Query 016474
Match_columns 389
No_of_seqs 194 out of 495
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 62.9 85 0.0029 29.9 12.4 24 363-386 315-338 (339)
2 1deq_A Fibrinogen (alpha chain 60.1 65 0.0022 32.3 11.0 98 248-365 58-157 (390)
3 3ghg_A Fibrinogen alpha chain; 54.9 1.1E+02 0.0038 32.0 12.0 98 247-365 54-154 (562)
4 3ck6_A Putative membrane trans 54.5 94 0.0032 27.9 10.6 32 328-359 215-246 (252)
5 2iub_A CORA, divalent cation t 41.5 2.5E+02 0.0084 27.0 11.9 19 368-386 344-362 (363)
6 3oiq_B DNA polymerase alpha ca 40.9 30 0.001 23.2 3.5 24 243-267 5-28 (36)
7 1m1j_A Fibrinogen alpha subuni 38.8 3.4E+02 0.012 28.0 12.4 99 247-365 55-155 (491)
8 2pnv_A Small conductance calci 37.2 14 0.00049 26.0 1.6 27 327-353 13-39 (43)
9 1orj_A Flagellar protein FLIS; 36.3 43 0.0015 28.4 4.8 42 313-354 80-122 (130)
10 2pnv_A Small conductance calci 34.7 44 0.0015 23.4 3.8 25 324-348 17-41 (43)
11 1uii_A Geminin; human, DNA rep 32.3 73 0.0025 25.4 5.1 52 304-355 23-78 (83)
12 3nvo_A Zinc transport protein 26.3 2.5E+02 0.0086 25.1 8.6 73 279-357 186-261 (264)
13 3efg_A Protein SLYX homolog; x 24.9 68 0.0023 24.9 3.8 32 326-357 10-41 (78)
14 3eik_A Tata-box-binding protei 24.9 1.3E+02 0.0044 27.9 6.2 57 122-203 49-106 (218)
15 1vh6_A Flagellar protein FLIS; 24.3 2.5E+02 0.0086 24.0 7.7 88 255-352 30-120 (145)
16 3hd7_A Vesicle-associated memb 23.3 2.2E+02 0.0077 22.3 6.7 34 321-354 24-57 (91)
17 1mp9_A Tata-binding protein; t 23.3 1.9E+02 0.0065 26.1 7.0 58 122-204 19-77 (198)
18 2z8u_A Tata-box-binding protei 22.9 1.3E+02 0.0045 26.9 5.8 57 122-203 110-167 (188)
19 1ais_A TBP, protein (tata-bind 22.8 1.7E+02 0.0057 26.1 6.4 57 122-203 106-163 (182)
20 2p61_A Hypothetical protein TM 22.2 3.9E+02 0.013 23.3 10.1 40 236-276 35-74 (162)
21 1rm1_A Tata-box binding protei 21.8 1.5E+02 0.0051 27.7 6.1 57 122-203 71-128 (240)
22 1ytb_A Protein (tata binding p 21.4 1.7E+02 0.0059 26.0 6.3 57 122-203 11-68 (180)
23 2z8u_A Tata-box-binding protei 21.4 1.6E+02 0.0055 26.3 6.1 57 122-203 19-76 (188)
24 1mp9_A Tata-binding protein; t 20.9 1.7E+02 0.006 26.3 6.2 57 122-203 110-167 (198)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=62.91 E-value=85 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 016474 363 WLIIILISAEILISLYDLFQRTAS 386 (389)
Q Consensus 363 WIIIiLI~vEIvl~l~ei~~r~~~ 386 (389)
|.+++.+++=+++.++=+|.|++|
T Consensus 315 y~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 315 FWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345555555566666667777777
No 2
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.11 E-value=65 Score=32.33 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhhhhhhhcccccccchhhhccccHHHHHHHHHhhcc
Q 016474 248 LDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFE 327 (389)
Q Consensus 248 L~~fE~~vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~~We~p~le~lY~~l~~~fE 327 (389)
|+-.|..+..-|+++++--..+.+. .-+--...+.+-+++..+.... .+.+..|..+.+ |
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s---~~~~~~y~~~~~~~lk~~~~q~---------------~dndn~~~e~s~--e 117 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKN---SKDSNTLTKNIVELMRGDFAKA---------------NNNDNTFKQINE--D 117 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhh---------------ccchHHHHHHHH--H
