSSCTTCBTTTBC
T ss_pred CCccccCCCCCCcccCCCCCCcccCCCccCCCCCCcceeeeeeEEEEeCCccccccccccccccccccccCCCCccccce
Confidence 99999999999999999999999999999999999999999999999998424579999999999999999999999999
Q ss_pred eeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469 321 VNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389 (389)
Q Consensus 321 v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~ 389 (389)
|++||||||||||||++++|+||+++++++.+.++++|+|+||||+||||||||||+|||++|||+||+
T Consensus 321 V~~~~ilvKGsVpG~kk~~v~lr~s~~~~~~~~~~e~~~lkfIdtsSK~Ghgrfqt~~ek~~f~g~lk~ 389 (389)
T 3iz5_C 321 VKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYGRLKA 389 (389)
T ss_dssp CCSEEEEEESCCSSSSSCEEEEEECSCCSCCSSCCSCCCEEEECCCCCTTSCSTTHHHHHHHHTCCSCC
T ss_pred ecCCEEEEeccccCCCCcEEEEeecccCCCcccccccCceeEEeccccccCcccCCHHHHHhhcccccC
Confidence 999999999999999999999999999987778999999999999999999999999999999999995
No 3
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=6.7e-149 Score=1108.33 Aligned_cols=383 Identities=61% Similarity=1.089 Sum_probs=371.8
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (389)
Q Consensus 1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE 80 (389)
|||||||+||||||||+|||||++++|||||||+||++++|+|+||+|||||||||++++|||+|+++|+|+++||||||
T Consensus 1 mshRKf~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd~~~~~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivE 80 (391)
T 4a17_B 1 MSHRKFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIE 80 (391)
T ss_dssp -CCCSSCCCCSSCGGGCSCCCCSCSSCCCSSCCCCCSSSSCEECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCCcCccccccccCCCcccCCCCCCCCCceEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEe
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (389)
Q Consensus 81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 160 (389)
+|||+|+||++|.+|++|+++++||||+|++++++||||+||++|+++||++|.+++.+ ++++++|+.|+++|++|
T Consensus 81 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~knw~~skkkaftk~~kk~~~----~~~~~~~~~~~k~~~vi 156 (391)
T 4a17_B 81 CPPMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFYKNWANSNKKAFTHHEKNFDQ----KAQDLLLKRIEKYCSVV 156 (391)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGCSCSTTSCCCTTHHHHHTCCH----HHHHHHHHHHHHHCSEE
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhcccccccchhhhhhhhhhcch----hHHHHHHHHhhhcccEE
Confidence 99999999999999999999999999999999999999999999999999999887642 56788999999999999
Q ss_pred EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469 161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240 (389)
Q Consensus 161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~ 240 (389)
|+|+||||++ .+|+|||+|||||||+|+++++++|||...||++|+++|+|++||+|||+|+|||||||||||||||++
T Consensus 157 Rvi~hTqp~l-~~l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~ 235 (391)
T 4a17_B 157 RVIAHTNMSK-LNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKH 235 (391)
T ss_dssp EEEEEECGGG-SCSSCCCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCC
T ss_pred EEEEeccccc-cCcCCCCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEEEEEEEEeCcccceeeeecccCC
Confidence 9999999997 589999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceee
Q 016469 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGV 320 (389)
Q Consensus 241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~ 320 (389)
+|+++|++||++||||+|||+|||+|++||||||||+||++||+||+||.+ ++.+||+||||+++++|||+|||+|||+
T Consensus 236 ~p~ktH~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~~~~~a~t~~d~t~k~ItP~GGF~hYG~ 314 (391)
T 4a17_B 236 LQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKG-DDASNASTAGDVTDKAITPLGGFPHYGV 314 (391)
T ss_dssp CCTTCSSCSSSCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEECT-TCSSTTCCTTTCSCCCSSCTTCBTTTBC
T ss_pred CCcccccCCCCCcccCCCCCCcccCCCccCCCCCCceEEEeccEEEEEcCC-ccccccccccccccccccCCCcccccce
Confidence 999999999999999999999999999999999999999999999999998 6779999999999999999999999999
Q ss_pred eeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469 321 VNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389 (389)
Q Consensus 321 v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~ 389 (389)
|++||||||||||||++++|+||+++++++.+.++++|+|+||||+||||||||||+|||++|||+||+
T Consensus 315 V~~~~ilvKGsVpG~kk~~v~lr~s~~~~~~~~~~e~~~lkfIdtsSK~Ghg~fqt~~ek~~f~g~lkk 383 (391)
T 4a17_B 315 VKNDFIMIKGCCVGPKKRVLTLRKSIIPQTHGAAKEIINLKFIDTSSKIGHGRFQTVEEKDKFFGRDRT 383 (391)
