BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016474
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RMD1 PE=1 SV=1
Length = 430
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 79/152 (51%)
Query: 238 IGSVLGQSIALDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVI 297
I + QS+ + + VD + + DI + + +G +M + + + +G+ ++
Sbjct: 279 ISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYSGKVSMSKEDIMKSIGELFILRININ 338
Query: 298 LKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRK 357
L + + +I W + + I++ R E+ QR + L+ +L+ + ++ L+E L +
Sbjct: 339 LHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVSLLNQRLEVISDLLQMLKEQLGHSH 398
Query: 358 SDFLEWLIIILISAEILISLYDLFQRTASTLH 389
++LE+++I+L+ E+LIS+ ++ ++ H
Sbjct: 399 EEYLEFIVILLVGVEVLISVINIVVDMLASQH 430
>sp|Q05648|YD282_YEAST Uncharacterized protein YDR282C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDR282C PE=3 SV=1
Length = 414
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 281 KLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLK 340
+LF + GK N L L E D+ W + + +I++ + ++ R L+ KL
Sbjct: 302 RLFLIRGKLN-------LYSELIETPDLYWSEPQLEEIFKNVSRYLDIGPRINILNSKLD 354
Query: 341 FVEHNIRFLQEILQNRKSDFLEWLIIILISAEILISLYDLFQRTAS 386
+ R L +L R S FLEW+II LI+ E+ +Y +Q+ +S
Sbjct: 355 YSTDECRALISLLNERNSTFLEWIIIYLIAFELCFEIYHFYQKYSS 400
>sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=sif2 PE=1 SV=2
Length = 382
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 72/143 (50%)
Query: 238 IGSVLGQSIALDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVI 297
I + QS+ + + V+ + D + + +TG ++ +++ VG+ ++
Sbjct: 232 ISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFILRININ 291
Query: 298 LKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRK 357
L+ + + ++ W + + I+ R E+ QR A L+ +++ + + L+E + +
Sbjct: 292 LQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITHTH 351
Query: 358 SDFLEWLIIILISAEILISLYDL 380
+ LEW+++IL+ +LI+L+ +
Sbjct: 352 DESLEWIVVILMGLLVLIALFSI 374
>sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus
musculus GN=Rmnd1 PE=2 SV=1
Length = 450
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 29/248 (11%)
Query: 163 SNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFNVSEPEY----EVIEKQ------ 212
S P + L G +S D + +F+ G+ V +NV E +V+E+
Sbjct: 202 SLPRDAANILVMGVESSAKEGDPGTIFLFREGAAVFWNVKEKTMKHVMQVLERHETQPYE 261
Query: 213 -TLSTWMQGGLDHIMLQF--------------LNIDGIRI----IGSVLGQSIALDYYVR 253
L W L++I + L++D + + L S+ L +
Sbjct: 262 VALVHWENEELNYIKTEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA 321
Query: 254 QVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDA 313
+D + I ++ + K++ Q +G+ + + L D W A
Sbjct: 322 TLDKFIESIQSIPEALKAGKKVKLSHKEVMQKMGELFALRHRINLSSDFLITPDFYWDRA 381
Query: 314 KYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIILISAEI 373
++++ +T+R ++ KL+ ++ L +++ LEW+I+ILI+ E+
Sbjct: 382 NLEELYDKTCQFLSITRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV 441
Query: 374 LISLYDLF 381
+ L +F
Sbjct: 442 MFELGRVF 449
>sp|A1USI9|FABH_BARBK 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=fabH PE=3
SV=1
Length = 324
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 89 VVDWNDAVSCSEVGDGANGSLEEEEEDPRTNIPVKAYFFSTSVDLRGL-VDQNRQNFIPP 147
++DW D +C GDGA ++ E E N+ + ST + G +D+ + P
Sbjct: 146 ILDWKDRTTCVLFGDGAGAAILEARE-VEGNVAIDRGILSTKLRSNGAHIDKLYADGGPS 204
Query: 148 TSRMTNYVVLK 158
T++ Y+ +K
Sbjct: 205 TTQTIGYLRMK 215
>sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo
abelii GN=RMND1 PE=2 SV=1
Length = 449
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/248 (17%), Positives = 93/248 (37%), Gaps = 29/248 (11%)
Query: 163 SNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFNVSEPEYE----VIEKQ------ 212
S P + L G S D + F+ G+ V +NV + + V+EK
Sbjct: 201 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE 260
Query: 213 -TLSTWMQGGLDHIMLQF--------------LNIDGIRI----IGSVLGQSIALDYYVR 253
L W L++I ++ L++D + + L S+ L +
Sbjct: 261 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA 320
Query: 254 QVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDA 313
+D + I ++ + +++ Q +G+ + + L D W
Sbjct: 321 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE 380
Query: 314 KYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIILISAEI 373
+++ + +R ++ KL+ ++ L +++ LEW+I+ILI+ E+
Sbjct: 381 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMEPTDLMRNHLNEKRALRLEWMIVILITIEV 440
Query: 374 LISLYDLF 381
+ L +F
Sbjct: 441 MFELGRVF 448
>sp|A9NFF0|FABH_ACHLI 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Acholeplasma
laidlawii (strain PG-8A) GN=fabH PE=3 SV=1
Length = 310
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 55 YSSSILNEQIFHFDFSSSLVAHCITSASSAEPQVVVDWNDAVSCSEVGDGANGSLEEEEE 114
Y+ I I ++ S+LV S ++DW D + GD A ++ E +
Sbjct: 121 YAVEIAASMISSGNYKSALVI------GSEHMSSILDWEDRSTAILFGDAAGAAIIEVSD 174
Query: 115 DPRTNIPVKAYFFSTSVDLRGLVDQNRQNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQ 174
+P+ N AYF++ S RG D +I P +M V KF P + L +
Sbjct: 175 NPKDN----AYFWNGS---RG--DDTGILWIDPKVKMAGREVYKFAVDIMPKAIHKVLEK 225
Query: 175 GTGASISGSDCCFMVVFQYGSIVLFNVSEPEYEVIEKQTLSTWMQGGLDHIMLQFL 230
A ++ D +++ Q ++ +V++ IE+ ++ G + FL
Sbjct: 226 ---AGLTIDDIDYIIPHQANYRIIQSVAKDMNLPIERFLMNLEEYGNTSAASIPFL 278
>sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo
sapiens GN=RMND1 PE=1 SV=2
Length = 449
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/248 (17%), Positives = 93/248 (37%), Gaps = 29/248 (11%)
Query: 163 SNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFNVSEPEYE----VIEKQ------ 212
S P + L G S D + F+ G+ V +NV + + V+EK
Sbjct: 201 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE 260
Query: 213 -TLSTWMQGGLDHIMLQF--------------LNIDGIRI----IGSVLGQSIALDYYVR 253
L W L++I ++ L++D + + L S+ L +
Sbjct: 261 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA 320
Query: 254 QVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDA 313
+D + I ++ + +++ Q +G+ + + L D W
Sbjct: 321 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE 380
Query: 314 KYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIILISAEI 373
+++ + +R ++ KL+ ++ L +++ LEW+I+ILI+ E+
Sbjct: 381 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV 440
Query: 374 LISLYDLF 381
+ L +F
Sbjct: 441 MFELGRVF 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,497,754
Number of Sequences: 539616
Number of extensions: 5671612
Number of successful extensions: 15384
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15376
Number of HSP's gapped (non-prelim): 17
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)