Query 016474
Match_columns 389
No_of_seqs 194 out of 495
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 14:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016474.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016474hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisa2 d.129.1.1 (A:93-181) T 45.7 23 0.0017 26.1 6.2 59 122-205 14-74 (89)
2 d1orja_ a.24.19.1 (A:) Flagell 45.5 60 0.0044 24.9 9.9 68 255-326 25-92 (126)
3 d1qnaa2 d.129.1.1 (A:116-198) 45.0 25 0.0019 25.4 6.3 57 122-203 4-62 (83)
4 d1qnaa1 d.129.1.1 (A:17-115) T 44.8 21 0.0015 26.9 6.0 57 122-203 13-70 (99)
5 d1mp9a1 d.129.1.1 (A:5-96) TAT 38.9 44 0.0032 24.5 6.9 59 122-205 15-75 (92)
6 d1mp9a2 d.129.1.1 (A:97-197) T 32.5 46 0.0034 24.9 6.2 57 122-203 14-71 (101)
7 d1aisa1 d.129.1.1 (A:1-92) TAT 32.3 42 0.0031 24.7 5.8 59 122-205 15-75 (92)
8 d1vh6a_ a.24.19.1 (A:) Flagell 19.6 1.6E+02 0.011 21.4 7.3 84 255-352 11-94 (102)
9 d2oeza1 e.68.1.1 (A:1-245) Unc 19.0 1.6E+02 0.012 25.1 8.0 90 250-356 82-177 (245)
10 d1b43a1 a.60.7.1 (A:220-339) F 10.6 1.4E+02 0.011 22.5 4.6 31 299-329 61-91 (120)
No 1
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=45.73 E-value=23 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=40.0
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|....++-.+||..|+..+.. .|-|..|.. ++++..+ ....+-+|+.|-+|+-|
T Consensus 14 Vas~~l~~~idL~~la~~~~~~~Y~Pe~fpg---li~R~~~----------------------p~~t~lIF~SGKivitG 68 (89)
T d1aisa2 14 VFSGDIGREFNLDVVALTLPNCEYEPEQFPG---VIYRVKE----------------------PKSVILLFSSGKIVCSG 68 (89)
T ss_dssp EEEEECSSCCCHHHHHHHSTTEECCTTTCSS---EEEEETT----------------------TTEEEEECTTSEEEEEE
T ss_pred EEEEECCCcccHHHHHhhccCcEECcccCce---EEEEEcC----------------------CcEEEEEEcCCEEEEEc
Confidence 567788999999999987642 333433332 4454431 22578899999999999
Q ss_pred CC-Cch
Q 016474 201 VS-EPE 205 (389)
Q Consensus 201 ~s-e~e 205 (389)
.. ++|
T Consensus 69 aks~~~ 74 (89)
T d1aisa2 69 AKSEAD 74 (89)
T ss_dssp ESSHHH
T ss_pred cCCHHH
Confidence 74 444
No 2
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=45.47 E-value=60 Score=24.86 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhhhhhhhcccccccchhhhccccHHHHHHHHHhhc
Q 016474 255 VDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEF 326 (389)
Q Consensus 255 vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~~We~p~le~lY~~l~~~f 326 (389)
.++.+..++.--..+.+ |...-.+++..+.+++.......+....++=.-+|+. ..|.++|..+.+.+
T Consensus 25 yd~~i~~l~~a~~a~~~-~d~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~GgeiA---~nL~~lY~~~~~~L 92 (126)
T d1orja_ 25 YDKAIECLERAIEIYDQ-VNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIA---KNLDTIYTIILNTL 92 (126)
T ss_dssp HHHHHHHHHHHHHTGGG-TTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH---HHHHHHHHHHHHHH
Confidence 34444444443333333 5555555666677777766666666555533334543 67999999987765
No 3
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=45.04 E-value=25 Score=25.44 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=38.7
Q ss_pred EEEEeeccccchhhHHHHhc--cCCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEE
Q 016474 122 VKAYFFSTSVDLRGLVDQNR--QNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLF 199 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~--~~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfw 199 (389)
|-.++++-.+||..|+.... ..|-|..|.. ++++.. +....+-+|..|-||+=
T Consensus 4 Vas~~l~~~I~L~~la~~~~~~~~YePe~fpg---l~~R~~----------------------~pk~~~lIF~SGkivit 58 (83)
T d1qnaa2 4 VGSCDVKFPIRLEGLAYSHAAFSSYEPELFPG---LIYRMK----------------------VPKIVLLIFVSGKIVIT 58 (83)
T ss_dssp EEEEECSSCBCHHHHHHHTTTTEECCTTTCSS---EEEEET----------------------TTTEEEEECTTSEEEEE
T ss_pred EEEEECCCCccHHHHHHhhhhhcccChhhCCe---EEEEEC----------------------CCCeEEEEEcCCEEEEE
Confidence 56788899999999987654 2333433332 344443 12247889999999999
Q ss_pred cCCC
Q 016474 200 NVSE 203 (389)
Q Consensus 200 n~se 203 (389)
|...
