Query 016475
Match_columns 389
No_of_seqs 234 out of 958
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 99.1 1.6E-10 5.4E-15 107.9 10.6 116 44-161 42-164 (231)
2 2ipb_A PHON protein, class A n 99.1 1.8E-10 6.3E-15 107.4 10.7 117 44-161 30-152 (230)
3 1qi9_A Protein (vanadium bromo 97.3 0.0001 3.5E-09 76.5 3.3 55 108-162 377-433 (556)
4 3bb0_A Vanadium chloroperoxida 95.9 0.015 5.1E-07 61.0 8.0 58 105-162 346-419 (609)
5 1up8_A Vanadium-dependent brom 91.3 0.15 5E-06 53.2 4.4 27 137-163 477-503 (598)
6 1v54_I STA, cytochrome C oxida 11.3 1.5E+02 0.0051 22.0 2.5 30 91-120 15-44 (73)
7 2k9j_B Integrin beta-3; transm 9.8 2E+02 0.0067 19.0 2.5 16 286-301 21-36 (43)
8 3arc_E Cytochrome B559 subunit 6.8 3.3E+02 0.011 20.5 2.8 16 106-121 37-52 (83)
9 2kr6_A Presenilin-1; protease, 6.7 7.1E+02 0.024 21.5 5.3 52 72-123 92-145 (176)
10 1s4x_A Integrin beta-3; cell a 5.8 1.2E+02 0.0041 22.2 -0.1 14 286-299 10-23 (67)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.14 E-value=1.6e-10 Score=107.91 Aligned_cols=116 Identities=16% Similarity=-0.054 Sum_probs=75.4
Q ss_pred hhccHHHHHHHHhh-cchhHHHHHHHHhhcchhHHHHHHHHHHHHhhchHHHHH--HHHHHHH--HH-HHHHHHhhhhcc
Q 016475 44 VIIGTAFILQIQKY-QHKFLDSLFSGLSCVVSVPFYTGFLPLVFWSGHVKLARH--MTLLMAF--CD-YLGNTIKDTVSA 117 (389)
Q Consensus 44 ~~~e~~il~~iq~~-~~p~ld~~f~~~T~lG~~~f~i~~l~l~~w~~~~~~~~~--l~~~l~~--s~-~l~~~lK~~~~~ 117 (389)
.+.|.+++.++|+. .+|.+|..+...+..|+...+. +...+.|..+++.... .....++ +. .+++.+|..++|
T Consensus 42 ~~~D~~~~~~i~~~~~~~~~~~a~~~~t~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~lK~~~~r 120 (231)
T 1d2t_A 42 FLNDQAMYEQGRLLRNTERGKLAAEDANLSSGGVANA-FSGAFGSPITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMR 120 (231)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHCCHHHHHHH-THHHHTSCCSTTTCHHHHHHHHHTHHHHHTTTTHHHHHHHCC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhhccCchhHHHH-HHHHHccccChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999987 5889999999999998765443 3333445444332111 1111122 22 678999999999
Q ss_pred cCCCCCc-ccccccccccccCCCCCCCCchhHHhHHHHHHHHHHH
Q 016475 118 PRPSCPP-VRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHY 161 (389)
Q Consensus 118 PRP~~pp-~~rl~~~~~~~~~~~~YsFPSgHt~~a~a~~~~l~~~ 161 (389)
|||+... ....... .+..+..+||||||||++++++++.+..+
T Consensus 121 ~RP~~~~~~~~~~p~-~~~~~~~~~SFPSGHa~~a~a~a~~l~~~ 164 (231)
T 1d2t_A 121 IRPFAFYGVSTCNTT-EQDKLSKNGSYPSGHTSIGWATALVLAEI 164 (231)
T ss_dssp CCHHHHHTCCCSCC---CCCCCSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred CCcCccCCCCceecC-CcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9997421 1111000 01125788999999999999998877654
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.13 E-value=1.8e-10 Score=107.35 Aligned_cols=117 Identities=15% Similarity=-0.035 Sum_probs=76.5
Q ss_pred hhccHHHHHHHHhhcchhHHHHHHHHhhcchhHHHHHHHHHHHHhhchHH---HHHHHHHHHH-HH-HHHHHHhhhhccc
Q 016475 44 VIIGTAFILQIQKYQHKFLDSLFSGLSCVVSVPFYTGFLPLVFWSGHVKL---ARHMTLLMAF-CD-YLGNTIKDTVSAP 118 (389)
Q Consensus 44 ~~~e~~il~~iq~~~~p~ld~~f~~~T~lG~~~f~i~~l~l~~w~~~~~~---~~~l~~~l~~-s~-~l~~~lK~~~~~P 118 (389)
...|.+++.++|+.+++.....+...+.+|.+.....+...+.+...++. ...++..+.. +. .+++.+|+.++||
T Consensus 30 ~~~D~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ll~~~~~~a~~~~~~~lK~~~~r~ 109 (230)
T 2ipb_A 30 FRYDKEAYFKGYAIKGSPRWKQAAEDADISVENIARIFSPVVGAKINPKDTPETWNMLQNLLKMGGYYATASAKKYYMRT 109 (230)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHCCSHHHHHHHHHHHHTBCCSTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHhcCcchHHHHHHHHhCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999998888888877778877655555554444443322 2222222222 23 6889999999999
Q ss_pred CCCCC-cccccccccccccCCCCCCCCchhHHhHHHHHHHHHHH
Q 016475 119 RPSCP-PVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHY 161 (389)
Q Consensus 119 RP~~p-p~~rl~~~~~~~~~~~~YsFPSgHt~~a~a~~~~l~~~ 161 (389)
||... +....... .+.....+||||||||++++++++.+..+
T Consensus 110 RP~~~~~~~~~~~~-~~~~~~~~~SFPSGHa~~a~a~a~~l~~~ 152 (230)
T 2ipb_A 110 RPFVLFNHSTCRPE-DENTLRKDGSYPSGHDAYSTLLALVLSQA 152 (230)
T ss_dssp CHHHHTTCCCSCGG-GHHHHHTSCCSSCHHHHHHHHHHHHHHHH
T ss_pred CcCccCCCCeeccC-cccCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 99742 11111100 00014578999999999999998776644
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=97.29 E-value=0.0001 Score=76.46 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=38.1