Confidence 4445566666666666655555442 2222233333333333322221 135556666655 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhHHH
Q 016474 328 LTQRFASLDFKLKFVEHNIRFLQEILQNRKS--DFLEWLI 365 (389)
Q Consensus 328 I~~R~~~LN~KL~vi~e~l~~L~e~l~~~hS--~rLEWII 365 (389)
|.+|+..|.+|++-=-..+..|+..+.++++ .|||.-|
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887665578888888776655 5788665
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.94 E-value=1.1e+02 Score=32.02 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhh-hhhhhcccccccchhhhccccHHHHHHHHHhh
Q 016474 247 ALDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNL-ADVILKLGLFERSDIAWKDAKYAQIWEYLRDE 325 (389)
Q Consensus 247 kL~~fE~~vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r-~~inl~~~lLDtPD~~We~p~le~lY~~l~~~ 325 (389)
.|...|.-+.+.|+++++--+++.+ +++++...+-.+.... .++. ..-+++..|..+.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsK------nsKdseqy~k~~~E~Lr~rq~-------------q~~dNdNtynE~S~- 113 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQK------NNKDSHSLTTNIMEILRGDFS-------------SANNRDNTYNRVSE- 113 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH------HHHHHHHHHHHHHHTTSSHHH-------------HHHHHHHHHHHTTH-
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHh------hchhHHHHHHHHHHHHHHHHH-------------hhhccchhHHHHHH-
Confidence 4677899999999999988888766 5665555443222111 1111 11134455544433
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhHHH
Q 016474 326 FELTQRFASLDFKLKFVEHNIRFLQEILQNRKS--DFLEWLI 365 (389)
Q Consensus 326 fEI~~R~~~LN~KL~vi~e~l~~L~e~l~~~hS--~rLEWII 365 (389)
||..|+..|+.|++--..++..|+..|.++++ .|||--|
T Consensus 114 -ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 -DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999988877888888888887765 5787654
No 4
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=54.46 E-value=94 Score=27.92 Aligned_cols=32 Identities=6% Similarity=0.310 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016474 328 LTQRFASLDFKLKFVEHNIRFLQEILQNRKSD 359 (389)
Q Consensus 328 I~~R~~~LN~KL~vi~e~l~~L~e~l~~~hS~ 359 (389)
+.+++..+.+-++.+.|.+..+.+.....-+.
T Consensus 215 v~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~ 246 (252)
T 3ck6_A 215 AHNNITRINETIEFYLGEVALFQDEIKHNRDE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444433
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=41.47 E-value=2.5e+02 Score=26.98 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 016474 368 LISAEILISLYDLFQRTAS 386 (389)
Q Consensus 368 LI~vEIvl~l~ei~~r~~~ 386 (389)
++++=+++.++-+|.|++|
T Consensus 344 ~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 344 AVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3333344444555555554
No 6
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=40.88 E-value=30 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 016474 243 GQSIALDYYVRQVDGMVAEFTDINR 267 (389)
Q Consensus 243 AQSVkL~~fE~~vd~~ie~~~~ip~ 267 (389)
+||+|+ +||..+..+++.+++-|.