T Consensus 59 Gaks 62 (83)
T d1qnaa2 59 GAKM 62 (83)
T ss_dssp EESS
T ss_pred CCCC
Confidence 9964
No 4
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.81 E-value=21 Score=26.88 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=39.1
Q ss_pred EEEEeeccccchhhHHHHhc-cCCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNR-QNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~-~~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++..+||..|+..+. ..|-|.+|.. ++++..+ ....+-+|+.|-+|+=|
T Consensus 13 Vas~~l~~~idL~~la~~~~n~eYePe~fpg---li~R~~~----------------------P~~t~lIF~SGKivitG 67 (99)
T d1qnaa1 13 VSTVNLDCKLDLKAIALQARNAEYNPKRFAA---VIMRIRE----------------------PKTTALIFASGKMVCTG 67 (99)
T ss_dssp EEEEECCSCCCHHHHHHHCSSEEECTTTCSE---EEEEETT----------------------TTEEEEEETTSEEEEEE
T ss_pred EEEEEcCCcccHHHHHhhCCCCEECcccCCE---EEEEeCC----------------------CcEEEEEEcCCEEEEec
Confidence 66778899999999998764 2343433322 4454431 23578899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 68 aks 70 (99)
T d1qnaa1 68 AKS 70 (99)
T ss_dssp ESS
T ss_pred cCC
Confidence 754
No 5
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=38.89 E-value=44 Score=24.53 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=39.5
Q ss_pred EEEEeeccccchhhHHHHhc-cCCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNR-QNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~-~~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++-.+||..|+..+. ..|-|.+|.. ++++.. .....+-+|+.|-+|.=|
T Consensus 15 Vas~~l~~~idL~~la~~~~~~~YePe~fpg---li~R~~----------------------~p~~t~lIF~SGkivitG 69 (92)
T d1mp9a1 15 VATVTLDQTLDLYAMERSVPNVEYDPDQFPG---LIFRLE----------------------SPKITSLIFKSGKMVVTG 69 (92)
T ss_dssp EEEEECCSCCCHHHHHHHSTTCBCCTTTCSS---EEEEET----------------------TTTEEEEECTTSEEEEEC
T ss_pred EEEEECCCcccHHHHHhhCCCCEECCccCce---EEEEEC----------------------CCcEEEEEEcCCEEEEEc
Confidence 45778899999999998764 2333433322 444443 123467899999999999
Q ss_pred CC-Cch
Q 016474 201 VS-EPE 205 (389)
Q Consensus 201 ~s-e~e 205 (389)
.. ++|
T Consensus 70 aks~~~ 75 (92)
T d1mp9a1 70 AKSTDE 75 (92)
T ss_dssp CSSHHH
T ss_pred cCCHHH
Confidence 84 454
No 6
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=32.45 E-value=46 Score=24.90 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=38.4
Q ss_pred EEEEeeccccchhhHHHHhcc-CCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNRQ-NFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~~-~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|-.+.++-.+||..|+..+.. .|-|..|.. ++++.. .....+-+|+.|-+|.=|
T Consensus 14 Vas~~l~~~idL~~la~~~~~~~YePe~fpg---li~R~~----------------------~pk~t~lIF~SGKivitG 68 (101)
T d1mp9a2 14 VASANLHVIVNLDKAAFLLENNMYEPEQFPG---LIYRMD----------------------EPRVVLLIFSSGKMVITG 68 (101)
T ss_dssp EEEEECSSEECHHHHHHHSSSEECCTTTCSS---EEEEET----------------------TTTEEEEECTTSEEEEEE
T ss_pred EEEEECCCcccHHHHHhhCCCCEECcccCCe---EEEEec----------------------CCcEEEEEEcCCEEEEEc
Confidence 567888999999999977642 233433322 344443 123578899999999999
Q ss_pred CCC
Q 016474 201 VSE 203 (389)
Q Consensus 201 ~se 203 (389)
...
