Query 016473
Match_columns 389
No_of_seqs 203 out of 1277
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x93_A Hypothetical protein HP 16.0 39 0.0013 23.1 0.5 29 3-31 7-37 (55)
2 2bn5_A PSI; nuclear protein, s 12.6 51 0.0018 20.6 0.3 14 151-164 2-15 (33)
3 2wp7_A PPPDE peptidase domain- 10.4 95 0.0032 26.8 1.4 30 9-39 88-117 (168)
4 2k1o_A Putative; repressor, tr 9.7 72 0.0025 22.6 0.3 29 3-31 21-51 (66)
5 3h90_A Ferrous-iron efflux pum 9.3 2.4E+02 0.0082 25.6 3.9 50 78-127 108-157 (283)
6 2i68_A Protein EMRE; transmemb 7.0 6.3E+02 0.022 20.4 5.1 33 33-65 46-78 (137)
7 1bh9_B TAFII28; histone fold, 6.9 2.7E+02 0.0092 21.2 2.5 47 4-58 1-47 (89)
8 2ki0_A DS119; beta-alpha-beta, 5.3 2.1E+02 0.0073 17.5 0.8 10 5-14 13-22 (36)
9 2jvw_A Uncharacterized protein 5.1 2E+02 0.0067 22.0 0.7 20 364-386 27-46 (88)
10 1ter_A Tertiapin; toxin; NMR { 5.0 49 0.0017 19.0 -2.0 10 301-310 6-15 (26)
No 1
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=16.04 E-value=39 Score=23.13 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=21.2
Q ss_pred ccCHhhHhhhhccccccCCc--chhhhhhhh
Q 016473 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQ 31 (389)
Q Consensus 3 yis~~~l~~l~~yky~~~d~--S~l~~~~~~ 31 (389)
|+|+|+-+.|++--+.-.+. |++-+|+++
T Consensus 7 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 37 (55)
T 1x93_A 7 YFSDEQYQKLEKMANEEEESVGSYIKRYILK 37 (55)
T ss_dssp EECHHHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998877755442 666666654
No 2
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=12.59 E-value=51 Score=20.62 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhce
Q 016473 151 PFFGATWEHYFTNT 164 (389)
Q Consensus 151 ~f~~~~we~y~tg~ 164 (389)
+.|.++|-||+...
T Consensus 2 ~DYSaQW~eYYrsi 15 (33)
T 2bn5_A 2 ADYSAQWAEYYRSV 15 (33)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHc
Confidence 35889999998753
No 3
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=10.43 E-value=95 Score=26.77 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=22.3
Q ss_pred HhhhhccccccCCcchhhhhhhhHHHHHHHh
Q 016473 9 VAALQRYKYSGVDNSYLAKYVLQPFWSRFVN 39 (389)
Q Consensus 9 l~~l~~yky~~~d~S~l~~~~~~p~~~~~~~ 39 (389)
++.|++=+|.+.+..++++.. +.|.+.+.+
T Consensus 88 l~~l~~~~~~g~~Y~Ll~~NC-NhFs~~l~~ 117 (168)
T 2wp7_A 88 LSSLGESLFRGEAYNLFEHNC-NTFSNEVAQ 117 (168)
T ss_dssp HHHHHTTTCSGGGCBTTTBSH-HHHHHHHHH
T ss_pred HHHhhhccCCcccCchhhhcc-chhHHHHHH
Confidence 466676669999999999886 556666654
No 4
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=9.67 E-value=72 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=20.6
Q ss_pred ccCHhhHhhhhccccccCCc--chhhhhhhh
Q 016473 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQ 31 (389)
Q Consensus 3 yis~~~l~~l~~yky~~~d~--S~l~~~~~~ 31 (389)
|+|+|+-+.|++--+.-.+. |++-+|+++
T Consensus 21 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 51 (66)
T 2k1o_A 21 YLSKEEHDVLRRLADEEVESVNSFVKRHILK 51 (66)
T ss_dssp EEEHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999998888877765553 566666544
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=9.31 E-value=2.4e+02 Score=25.59 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhcHHHHHhcCCCCcccchhhhchhhHHHHHH
Q 016473 78 RWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFE 127 (389)
Q Consensus 78 ~w~~~~~~~~~~~~~~lD~~DG~~ARr~~~~SplG~~~Dh~~D~~~~~~~ 127 (389)
.|....+.+.+.+...+=-.-.+.+||+++..-.++..|+..|.++....
T Consensus 108 ~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~v 157 (283)
T 3h90_A 108 GVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAI 157 (283)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34344454544444443334456788888766679999999999876543
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.98 E-value=6.3e+02 Score=20.45 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=17.5
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHH
Q 016473 33 FWSRFVNFFPLWMPPNMITLTGFIFLVTSAVIG 65 (389)
Q Consensus 33 ~~~~~~~~~p~~~aPN~iTl~g~~~~~~~~~~~ 65 (389)
+|.+..+..|...+--..|-+|.+...+...++
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~ 78 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF 78 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888776665666776666554444
No 7
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=6.90 E-value=2.7e+02 Score=21.23 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=31.8
Q ss_pred cCHhhHhhhhccccccCCcchhhhhhhhHHHHHHHhhCCCCCCccHHHHHHHHHH
Q 016473 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFL 58 (389)
Q Consensus 4 is~~~l~~l~~yky~~~d~S~l~~~~~~p~~~~~~~~~p~~~aPN~iTl~g~~~~ 58 (389)
.|+||+++-+.|+=++-.++-+-+ +.+.+. -..+.+|++..+|.+.=
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKr-----l~~~~~---~~~v~~~v~i~v~glaK 47 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKR-----LIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHH-----HHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHc---CCCCCccHHHHHHHHHH
Confidence 478999999999887666555443 334443 45678888877665544
No 8
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=5.27 E-value=2.1e+02 Score=17.52 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=7.7
Q ss_pred CHhhHhhhhc
Q 016473 5 GAHGVAALQR 14 (389)
Q Consensus 5 s~~~l~~l~~ 14 (389)
+||+++.||+
T Consensus 13 tpeelkklke 22 (36)
T 2ki0_A 13 TPEELKKLKE 22 (36)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6788888876
No 9
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=5.12 E-value=2e+02 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.610 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhCcceeeecc
Q 016473 364 HFATSVIHEITTALGIYCFRITR 386 (389)
Q Consensus 364 hy~~~VI~qIc~~L~I~cFsIk~ 386 (389)
||+.. ++.+.++|+||+-.|
T Consensus 27 ~YGW~---~L~~~i~I~CF~~~P 46 (88)
T 2jvw_A 27 HYGWE---ELSYMVNINCFKKDP 46 (88)
T ss_dssp HTCHH---HHHHHTTSSSTTSSC
T ss_pred HhCHH---HHHhhcccccCCCCC
Confidence 45543 577889999998755
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=5.04 E-value=49 Score=18.99 Aligned_cols=10 Identities=40% Similarity=0.993 Sum_probs=7.2
Q ss_pred HHHHHHhhcC
Q 016473 301 GRMILAHLCD 310 (389)
Q Consensus 301 ~rLIvahm~k 310 (389)
.|+|+-|||-
T Consensus 6 nriiiphmcw 15 (26)
T 1ter_A 6 NRIIIPHMCW 15 (26)
T ss_dssp TSSSCCHHHH
T ss_pred CcEechhHHH
Confidence 4677888873
Done!