Query 016473
Match_columns 389
No_of_seqs 203 out of 1277
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 14:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qr0a1 d.150.1.1 (A:1-101) 4' 8.2 44 0.0032 23.9 0.5 31 2-32 22-53 (101)
2 d1bh9b_ a.22.1.3 (B:) TAF(II)2 6.9 1.3E+02 0.0094 21.3 2.5 47 5-59 2-48 (89)
3 d2a5yb1 a.4.5.80 (B:386-543) C 6.3 51 0.0037 24.7 -0.1 25 91-115 35-59 (158)
4 d1x4pa1 a.217.1.1 (A:8-60) Arg 6.1 1.4E+02 0.0099 18.8 2.0 26 3-28 15-43 (53)
5 d2g3qa1 a.5.2.1 (A:1339-1381) 5.6 77 0.0056 19.4 0.5 18 1-18 14-31 (43)
6 d1iyjb2 a.171.1.1 (B:2761-2897 5.0 71 0.0052 24.7 0.0 21 1-21 88-108 (137)
7 d1qf6a1 c.51.1.1 (A:533-642) T 4.5 65 0.0048 23.2 -0.6 8 42-49 2-9 (110)
8 d1h4ra3 d.15.1.4 (A:20-103) Me 4.1 2E+02 0.015 19.6 2.0 14 367-380 25-38 (84)
9 d1x93a1 a.43.1.3 (A:31-73) Unc 4.0 1.4E+02 0.01 17.5 0.8 28 3-31 7-37 (43)
10 d2choa3 d.92.2.3 (A:5-126) Glu 3.8 2.1E+02 0.016 20.1 2.1 24 364-387 97-120 (122)
No 1
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=8.22 E-value=44 Score=23.94 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=21.6
Q ss_pred cccCHhhHhhhhcccccc-CCcchhhhhhhhH
Q 016473 2 GYIGAHGVAALQRYKYSG-VDNSYLAKYVLQP 32 (389)
Q Consensus 2 ~yis~~~l~~l~~yky~~-~d~S~l~~~~~~p 32 (389)
.++|+++.++.++|++.. ...+++.+.+++-
T Consensus 22 ~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~ 53 (101)
T d1qr0a1 22 TFISPEKREKCRRFYHKEDAHRTLLGDVLVRS 53 (101)
T ss_dssp TTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 579999999999999853 3445555554443
No 2
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.89 E-value=1.3e+02 Score=21.30 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=32.3
Q ss_pred CHhhHhhhhccccccCCcchhhhhhhhHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q 016473 5 GAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFLV 59 (389)
Q Consensus 5 s~~~l~~l~~yky~~~d~S~l~~~~~~p~~~~~~~~~p~~~aPN~iTl~g~~~~~ 59 (389)
||||+++.+.|+=++-.++-+-+ +.+.+. -..++||+++.++-+.=+
T Consensus 2 s~eQ~~RyE~fRRs~~~K~~vkr-----l~~~~~---g~sv~~~v~i~v~giaKv 48 (89)
T d1bh9b_ 2 SEEQLNRYEMYRRSAFPKAAIKR-----LIQSIT---GTSVSQNVVIAMSGISKV 48 (89)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHH-----HHHHHH---SSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHH-----HHHHHc---CCCCChhHHHHHHHHHHH
Confidence 78999999999988766555433 333333 467889988777655543
No 3
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.30 E-value=51 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHhhhhcHHHHHhcCCCCcccchh
Q 016473 91 YQTFDAVDGKQARRTNSSSPLGELF 115 (389)
Q Consensus 91 ~~~lD~~DG~~ARr~~~~SplG~~~ 115 (389)
+.-=|.+|-+.|.|.+.-|..|+++
T Consensus 35 snee~qlddevadrlkrlskrgall 59 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALL 59 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCS
T ss_pred CChHhhhhHHHHHHHHHHHhccchh
Confidence 4466899999999999889988854
No 4
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.12 E-value=1.4e+02 Score=18.75 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.9
Q ss_pred ccCHhhHhhhhc---cccccCCcchhhhh
Q 016473 3 YIGAHGVAALQR---YKYSGVDNSYLAKY 28 (389)
