BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>016474
MWRTKLCQPVRTIFTKTPSPPPRHHYHRYQRPLIPLSVSLAKTVTCIRTRDSHSYSSSIL
NEQIFHFDFSSSLVAHCITSASSAEPQVVVDWNDAVSCSEVGDGANGSLEEEEEDPRTNI
PVKAYFFSTSVDLRGLVDQNRQNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASI
SGSDCCFMVVFQYGSIVLFNVSEPEYEVIEKQTLSTWMQGGLDHIMLQFLNIDGIRIIGS
VLGQSIALDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKL
GLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDF
LEWLIIILISAEILISLYDLFQRTASTLH

High Scoring Gene Products

Symbol, full name Information P value
AT5G13610 protein from Arabidopsis thaliana 1.4e-80
RRG
AT1G69380
protein from Arabidopsis thaliana 1.2e-73
MCA2525
Putative uncharacterized protein
protein from Methylococcus capsulatus str. Bath 1.4e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016474
        (389 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173214 - symbol:AT5G13610 "AT5G13610" species...   809  1.4e-80   1
TAIR|locus:2007161 - symbol:RRG "AT1G69380" species:3702 ...   564  1.2e-73   2
UNIPROTKB|Q604L4 - symbol:MCA2525 "Putative uncharacteriz...   135  1.4e-07   2


>TAIR|locus:2173214 [details] [associations]
            symbol:AT5G13610 "AT5G13610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002688 EMBL:AB006704 InterPro:IPR003734
            PANTHER:PTHR16255 Pfam:PF02582 EMBL:AY127015 EMBL:BT000617
            IPI:IPI00524379 RefSeq:NP_196865.1 UniGene:At.32045 PRIDE:Q9FNB2
            EnsemblPlants:AT5G13610.1 GeneID:831205 KEGG:ath:AT5G13610
            TAIR:At5g13610 InParanoid:Q9FNB2 OMA:VEKHASG PhylomeDB:Q9FNB2
            ProtClustDB:CLSN2687030 Genevestigator:Q9FNB2 Uniprot:Q9FNB2
        Length = 402

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 185/320 (57%), Positives = 217/320 (67%)

Query:    56 SSSILNEQIFHFDFSSSLVAHCITS-ASSAEPQVVVDWNDAVSCSEVGDGANGSLEEEEE 114
             +S I + Q F   F+   ++   T+  +SA+PQ + + N   +  EV +  +  LE+E  
Sbjct:    61 NSPIYDFQGFRNLFTERAISSSTTTPVASAQPQQLQNQNQHPA--EVDEEISMGLEDEA- 117

Query:   115 DPRTNIPVKAYFFSTSVDLRGLVDQNRQNFIPPTSRMTNYVVLKFXXXXXXXXXXXXXXX 174
               + +IPV+AYFFSTSVDLR L++QN+QNFIPPTSRMTNYVVLKF               
Sbjct:   118 --KLSIPVRAYFFSTSVDLRSLIEQNKQNFIPPTSRMTNYVVLKFGNHSDPTDTTRGRIS 175

Query:   175 XXXXXIS-----GSDCCFMV----VFQYGSIV-------LFNVSEPEYEVIEKQTLSTWM 218
                         GS   F V    V +Y  +V       L  + + EYEV E   L TWM
Sbjct:   176 GSESIYMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWM 235

Query:   219 QGGLDHIMLQFLNIDGIRIIGSVLGQSIALDYYVRQVDGMVAEFTDINRGMEKTGTFTME 278
             + G D I LQFLN DGIR IG VLGQSIALDYY RQVDGMVAEFT+INR +E TGTFTM+
Sbjct:   236 EVGRDFIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMK 295

Query:   279 SKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFK 338
              KKLFQLVGKAN  LADVILKLGLFERSDIAWKDAKY QIWE+LRDEFELTQ FA+LD+K
Sbjct:   296 RKKLFQLVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYK 355

Query:   339 LKFVEHNIRFLQEILQNRKS 358
             LKFVEHN+RFLQEILQNRKS
Sbjct:   356 LKFVEHNVRFLQEILQNRKS 375


>TAIR|locus:2007161 [details] [associations]
            symbol:RRG "AT1G69380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0010082 "regulation of root
            meristem growth" evidence=IMP] [GO:0032875 "regulation of DNA
            endoreduplication" evidence=IMP] [GO:0051302 "regulation of cell
            division" evidence=IMP] [GO:0009560 "embryo sac egg cell
            differentiation" evidence=RCA] EMBL:CP002684 GO:GO:0005739
            EMBL:AC018364 EMBL:AC073178 GO:GO:0051302 GO:GO:0032875
            GO:GO:0010082 InterPro:IPR003734 PANTHER:PTHR16255 Pfam:PF02582
            UniGene:At.24346 UniGene:At.70352 IPI:IPI00532604
            RefSeq:NP_564963.1 PRIDE:Q9C565 EnsemblPlants:AT1G69380.1
            GeneID:843270 KEGG:ath:AT1G69380 TAIR:At1g69380 InParanoid:Q9C565
            OMA:AWREARY PhylomeDB:Q9C565 ProtClustDB:CLSN2689102
            Genevestigator:Q9C565 Uniprot:Q9C565
        Length = 373

