Query 016472
Match_columns 389
No_of_seqs 231 out of 359
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 7.7E-91 2.6E-95 672.6 22.5 242 98-389 29-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 4E-88 1.4E-92 644.5 22.6 236 98-383 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 6E-07 2E-11 65.0 1.5 40 33-80 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00021 7.1E-09 66.7 1.2 40 33-80 5-44 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00039 1.3E-08 67.9 2.0 40 34-81 48-88 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00042 1.4E-08 69.4 0.9 42 33-81 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.9 0.0084 2.9E-07 57.4 1.8 42 32-81 14-55 (445)
8 3v7d_B Cell division control p 94.4 0.0049 1.7E-07 58.9 -1.1 43 31-81 9-51 (464)
9 3l2o_B F-box only protein 4; s 92.5 0.015 5E-07 57.2 -1.3 39 35-81 3-41 (312)
10 3ogk_B Coronatine-insensitive 92.2 0.028 9.5E-07 56.3 0.2 37 37-80 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.0 0.026 9.1E-07 54.0 -1.4 42 32-81 6-51 (435)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=7.7e-91 Score=672.60 Aligned_cols=242 Identities=40% Similarity=0.718 Sum_probs=186.4
Q ss_pred cccCCCCCceEEEEEEEeecC------ceEEEEeeccccccCCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeee
Q 016472 98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK 171 (389)
Q Consensus 98 LkqPgPr~~~iQC~I~R~k~~------~tY~LyL~l~~~~~e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGK 171 (389)
|+||+|+|+++||+|+|||+| ++|||||+ .++++|||||||+|+++|+||+||+|++||||++++||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK 103 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 103 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence 999999999999999999998 59999995 4788999999999999999999999999999999999999
Q ss_pred eeccceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCccccc
Q 016472 172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE 251 (389)
Q Consensus 172 LRSNflGTkF~iYD~g~p~~~a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~ 251 (389)
|||||+||+|+|||+|.+++. ..||+++.+++|||+|+||+||||++|||+|+|+||.+. +
T Consensus 104 LrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~----~ 164 (276)
T 2fim_A 104 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----A 164 (276)
T ss_dssp EEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC----T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----c
Confidence 999999999999999954321 135667788999999999999999999999999998542 2
Q ss_pred CCCCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceecccccee
Q 016472 252 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF 331 (389)
Q Consensus 252 ~gg~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNF 331 (389)
+|+..|.+. . ...++++.++++...+++++|+||+|+|||++|||||||+||||+||||||
T Consensus 165 ~~~~~~~~p----~---------------~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNF 225 (276)
T 2fim_A 165 ENERVPIRP----R---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 225 (276)
T ss_dssp TSCBCCCCC----S---------------STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCE
T ss_pred CCCEecccC----C---------------CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceE
Confidence 333333211 0 011112222233456789999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016472 332 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389 (389)
Q Consensus 332 QLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE 389 (389)
|||+++ ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 226 QLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 226 QIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp EEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred EEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 999874 678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=4e-88 Score=644.49 Aligned_cols=236 Identities=40% Similarity=0.704 Sum_probs=191.9
Q ss_pred cccCCCCCceEEEEEEEeecC------ceEEEEeeccccccCCCeEEEEEEecccCCcceEEEEecCCCCCCCCCceeee
Q 016472 98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK 171 (389)
Q Consensus 98 LkqPgPr~~~iQC~I~R~k~~------~tY~LyL~l~~~~~e~gkfLLaArK~rr~~tsnYiISld~~dlSr~s~~yvGK 171 (389)
|+||||+|++|||+|+|||+| ++||||++ .++++|||||||+++++|||||||+|++||||++++||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 999999999999999999998 58999985 4567899999999999999999999999999999999999
Q ss_pred eeccceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCccccc
Q 016472 172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE 251 (389)
Q Consensus 172 LRSNflGTkF~iYD~g~p~~~a~~~~~rs~~~~~~k~vsp~~p~g~~ela~V~Ye~NVLg~rGPRrM~~~m~~Ip~s~i~ 251 (389)
|||||+||+|+|||+|++++. ..+|+++.+++|||+|+||+||||++|||+|+|+||.+. +
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~----~ 140 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----A 140 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC----T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----c
Confidence 999999999999999954331 135667788999999999999999999999999998542 2
Q ss_pred CCCCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceecccccee
Q 016472 252 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF 331 (389)
Q Consensus 252 ~gg~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNF 331 (389)
+|+..|.+. . ...++.+.+.++...+++++|+||+|+|||++|||||||+||||+||||||
T Consensus 141 ~~~~~~~~p----~---------------~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNF 201 (246)
T 3c5n_A 141 ENERVPIRP----R---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 201 (246)
T ss_dssp TSCBCCCCC----S---------------STTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCE
T ss_pred CCCEeeccC----C---------------CccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceE
Confidence 343333211 0 011112222233456789999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 016472 332 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 383 (389)
Q Consensus 332 QLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFD 383 (389)
|||+++ ++++||||||||++|+|||||+|||||||||||||||||
T Consensus 202 qLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 202 QIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp EEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred EEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999874 678999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.13 E-value=6e-07 Score=64.98 Aligned_cols=40 Identities=30% Similarity=0.744 Sum_probs=33.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016472 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (389)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (389)
++..|+.||+|+|..|+.++ | .++++.||.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 4 4788999999999999875
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.92 E-value=0.00021 Score=66.65 Aligned_cols=40 Identities=30% Similarity=0.745 Sum_probs=34.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016472 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (389)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (389)
++..|+.||+|+|..|+..+ |. +++++||.||++|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~-~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CH-HHHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CH-HHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 33 378999999999999973
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.79 E-value=0.00039 Score=67.86 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCCCcccee-eecccchhHHHHhHh
Q 016472 34 TCCWANLPQELLREILAKIEAADSAWPSRRSVV-ACAGVCRSWRQITKE 81 (389)
Q Consensus 34 ~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv-~ca~vc~~wr~~~~~ 81 (389)
......||+|||.+|+.|| |. ++++ .|+.|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 76 5677 999999999998753
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.62 E-value=0.00042 Score=69.40 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
+...|+.||+|+|..|+.+| |..+++++|+.||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 8788999999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.88 E-value=0.0084 Score=57.39 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=35.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 32 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
....-++.||+|||..|+..|+ -+++..||.||+.|+.++.+
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~--------~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLE--------PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSC--------HHHHHHHTTSCHHHHHHHTC
T ss_pred ccCChhHHCCHHHHHHHHHhCC--------HHHHHHHHHHhHHHHhhcCc
Confidence 4456789999999999999993 36689999999999988753
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.38 E-value=0.0049 Score=58.90 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 31 ~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
..+..-++.||+|+|..|+..| |. ++++.|+.||+.|+.++.+
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 3556678899999999999999 43 5889999999999998764
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.51 E-value=0.015 Score=57.23 Aligned_cols=39 Identities=13% Similarity=0.314 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
+-|.+||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999943 5689999999999999865
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.18 E-value=0.028 Score=56.26 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016472 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (389)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (389)
...||+|+|..|+.+| +..+++++|+.||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4589999999999999 567889999999999999853
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.03 E-value=0.026 Score=53.99 Aligned_cols=42 Identities=26% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHH----HHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016472 32 SPTCCWANLPQE----LLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (389)
Q Consensus 32 ~~~~~w~~~~~e----ll~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (389)
.+..-.+.||+| ||..|+..|+. +++..||.|||.|+.++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455667889999 99999999954 6788999999999988753
Done!