T ss_dssp CCSCEEEEESCCSSSTTCEEEEEECSSCCCSHHHHCCCEEEEECCCCTTTTCCCSSHHHHHHHHTCCHH
T ss_pred ecCCEEEEeccccCCCCcEEEEeecccCCCchhccccCcceEEEccccccCcccCCHHHHHhhcCcccc
Confidence 999999999999999999999999999987778999999999999999999999999999999999985
No 4
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.8e-144 Score=1081.81 Aligned_cols=387 Identities=68% Similarity=1.166 Sum_probs=326.3
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (389)
Q Consensus 1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE 80 (389)
|||||||+||||||||+|||||++++|||||||+||.+++|+|+||+||||||||||+++|+|+|+++|+|+++||||||
T Consensus 1 MshRKf~~PR~GSlgf~PRKRa~~~~~rvrswP~dd~~~~~~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlE 80 (403)
T 2zkr_b 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVE 80 (403)
T ss_dssp ------CCCCSSCGGGCSCCCCSCSSCCCSCCCCSCSSCCBGGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEE
T ss_pred CCccccCCCCccccccCcccccccCCCCcccCCCcCCCCCceeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhcceeEE
Q 016469 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI 160 (389)
Q Consensus 81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i 160 (389)
+|||+|+|+++|.++++|+.++++||+++++++++||+|+||++++++|++.+.+++.++.+.+.++.+|+.++++|++|
T Consensus 81 tpP~~VvgvrGY~~~~~Gl~~~~~vwa~~ls~e~~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~i 160 (403)
T 2zkr_b 81 TPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI 160 (403)
T ss_dssp CCCBEEEEEEEEEEETTEEEEEEEEECSCCCGGGGCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCCEEEEEEeEEEecCCcccceEEeeccCChHHhhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999987654444567889999999999999
Q ss_pred EEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecceeeeEeeccCC
Q 016469 161 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240 (389)
Q Consensus 161 r~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~ 240 (389)
|+|+||||+++ +|+||++||+||||+++++++++|||...+|++|+|+|+|++||+|||+|+|||||||||||||||++
T Consensus 161 Rvi~hTq~~~~-~l~qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~ 239 (403)
T 2zkr_b 161 RVIAHTQMRLL-PLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239 (403)
T ss_dssp EEEEECCGGGS-SCSCCCCCCEEEEBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCC
T ss_pred EEEEEeccccc-ccccCCCEEEEEEecCcchhhhhhhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCC
Confidence 99999999996 79999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCccc-------CCcCcccccCCccccCCCC
Q 016469 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE-------SHSAMTEFDRTEKDITPMG 313 (389)
Q Consensus 241 ~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~-------~~~~~~~~d~~~~~i~p~G 313 (389)
+|++||++||++||||+|||+|||+|++||||||||+||++||+||+||.++ + .+||+||||+++++|||+|
T Consensus 240 ~p~ktH~~hR~~GsiG~~~P~RV~~g~~maGqmG~~~rT~~NlkI~rI~~~~-~~~~~k~~~~~~~t~~d~~~k~ItP~G 318 (403)
T 2zkr_b 240 LPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGY-LIKDGKLIKNNASTDYDLSDKSINPLG 318 (403)
T ss_dssp CCSSTTTTTTCCSCSSCSSSCSCCTTSCCCEEEECCEEEESCCCEEEEECCC-CCCSSCCCCCTTCCCCCCSSCSCCSCC
T ss_pred CCcccccccCCCcccCCCCCCeECCCCcCCCCCCcceEEecCCEEEEECCcc-ccccccccccccccccccccccccCCC
Confidence 9977999999999999999999999999999999999999999999999983 3 6899999999999999999
Q ss_pred CCcceeeeeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccCcCCCCChHHHhhhccccCC
Q 016469 314 GFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 389 (389)
Q Consensus 314 Gf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G~g~fq~~~ek~~~~~~~k~ 389 (389)
||+|||+|++||||||||||||++++|+||++++++.+++++++|+|+||||+||||||||||+|||++|||+||+
T Consensus 319 GF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~a~~~~~~~~~~e~~~l~~i~t~SK~Ghgrfqt~~ek~~~~g~~k~ 394 (403)
T 2zkr_b 319 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 394 (403)
T ss_dssp CBTTTBCCCSCEEEEESCCSSCTTCEEECCCCC-------------------------------------------
T ss_pred CcceeeeecCCEEEEEecccCCCCcEEEEeeccccCcccccccCCceEEEecccccCCCccccHHHHHhhcCcchh
Confidence 9999999999999999999999999999999999987778889999999999999999999999999999999986
No 5
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.1e-126 Score=937.03 Aligned_cols=354 Identities=38% Similarity=0.623 Sum_probs=324.1
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEE
Q 016469 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIE 80 (389)
Q Consensus 1 M~hrk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE 80 (389)
