Query 016472
Match_columns 389
No_of_seqs 231 out of 359
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 8E-127 2E-131 937.3 27.5 311 35-389 43-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 1.3E-85 2.8E-90 628.4 17.3 245 101-383 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.1E-19 2.5E-24 185.9 4.4 78 297-384 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.3 8.1E-05 1.8E-09 75.4 20.8 72 297-384 273-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 5.6E-06 1.2E-10 59.7 0.4 36 37-80 1-36 (47)
6 PF00646 F-box: F-box domain; 97.5 1.6E-05 3.5E-10 56.9 -0.6 39 36-82 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 7.2E-05 1.6E-09 76.6 1.9 40 35-81 2-41 (373)
8 smart00256 FBOX A Receptor for 97.2 6.8E-05 1.5E-09 51.3 -0.0 34 40-81 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 89.5 0.16 3.5E-06 51.6 1.3 43 34-79 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 67.5 1.8 3.8E-05 44.5 -0.0 68 36-111 97-167 (419)
11 PF04525 Tub_2: Tubby C 2; In 37.3 1.7E+02 0.0037 26.7 7.8 78 106-186 62-144 (187)
12 PF11038 DGF-1_5: Dispersed ge 29.8 77 0.0017 30.8 4.3 100 63-190 20-126 (278)
13 PF11922 DUF3440: Domain of un 20.7 94 0.002 29.5 3.0 22 73-94 150-171 (181)
14 KOG4341 F-box protein containi 20.7 44 0.00095 35.8 0.9 56 35-99 70-125 (483)
15 KOG0274 Cdc4 and related F-box 20.2 23 0.00051 38.4 -1.3 43 31-81 102-144 (537)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=8.5e-127 Score=937.33 Aligned_cols=311 Identities=59% Similarity=0.984 Sum_probs=287.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceEEEEEEE
Q 016472 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR 114 (389)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~iv~~p~~~g~~tFp~sLkqPgPr~~~iQC~I~R 114 (389)
+.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceEEEEeecccccc--CCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeeeeeccceecEEEEecCCCCCCC
Q 016472 115 NRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG 192 (389)
Q Consensus 115 ~k~~~tY~LyL~l~~~~~--e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGKLRSNflGTkF~iYD~g~p~~~ 192 (389)
||+|++|+||++|++++. |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~--- 199 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN--- 199 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence 999999999999999763 789999999999999999999999999999999999999999999999999999732
Q ss_pred CccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016472 193 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS 272 (389)
Q Consensus 193 a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~P~~~~~~~~~~~~~~~ 272 (389)
.+|.++ ++|+++++||+|+||+||||+||||||+|+||.||.++ +||++|.|+...+..
T Consensus 200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~------ 258 (355)
T KOG2502|consen 200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS------ 258 (355)
T ss_pred -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc------
Confidence 122333 68899999999999999999999999999999999987 899998887654311
Q ss_pred ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEeCCCCCCCCCCCCeEEEE
Q 016472 273 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 352 (389)
Q Consensus 273 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQ 352 (389)
.+...++..++++++|+||+|+|||++||||||||||||+||||||||||.. ++++||||
T Consensus 259 -------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ 318 (355)
T KOG2502|consen 259 -------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ 318 (355)
T ss_pred -------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence 1222333347899999999999999999999999999999999999999974 56999999
Q ss_pred eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016472 353 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389 (389)
Q Consensus 353 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE 389 (389)
|||||||+|||||+||||+||||||||||||+|||||
T Consensus 319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=1.3e-85 Score=628.36 Aligned_cols=245 Identities=56% Similarity=0.899 Sum_probs=185.3
Q ss_pred CCCCCceEEEEEEEeecCceEEEEeeccccc-cCCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeeeeeccceec
Q 016472 101 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 179 (389)
Q Consensus 101 PgPr~~~iQC~I~R~k~~~tY~LyL~l~~~~-~e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGKLRSNflGT 179 (389)
|||+|++|||+|+|||+|.+|+||+.++..+ .++|||||||||++++++|||||||+++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 8999999999999999998777776666654 489999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCCCcc
Q 016472 180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQ 259 (389)
Q Consensus 180 kF~iYD~g~p~~~a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~~gg~~P~~ 259 (389)
+|+|||+|++++.+. ..+|..+.+++|||+|.||+||||+||||||+|+||+|+.+..++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999997665432 1256677889999999999999999999999999999988777666655433
Q ss_pred ceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEeCCCC
Q 016472 260 TEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 339 (389)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~ 339 (389)
..- ...+..+........+++++|+||+|+||+++++|+|||+||||+|||||||||+..
