RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016469
(389 letters)
>gnl|CDD|240267 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional.
Length = 390
Score = 682 bits (1761), Expect = 0.0
Identities = 285/388 (73%), Positives = 334/388 (86%), Gaps = 5/388 (1%)
Query: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDV 60
MSHRKFEHPRHGSLGFLPRKR RHRG++++FPKDDP++P LTAF+GYKAGMTHIVRDV
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRCRRHRGRIRSFPKDDPTQPPHLTAFMGYKAGMTHIVRDV 60
Query: 61 EKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYK 120
++PGSKLHKKE EAVTIIE PP+VVVG+VGY +TPRGLR+L TVWA HL++E RRRFYK
Sbjct: 61 DRPGSKLHKKEVVEAVTIIEAPPMVVVGIVGYRETPRGLRALTTVWAHHLSDEFRRRFYK 120
Query: 121 NWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAH 180
NW KSKKKAFTKY K T KK + L+++KKYC+VIRV+AHTQ K+ L QKKAH
Sbjct: 121 NWYKSKKKAFTKYKKFAAT---KKAEERTLKRIKKYCSVIRVIAHTQPSKLP-LGQKKAH 176
Query: 181 LMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
+MEIQVNGGSVA+KVDFA EK++P+D+VFQ++EMID+IGVTKG G+EGVV RWGVTR
Sbjct: 177 VMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEMIDVIGVTKGHGFEGVVKRWGVTR 236
Query: 241 LPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
LPRKTHRGLRKVACIGAWHPARV +TV RAGQ+GYHHRTE+NKKIY++G A + ++A T
Sbjct: 237 LPRKTHRGLRKVACIGAWHPARVQYTVPRAGQHGYHHRTELNKKIYRIGVAE-DPNNATT 295
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
E D TEK ITPMGGFPHYG V D+L++KGC VGPKKRV+TLR+SL+ QTSR ALE+I L
Sbjct: 296 EADLTEKTITPMGGFPHYGTVRNDFLMLKGCVVGPKKRVITLRKSLVPQTSRKALEKITL 355
Query: 361 KFIDTSSKFGHGRFQTTQEKAKYYGRLK 388
KFIDTSSK GHGRFQT +EKAK+YG LK
Sbjct: 356 KFIDTSSKIGHGRFQTKEEKAKFYGPLK 383
>gnl|CDD|235260 PRK04231, rpl3p, 50S ribosomal protein L3P; Reviewed.
Length = 337
Score = 324 bits (833), Expect = e-109
Identities = 147/370 (39%), Positives = 215/370 (58%), Gaps = 35/370 (9%)
Query: 3 HRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEK 62
RK PR GSL F PRKRA +++++P+ D +P +L F GYKAGMTH++ ++
Sbjct: 1 MRKIHRPRRGSLAFSPRKRAKSIVPRIRSWPEID-GEP-KLLGFAGYKAGMTHVIMIDDR 58
Query: 63 PGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNW 122
P S KE VT++ETPP+ V + Y K P GL+ L VWA+ L++E+ RR
Sbjct: 59 PNSPTEGKEIFVPVTVLETPPMRVAAIRAYEKDPYGLKVLTEVWAEDLDKELERRI---- 114
Query: 123 CKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLM 182
KK E + + LE+ K +RV+ HTQ + + G+ +KK +M
Sbjct: 115 ---------TLPKKDEKKKAFEKLLKLLEEGK--IVDVRVIVHTQPKLVTGVPKKKPEIM 163
Query: 183 EIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
EI++ GGSV +++++A K+I I VF++ +++D+I VTKGKG++GVV RWGV LP
Sbjct: 164 EIRIGGGSVEERLEYAKELLGKEISISDVFKEGQLVDVIAVTKGKGFQGVVKRWGVKLLP 223
Query: 243 RKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
RK R G R + +G W+P+RV +TV +AGQ G+H RTE NK+I K+G E
Sbjct: 224 RKHKRRGGSRHIGTLGPWNPSRVMWTVPQAGQMGFHQRTEYNKRILKIGDDGDE------ 277
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
ITP GGF HYG+V DY+LIKG GP KR++ LR ++ + +E ++
Sbjct: 278 --------ITPKGGFLHYGLVRNDYVLIKGSVPGPAKRLIRLRPAI--RPPEPPVEAPEI 327