|+ +||+||||||||+|||||++++|||||||+|| +|+|+||+|||||||||+++||||+| ++|+|+++||||||
T Consensus 1 M~--~~~~PR~GSlgf~PrKRa~~~~~rvks~Pkdd---~~~L~~F~GYKAGMTHiv~~~drpgS-~~~kEv~~~VTivE 74 (365)
T 3j21_C 1 MG--KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPGL-TNGKEIFMPVTIIE 74 (365)
T ss_dssp CC--SCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC---SSEECCEEEEEEEEEEEEEESCSCSS-CSSSEEEEEEEEEE
T ss_pred CC--CCCCCCCCCCccCccccccccCCCccccCCCC---CceeeeeeeeccCCeEEEEEcCCCCC-cCCCEeeeeeEEEe
Confidence 66 89999999999999999999999999999997 89999999999999999999999999 99999999999999
Q ss_pred eCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchh-cccc--------ccccccccccchhHHHHHHH
Q 016469 81 TPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKK-KAFT--------KYTKKYETDDGKKDIQAQLE 151 (389)
Q Consensus 81 ~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~-~a~~--------~~~k~~~~~~~~~~~~~~~~ 151 (389)
||||+|+||++|.+|++|+++++||||+|+++++.+++| ||.++++ +||. +|+|++++ .++++++++|+
T Consensus 75 tPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y-~~~~~k~~~~~~~e~~Rr~~~~~k~~~~-~~~~~~~~~~~ 152 (365)
T 3j21_C 75 TPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKE-RKGKPKPKMTFYKLLERRIATLPKNYTQ-EMFEQKLGQLE 152 (365)
T ss_dssp CCCEEEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCC-SSSCCCCCCCSCSHHHHSSCCCCSCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEEEEEeecCCCceeEEEEccccccchhhcccc-ccccccccccchhhhhhhhhcccccccc-cchhhHHHHHH
Confidence 999999999999999999999999999999966666655 4444432 3322 34554322 22245788999
Q ss_pred Hhhc--ceeEEEEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccccceecccccccCCceEEEEEEeeeecc
Q 016469 152 KMKK--YCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGY 229 (389)
Q Consensus 152 ~~~~--~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG~~i~v~~vF~~G~~VDV~gvTKGKGF 229 (389)
.|++ +|++||+|+||||++ .+| |||+|||||||+|+++++++|||...+|++|+++|+|++||+|||+|+||||||
T Consensus 153 ~~~k~~~~~~iRvi~hTqp~~-~~l-qKK~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ge~VDV~GvTKGKGF 230 (365)
T 3j21_C 153 DMIKEGEIVDVRAIVATQPWV-IKL-KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGT 230 (365)
T ss_dssp HHHTCTTEEEEEEEEEECCSS-CSS-CCSCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCTTCEEEEEEECCCCEE
T ss_pred HhhccCcceEEEEEEeccccc-ccc-ccCccEEEEEecCCCHHHHHHHHHhhcCcEEechhccCCCCEEEEEEEeecccc
Confidence 9988 999999999999997 589 999999999999999999999999999999999889999999999999999999
Q ss_pred eeeeEeeccCCCCCCCcCCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCcccc
Q 016469 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDI 309 (389)
Q Consensus 230 qGvvKRwgf~~~p~kth~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i 309 (389)
|||||||||+++|+++|.+||++||||+|+|+|||+|++||||||||+||++||+||+||.+ + ..++||+|+++|
T Consensus 231 qGvvKRwgf~~~p~~hg~~hR~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~NlkI~kI~~~-~----~~~~~d~t~k~I 305 (365)
T 3j21_C 231 QGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN-G----KLKLDENTEIEI 305 (365)
T ss_dssp ECHHHHHCCCCCSSCCSSCSSCCCCSCCSSSCSCCSSSCCCEEESSCEEEEEEEEEEEEEEE-S----SCCSSSSSCSCC
T ss_pred ccceeeccCCCCCCCCCCCCCCCcccCCCCCCcccCCCccCCccCcceeEecCCEEEEEcCC-C----Cccccccccccc
Confidence 99999999999996666689999999999999999999999999999999999999999987 3 246899999999
Q ss_pred CCCCCCcceeeeeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEeccccc
Q 016469 310 TPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKF 369 (389)
Q Consensus 310 ~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~ 369 (389)
||+|||+|||+|++||||||||||||++++|+||+|+++..++..+++|+|+||||+|||
T Consensus 306 tP~GGF~hYG~V~~~~ilvKGsVPG~kk~~v~lr~a~~~~~~~~~~~~~~l~~Idt~SKq 365 (365)
T 3j21_C 306 TPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESKQ 365 (365)
T ss_dssp CCTTCBTTBCCCCEEEEEEESCCSSCTTCEEEEEECSSCCSSSCCCSSCEEEEECCSCCC
T ss_pred ccCCCceeeeeecCCEEEEEecCcCCCCcEEEEeeccccccchhhccCCceEEEECCcCC
Confidence 999999999999999999999999999999999999999876677799999999999998
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=2.9e-118 Score=882.04 Aligned_cols=330 Identities=35% Similarity=0.628 Sum_probs=306.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCccccCCCCCCCCCceEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCC
Q 016469 4 RKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP 83 (389)
Q Consensus 4 rk~~~PR~GSl~f~PrKRa~~~~~rirswP~~~~~~~~~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP 83 (389)