T Consensus 5 s~~~K~-R~~nDvq~Ll~DVENSP~ 28 (36)
T 3oiq_B 5 LQSRKL-RYANDVQDLLDDVENSPV 28 (36)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSCS
T ss_pred hHHHHH-HHHhhHHHHHHHhhcCch
Confidence 689999 899999999999987653
No 7
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.84 E-value=3.4e+02 Score=27.97 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhhhhhhhcccccccchhhhccccHHHHHHHHHhhc
Q 016474 247 ALDYYVRQVDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEF 326 (389)
Q Consensus 247 kL~~fE~~vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~~We~p~le~lY~~l~~~f 326 (389)
.|...|.-+..-|+++++....+.+.-+ +--...+.+-+++..+..... +.+..|..+.+
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~---~s~~y~~~~~~~lk~~~~q~~---------------dndn~~~e~S~-- 114 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYK---TSNRVIVETINILKPGLEGAQ---------------QLDENYGHVST-- 114 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH--
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHH--
Confidence 3566788888888888887777666432 333333444333333332221 35566666665
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhHHH
Q 016474 327 ELTQRFASLDFKLKFVEHNIRFLQEILQNRKS--DFLEWLI 365 (389)
Q Consensus 327 EI~~R~~~LN~KL~vi~e~l~~L~e~l~~~hS--~rLEWII 365 (389)
||..|+..|.+|.+-=-.++.+|+..+.++++ .|||--|
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887766888888888887765 5777654
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=37.15 E-value=14 Score=25.96 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016474 327 ELTQRFASLDFKLKFVEHNIRFLQEIL 353 (389)
Q Consensus 327 EI~~R~~~LN~KL~vi~e~l~~L~e~l 353 (389)
|++.|.+.|++|+.-+..=++.|.+.+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444443
No 9
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=36.33 E-value=43 Score=28.36 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016474 313 AKYAQIWEYLRDEF-ELTQRFASLDFKLKFVEHNIRFLQEILQ 354 (389)
Q Consensus 313 p~le~lY~~l~~~f-EI~~R~~~LN~KL~vi~e~l~~L~e~l~ 354 (389)
..|.++|+.+.+.+ .++.-.+.|++=..++.++.+...+...
T Consensus 80 ~nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~lreaW~~i~~ 122 (130)
T 1orj_A 80 KNLDTIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEVKK 122 (130)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999998877 1112234455555555555555444433
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.74 E-value=44 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHH
Q 016474 324 DEFELTQRFASLDFKLKFVEHNIRF 348 (389)
Q Consensus 324 ~~fEI~~R~~~LN~KL~vi~e~l~~ 348 (389)
+.=++.+|+..|..||+.+++.++.
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3447899999999999999988764
No 11
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.31 E-value=73 Score=25.38 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=44.4
Q ss_pred cc-chhhhcc---ccHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016474 304 ER-SDIAWKD---AKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQN 355 (389)
Q Consensus 304 Dt-PD~~We~---p~le~lY~~l~~~fEI~~R~~~LN~KL~vi~e~l~~L~e~l~~ 355 (389)
+. |+-||+. ..-..|++.+.+--++..+++.|+..+..++...+-++++..+
T Consensus 23 e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 23 ENPSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6899986 4567799999999999999999999999999999998887754
No 12
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=26.33 E-value=2.5e+02 Score=25.14 Aligned_cols=73 Identities=5% Similarity=0.026 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhccccc---ccchhhhccccHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016474 279 SKKLFQLVGKANSNLADVILKLGLF---ERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQN 355 (389)