Query: 361 KFIDTSSKFG 370
++ T SK G
Sbjct: 328 TYVSTESKQG 337
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3. This model
describes exclusively the archaeal class of ribosomal
protein L3. A separate model (TIGR03625) describes the
bacterial/organelle form, and both belong to Pfam family
pfam00297. Eukaryotic proteins are excluded from this
model [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 330
Score = 306 bits (785), Expect = e-102
Identities = 137/363 (37%), Positives = 207/363 (57%), Gaps = 36/363 (9%)
Query: 8 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKL 67
PR GSL F PRKRA R +++++P+ D +L F GYKAGMTH++ ++ S
Sbjct: 2 RPRRGSLAFSPRKRAKRIVPRIRSWPEVD--GEPKLQGFAGYKAGMTHVIMVDDRKNSPT 59
Query: 68 HKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKK 127
KE VT++E PPL V + Y K P GL+ L VWA +L++E+ R+
Sbjct: 60 EGKEISVPVTVLEAPPLRVAAIRAYGKDPYGLKVLTEVWANNLDKELSRKI--------- 110
Query: 128 KAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVN 187
K Y+ ++ + I+ LE +R++ HTQ + + G+ +KK +MEI++
Sbjct: 111 ----TLPKNYDVEEKLEKIEELLENDADD---VRLIVHTQPKLVTGVPKKKPEIMEIRIG 163
Query: 188 GGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT-- 245
GGSV ++ ++A K+I + VF++ +++D+I VTKGKG++GVV RWGV LPRK
Sbjct: 164 GGSVEERFEYALSILGKEISVSDVFKEGQLVDVIAVTKGKGFQGVVKRWGVKLLPRKHKR 223
Query: 246 HRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRT 305
+G R + +G W P+RV +TV +AGQ GYH RTE NK+I K+G+ E
Sbjct: 224 RKGGRHIGTLGPWTPSRVRWTVPQAGQMGYHQRTEYNKRILKIGEDGDE----------- 272
Query: 306 EKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDT 365
ITP GGF +YG+V DY+LIKG GP KR++ LR ++ + + ++ +I
Sbjct: 273 ---ITPKGGFVNYGLVRNDYVLIKGSVPGPSKRLIRLRDAI--RPPKPPEGAPEITYISL 327
Query: 366 SSK 368
SK
Sbjct: 328 ESK 330
>gnl|CDD|144036 pfam00297, Ribosomal_L3, Ribosomal protein L3.
Length = 199
Score = 231 bits (590), Expect = 5e-75
Identities = 112/297 (37%), Positives = 134/297 (45%), Gaps = 101/297 (34%)
Query: 50 KAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQH 109
KAGMTHI KK E VT+IE PP+VVV V Y
Sbjct: 1 KAGMTHIF---------TEKKGVLEPVTVIEVPPMVVVQVKTYE---------------- 35
Query: 110 LNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIR 169
ET+DG K IQ LE +KKY V RVL HTQ R
Sbjct: 36 ----------------------------ETNDGYKAIQVGLESIKKYRVVKRVLGHTQKR 67
Query: 170 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFE--KQIPIDAVFQKDEMIDIIGVTKGK 227
KAH+ME +VNGG FE + I + VF++ E +D+ GVTKGK
Sbjct: 68 GTP----PKAHVMEFRVNGGE----------EFEPGQTIAVSDVFREGEYVDVTGVTKGK 113
Query: 228 GYEGVVTRWGVTRLPRKTHRG-LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIY 286
G++GV+ RWG RLPRK RG RK IGAWHP RV V AGQ G HHRTE N KIY
Sbjct: 114 GFQGVMKRWGFKRLPRKHGRGYHRKPGSIGAWHPGRVFPGVKMAGQMGNHHRTEQNLKIY 173
Query: 287 KLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 343
++ + + LL+KG GPKKR+VT+R
Sbjct: 174 RIDQ-------------------------------ENNLLLVKGSVPGPKKRLVTIR 199
>gnl|CDD|223165 COG0087, RplC, Ribosomal protein L3 [Translation, ribosomal
structure and biogenesis].