 Score = 564 (203.6 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
 Identities = 110/171 (64%), Positives = 141/171 (82%)

Query:   189 VVFQYGSIVLFNVSEPEYEVIEKQTLSTWMQGGLDHIMLQFLNIDGIRIIGSVLGQSIAL 248
             +V ++ S +L  + + +Y V EK  L   M+GG D+I+L+ L+ + IRIIGSVLGQSIAL
Sbjct:   173 IVRRHASGLLTEMRKDDYAVKEKPLLIEEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIAL 232

Query:   249 DYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDI 308
             DY V QV+ +V EF DINR M KTGTFTM  KKLFQLVGKANSN+ADVILK+GLFERS+I
Sbjct:   233 DYSVSQVNKLVEEFADINRSMAKTGTFTMTRKKLFQLVGKANSNIADVILKVGLFERSEI 292

Query:   309 AWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSD 359
             AW++A+YAQI+EYLR+E+E++QRF  LD+KLKF+EHNI FLQE++QNR+SD
Sbjct:   293 AWREARYAQIYEYLREEYEISQRFGDLDYKLKFIEHNIHFLQEVMQNRQSD 343

 Score = 198 (74.8 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
 Identities = 50/126 (39%), Positives = 66/126 (52%)

Query:    83 SAEPQVVVDWNDAVSCSEVGDG-ANGSLEEEEEDPRTNIPVKAYFFSTSVDLRGLVDQNR 141
             SA P  +  +N+  S S   D   N     E E+    IP+KAYF STS+DL+ +  +N 
Sbjct:    50 SAFPSPISIYNND-SDSGSNDAYQNYEFGTEAEEALGKIPIKAYFLSTSIDLKAMQAENL 108

Query:   142 QNFIPPTSRMTNYVVLKFXXXXXXXXXXXXXXXXXXXXISGSDCCFMVVFQYGSIVLFNV 201
              N +PPTSR TNY+ LKF                     S S+C FMVVFQYGS +LFNV
Sbjct:   109 CNVVPPTSRSTNYIALKFSDFTPSGIYSLDERE------SVSNCKFMVVFQYGSAILFNV 162

Query:   202 SEPEYE 207
              + + +
Sbjct:   163 DDNDVD 168


>UNIPROTKB|Q604L4 [details] [associations]
            symbol:MCA2525 "Putative uncharacterized protein"
            species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:AE017282 GenomeReviews:AE017282_GR InterPro:IPR003734
            PANTHER:PTHR16255 Pfam:PF02582 RefSeq:YP_114936.1 GeneID:3103346
            KEGG:mca:MCA2525 PATRIC:22608914 HOGENOM:HOG000003651 OMA:INARINV
            ProtClustDB:CLSK834311 Uniprot:Q604L4
        Length = 262

 Score = 135 (52.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 37/166 (22%), Positives = 82/166 (49%)

Query:   197 VLFN-VSEPEYEVIEKQTLSTWMQGGLD---HIMLQFLNIDGIRIIGSVLGQSIALDYYV 252
             V+ N ++EPE E ++   +   +   LD    ++L+  ++  ++++  VL +S  L YY 
Sbjct:    74 VVHNPLAEPELEEVDL-LIHPELPERLDSAGRLVLREASVARLQVVAHVLAKSCVLSYYE 132

Query:   253 RQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKD 312
             R V         I + + +        +++   +GKA S +  ++ ++ + E+ +I W D
Sbjct:   133 RNVAEEFDRIEQIAQRLTRAAGPPRGKREILNEIGKALSIMGRMVGRVEVAEKPEIVWDD 192

Query:   313 AKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKS 358
              +  Q++E L  E+EL  R  +L  KL+ +        +++ +R++
Sbjct:   193 PQLDQLYERLATEYELRDRDRALSRKLELISRTAETYLDLVNHRQA 238

 Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query:   187 FMVVFQYGSIVLFNVS-EPEYEVIE 210
             + + F++G +VL  +S E E EV++
Sbjct:    45 YRITFRFGVVVLVGLSAEQEAEVLQ 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      389       337   0.00093  116 3  11 22  0.49    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  234 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.41u 0.09s 27.50t   Elapsed:  00:00:03
  Total cpu time:  27.41u 0.09s 27.50t   Elapsed:  00:00:03
  Start:  Sat May 11 09:43:31 2013   End:  Sat May 11 09:43:34 2013

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