Q Consensus 279 rkeL~k~iGel~~~r~~inl~~~lL---DtPD~~We~p~le~lY~~l~~~fEI~~R~~~LN~KL~vi~e~l~~L~e~l~~ 355 (389)
..+|.+.--++..+|..+.-..+++ .+-+..|-.++...++. |+..+..-+.+-++.+.|++..+.|..++
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~------Dv~d~~~~~~e~~~~~re~l~~l~d~~~s 259 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQ------DIADRLGRGLDEIDACIARTGIMADEIAQ 259 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443322222 12233454444444333 23455556666666666666666666655
Q ss_pred cc
Q 016474 356 RK 357 (389)
Q Consensus 356 ~h 357 (389)
+-
T Consensus 260 ~~ 261 (264)
T 3nvo_A 260 VM 261 (264)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.90 E-value=68 Score=24.92 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016474 326 FELTQRFASLDFKLKFVEHNIRFLQEILQNRK 357 (389)
Q Consensus 326 fEI~~R~~~LN~KL~vi~e~l~~L~e~l~~~h 357 (389)
-++.+|+..|..|+.+..++++-|++.+..+.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq 41 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADAR 41 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999987553
No 14
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=24.88 E-value=1.3e+02 Score=27.85 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=40.3
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|...-++-.+||+.|+..+.. .|-|.+|.+ ++++..+ ....+-+|+.|-+|+=|
T Consensus 49 Vas~~l~~~ldL~~ia~~~~n~eYePe~Fpg---lv~Rl~~----------------------Pk~t~LIF~SGKiV~TG 103 (218)
T 3eik_A 49 VATVNLSCKLDLKNIALRARNAEYNPKRFAA---VIMRIRE----------------------PKTTALIFASGKMVITG 103 (218)
T ss_dssp EEEEECSSCCCHHHHHHHCTTEECCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEEECCCccCHHHHHhhCCCcEEcCccCce---EEEEecC----------------------CcEEEEEECCCeEEEEe
Confidence 666778899999999987642 355544433 4555441 22467899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 104 AkS 106 (218)
T 3eik_A 104 AKS 106 (218)
T ss_dssp ESS
T ss_pred cCC
Confidence 865
No 15
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=24.34 E-value=2.5e+02 Score=23.96 Aligned_cols=88 Identities=8% Similarity=0.102 Sum_probs=46.7
Q ss_pred HHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhhhhhhhcccccccchhhhccccHHHHHHHHHhhcc---chhH
Q 016474 255 VDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFE---LTQR 331 (389)
Q Consensus 255 vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~~We~p~le~lY~~l~~~fE---I~~R 331 (389)
.++.++.+..--..+++ |.+......|.|-+.=+..++..++.. .|+ ...|.+||+.+.+.+= ++.-
T Consensus 30 ydgal~~l~~A~~aie~-~d~~~k~~~i~KA~~Ii~eL~~sLd~e------gei---A~nL~~LY~y~~~~L~~Ani~~D 99 (145)
T 1vh6_A 30 YNGCLKFIRLAAQAIEN-DDMERKNENLIKAQNIIQELNFTLNRN------IEL---SASMGAMYDYMYRRLVQANIKND 99 (145)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHH------HHH---TTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHcCCc------hHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34444444443334443 676666666666665554454444432 122 2569999999866542 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016474 332 FASLDFKLKFVEHNIRFLQEI 352 (389)
Q Consensus 332 ~~~LN~KL~vi~e~l~~L~e~ 352 (389)
.+.|++=..++.++.+...+.
T Consensus 100 ~~~ldev~~ll~~LreaW~~i 120 (145)
T 1vh6_A 100 TGMLAEVEGYVTDFRDAWKQA 120 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.31 E-value=2.2e+02 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016474 321 YLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQ 354 (389)
Q Consensus 321 ~l~~~fEI~~R~~~LN~KL~vi~e~l~~L~e~l~ 354 (389)
.+.+.++=.+|.+.|..|-+-+++....|.....