T Consensus 148 p~~------------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~-- 207 (246)
T PF01167_consen 148 PLN------------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS-- 207 (246)
T ss_dssp -SS-------------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT--
T ss_pred ccc------------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC--
Confidence 110 000111112223456789999999999999999999999999999999999999873
Q ss_pred CCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 016472 340 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 383 (389)
Q Consensus 340 ~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFD 383 (389)
+++++||||||+++|+|+|||+|||||+|||||||||||
T Consensus 208 -----~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 208 -----DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -----BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 678999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.77 E-value=1.1e-19 Score=185.90 Aligned_cols=78 Identities=42% Similarity=0.731 Sum_probs=72.4
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016472 297 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 376 (389)
Q Consensus 297 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 376 (389)
+..++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+.|||||+|+.+.|++||+||||+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 5569999999999999999999999999999999999763 578999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016472 377 ICLSSFDT 384 (389)
Q Consensus 377 I~LssFDt 384 (389)
+||++.--
T Consensus 555 valanvtq 562 (565)
T KOG2503|consen 555 VALANVTQ 562 (565)
T ss_pred HHHhhhhh
Confidence 99998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.33 E-value=8.1e-05 Score=75.37 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=54.0
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016472 297 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 376 (389)
Q Consensus 297 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 376 (389)
.+.||.|..- .+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+
T Consensus 273 ~L~VL~n~~~----------~~~~~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFS 336 (346)
T PF12043_consen 273 PLRVLSNQSQ----------NSKKSSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFS 336 (346)
T ss_pred CeEEeCCCCc----------cccccccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHH
Confidence 5677776522 122345556677788997652 234448999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016472 377 ICLSSFDT 384 (389)
Q Consensus 377 I~LssFDt 384 (389)
||++-.++
T Consensus 337 iciA~lh~ 344 (346)
T PF12043_consen 337 ICIAVLHS 344 (346)
T ss_pred Hhheeeec
Confidence 99987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.79 E-value=5.6e-06 Score=59.68 Aligned_cols=36 Identities=36% Similarity=0.777 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016472 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (389)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (389)
|..||+|+|.+|+..++. +++..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999988843 278999999999999884
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.51 E-value=1.6e-05 Score=56.91 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhh
Q 016472 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI 82 (389)
Q Consensus 36 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~i 82 (389)
.|.+||+|++.+|+.+++-. ++++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~--------~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPK--------DLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HH--------HHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHH--------HHHHHHHHhhHHHHHHcCC
Confidence 47899999999999999664 3899999999999998764
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.38 E-value=7.2e-05 Score=76.59 Aligned_cols=40 Identities=33% Similarity=0.658 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
..|+.||+|||+.|..|| |++-|++--++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 369999999999999999 9999999999999999998765
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.25 E-value=6.8e-05 Score=51.27 Aligned_cols=34 Identities=38% Similarity=0.813 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 40 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 40 ~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
||+|++.+|+.++ |. ++..+|+.||+.||.++++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 44 7889999999999998854
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.48 E-value=0.16 Score=51.62 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCCCCC---CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHh
Q 016472 34 TCCWAN---LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQIT 79 (389)
Q Consensus 34 ~~~w~~---~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 79 (389)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999995432 12356789999999877654
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.46 E-value=1.8 Score=44.50 Aligned_cols=68 Identities=19% Similarity=0.456 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh--hhcCcccccccccccccccCCCCCc-eEEEE
Q 016472 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE--IVKVPELSGYLTFPISVKQPGPRDY-LLQCF 111 (389)
Q Consensus 36 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~--iv~~p~~~g~~tFp~sLkqPgPr~~-~iQC~ 111 (389)
.|.+||.|+|.+|..- =..++...-|+||++|-.+..+ .-...+..|+---|.+|-|=.-|+. .++|-
T Consensus 97 ~~~slpDEill~IFs~--------L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSC--------LCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred CcccCCHHHHHHHHHh--------ccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 3999999999999964 4678899999999999887754 2345667777667777777666774 46664
No 11
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=37.34 E-value=1.7e+02 Score=26.69 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=30.8
Q ss_pred ceEEEEEEEeecC--ceEEEEeeccccccCCCeEEEEEEecc-cCCcceEEEEecCC-CC-CCCCCceeeeeeccceecE
Q 016472 106 YLLQCFIKRNRST--QTYHLYLSLTNALADDGKFLLAARKCR-RATCTDYIISLHSD-DM-SKGSSTYLGKLRSNFLGTK 180 (389)
Q Consensus 106 ~~iQC~I~R~k~~--~tY~LyL~l~~~~~e~gkfLLaArK~r-r~~tsnYiISld~~-dl-Sr~s~~yvGKLRSNflGTk 180 (389)
|..-..|+|..-+ ++|..|.+-. .++.+.+...||.. -...++..+.+.+. .. .-++...-=+|+.||++-.