Q ss_pred HHHHhhhhcccCCCCC--cccccccccccccCCCCCCCCchhHHhHHHHHHHHHHHH
Q 016475 108 GNTIKDTVSAPRPSCP--PVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHYV 162 (389)
Q Consensus 108 ~~~lK~~~~~PRP~~p--p~~rl~~~~~~~~~~~~YsFPSgHt~~a~a~~~~l~~~~ 162 (389)
.+++|.+++||||+.+ ....+......+.+..+||||||||+.++++++.+..++
T Consensus 377 ~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~ 433 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALI 433 (556)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 3689999999999752 122110000011256889999999999999999887665
No 4
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=95.91 E-value=0.015 Score=61.01 Aligned_cols=58 Identities=19% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhcccCCCC------------Cccccccc----ccccccCCCCCCCCchhHHhHHHHHHHHHHHH
Q 016475 105 DYLGNTIKDTVSAPRPSC------------PPVRRVTA----TKDEKENALEYGLPSSHTLNTVCLAGYLLHYV 162 (389)
Q Consensus 105 ~~l~~~lK~~~~~PRP~~------------pp~~rl~~----~~~~~~~~~~YsFPSgHt~~a~a~~~~l~~~~ 162 (389)
...++..|..+.|+||+. |....+.. ...-..+...+|||||||+.+.+.+..+..++
T Consensus 346 ~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 346 GIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp HHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567999999999952 11111100 00000256789999999999999999887666
No 5
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=91.28 E-value=0.15 Score=53.22 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.1
Q ss_pred CCCCCCCCchhHHhHHHHHHHHHHHHH
Q 016475 137 NALEYGLPSSHTLNTVCLAGYLLHYVL 163 (389)
Q Consensus 137 ~~~~YsFPSgHt~~a~a~~~~l~~~~~ 163 (389)
+...+|||||||+.+.+.+..+..++-
T Consensus 477 tP~~pSYPSGHAt~S~A~A~vL~~lf~ 503 (598)
T 1up8_A 477 SPFHPSYGSGHAVVAGACVTILKAFFD 503 (598)
T ss_dssp SCSSCSSSCHHHHHHHHHHHHHHHHBT
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999988876553
No 6
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=11.28 E-value=1.5e+02 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 016475 91 VKLARHMTLLMAFCDYLGNTIKDTVSAPRP 120 (389)
Q Consensus 91 ~~~~~~l~~~l~~s~~l~~~lK~~~~~PRP 120 (389)
++.-+.+...++++...+.+.|-.++.||-
T Consensus 15 ~~lr~~i~~a~~lsl~~~~~~k~~v~~pRK 44 (73)
T 1v54_I 15 RRLRFHIVGAFMVSLGFATFYKFAVAEKRK 44 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455667788888888888889988888874
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=9.83 E-value=2e+02 Score=18.96 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=12.0
Q ss_pred HHhhhHHHHHHHHHHH
Q 016475 286 ILVGMPTILLVKFCSK 301 (389)
Q Consensus 286 ~llGv~~v~~~r~~~K 301 (389)
.++|+.++++||....
T Consensus 21 vliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 21 LLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5678888889987643
No 8
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=6.80 E-value=3.3e+02 Score=20.50 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.8
Q ss_pred HHHHHHhhhhcccCCC
Q 016475 106 YLGNTIKDTVSAPRPS 121 (389)
Q Consensus 106 ~l~~~lK~~~~~PRP~ 121 (389)
.-+++.=|.|.-|||.
T Consensus 37 VstGLaYdvFGtPrpn 52 (83)
T 3arc_E 37 VSTGLAYDVFGTPRPD 52 (83)
T ss_dssp HHTSHHHHHHTCCCTT
T ss_pred hccCcceeccCCCCcc
Confidence 3356788999999996
No 9
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=6.66 E-value=7.1e+02 Score=21.46 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 016475 72 VVSVPFYTGFLPLVF--WSGHVKLARHMTLLMAFCDYLGNTIKDTVSAPRPSCP 123 (389)
Q Consensus 72 lG~~~f~i~~l~l~~--w~~~~~~~~~l~~~l~~s~~l~~~lK~~~~~PRP~~p 123 (389)
+||-.||-+++--.. -.++......+.+....+..++-.+=..++++=|..|
T Consensus 92 LGDFIFYSvLVgkAa~~~~~d~~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP 145 (176)
T 2kr6_A 92 LGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALP 145 (176)
T ss_dssp TTTHHHHHHHHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS
T ss_pred ccCeeehHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Confidence 788888887754333 1123333344444444555556555557777777644
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=5.82 E-value=1.2e+02 Score=22.16 Aligned_cols=14 Identities=14% Similarity=-0.135 Sum_probs=2.1
Q ss_pred HHhhhHHHHHHHHH
Q 016475 286 ILVGMPTILLVKFC 299 (389)
Q Consensus 286 ~llGv~~v~~~r~~ 299 (389)
-++|++++++||.+
T Consensus 10 ~liGl~lLliwKll 23 (67)
T 1s4x_A 10 SSGLVPRGSHMKLL 23 (67)
T ss_dssp -----------CHH
T ss_pred hHHHHHHHHHHHHH
Confidence 47899999999865
Done!