BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016470
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NAS D GI TPL LA +G +EIV E+ + V D++G
Sbjct: 68 KNGADVNAS--DLTGI----------TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGH 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A KY LEI E++++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK 134
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 49 SAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
+A DN TPL LA +G +EIV E+ V D G LH+A LEI E++
Sbjct: 41 NATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 108 IQMEVPMRRLVRKIDNGGNTLLHMT 132
++ V DN G+T LH+
Sbjct: 100 LKHGAD----VNAYDNDGHTPLHLA 120
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 113 PMRRLVRKIDNGGNTLLHMTG 133
V D G T LH+
Sbjct: 60 D----VNAKDKNGRTPLHLAA 76
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 113 PMRRLVRKIDNGGNTLLHMTG 133
V D G T LH+
Sbjct: 93 D----VNAKDKNGRTPLHLAA 109
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 113 PMRRLVRKIDNGGNTLLHMTG 133
V D G T LH+
Sbjct: 60 D----VNAKDKNGRTPLHLAA 76
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
N TPL LA ++G +E+VK + V D GR LH+A + LE+ +L+++
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRL 117
L AT++G + V+ I V +DD G LH+A K LEI E++++
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---- 72
Query: 118 VRKIDNGGNTLLHMT 132
V D+ G T LH+
Sbjct: 73 VNASDSWGRTPLHLA 87
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 21 QDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA 80
QD + GA+ NA+ D G+ TPL LA G +EIV E+ +
Sbjct: 26 QDDEVRILMANGADVNAT--DASGL----------TPLHLAATYGHLEIV-EVLLKHGAD 72
Query: 81 VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI 134
V ID G LH+A LEI E++++ V +D G+T LH+ I
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHLAAI 122
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA +D G TPL LA G +EIV E+ + V +D G
Sbjct: 68 KHGADVNA--IDIXG----------STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGD 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 21 QDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA 80
QD + GA+ NA+ D G+ TPL LA G +EIV E+ +
Sbjct: 26 QDDEVRILMANGADVNAT--DASGL----------TPLHLAATYGHLEIV-EVLLKHGAD 72
Query: 81 VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI 134
V ID G LH+A LEI E++++ V +D G+T LH+ I
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHLAAI 122
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA +D G TPL LA G +EIV E+ + V +D G
Sbjct: 68 KHGADVNA--IDIMG----------STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGD 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA K+G +EIV E+ Y V D+ G LH+A LEI E++++
Sbjct: 47 GHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 32 GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NAS D + TPL A K G EIVK + + V D +GR
Sbjct: 27 GADVNASDSDGR------------TPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTP 73
Query: 92 LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
LH A K EI +L+I V D+ G T LH
Sbjct: 74 LHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLH 108
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 43 KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
KG ++ + TPL A K G EIVK + + V D +GR LH A K E
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKE 117
Query: 103 IFELVI 108
I +L+I
Sbjct: 118 IVKLLI 123
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 43 KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE 102
KG ++ + TPL A K G EIVK + + V D +GR L +A ++ E
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEE 150
Query: 103 IFELV 107
I +L+
Sbjct: 151 IVKLL 155
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 15 EITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF 74
E T + QD + GA+ NA +D G+ TPL LA K G +EIV E+
Sbjct: 20 EATRAGQDDEVRILMANGADVNA--MDDAGV----------TPLHLAAKRGHLEIV-EVL 66
Query: 75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
+ V D GR LH+A LEI E++++
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 47 ESSAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 105
+ +A DN TPL LA SG +EIV E+ + V+ D G LH+A + LEI E
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVE 97
Query: 106 LVIQMEVPMRRLVRKIDNGGNTLLHMT 132
++++ V +D+ G T LH+
Sbjct: 98 VLLKNGAD----VNAMDSDGMTPLHLA 120
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA G +EIV E+ V +D +G LH+A K+ LEI E++++
Sbjct: 82 TPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 32 GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGR 89
GA+PNAS D + TPL A ++G EIVK + + P A D +GR
Sbjct: 27 GADPNASDSDGR------------TPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGR 71
Query: 90 NILHVAIKYRQLEIFELVI 108
LH A + EI +L++
Sbjct: 72 TPLHYAAENGHKEIVKLLL 90
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
D+ +TPL LA G +EIV E+ + V D G LH+A Y LEI E++++
Sbjct: 45 DSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+Y A+ NAS D+ G TPL LA G +EIV E+ Y V +D +G
Sbjct: 68 KYAADVNAS--DKSGW----------TPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGY 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A + LEI E++++
Sbjct: 115 TPLHLAAEDGHLEIVEVLLK 134
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
TPL L +G +EI+ E+ Y V D G LH+A LEI E++++
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V +D G T LH+
Sbjct: 106 --VNAMDYQGYTPLHLA 120
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP 113
+TPL LA + G +EIV E+ V +D G LH+A K LEI E++++