|||||||||||||+|||||++++|||||||+|| ++|+++||||||+||||||++||+|+|+++|+|+++||||||+||
T Consensus 2 ~k~~~PR~Gsl~f~PrkRa~~~~~rv~s~P~~~--~~~~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p 79 (338)
T 1vq8_B 2 PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDD--GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPP 79 (338)
T ss_dssp CCCCCCCSSCSSSCSCCCCSCSSCCCSCCCCCC--SSCEECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCC
T ss_pred CCCCCCCCCcCccCccccccccCCCcccCCCCC--CCceEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCC
Confidence 799999999999999999999999999999998 689999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccccchhccccccccccccccchhHHHHHHHHhhc--ceeEEE
Q 016469 84 LVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKK--YCTVIR 161 (389)
Q Consensus 84 ~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~ir 161 (389)
|+|+|+++|++|+|+++...++|++++++++.+++++++ ..+ .++..++|+.+++ +|++||
T Consensus 80 ~~V~~vk~~~~dgy~lq~~~~v~a~~~~~~~~r~~~kp~-------------~~~----~~~~~~~~~~~~~~~~~~~ir 142 (338)
T 1vq8_B 80 MRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE-------------DHD----PDAAEEQIRDAHEAGDLGDLR 142 (338)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS-------------SCC----HHHHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEEeeeccCceeEeeeeEeccccchhhcccccccc-------------ccc----chhhHHHHHhhhcccceeEEE
Confidence 999999999999999777789999999988877665321 111 1455677877765 999999
Q ss_pred EEEeehhhhhcCccccCceEEEEEeCCCccccccccccccc--cceecccccccCCceEEEEEEeeeecceeeeEeeccC
Q 016469 162 VLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFF--EKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239 (389)
Q Consensus 162 ~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~l--G~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~ 239 (389)
+|+||||++++|+++|+++|+||+|+++++++++|||..+| |++|+++|+|++||+|||+|+|||||||||||||||+
T Consensus 143 ~i~~tqp~k~agv~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF~~Gq~VDV~gvTKGKGFqGv~KRwgf~ 222 (338)
T 1vq8_B 143 LITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQ 222 (338)
T ss_dssp EEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTTCEEEEEEECCCCCEECHHHHHCCC
T ss_pred EEEEeccccccCCCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcccCCCceeeEEEEeCCCceeeeeecCCC
Confidence 99999999866898779999999999999999999998888 9999998899999999999999999999999999999
Q ss_pred CCCCCCc---CCCCCCCccCCCCCCCccCCCCCCCCCCCceeeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCc
Q 016469 240 RLPRKTH---RGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFP 316 (389)
Q Consensus 240 ~~p~kth---~~~R~~GsiG~~~P~rV~~g~~maGqmG~~~rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~ 316 (389)
++| ++| ++||++||||+|+|+|||+|++||||||||+||++||+||+||++ ++|||+|||+
T Consensus 223 ~~p-~sHG~sk~hR~~GsiG~~~P~RV~~g~kmaGqmG~~~rT~~Nl~I~kId~e---------------~~i~p~GGf~ 286 (338)
T 1vq8_B 223 KRK-GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG---------------DEPTVDGGFV 286 (338)
T ss_dssp CCC-GGGGSSSCSSCCSCSCCSSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEE---------------SSSCCTTCBT
T ss_pred CCC-cccCCCccCCCCcccCCCCCCeeccCCcCCCCcCCceEEEeccEEEEcCCC---------------CccccCCCcc
Confidence 999 555 469999999999999999999999999999999999999999976 6899999999
Q ss_pred ceeeeeccEEEEeecccCCCCCEEEEEecccccchhhhccccceeEEecccccC
Q 016469 317 HYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 370 (389)
Q Consensus 317 ~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~~~~~~~~~~i~~ist~Sk~G 370 (389)
|||+|++||||||||||||++++|+||+|++++ + .+.++|+|+||||+||||
T Consensus 287 ~YG~v~~~~ilvKGsVPG~k~~~V~ir~avk~~-~-~~~~~~~~~~i~t~sk~G 338 (338)
T 1vq8_B 287 NYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPN-D-QPRLDPEVRYVSNESNQG 338 (338)
T ss_dssp TTBCCCEEEEEEESCCSSCTTCEEEEEECSSCS-S-CCCCSCCEEEECCCCSCC
T ss_pred ccccccCCEEEEEccCcCCCCcEEEEeehhccc-c-ccccCCcceEEecccccC
Confidence 999999999999999999999999999999987 3 477899999999999998
No 7
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=7.5e-68 Score=494.19 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=177.0
Q ss_pred eEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhcccc
Q 016469 44 TAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWC 123 (389)
Q Consensus 44 ~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~~ 123 (389)
+||||||+||||||++ |+++||||||+|||+|+++++|++|+|++.+++ |.+ +. .