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456678888888888888888887765544
No 17
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=23.31 E-value=1.9e+02 Score=26.10 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|..+-++.++||+.|+..+.. .|-|++|.+ ++++..+ ....+-+|+.|-+|+=|
T Consensus 19 Vas~~l~~~ldL~~la~~~~n~eY~P~~fpg---li~Rl~~----------------------Pk~t~lIF~SGKiv~TG 73 (198)
T 1mp9_A 19 VATVTLDQTLDLYAMERSVPNVEYDPDQFPG---LIFRLES----------------------PKITSLIFKSGKMVVTG 73 (198)
T ss_dssp EEEEECCSCCCHHHHHHHSTTCBCCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEC
T ss_pred EEEEEcCCcccHHHHHhhCCCCEECCccccc---eEEEcCC----------------------CceEEEEeCCCeEEEec
Confidence 566778999999999988753 344544433 4555431 22578899999999999
Q ss_pred CCCc
Q 016474 201 VSEP 204 (389)
Q Consensus 201 ~se~ 204 (389)
....
T Consensus 74 akS~ 77 (198)
T 1mp9_A 74 AKST 77 (198)
T ss_dssp CSSH
T ss_pred cCCH
Confidence 6553
No 18
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=22.91 E-value=1.3e+02 Score=26.94 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=39.1
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++-.+||+.|+..+.. .|-|..|.. ++++..+ ....+.+|+.|-||+=|
T Consensus 110 Vas~~l~~~i~L~~la~~~~~~eYePe~fPg---liyR~~~----------------------Pk~t~lIF~SGKiviTG 164 (188)
T 2z8u_A 110 VATADLGIEPNLDDIALMVEGTEYEPEQFPG---LVYRLDD----------------------PKVVVLIFGSGKVVITG 164 (188)
T ss_dssp EEEEECSSCCCHHHHHHHSTTEEECTTTSSS---EEEEEET----------------------TEEEEEECTTSEEEEES
T ss_pred EEEEecCCccCHHHHHhhCcCcEECCccCce---EEEEeCC----------------------CcEEEEEeCCCEEEEEe
Confidence 566788999999999977542 344433332 3444431 23468899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 165 aks 167 (188)
T 2z8u_A 165 LKS 167 (188)
T ss_dssp CSC
T ss_pred cCC
Confidence 965
No 19
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=22.83 E-value=1.7e+02 Score=26.08 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=39.7
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++-.+||+.|+..+.. .|-|.+|.. ++++..+ ....+.+|..|-||+=|
T Consensus 106 Vas~~l~~~i~L~~la~~~~~~~YePe~fpg---li~R~~~----------------------pk~~~lIF~SGKiviTG 160 (182)
T 1ais_A 106 VFSGDIGREFNLDVVALTLPNCEYEPEQFPG---VIYRVKE----------------------PKSVILLFSSGKIVCSG 160 (182)
T ss_dssp EEEEECSSCCCHHHHHHHSTTEECCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCccCHHHHHhhCCCCEECCccCce---EEEEeCC----------------------CcEEEEEecCCEEEEEe
Confidence 667788999999999987542 344444333 4444431 22467899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 161 aks 163 (182)
T 1ais_A 161 AKS 163 (182)
T ss_dssp ESS
T ss_pred cCC
Confidence 964
No 20
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=22.16 E-value=3.9e+02 Score=23.26 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 016474 236 RIIGSVLGQSIALDYYVRQVDGMVAEFTDINRGMEKTGTFT 276 (389)
Q Consensus 236 ~aIS~aLAQSVkL~~fE~~vd~~ie~~~~ip~~La~~G~i~ 276 (389)
..|+..|++ ..=...+++++++++.+...-+.|++.-.+.