T Consensus 69 aks 71 (101)
T d1mp9a2 69 AKR 71 (101)
T ss_dssp ESS
T ss_pred cCC
Confidence 754
No 7
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=32.32 E-value=42 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=37.7
Q ss_pred EEEEeeccccchhhHHHHhc-cCCCCCCCcccccEEEEecCCCCCCCccccccCCCCCccCCCCccEEEEEecCcEEEEc
Q 016474 122 VKAYFFSTSVDLRGLVDQNR-QNFIPPTSRMTNYVVLKFGTLSNPSGLLSSLSQGTGASISGSDCCFMVVFQYGSIVLFN 200 (389)
Q Consensus 122 V~Ay~~aesidL~~L~~~l~-~~~ip~~~~~~~~lvl~~~dl~~~~~~~s~~~~~~~~~~~~~~~~~vfvF~yGvVVfwn 200 (389)
|..+-++-.+||..|+..+. ..|-|.+|.. ++++.. .....+-+|+.|-+|.-|
T Consensus 15 Vas~~l~~~idL~~la~~~~~~~YePe~fpg---l~~R~~----------------------~p~~~~lIF~sGkivitG 69 (92)
T d1aisa1 15 VASVDLFAQLDLEKVLDLCPNSKYNPEEFPG---IICHLD----------------------DPKVALLIFSSGKLVVTG 69 (92)
T ss_dssp EEEEECCSCCCHHHHTTTSTTCBCCTTTCSS---EEEECS----------------------SSCCEEEECTTSEEEEEE
T ss_pred EEEEECCCCccHHHHHhhCCCCEECcccCCe---EEEEeC----------------------CCcEEEEEECCCEEEEEc
Confidence 55677889999999986643 2233322222 334332 123567899999999999
Q ss_pred CC-Cch
Q 016474 201 VS-EPE 205 (389)
Q Consensus 201 ~s-e~e 205 (389)
.. .+|
T Consensus 70 akS~~~ 75 (92)
T d1aisa1 70 AKSVQD 75 (92)
T ss_dssp ESSHHH
T ss_pred cCCHHH
Confidence 84 444
No 8
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=19.57 E-value=1.6e+02 Score=21.38 Aligned_cols=84 Identities=6% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHHHHhHHHHHhhcCCcccchHHHHHHHHHHHHhhhhhhhcccccccchhhhccccHHHHHHHHHhhccchhHHHH
Q 016474 255 VDGMVAEFTDINRGMEKTGTFTMESKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFAS 334 (389)
Q Consensus 255 vd~~ie~~~~ip~~La~~G~i~lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~~We~p~le~lY~~l~~~fEI~~R~~~ 334 (389)
.++.+..++.....+.+ |.+.-..+.+.|-+.=+..++..++- .+|+ -.+|.++|..+.+.+--. .