T Consensus 2 ~g~lg~K~GMT~i~~~-----------g~~~pVTVie~~p~~V~~~kt~~~dgy~avqvg--~~~-~~-------~---- 56 (211)
T 2zjr_B 2 KGILGTKIGMTQIWKN-----------DRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIG--YAP-KA-------E---- 56 (211)
T ss_dssp CEEEEEEEEEEEEEET-----------TEEEEEEEEECCCEEEEEEECTTTTSSCEEEEE--CSC-CC-------G----
T ss_pred eeEeEEecCcEeEEeC-----------CCEEEEEEEEeCCcEEEEEeceecCCCcEEEEE--EEE-ec-------c----
Confidence 6999999999999986 689999999999999999999999999887776 331 10 0
Q ss_pred cchhccccccccccccccchhHHHHHHHHhhcceeEEEEEEeehhhhhcCccccCceEEEEEeCCCcccccccccccccc
Q 016469 124 KSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFE 203 (389)
Q Consensus 124 ~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~lG 203 (389)
..++ ++..++| ++ +|++ ++++|+||+|++ ++|
T Consensus 57 -------~~~t---------kp~~g~~------------------~k-agv~-~k~~l~Efrv~~------------~~G 88 (211)
T 2zjr_B 57 -------RKVN---------KPMQGHF------------------AK-AGVA-PTRILREFRGFA------------PDG 88 (211)
T ss_dssp -------GGCC---------HHHHHHH------------------HT-TTCC-CCSCEEEETTCC------------CSS
T ss_pred -------cccC---------hhhhhhH------------------HH-cCCC-CCcEEEEEEcCC------------cCC
Confidence 0122 2334555 35 4897 899999999853 599
Q ss_pred ceecccccccCCceEEEEEEeeeecceeeeEeeccCCCCCCCcC---CCCCCCccCC-CCCCCccCCCCCCCCCCCceee
Q 016469 204 KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHRT 279 (389)
Q Consensus 204 ~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~~p~kth~---~~R~~GsiG~-~~P~rV~~g~~maGqmG~~~rT 279 (389)
++|++ |+|++||+|||+|+||||||||+||||||+++| ++|+ +||++||||+ |+|+|||+|++||||||||++|
T Consensus 89 ~~i~v-~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~~PgRV~kgkkmaG~mG~~~~T 166 (211)
T 2zjr_B 89 DSVNV-DIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGP-ASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVT 166 (211)
T ss_dssp EECST-TTSCTTCEEEEEEECCEEEEECHHHHHCCCCCC-SSSSCSSCSCSCCCCCCSSTTCSCCTTCCCCEEEECCEEE
T ss_pred CEeEh-hhhcCCCceEEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCccEe
Confidence 99999 799999999999999999999999999999999 6765 5999999996 8999999999999999999999
Q ss_pred eeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceeeeeccEEEEeecccCCCCCEEEEEecccccc
Q 016469 280 EMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQT 350 (389)
Q Consensus 280 ~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~~ 350 (389)
++||+|++||++ +||||||||||||++++|+||++++++.
T Consensus 167 ~~Nl~I~~id~e-------------------------------~nlilvKGsVPG~~~~~v~ir~a~k~~~ 206 (211)
T 2zjr_B 167 VQNLEVVEIRAG-------------------------------ENLILVKGAIPGANGGLVVLRSAAKASA 206 (211)
T ss_dssp EEEEEEEEEETT-------------------------------TTEEEEESCCSSCTTCEEEEEBCSSCC-
T ss_pred EeccEEEEEcCC-------------------------------CCEEEEEecCcCCCCcEEEEEecccccc
Confidence 999999999998 9999999999999999999999998663
No 8
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.9e-66 Score=483.94 Aligned_cols=205 Identities=21% Similarity=0.293 Sum_probs=181.1
Q ss_pred EeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCeEEEEEEeEE--ecCCCceeeeEEecccCcHHHHhhhhc
Q 016469 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYV--KTPRGLRSLCTVWAQHLNEEVRRRFYK 120 (389)
Q Consensus 43 l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~~Vv~ir~y~--~~~~g~~~~~~v~a~~i~~~~~rr~~k 120 (389)
++|+||+|+|||+||+++ |..+||||||+.||+|+++++.+ .|+|.+.+++- .+.. .
