RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016469
(389 letters)
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 324 bits (832), Expect = e-110
Identities = 119/370 (32%), Positives = 177/370 (47%), Gaps = 38/370 (10%)
Query: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPG 64
+ PR GSLGF PRKR++ + ++P DD + F GYKAGMTH+V ++P
Sbjct: 2 QPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQP--GVQGFAGYKAGMTHVVLVNDEPN 59
Query: 65 SKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCK 124
S E VT+IETPP+ V + Y TP G R L VW + E+ R
Sbjct: 60 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDH 119
Query: 125 SKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEI 184
A + +E +R++ HT + + +KK +ME
Sbjct: 120 DPDAAEEQIRDAHE---------------AGDLGDLRLITHTVPDAVPSVPKKKPDVMET 164
Query: 185 QVNGGSVAQKVDFAYGFFE--KQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
+V GGSV+ ++D A E + ++ +F+ E D+ GVTKGKG +G V RWGV +
Sbjct: 165 RVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRK 224
Query: 243 RKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMT 300
K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+
Sbjct: 225 GKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGE---------- 274
Query: 301 EFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 360
+ T GGF +YG V+ Y L+KG GP KR+V R ++ E+
Sbjct: 275 -----GDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQPRLDPEV-- 327
Query: 361 KFIDTSSKFG 370
+++ S G
Sbjct: 328 RYVSNESNQG 337
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 89.7 bits (222), Expect = 1e-21
Identities = 43/306 (14%), Positives = 71/306 (23%), Gaps = 103/306 (33%)
Query: 43 LTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSL 102
+ +G K GMT I + G + VT+IE V V
Sbjct: 1 MIGLVGKKVGMTRIFTE---DGVSI-------PVTVIEVEANRVTQVKDLANDG------ 44
Query: 103 CTVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRV 162
Y+ + K E
Sbjct: 45 ----------------YRAIQVTTGAKKANRVTKPE------------------------ 64
Query: 163 LAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIG 222
++ G ++ F Q +F + +D+ G
Sbjct: 65 -------------AGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTG 111
Query: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRT 279
+KGKG+ G V RW L P +V AGQ G T
Sbjct: 112 TSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVT 171
Query: 280 EMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRV 339
+ + ++ + LL+KG G
Sbjct: 172 VQSLDVVRVD-------------------------------AERNLLLVKGAVPGATGSD 200
Query: 340 VTLRQS 345
+ ++ +
Sbjct: 201 LIVKPA 206
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
thermophilus [TaxId: 274]}
Length = 205
Score = 74.0 bits (181), Expect = 5e-16
Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 34/184 (18%)
Query: 165 HTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 224
+ + + + V + E +F+ E +D+ G +
Sbjct: 49 LGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTS 108
Query: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEM 281
KG+G+ GV+ RW P + P RV AG G T M
Sbjct: 109 KGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVM 168
Query: 282 NKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVT 341
N ++ + + E+ LL+KG GP +V
Sbjct: 169 NLEVVDV-------------------------------IPEENLLLVKGAVPGPNGGLVI 197
Query: 342 LRQS 345
+R++
Sbjct: 198 VRET 201
Score = 45.1 bits (106), Expect = 4e-06
Identities = 28/161 (17%), Positives = 42/161 (26%), Gaps = 19/161 (11%)
Query: 46 FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRSL--C 103
LG K GMT I RD + VT+I P VV K L
Sbjct: 4 ILGVKVGMTRIFRD-----------DRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFL 52
Query: 104 TVWAQHLNEEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVI--- 160
+ +N ++ F K + + E D +I E++ T
Sbjct: 53 PQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRG 112
Query: 161 ---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 198
+ K H + +V
Sbjct: 113 FAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKG 153
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 69.7 bits (170), Expect = 1e-14
Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 34/179 (18%)
Query: 170 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGY 229
K + K + +F + +F + E ID G +KGKG
Sbjct: 54 KAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGT 113
Query: 230 EGVVTRWGVTRLPRKTHRGLRKVACIGAWH---PARVSFTVARAGQNGYHHRTEMNKKIY 286
+GV+ RW P P RV AG G T N ++
Sbjct: 114 QGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVV 173
Query: 287 KLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQS 345
++ E+ +L+KG G +V LR +
Sbjct: 174 EIR-------------------------------AGENLILVKGAIPGANGGLVVLRSA 201
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 29.6 bits (66), Expect = 0.62
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKD 145
Y++W K + +K+YET K+
Sbjct: 213 MKYRDWIIRSKFEWHTLSKEYETQKVPKE 241
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.9 bits (64), Expect = 1.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKD 145
YK W KK+ + K K+Y+ +
Sbjct: 241 NSYKEWISKKKEEYNKQAKQYQEYQKGNN 269
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 2.2
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 271 GQNGYHHRTEMNKKIYKLGK---ASQESHSAMTE------------FDRTEKDITPMGGF 315
G + ++ KL A QE +T +D T +D
Sbjct: 41 GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 100
Query: 316 PHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHG 372
+ + K R+ + + A + + FI+ S+K G
Sbjct: 101 WLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-RKHSMLFIEASAKTCDG 156
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 27.3 bits (60), Expect = 2.9
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQ-----LEKMKKYC 157
+ Y W KKK + + K+ + + I + + +K+
Sbjct: 222 KSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQEL 267
>d2f41a1 d.38.1.5 (A:73-183) Transcription factor FapR, C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 111
Score = 25.3 bits (55), Expect = 6.4
Identities = 1/29 (3%), Positives = 9/29 (31%)
Query: 293 QESHSAMTEFDRTEKDITPMGGFPHYGVV 321
+ A++ + ++ + +
Sbjct: 10 ELDDQAISILEIKQEHVFSRNQIARGHHL 38
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 25.8 bits (57), Expect = 7.3
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 87 VGVVGYVKTPRGLRSLCTVWAQHLNEEVRRRFYKN 121
+GVV Y +T L + + N + +R Y
Sbjct: 97 IGVVTYQETIPALVAFQ----KTFNLRLDQRSYIT 127
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 25.5 bits (55), Expect = 8.4
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 24/119 (20%)
Query: 117 RFYKNWCKSKKKAFTKYTKKYET-DDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLK 175
RF +W + K E + + ++ + + + +
Sbjct: 28 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFF--- 84
Query: 176 QKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDII-----GVTKGKGY 229
+ + G A+ K EM+DII G KG+G
Sbjct: 85 -----------RN----KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGL 128
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
maritima [TaxId: 2336]}
Length = 301
Score = 26.0 bits (57), Expect = 8.8
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 28/120 (23%)
Query: 10 RHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHK 69
R G L + +V F + + + +K L+
Sbjct: 80 REGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEG---KDAMQSIDLYM 136
Query: 70 K--ETCEAVTIIETPPLVVV--------------GVVGYVKTPRGLRSLCTVWAQHLNEE 113
+ E E ++ L+V G +G VK + L++E
Sbjct: 137 RSLEIEEVRKHMDKNILIVKDGPAARELPFEENVGPIGLVK---------NIGVTELSKE 187
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 25.0 bits (54), Expect = 9.2
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 112 EEVRRRFYKNWCKSKKKAFTKYTKKYETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKM 171
+ V+++ + W + + D +D++ +++ VL+ + +
Sbjct: 3 DRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGH----NLISLLEVLSGDSLPRE 58
Query: 172 KGLKQKKAH 180
KG +
Sbjct: 59 KGRMRFHKL 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,507,901
Number of extensions: 73041
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 22
Length of query: 389
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,213,086
Effective search space: 366351972
Effective search space used: 366351972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)