T Consensus 35 ~~F~~~l~~-~~~~~~~e~L~~Ll~~I~~~G~rL~~~~t~~ 74 (162)
T 2p61_A 35 KEFFDILED-VKEDHFEKLLEEAVEEVIDSGNELVRSPTPS 74 (162)
T ss_dssp -CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 467888887 4448889999999999999999999965553
No 21
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=21.82 E-value=1.5e+02 Score=27.73 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=39.0
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|..+.++-.+||+.|+..+.. .|-|.+|.. ++++..+ ....+-+|+.|-+|+=|
T Consensus 71 Vas~~l~~~ldL~~ia~~~~n~eYePe~Fpg---li~Rl~~----------------------Pk~t~lIF~SGKiV~TG 125 (240)
T 1rm1_A 71 VATVTLGCRLDLKTVALHARNAEYNPKRFAA---VIMRIRE----------------------PKTTALIFASGKMVVTG 125 (240)
T ss_dssp EEEEECCSCCCHHHHHHHBTTEEECTTTCSE---EEEEEET----------------------TEEEEEEETTSEEEEEE
T ss_pred EEEEEcCCccCHHHHHhhCCCcEEcCcccce---EEEEeCC----------------------CcEEEEEECCCeEEEEe
Confidence 556688999999999977642 344433333 4444431 23477899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 126 aks 128 (240)
T 1rm1_A 126 AKS 128 (240)
T ss_dssp ESS
T ss_pred cCC
Confidence 754
No 22
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.45 E-value=1.7e+02 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=38.5
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|...-++-.+||+.|+..+.. .|-|.+|.+ ++++..+ ....+-+|+.|-+|+=|
T Consensus 11 Vas~~l~~~ldL~~ia~~~~n~eYePe~fpg---li~R~~~----------------------Pk~~~lIF~SGKiv~TG 65 (180)
T 1ytb_A 11 VATVTLGCRLDLKTVALHARNAEYNPKRFAA---VIMRIRE----------------------PKTTALIFASGKMVVTG 65 (180)
T ss_dssp EEEEECCSCCCHHHHHHHSSSEECCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCccCHHHHHhhCCCCEECccccCC---EEEEeCC----------------------CcEEEEEECCCeEEEEe
Confidence 555678999999999977642 344433332 3444431 22478899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 66 aks 68 (180)
T 1ytb_A 66 AKS 68 (180)
T ss_dssp ESS
T ss_pred cCC
Confidence 754
No 23
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=21.37 E-value=1.6e+02 Score=26.34 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=36.2
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|...-++.++||+.|+..+.. .|-|++|.+ ++++..+ ....+-+|+.|-+|+=|
T Consensus 19 Vas~~l~~~ldL~~ia~~~~n~eY~P~~fpg---li~Rl~~----------------------Pk~t~lIF~SGKiv~TG 73 (188)
T 2z8u_A 19 VVSTKIGDNIDLEEVAMILENAEYEPEQFPG---LVCRLSV----------------------PKVALLIFRSGKVNCTG 73 (188)
T ss_dssp EEEEECCSSCCHHHHHHHSSCCC-------C---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEEEeCCeeCHHHHHhhCCCCEECCCCccc---EEEEcCC----------------------CcEEEEEeCCCeEEEec
Confidence 556778999999999988753 333433322 4444431 22478899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 74 AkS 76 (188)
T 2z8u_A 74 AKS 76 (188)
T ss_dssp ESS
T ss_pred CCC
Confidence 654
No 24
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.89 E-value=1.7e+02 Score=26.35 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=39.8
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++-.+||+.|+..+.. .|-|.+|.. ++++..+ ....+.+|+.|-||+=|
T Consensus 110 Vas~~l~~~i~L~~la~~~~~~~YePe~fPg---liyR~~~----------------------Pk~t~lIF~SGKiviTG 164 (198)
T 1mp9_A 110 VASANLHVIVNLDKAAFLLENNMYEPEQFPG---LIYRMDE----------------------PRVVLLIFSSGKMVITG 164 (198)
T ss_dssp EEEEECSSEECHHHHHHHSSSEECCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEeeCCCccCHHHHHhhcCCcEECCccCCe---EEEEeCC----------------------CcEEEEEeCCCEEEEEe
Confidence 566788999999999987542 344444432 4444432 22467899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 165 aks 167 (198)
T 1mp9_A 165 AKR 167 (198)
T ss_dssp ESS
T ss_pred cCC
Confidence 965
Done!