T Consensus 1 R~Gllg~KiGMt~if~~~----------G~~ipvTVl~~~~~~V~q~kt~e~~~dGY~Avqvg~---~~~~-------~- 59 (211)
T 2ftc_C 1 RVGLIALKLGMMPLWTKD----------GQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGG---KTVS-------R- 59 (211)
T ss_pred CceEEEEEcceEEEECCC----------CcEEEEEEEEEcCCEEEEEEccccCCCCEEEEEEee---eecc-------c-
Confidence 479999999999999998 99999999999999999999999 68887777662 1111 0
Q ss_pred ccccchhccccccccccccccchhHHHHHHHHhhcceeEEEEEEeehhhhhcCccccCceEEEEEeCCCccccccccccc
Q 016469 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYG 200 (389)
Q Consensus 121 ~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~ 200 (389)
++++ +++.++| ++ +|++ ++++|+||+++++ +.+
T Consensus 60 ----------~~~~---------kp~~Ghf------------------~k-agv~-pkr~l~Efrv~~~--------~~~ 92 (211)
T 2ftc_C 60 ----------FRKA---------TSILEFY------------------RE-LGLP-PKQTVKIFNITDN--------AAI 92 (211)
T ss_pred ----------ccCC---------hhHhhhH------------------HH-cCCC-cccEEEEEEeCCC--------Ccc
Confidence 1123 2345565 45 5896 8999999999864 567
Q ss_pred cccceecccccccCCceEEEEEEeeeecceeeeEeeccCCCCCCCcC---CCCCCCccCCCCCCCccCCCCCCCCCCCce
Q 016469 201 FFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGAWHPARVSFTVARAGQNGYHH 277 (389)
Q Consensus 201 ~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~~p~kth~---~~R~~GsiG~~~P~rV~~g~~maGqmG~~~ 277 (389)
++|++|++ |+|++||+|||+|+||||||||+||||||+++| ++|+ +||++||||+|+|+|||+|++|||||||++
T Consensus 93 ~~G~~l~v-~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GSiG~~~PgRV~kgkkmaG~mG~~~ 170 (211)
T 2ftc_C 93 KPGTPLYA-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQP-ATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIY 170 (211)
T ss_pred ccCCEEEh-HhccCCceEEEEEEEcCCcceeceeecCCCCCC-cccCCCCCCCCCcccCCCCCCeecCCcccCCCCCCee
Confidence 89999999 799999999999999999999999999999999 6775 599999999999999999999999999999
Q ss_pred eeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceeeeeccEEEEeecccCCCCCEEEEEecccc
Q 016469 278 RTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLK 348 (389)
Q Consensus 278 rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~ 348 (389)
+|++||+|++||++ +||||||||||||++++|+||+|+++
T Consensus 171 ~T~~Nl~I~~id~e-------------------------------~nlilvKGsVPG~k~~~v~ir~a~~~ 210 (211)
T 2ftc_C 171 RTEYGLKVWRINTK-------------------------------HNIIYVNGSVPGHKNCLVKVKDSKLP 210 (211)
T ss_pred EEEeccEEEEECCC-------------------------------CCEEEEEecCcCCCCCEEEEEecccC
Confidence 99999999999998 99999999999999999999999886
No 9
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=3.1e-66 Score=481.29 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=182.2
Q ss_pred EeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhccc
Q 016469 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNW 122 (389)
Q Consensus 43 l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~ 122 (389)
+.|+||.|+|||+||+++ |..+||||||+.||+|+++++.++|+|.+.+++- .+.. .
T Consensus 1 m~Glig~KiGMt~if~~~----------G~~ipvTVl~~~~~~V~q~kt~e~dGY~Avqvg~---g~~~-------~--- 57 (209)
T 3r8s_D 1 MIGLVGKKVGMTRIFTED----------GVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTT---GAKK-------A--- 57 (209)
T ss_dssp CCCEEEEEEEEEEEECTT----------CCEEEEEEEECCCEEEEEEECHHHHSSCEEEEEE---SCCC-------G---
T ss_pred CcEEEEEEeceeEEECCC----------CcEEEEEEEEecCCEEEEEEccCCCCeEEEEEEE---eecC-------c---
Confidence 469999999999999998 9999999999999999999999999998877761 1111 0
Q ss_pred ccchhccccccccccccccchhHHHHHHHHhhcceeEEEEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccc
Q 016469 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFF 202 (389)
Q Consensus 123 ~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~l 202 (389)
++++ +++.++| ++ +|++ ++++|.||++.+. +.+++
T Consensus 58 --------~~~~---------Kp~~Ghf------------------~k-agv~-pkr~l~Efrv~~~--------~~~~~ 92 (209)
T 3r8s_D 58 --------NRVT---------KPEAGHF------------------AK-AGVE-AGRGLWEFRLAEG--------EEFTV 92 (209)
T ss_dssp --------GGSC---------HHHHHHH------------------HH-HTCC-CCSEEEEEECCTT--------CCCCT
T ss_pred --------ccCC---------HHHhhHH------------------HH-cCCC-CCeEEEEEecCCc--------ccCCC
Confidence 1123 3445666 45 5896 8999999999653 56789
Q ss_pred cceecccccccCCceEEEEEEeeeecceeeeEeeccCCCCCCCcC---CCCCCCccCC-CCCCCccCCCCCCCCCCCcee
Q 016469 203 EKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHR 278 (389)
Q Consensus 203 G~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~~p~kth~---~~R~~GsiG~-~~P~rV~~g~~maGqmG~~~r 278 (389)