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 4455677764322 5899998521 12235677777662 22233333333322 11 0112223346899999999
Q ss_pred EEEecC
Q 016472 181 FIVYDG 186 (389)
Q Consensus 181 F~iYD~ 186 (389)
|+|||.
T Consensus 139 ~~I~~~ 144 (187)
T PF04525_consen 139 FTIYDS 144 (187)
T ss_dssp -EEEEC
T ss_pred EEEEEc
Confidence 999973
No 12
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=29.85 E-value=77 Score=30.78 Aligned_cols=100 Identities=27% Similarity=0.434 Sum_probs=58.3
Q ss_pred cceeeecccchhHHHHhHhhhcCccccccccc-ccccccC----CCCCceE-EEEEEEeecCceEEEEeeccccccCCCe
Q 016472 63 RSVVACAGVCRSWRQITKEIVKVPELSGYLTF-PISVKQP----GPRDYLL-QCFIKRNRSTQTYHLYLSLTNALADDGK 136 (389)
Q Consensus 63 ~~vv~ca~vc~~wr~~~~~iv~~p~~~g~~tF-p~sLkqP----gPr~~~i-QC~I~R~k~~~tY~LyL~l~~~~~e~gk 136 (389)
+-.|+|+..|| |. ++|+..-.++| |.|+.|| +|++.++ .-.-.||+.++. +.
T Consensus 20 ~~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp~--------------~v 77 (278)
T PF11038_consen 20 KLTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNPS--------------TV 77 (278)
T ss_pred ceEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCCc--------------ee
Confidence 45689999999 75 46887777887 5588898 4666433 345556665542 23
Q ss_pred EEEEEEecccCCcceEEEEecCCCCCCCCC-ceeeeeeccceecEEEEecCCCCC
Q 016472 137 FLLAARKCRRATCTDYIISLHSDDMSKGSS-TYLGKLRSNFLGTKFIVYDGQPPH 190 (389)
Q Consensus 137 fLLaArK~rr~~tsnYiISld~~dlSr~s~-~yvGKLRSNflGTkF~iYD~g~p~ 190 (389)
+=|++-+- ..|.|-+|.+-+-|-.. .-.|--+.-++| .|||-.+-||.
T Consensus 78 lelavp~~-----~~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~~ 126 (278)
T PF11038_consen 78 LELAVPVH-----RGYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPPA 126 (278)
T ss_pred EEEEEecc-----CceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcHH
Confidence 33444333 35777777765444221 122222223334 58887776653
No 13
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=20.72 E-value=94 Score=29.49 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred hhHHHHhHhhhcCccccccccc
Q 016472 73 RSWRQITKEIVKVPELSGYLTF 94 (389)
Q Consensus 73 ~~wr~~~~~iv~~p~~~g~~tF 94 (389)
++||.||+-|.++.--|-.+.|
T Consensus 150 PswkRic~~ilKND~~cr~lsF 171 (181)
T PF11922_consen 150 PSWKRICKCILKNDYWCRYLSF 171 (181)
T ss_pred chHHHHHHHHHccchhhhhccC
Confidence 8999999999999988888888
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.67 E-value=44 Score=35.81 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccc
Q 016472 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVK 99 (389)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~iv~~p~~~g~~tFp~sLk 99 (389)
+-=-.|||||+.-|..-|+- +...-||.+|+.|-..+-+.+.= ..-+-.||+..+.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDt--------ksl~r~a~~c~~~n~~AlD~~~~-q~idL~t~~rDv~ 125 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDT--------KSLCRAAQCCTMWNKLALDGSCW-QHIDLFTFQRDVD 125 (483)
T ss_pred cccccCCHHHHHHHHHHHhH--------HHHHHHHHHHHHhhhhhhccccc-eeeehhcchhcCC
Confidence 33336999999999998842 45667999999999888764321 1122246665554
No 15
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=20.18 E-value=23 Score=38.37 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 31 ~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
..+..-=..||.||..-|+.-+ +. ++...|++||+.|+.++..
T Consensus 102 ~~~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred ccccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhc
Confidence 3455566789999998898888 55 6699999999999987754
Done!