Length = 218
Score = 166 bits (424), Expect = 7e-50
Identities = 81/315 (25%), Positives = 115/315 (36%), Gaps = 100/315 (31%)
Query: 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSL 102
+ FLGYK GMTH+ + + VT+IE PP VVV V Y G R
Sbjct: 1 MLGFLGYKVGMTHVFDE----------RGISVPVTVIEVPPNVVVQVKTYETD--GYR-A 47
Query: 103 CTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRV 162
V A +K V +
Sbjct: 48 VQVGAGD--------------------------------------------RKAKRVNKP 63
Query: 163 LAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIG 222
L K + K HL E +V GG VA+K + ++I +D VF++ E++D+ G
Sbjct: 64 LVGHFA---KAGVKPKRHLAEFRVGGGDVAEKFEVG-----QEITVD-VFKEGELVDVTG 114
Query: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIG-AWHPARVSFTVARAGQNGYHHRT 279
VTKGKG++GV+ RWG P L R+ IG P RV AG G T
Sbjct: 115 VTKGKGFQGVMKRWGFKGGPASHGSSLSHRRPGSIGQRQTPGRVFKGKKMAGHMGNERVT 174
Query: 280 EMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRV 339
N ++ K+ V + +L+KG G KKR+
Sbjct: 175 VQNLEVVKVD-------------------------------VENNLILVKGAVPGAKKRL 203
Query: 340 VTLRQSLLKQTSRLA 354
V +R ++ + A
Sbjct: 204 VVVRPAVKAKKKTSA 218
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated.
Length = 210
Score = 46.6 bits (112), Expect = 5e-06
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 36/139 (25%)
Query: 211 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH---RGLRKVACIGAWH-PARVSFT 266
+F+ + +D+ G +KGKG+ GV+ R + P +H R R+ IGA P RV
Sbjct: 99 IFEAGQKVDVTGTSKGKGFAGVIKRHNFSGGP-ASHGNSRSHRRPGSIGARQTPGRVFKG 157
Query: 267 VARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYL 326
AG G T N ++ K D E+++ L
Sbjct: 158 KKMAGHMGNERVTVQNLEVVK--------------VD-AERNL----------------L 186
Query: 327 LIKGCCVGPKKRVVTLRQS 345
L+KG G K +V ++ +
Sbjct: 187 LVKGAVPGAKGGLVIIKPA 205
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial. This
model describes bacterial (and mitochondrial and
chloroplast) class of ribosomal protein L3. A separate
model describes the archaeal form, where both belong to
Pfam family pfam00297. The name is phrased to meet the
needs of bacterial genome annotation. Organellar forms
typically will have transit peptides, N-terminal to the
region modeled here.
Length = 202
Score = 42.5 bits (101), Expect = 1e-04
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 211 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH---RGLRKVACIGA--WHPARVSF 265
+F+ + +D+ G +KGKG+ GV+ R + P +H + R IG P RV
Sbjct: 98 IFEAGQKVDVTGTSKGKGFAGVMKRHNFSGGP-ASHGNSKSHRAPGSIGQRQT-PGRVFK 155
Query: 266 TVARAGQNGYHHRTEMNKKI 285
AG G T N ++
Sbjct: 156 GKKMAGHMGNERVTVQNLEV 175
>gnl|CDD|177065 CHL00143, rpl3, ribosomal protein L3; Validated.