T Consensus 11 yd~~i~~l~~a~~ai~~-~d~~~~~~~~~ka~~Ii~~L~~sLd~------~gei---A~nL~~LY~y~~~~L~~a----~ 76 (102)
T d1vh6a_ 11 YNGCLKFIRLAAQAIEN-DDMERKNENLIKAQNIIQELNFTLNR------NIEL---SASMGAMYDYMYRRLVQA----N 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHH------HHHH---TTHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcccC------ChHH---HHHHHHHHHHHHHHHHHH----H
Confidence 34444444444444433 66655555555555544444433321 1233 357999999997765332 2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016474 335 LDFKLKFVEHNIRFLQEI 352 (389)
Q Consensus 335 LN~KL~vi~e~l~~L~e~ 352 (389)
+++..+.+.+..+++.++
T Consensus 77 ~~~d~~~l~~v~~~l~~l 94 (102)
T d1vh6a_ 77 IKNDTGMLAEVEGYVTDF 94 (102)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 233333444444444443
No 9
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=19.01 E-value=1.6e+02 Score=25.11 Aligned_cols=90 Identities=7% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCcc--cchHHHHHHHHHHHHhhhhhhhcccccccchh-hhccccHHHHHHHHHhhc
Q 016474 250 YYVRQVDGMVAEFTDINRGMEKTGTFT--MESKKLFQLVGKANSNLADVILKLGLFERSDI-AWKDAKYAQIWEYLRDEF 326 (389)
Q Consensus 250 ~fE~~vd~~ie~~~~ip~~La~~G~i~--lsrkeL~k~iGel~~~r~~inl~~~lLDtPD~-~We~p~le~lY~~l~~~f 326 (389)
+.++.++.+++++...-..|...|+++ +...++++.+ ..|..+-+..--+|-|.+ +|=.-
T Consensus 82 vd~~~l~~~l~~i~~~~~~L~~~~~~g~~Lrede~L~~i----rqR~~iPGG~c~FDLP~yh~WL~~------------- 144 (245)
T d2oeza1 82 VDQEALNSLLNEIDVVHSQLMGAERFGQALKEDRFLSSI----RQRFNLPGGSCCFDLPALHYWLHL------------- 144 (245)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHCHHHHHH----HHHHHC----CGGGCHHHHHHHTS-------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCchhhhccHhHHHHHH----HHHcCCCCCCcCCCCHHHHHHHCC-------------
Confidence 446778888899999999988888875 5667777666 566667776667788876 45332
Q ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHhhc
Q 016474 327 ELTQRFASLDFK---LKFVEHNIRFLQEILQNR 356 (389)
Q Consensus 327 EI~~R~~~LN~K---L~vi~e~l~~L~e~l~~~ 356 (389)
+...|.+-|+.- +.-+.+-++++..++.+.
T Consensus 145 ~~~~R~~~l~~W~~~l~pl~~ai~~iL~llR~s 177 (245)
T d2oeza1 145 PIERKKHDANQWQKSLKPLSDALTLWLKLARET 177 (245)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555556633 344566666666666543
No 10
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.61 E-value=1.4e+02 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=26.7
Q ss_pred cccccccchhhhccccHHHHHHHHHhhccch
Q 016474 299 KLGLFERSDIAWKDAKYAQIWEYLRDEFELT 329 (389)
Q Consensus 299 ~~~lLDtPD~~We~p~le~lY~~l~~~fEI~ 329 (389)
+-.+.|..++.|..|.++.+-+-+.++.+.+
T Consensus 61 ~p~v~d~~~~~~~~pd~~~l~~fL~~e~~f~ 91 (120)
T d1b43a1 61 NPPVTDNYNLVWRDPDEEGILKFLCDEHDFS 91 (120)
T ss_dssp SCCCCCCCCCCCCCCCHHHHHHHHTTTTCCC
T ss_pred CCCCCCCCCcCCCCCCHHHHHHHHHHccCCC
Confidence 3456678899999999999999999998885
Done!