|++|++ |+|++||+|||+|+||||||||+||||||+++| +||+ .||++||||+ |+|+|||+|++||||||||++
T Consensus 93 G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~sHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 170 (209)
T 3r8s_D 93 GQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQD-ATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERV 170 (209)
T ss_dssp TCEECG-GGGGSCCEEEEEEECCCCCEECHHHHHCCCCCC-SSTTCCSCSSSCCCCCCBTTBCSCCTTCCCSEECSSSEE
T ss_pred CCEEEe-eeEcCCCEEEEEEEEeccccceeeeEcCCCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 999999 799999999999999999999999999999999 8997 6999999999 999999999999999999999
Q ss_pred eeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceeeeeccEEEEeecccCCCCCEEEEEeccc
Q 016469 279 TEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLL 347 (389)
Q Consensus 279 T~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~ 347 (389)
|++||+|++||.+ +||||||||||||++++|+||+|++
T Consensus 171 T~~Nl~I~kid~e-------------------------------~nlilvKGsVPG~k~~~v~ir~avk 208 (209)
T 3r8s_D 171 TVQSLDVVRVDAE-------------------------------RNLLLVKGAVPGATGSDLIVKPAVK 208 (209)
T ss_dssp EEEEEEEEEEEGG-------------------------------GTEEEEESCCSSCTTCEEEEEECSC
T ss_pred EEecCEEEEEcCC-------------------------------CCEEEEEecCcCCCCCEEEEEeccc
Confidence 9999999999998 9999999999999999999999986
No 10
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2e-67 Score=503.42 Aligned_cols=208 Identities=22% Similarity=0.311 Sum_probs=130.9
Q ss_pred eEeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCeEE-EEEEeEEecCCCceeeeEEecccCcHHHHhhhhc
Q 016469 42 RLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVV-VGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120 (389)
Q Consensus 42 ~l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~~V-v~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k 120 (389)
+++||||||+||||||++| |.++||||||+|||+| +++++ .+++|+.+++..|++...
T Consensus 42 ~~~G~lG~K~GMT~if~e~----------G~~vPVTVle~~p~~Vv~q~kt--~e~dGy~Avqvg~~~~k~--------- 100 (259)
T 3bbo_F 42 AGVGVMATKLGMMSFFEES----------GTVVPVTVVGFREGNIVTQIKT--EATDGYNAVQVGYRRVRD--------- 100 (259)
T ss_dssp ---------------------------------------------------------------------CC---------
T ss_pred ceeEEEEEecCcEEEEccC----------CeEEEEEEEEECCCEEEEEEee--cCCCCcEEEEEEEeeech---------
Confidence 7899999999999999998 8999999999999999 55554 445566777766764321
Q ss_pred ccccchhccccccccccccccchhHHHHHHHHhhcceeEEEEEEeehhhhhcCccccCceEEEEEeCCCccccccccccc
Q 016469 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYG 200 (389)
Q Consensus 121 ~~~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~ 200 (389)
..++| +..++| ++ +|+. ++++|+||+|++. +.+
T Consensus 101 ----------k~~tK---------p~~Ghf------------------~k-agv~-~kr~l~Efrv~~~--------~~~ 133 (259)
T 3bbo_F 101 ----------RKLTK---------PEMGHL------------------EK-SGII-PLRHLQEFRLQSI--------DGF 133 (259)
T ss_dssp ----------SSCCH---------HHHTTC------------------SS-CCCC-CSSCCCCCCSCCC--------CTT
T ss_pred ----------hhCCh---------hhhhhH------------------HH-cCCC-CCcEEEEEecCCh--------hhc
Confidence 01222 222333 35 4784 8999999999742 346
Q ss_pred cccceecccccccCCceEEEEEEeeeecceeeeEeeccCCCCCCCc--CCCCCCCccCCC-CCCCccCCCCCCCCCCCce
Q 016469 201 FFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAW-HPARVSFTVARAGQNGYHH 277 (389)
Q Consensus 201 ~lG~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~~p~kth--~~~R~~GsiG~~-~P~rV~~g~~maGqmG~~~ 277 (389)
++|++|+++++|++||+|||+|+|||||||||||||||+++| ++| +.||++||||+| +|+|||+|++||||||||+
T Consensus 134 ~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p-~sHGsk~hR~~GSiG~~~~PgRV~kGkkMaGqmG~~~ 212 (259)
T 3bbo_F 134 EVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQ-MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTK 212 (259)
T ss_dssp TTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCC-SSSCSSTTTSCCCCSCSSCCTTTTTTSCCCCCCCCCB
T ss_pred ccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCC-CcCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCce
Confidence 899999997669999999999999999999999999999999 677 469999999997 9999999999999999999
Q ss_pred eeeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceeeeeccEEEEeecccCCCCCEEEEEeccccc
Q 016469 278 RTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQ 349 (389)
Q Consensus 278 rT~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~ 349 (389)
||++||+|++||++ +||||||||||||++++|+||+++++.