Sbjct: 47 GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 114 MRRLVRKIDNGGNTLLHMT 132
V D G+T LH+
Sbjct: 106 ----VNADDTIGSTPLHLA 120
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA K G +EIV E+ Y V D G LH+A LEI E++++
Sbjct: 82 TPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 23/104 (22%)
Query: 32 GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGR 89
GA+ NAS D K TPL LA ++G E+VK + + P A D +G+
Sbjct: 27 GADVNASDSDGK------------TPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGK 71
Query: 90 NILHVAIKYRQLEIFELVI-QMEVPMRRLVRKIDNGGNTLLHMT 132
LH+A + E+ +L++ Q P + D+ G T LH+
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAK-----DSDGKTPLHLA 110
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 31 YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEG 88
GA+PNA D K TPL LA ++G E+VK + + P D +G
Sbjct: 92 QGADPNAKDSDGK------------TPLHLAAENGHKEVVKLLLSQGADPNTS---DSDG 136
Query: 89 RNILHVAIKYRQLEIFELV 107
R L +A ++ E+ +L+
Sbjct: 137 RTPLDLAREHGNEEVVKLL 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 106 --VNAKDKDGYTPLHLA 120
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 47 ESSAIDNAE-TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 105
+ +A+DN TPL LA SG +EIV E+ + V+ D G LH+A LEI E
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 106 LVIQMEVPMRRLVRKIDNGGNTLLHMT 132
++++ V D G+T LH+
Sbjct: 98 VLLKYGAD----VNAFDMTGSTPLHLA 120
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA +G +EIV E+ Y V D G LH+A LEI E++++
Sbjct: 82 TPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 94 --VNAKDKDGYTPLHLA 108
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 116 RLVRKIDNGGNTLLHMT 132
V D G T LH+
Sbjct: 94 --VNAKDKDGYTPLHLA 108
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA + G +EIV+ + V D +G LH+A + LEI E++++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
++GA+ NA D TPL LA +G +EIV E+ Y V D G
Sbjct: 68 KHGADVNARDTD------------GWTPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGL 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A LEI E++++
Sbjct: 115 TPLHLAADRGHLEIVEVLLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NAS D GI TPL LA G +EIV E+ + V D G
Sbjct: 60 KNGADVNAS--DSAGI----------TPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGW 106
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A QLEI E++++
Sbjct: 107 TPLHLAALSGQLEIVEVLLK 126
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME 111
DN TPL LA +G +EIV E+ V D G LH+A LEI E++++
Sbjct: 37 DNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 112 VPMRRLVRKIDNGGNTLLHMTGI 134
V D G T LH+ +
Sbjct: 96 AD----VNAYDRAGWTPLHLAAL 114
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 48 SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLEIFE 105
S A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++ + E
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 106 LVIQMEVPMRRLVRKIDNGGNTLLH 130
++Q V D GG LH
Sbjct: 62 YLLQHGAD----VHAKDKGGLVPLH 82
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA + G +EIV E+ V D G LH+A K LEI E++++
Sbjct: 82 TPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLEIFELVIQME 111
A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++ + E ++Q
Sbjct: 12 ADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 69
Query: 112 VPMRRLVRKIDNGGNTLLH 130
V D GG LH
Sbjct: 70 AD----VHAKDKGGLVPLH 84
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI--LHVAIKYRQLEIFELVIQME 111
A+ L A K+G +E VK++ V Q+V D EGR LH A Y ++ + E ++Q
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 112 VPMRRLVRKIDNGGNTLLH 130
V D GG LH
Sbjct: 66 AD----VHAKDKGGLVPLH 80
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 30 RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
+ GA+ NA VD G+ TPL LA G +EIV E+ V D EG
Sbjct: 68 KNGADVNA--VDHAGM----------TPLRLAALFGHLEIV-EVLLKNGADVNANDMEGH 114
Query: 90 NILHVAIKYRQLEIFELVIQ 109
LH+A + LEI E++++
Sbjct: 115 TPLHLAAMFGHLEIVEVLLK 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 32 GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NA+ D+KG TPL LA +EIV E+ + V D++G
Sbjct: 37 GADVNAN--DRKG----------NTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTP 83
Query: 92 LHVAIKYRQLEIFELVIQ 109
LH+A + LEI E++++
Sbjct: 84 LHLAALFGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRL 117
L A ++G + V+ I V D +G LH+A Y LEI E++++
Sbjct: 18 LLEAARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD---- 72
Query: 118 VRKIDNGGNTLLHMTGI 134
V DN G+T LH+ +
Sbjct: 73 VNAHDNDGSTPLHLAAL 89
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + +I+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 110 MEVPMR 115
+R
Sbjct: 129 NGASVR 134
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + +I+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 110 MEVPMR 115
+R
Sbjct: 129 NGASVR 134
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
D+ TP +A G +E+VK +++ + P + I ++G LH+A+ + E+ + +I+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 110 MEVPMR 115
+R
Sbjct: 129 NGASVR 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 47 ESSAID-NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 105
+ +A+D N TPL LA G +EIV E+ Y V D G L++A + LEI E
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 106 LVIQ 109
++++
Sbjct: 119 VLLK 122
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 47 ESSAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFE 105
+++A D+ TPL +A G +EIV E+ V +D G LH+A LEI E
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVE 85
Query: 106 LVIQ 109
++++