Length = 207
Score = 35.0 bits (81), Expect = 0.038
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 204 KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGA-WHP 260
+ + +DA F +++++ G + GKG+ G+ R +R P TH + R IGA P
Sbjct: 95 QPLTVDA-FSVGQLVNVSGKSIGKGFAGLQKRHNFSRGP-MTHGSKNHRAPGSIGAGTTP 152
Query: 261 ARVSFTVARAGQNGYHHRTEMNKKIYKL 288
RV AG+ G T N KI K+
Sbjct: 153 GRVYPGKKMAGRLGNKKVTIKNLKILKV 180
>gnl|CDD|222906 PHA02606, 5.1, hypothetical protein; Provisional.
Length = 179
Score = 32.2 bits (73), Expect = 0.25
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 40 PCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVV--GYVKTPR 97
P L Y+ + + ++ + G + E PP V + Y +T
Sbjct: 102 PQNLQKTFTYEVTLIYDYQEPSESGGSGSGSNSSEGAGETNPPPAPVRKTLTKVYTQTVV 161
Query: 98 GLRSLCTVWAQHLNEEVRRR 117
G S VWA L + V R
Sbjct: 162 GNWS---VWANQLRDYVYRG 178
>gnl|CDD|217492 pfam03321, GH3, GH3 auxin-responsive promoter.
Length = 513
Score = 31.1 bits (71), Expect = 0.97
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 184 IQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMI-DIIGVTKGKGYEGVVT 234
I ++ V+ + GFFE IP+D +D I D++ V GK YE V+T
Sbjct: 300 INLDPEDVSYTLMPNSGFFEF-IPVDEDGDEDPKIVDLVEVELGKNYELVIT 350
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family. This
glutaredoxin-like protein family contains the conserved
CxxC motif and includes the Clostridium pasteurianum
protein YruB which has been cloned from a rubredoxin
operon. Somewhat related to NrdH, it is unknown whether
this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 28.1 bits (63), Expect = 1.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 122 WCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKY 156
CK K+ T +E D +KD A+ E +K
Sbjct: 12 PCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL 46
>gnl|CDD|226705 COG4254, COG4254, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 339
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 333 VGPKKRVV--TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQ 375
V RV R + +K +L + K K H R+Q
Sbjct: 111 VPSGSRVTIAKFRFNDIKSVQQLQVAAGKGTSRVIPRKSKHSRYQ 155
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKY 156
YK W +KKK + K KKY+ + + + + KY
Sbjct: 235 YKKWIDNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKY 272
>gnl|CDD|219219 pfam06889, DUF1266, Protein of unknown function (DUF1266). This
family consists of several hypothetical bacterial
proteins of around 235 residues in length. Members of
this family seem to be found exclusively in the
Enterobacteria Salmonella typhimurium and Escherichia
coli. The function of this family is unknown.
Length = 171
Score = 28.5 bits (64), Expect = 3.9
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 255 IGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEF 302
I AW R +F GY E + + + +Q+S+ + ++
Sbjct: 78 ILAWDYGRAAFLARWGYLAGYISEEEAWDLLLRAARRAQQSYDSWEDY 125
>gnl|CDD|222839 PHA01807, PHA01807, hypothetical protein.
Length = 153
Score = 28.0 bits (62), Expect = 6.0
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 291 ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVG-------PKKRVVTLR 343
A + + DRTE + G V+ + G C+G P+ R +
Sbjct: 40 ALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVA 99
Query: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 386
+ L++ RLA E L I S + G GR+ + K YG+
Sbjct: 100 REFLRELIRLA-GEGNLPLIAFSHREGEGRYTIHYRRVKPYGQ 141
>gnl|CDD|217406 pfam03175, DNA_pol_B_2, DNA polymerase type B, organellar and
viral. Like pfam00136, members of this family are also
DNA polymerase type B proteins. Those included here are
found in plant and fungal mitochondria, and in viruses.