Q Consensus 3 yis~~~l~~l~~---yky~~~d~S~l~~~ 28 (389)
-+||.+...+|+ |=+=+.++|+-++|
T Consensus 15 ~LspkeR~~~k~~P~yWFLsde~SlEyKY 43 (53)
T d1x4pa1 15 SLSPKERTLLKEDPAYWFLSDENSLEYKY 43 (53)
T ss_dssp CSCHHHHHHHHHSGGGCTTTCCSSSHHHH
T ss_pred CCCHHHHHHhhcCCCeEEeecccchhHHH
Confidence 467887777765 88889999999887
No 5
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=5.64 E-value=77 Score=19.45 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.1
Q ss_pred CcccCHhhHhhhhccccc
Q 016473 1 MGYIGAHGVAALQRYKYS 18 (389)
Q Consensus 1 ~~yis~~~l~~l~~yky~ 18 (389)
|+|=-+++.+.|++++++
T Consensus 14 MGF~e~~A~~AL~k~~wn 31 (43)
T d2g3qa1 14 MGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp TTSCHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHcCCC
Confidence 777788889999998875
No 6
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.96 E-value=71 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CcccCHhhHhhhhccccccCC
Q 016473 1 MGYIGAHGVAALQRYKYSGVD 21 (389)
Q Consensus 1 ~~yis~~~l~~l~~yky~~~d 21 (389)
|.++|++|++.|.+|+=+-.|
T Consensus 88 e~~lS~eQl~al~~yq~~l~e 108 (137)
T d1iyjb2 88 ETCFSEEQLRALNNYRQMLSD 108 (137)
T ss_dssp ---------------------
T ss_pred HHHcCHHHHHHHHHHHHHHHH
Confidence 457999999999999865443
No 7
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.48 E-value=65 Score=23.15 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=3.8
Q ss_pred CCCCCccH
Q 016473 42 PLWMPPNM 49 (389)
Q Consensus 42 p~~~aPN~ 49 (389)
|.|+||.+
T Consensus 2 P~~laP~Q 9 (110)
T d1qf6a1 2 PTWLAPVQ 9 (110)
T ss_dssp CTTTCSSC
T ss_pred CCCcCCce
Confidence 44444444
No 8
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=2e+02 Score=19.64 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhCcc
Q 016473 367 TSVIHEITTALGIY 380 (389)
Q Consensus 367 ~~VI~qIc~~L~I~ 380 (389)
-.+.+++|+||||.
T Consensus 25 ~~L~d~Vc~~L~L~ 38 (84)
T d1h4ra3 25 KDLFDLVCRTLGLR 38 (84)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCc
Confidence 35678888888874
No 9
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=3.96 E-value=1.4e+02 Score=17.50 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=16.6
Q ss_pred ccCHhhHhhhhcccc---ccCCcchhhhhhhh
Q 016473 3 YIGAHGVAALQRYKY---SGVDNSYLAKYVLQ 31 (389)
Q Consensus 3 yis~~~l~~l~~yky---~~~d~S~l~~~~~~ 31 (389)
|.|+||-+.|++-.- .+.+ |.+.+|+++
T Consensus 7 yfsdeqyqklekmaneeeesvg-syikryilk 37 (43)
T d1x93a1 7 YFSDEQYQKLEKMANEEEESVG-SYIKRYILK 37 (43)
T ss_dssp EECHHHHHHHHHHHHHTTSCTT-HHHHHHHHH
T ss_pred EecHHHHHHHHHHhhhhHHHHH-HHHHHHHHH
Confidence 678888887776432 2222 555566554
No 10
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.83 E-value=2.1e+02 Score=20.07 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhCcceeeeccC
Q 016473 364 HFATSVIHEITTALGIYCFRITRK 387 (389)
Q Consensus 364 hy~~~VI~qIc~~L~I~cFsIk~k 387 (389)
.|+....+|+.+--+|+|..|+-.
T Consensus 97 ~yg~qTL~QLi~~~~ip~~~I~D~ 120 (122)
T d2choa3 97 YYALQTFAQLLKDGKLPEVEIKDY 120 (122)
T ss_dssp HHHHHHHHHHCBTTEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCccceEEEec
Confidence 466788888888889999999654
Done!