Sbjct: 86 VLLK 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA G +EIV E+ V DD G LH+A LEI E++++
Sbjct: 82 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
TPL LA G +EIV E+ V D G LH+A + LEI E++++
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD-- 105
Query: 116 RLVRKIDNGGNTLLHMT 132
V D+ G T LH+
Sbjct: 106 --VNAKDDNGITPLHLA 120
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM 110
DN TPL LA G +EIV E+ Y V D G+ ++I ++ E++ ++
Sbjct: 111 DNGITPLHLAANRGHLEIV-EVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 32 GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
GA+ NAS D + TPL A ++G E+VK + + V D +GR
Sbjct: 27 GADVNASDSDGR------------TPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP 73
Query: 92 LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
LH A + E+ +L+I V D+ G T LH
Sbjct: 74 LHHAAENGHKEVVKLLISKGAD----VNAKDSDGRTPLH 108
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 21 QDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA 80
QD + GA+ NA +D+ G+ TPL LA + G +EIV E+ Y
Sbjct: 26 QDDEVRILMANGADVNA--LDEDGL----------TPLHLAAQLGHLEIV-EVLLKYGAD 72
Query: 81 VEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
V D+ G LH+A LEI E++++
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN 123
SG +E +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 72
Query: 124 GGNTLLHMTGIKRSDYVPEKMEGPA 148
G + LH+ D + + + G
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKG 97
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN 123
SG +E +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYVPEKMEG 146
G + LH+ D + + + G
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLG 94
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL+LAT G +EIV E+ V +D G LH+A LEI E++++
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 26 PKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF--NVYPQAVEH 83
P + ++GAN A + DQ PL LA + G ++VK + N P
Sbjct: 103 PLLLKHGANAGARNADQA------------VPLHLACQQGHFQVVKCLLDSNAKPNKK-- 148
Query: 84 IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE 142
D G L A E+ L++Q + +N GNT LH I++ +V E
Sbjct: 149 -DLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVVE 202
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
TPL LA + +EIV E+ V ID G LH+ Y LEI E++++
Sbjct: 49 TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN 123
SG ++ +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYV 140
G + LH+ D +
Sbjct: 72 AGWSPLHIAASAGXDEI 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN 123
SG ++ +KE D + R LH A EI E ++Q+ VP V D+
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDKDD 71
Query: 124 GGNTLLHMTGIKRSDYV 140
G + LH+ D +
Sbjct: 72 AGWSPLHIAASAGRDEI 88
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 50 AIDNAETPLFLATKSGCIEIVKEIFNV-YPQAVEHIDDEGRNILHVAIKYRQLEIFELVI 108
A TPL +A + G +E V + QA + +G LHVA KY ++ + EL++
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQAC--MTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 109 QME 111
+ +
Sbjct: 167 ERD 169
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 40 VDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF--NVYPQAVEHIDDEGRNILHVAIK 97
V +KG + ++ +TP+ LA + G IE+V + +AV+ D R +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNH 358
Query: 98 YRQLEIFE 105
+ ++IF+
Sbjct: 359 HNIVDIFD 366
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 29 HRYGANPNASSVDQKGI--GESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD 86
H G NP+ + ++G+ G S I T L +AT+ VK ++ P A+
Sbjct: 141 HFIGTNPDLNIPTERGLLPGAGSLI----TLLEVATR------VKPVYIGKPNAI----- 185
Query: 87 EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYV 140
I+ A+++ LE EL++ + + + IDNG TLL TG +++ V
Sbjct: 186 ----IMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEV 235
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 21 QDQSKPKIHRYGANPNASSVDQ---KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY 77
+D + P +H N +A V + KG ++ + TPL LA K+G EIVK +
Sbjct: 7 KDGNTP-LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 78 PQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
V +G H+A K EI +L+
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 55 ETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKY---RQLEIFELV 107
ETPLFLA + G E K + + + +H+D R+I + + R L+ + LV
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 55 ETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKYRQLEIFEL 106
ETPLFLA + G E K + + + +H+D R+I + + + + +L
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 55 ETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKYRQLEIFEL 106
ETPLFLA + G E K + + + +H+D R+I + + + + +L
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 55 ETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNILHVAIKY---RQLEIFELV 107
ETPLFLA + G E K + + + +H+D R+I + + R L+ + LV
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 249
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 55 ETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNI 91
ETPLFLA + G E K + + + +H+D R+I
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 194
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 42 QKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA--VEHIDDEGRNI 91
+ G + + ETPLFLA + G E K + + + +H+D R+I
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,352,984
Number of Sequences: 62578
Number of extensions: 383539
Number of successful extensions: 928
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 106
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)