T Consensus 213 ~T~~Nl~IvrId~e-------------------------------~nlilVKGsVPG~k~~~V~ir~avk~~ 253 (259)
T 3bbo_F 213 RKIRKLKIVKIDDQ-------------------------------LNIIMIKGALPGKPGNLLRIAPAKIVG 253 (259)
T ss_dssp CCCCCCCEEEEETT-------------------------------TTEEEECSCCSSCSSSCCCCCCCCCC-
T ss_pred EEEeccEEEEECCC-------------------------------CCEEEEEecCcCCCCCEEEEEeccccC
Confidence 99999999999999 999999999999999999999999865
No 11
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=2.5e-64 Score=467.63 Aligned_cols=201 Identities=28% Similarity=0.411 Sum_probs=177.9
Q ss_pred EeEeeeeeecceEEEeeccCCCCccCCCceEEEEEEEEeCCeEEEEEEeEEecCCCceeeeEEecccCcHHHHhhhhccc
Q 016469 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNW 122 (389)
Q Consensus 43 l~gfiGyK~GMThi~~~dd~~~S~~~g~gv~~PVTVlE~pP~~Vv~ir~y~~~~~g~~~~~~v~a~~i~~~~~rr~~k~~ 122 (389)
+.|+||.|+|||+||++ |..+||||||+.||+|+++++.++|+|.+.+++-- +.. .
T Consensus 1 m~Gllg~KiGMt~if~~-----------G~~ipvTVi~~~~~~V~q~kt~e~dGY~Avqvg~~---~~~-------~--- 56 (206)
T 3v2d_E 1 MKGILGVKVGMTRIFRD-----------DRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFL---PQN-------P--- 56 (206)
T ss_dssp CCEEEEEEEEEEEEESS-----------SCEEEEEEEECCCEEEEEEECHHHHSSCEEEEEEE---ECC-------G---
T ss_pred CceEEEEEccceeEEcC-----------CCEEEEEEEEecCCEEEEEEccCcCCeEEEEEEec---cCC-------c---
Confidence 46999999999999986 57999999999999999999999999988777621 111 0
Q ss_pred ccchhccccccccccccccchhHHHHHHHHhhcceeEEEEEEeehhhhhcCccccCceEEEEEeCCCccccccccccccc
Q 016469 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFF 202 (389)
Q Consensus 123 ~~~~~~a~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ir~i~htqp~k~~gv~kkk~~l~E~~v~g~~~~~~~~~a~~~l 202 (389)
++++ +++.++| ++ +|++ ++++|.||++.+ ++
T Consensus 57 --------~~~~---------kp~~Ghf------------------~k-agv~-pkr~l~Efrv~~------------~~ 87 (206)
T 3v2d_E 57 --------KRVN---------RPLKGHF------------------AK-AGVE-PVRILREIRDFN------------PE 87 (206)
T ss_dssp --------GGCC---------HHHHHHH------------------HT-TCCC-CEEEEEEEETCC------------CS
T ss_pred --------cCCC---------HHHhhhH------------------HH-cCCC-cCeEEEEEECCC------------CC
Confidence 1123 3456666 35 5897 899999999842 59
Q ss_pred cceecccccccCCceEEEEEEeeeecceeeeEeeccCCCCCCCcC---CCCCCCccCC-CCCCCccCCCCCCCCCCCcee
Q 016469 203 EKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSFTVARAGQNGYHHR 278 (389)
Q Consensus 203 G~~i~v~~vF~~G~~VDV~gvTKGKGFqGvvKRwgf~~~p~kth~---~~R~~GsiG~-~~P~rV~~g~~maGqmG~~~r 278 (389)
|++|++ |+|++||+|||+|+||||||||+||||||+++| +||+ .||++||||+ |+|+|||+|++||||||||++
T Consensus 88 G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p-~tHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 165 (206)
T 3v2d_E 88 GDTVTV-EIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGP-DSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERV 165 (206)
T ss_dssp SSEECG-GGCCTTCEEEEEEECCCCCEECHHHHSCCCCCC-SSTTCCSCTTCCCCCCCBTTBCSCCTTCCCCEECSSSEE
T ss_pred CCEEEe-eeecCCCEEEEEEEEeccccceeeeEcccCCCC-cccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 999999 799999999999999999999999999999999 8997 6999999999 999999999999999999999
Q ss_pred eeeeeEEEEEcCCcccCCcCcccccCCccccCCCCCCcceeeeeccEEEEeecccCCCCCEEEEEeccccc
Q 016469 279 TEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQ 349 (389)
Q Consensus 279 T~~N~~I~kI~~~~~~~~~~~~~~d~~~~~i~p~GGf~~YG~v~~~~i~vKGsVPG~~k~~v~ir~a~~~~ 349 (389)
|++||+|++||.+ +||||||||||||++++|+||+|++..
T Consensus 166 T~~Nl~I~kid~e-------------------------------~nlilvKGsVPG~k~~~v~ir~a~k~~ 205 (206)
T 3v2d_E 166 TVMNLEVVDVIPE-------------------------------ENLLLVKGAVPGPNGGLVIVRETKKAA 205 (206)
T ss_dssp EEEEEEEEEEETT-------------------------------TTEEEEESCCSSCTTCEEEEEECCCC-
T ss_pred EEeccEEEEEcCC-------------------------------CCEEEEEecCcCCCCCEEEEeeccccC
Confidence 9999999999998 999999999999999999999998753
Done!