BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016475
         (389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
           Alpha-l-arabinofuranosidase From Geobacillus
           Stearothermophilus T6
 pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
           Alpha-l-arabinofuranosidase From Geobacillus
           Stearothermophilus T6
          Length = 502

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 257 VHLTYYQ----FHHEAAPVIFSPQLSIP-------AFVGRILVGMPTILLVKF------- 298
           +HL++ +    +H   A  +  P    P        F   +LVG   I L+K        
Sbjct: 288 IHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIA 347

Query: 299 CSKALAKWIVPVISNTLGIPIKSTSYIPMLNAPVKGK 335
           C   L   I P+++   G   K T Y P ++A V G+
Sbjct: 348 CLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 384


>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
           Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
 pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
           Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
 pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
           Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
 pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
           Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
 pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
           Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
 pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
           Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
          Length = 502

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 18/97 (18%)

Query: 257 VHLTYYQ----FHHEAAPVIFSPQLSIP-------AFVGRILVGMPTILLVKF------- 298
           +HL++ +    +H   A  +  P    P        F   +LVG   I L+K        
Sbjct: 288 IHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIA 347

Query: 299 CSKALAKWIVPVISNTLGIPIKSTSYIPMLNAPVKGK 335
           C   L   I P+++   G   K T Y P ++A V G+
Sbjct: 348 CLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 384


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,795,563
Number of Sequences: 62578
Number of extensions: 407704
Number of successful extensions: 873
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 2
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)