Length = 452
Score = 28.5 bits (64), Expect = 6.4
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 14/108 (12%)
Query: 119 YKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTV-IRVLAHTQIRKMKGLKQK 177
K W K+ K + DI ++ +YC + VLA I K +
Sbjct: 96 EKYWKDFKEYILNKEIWNLKNRPNGYDI---RKETIEYCKNDVLVLAKLLI-SFKNFIYE 151
Query: 178 K----AHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII 221
+ + S A F F+ I A E+ I
Sbjct: 152 EFNISDSFNTFTRSSLSHAI---FKQNFYLLDNKIPAP--SRELYTYI 194
>gnl|CDD|153332 cd07648, F-BAR_FCHO, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Proteins in
this group have been named FCH domain Only (FCHO)
proteins. Vertebrates have two members, FCHO1 and FCHO2.
These proteins contain an F-BAR domain and a C-terminal
domain of unknown function named SAFF which is also
present in endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 261
Score = 28.1 bits (63), Expect = 6.6
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 48/198 (24%)
Query: 53 MTHIVRDVEKPGSKLHKKE---------TCEAVTIIETPPLVVVGVVGYVKTPRGLRSLC 103
+ +++DV+K G + HKK T EAV I+T + K + C
Sbjct: 83 LQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAAL------QKAKEAYHARC 136
Query: 104 TVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTK----------KYETDDGKKDIQAQLE-K 152
E R R K +KA K K KY I+A E K
Sbjct: 137 -------LELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNN------IRADFETK 183
Query: 153 MKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVF 212
M C + + + +R+MK A ++ S +V + F++Q+ V
Sbjct: 184 MTDSCKRFQEIEESHLRQMKEFLASYAEVLS---ENHSAVGQV---HEEFKRQVDELTV- 236
Query: 213 QKDEMIDIIGVTKGKGYE 230
D+++ +KG G E
Sbjct: 237 --DKLLRQFVESKGTGTE 252
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 28.4 bits (63), Expect = 7.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 127 KKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKM 171
KKAF + KK+ D + EK K+ VL+ Q R+
Sbjct: 21 KKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 27.2 bits (60), Expect = 7.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 108 QHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETD-DGKKDIQAQLEKMKK 155
L EE + RF+K+ K K + +Y K E K+ ++ EK+++
Sbjct: 76 AKLKEESKTRFHKDEYKKLLKRYDEYLNKLEQKITDKEQQISEFEKIQE 124
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 28.6 bits (64), Expect = 7.7
Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 130 FTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIR----KMKGLKQKKA----HL 181
K +K + + D++ E +++ RV+ T +R ++ G++Q + +
Sbjct: 149 LKKLRQKSNKEAWENDMKEMYENLEE--MTNRVV--TSLRNYGPRLLGVRQTPSGVFCEI 204
Query: 182 MEIQ---VNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVT 234
+E VN G V G ++ +P +F + I+ + + K Y G+++
Sbjct: 205 LEFLSSIVNCGDSPGPVALPRGTIDEYLPTHRLFFGSKTIEAVSHNESK-YAGIIS 259
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 28.1 bits (63), Expect = 8.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 104 TVWAQHLNEEVRRRFYKNWCKSKKKAF 130
T + L+EE R + Y +WCK+ +++F
Sbjct: 479 TTFRPKLDEEERAKRYASWCKAVERSF 505
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 28.0 bits (63), Expect = 9.1
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 87 VGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCKSKKKAF 130
VG ++ L + + ++EE R Y W ++ K++
Sbjct: 448 VGYWKSLEEIEALWRVEKTFEPEMDEEEREARYAGWKEAVKRSL 491
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,877,026
Number of extensions: 1913411
Number of successful extensions: 1586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 35
Length of query: 389
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 290
Effective length of database: 6,546,556
Effective search space: 1898501240
Effective search space used: 1898501240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)