Query 016476
Match_columns 389
No_of_seqs 508 out of 1307
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 14:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.1E-44 7E-49 330.5 31.0 371 2-389 70-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.2E-35 1.4E-39 265.9 14.0 338 2-371 77-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.3E-32 1.1E-36 245.8 23.1 303 2-359 76-419 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.3E-30 1.1E-34 236.2 22.4 367 2-379 69-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.1E-30 3.9E-35 230.9 3.7 305 2-360 50-363 (375)
6 2cfq_A Lactose permease; trans 99.9 2.4E-28 8.1E-33 218.7 3.8 333 2-380 58-407 (417)
7 2xut_A Proton/peptide symporte 99.9 2.6E-26 8.8E-31 212.1 9.4 120 2-121 69-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.7E-13 1.6E-17 120.8 11.4 176 188-377 31-211 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.8E-12 6.1E-17 116.6 14.4 134 201-347 42-177 (438)
10 2gfp_A EMRD, multidrug resista 99.3 1.5E-12 5.1E-17 114.6 7.5 162 201-378 16-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.5E-11 8.5E-16 110.8 11.9 139 215-369 49-193 (491)
12 2xut_A Proton/peptide symporte 99.2 1.7E-10 5.8E-15 106.2 14.0 148 203-365 30-191 (524)
13 2cfq_A Lactose permease; trans 99.1 1.4E-11 4.7E-16 110.0 3.5 125 2-126 274-404 (417)
14 4gc0_A D-xylose-proton symport 99.0 7.8E-10 2.7E-14 100.9 7.1 124 2-126 327-467 (491)
15 2g9p_A Antimicrobial peptide l 76.3 1.3 4.3E-05 19.9 1.2 14 6-19 2-15 (26)
16 2bzw_B BCL2-antagonist of cell 25.2 30 0.001 16.1 1.0 12 5-16 2-13 (27)
17 3arc_T Photosystem II reaction 24.6 76 0.0026 15.9 2.8 11 117-127 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.1e-44 Score=330.55 Aligned_cols=371 Identities=31% Similarity=0.525 Sum_probs=291.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHH------------------hccchhHHHHHHHHhhhcccccccccce
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPV 63 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 63 (389)
+|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~ 149 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM 149 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998 4789999999999999999999999999
Q ss_pred eeeeccCcccccchhhhhHHHHHHHHHHHHHhcccc------------chHHHHHhhhHHHHHHHHHHhcccCCchhhHh
Q 016476 64 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 131 (389)
Q Consensus 64 ~i~~~~~~~~r~~~~~~~~~~~~lG~~l~~~i~~~~------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 131 (389)
+++|+.|+++|++..++.+.+..+|.++++.++... +||+.+.+..+..++..+..+++||||+|+..
T Consensus 150 ~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~ 229 (491)
T 4gc0_A 150 YIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS 229 (491)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred HHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence 999999999999999999999999999988877543 58899999988888888889999999999999
Q ss_pred cCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHH
Q 016476 132 MGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI 211 (389)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
+++.+++++.+++..+.+...+...+..+... ++++....... ...++.........+....+.+.+.+|.+.+
T Consensus 230 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 230 RGKQEQAEGILRKIMGNTLATQAVQEIKHSLD---HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCchhHHHHhHHHhcCCchhHHHHHHHHHHHH---hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 99999999888876553322211111111111 11111111111 2233455566666677777788889999998
Q ss_pred HhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHH
Q 016476 212 FANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILS 289 (389)
Q Consensus 212 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (389)
.++.+.+... ......++..+++.++.+++.||+|||+.+..+...+.++.+.++........ ....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~ 372 (491)
T 4gc0_A 304 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVA 372 (491)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHH
T ss_pred HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHH
Confidence 8887765544 44556678889999999999999999999998888888877766654332211 1222
Q ss_pred HHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-------hccchhhHHHHHHH
Q 016476 290 LVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-------WSSGGTFLIYGIVC 362 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-------~~~~~~~~~~~~~~ 362 (389)
+.....+..++..+..|+.+.+.+|.+|++.|+++.|+.+..+++++.+++.+.+.+.+ .+....++++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333344455667778888999999999999999999999999999999998877654 23445678888888
Q ss_pred HHHHHHHHhhcccCCCCCHHHHhhhhC
Q 016476 363 AFTVAFVSLWVPETKGRSLEEIQFSFR 389 (389)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (389)
++..++.++++||||+|+.||+|+.||
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 888888899999999999999999875
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.2e-35 Score=265.86 Aligned_cols=338 Identities=14% Similarity=0.139 Sum_probs=232.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHh----ccchhHHHHHHHHhhhcccccccccceeeeeccCcccccch
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL 77 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 77 (389)
++++++|+++||+|||++++++.++.+++.+++++ ++|++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----c-hHHHHHhhhHHHHHH-HHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcc
Q 016476 78 GSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD 151 (389)
Q Consensus 78 ~~~~~~~~~lG~~l~~~i~~~~----~-wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++.+.+.++|.+++|.+++.+ + ||+.|++.++..++. ++..+++||+|++...+++.++. ++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 225 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------ND 225 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cc
Confidence 9999999999999999999875 7 999999988877765 44556789887643222111100 00
Q ss_pred hhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHH
Q 016476 152 ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLG 228 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 228 (389)
.+ + +.+++.+++...++...++.++++..+...+ ..+...........+.|.++++ .|.+... .......
T Consensus 226 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 226 YP-D--DYNEKAEQELTAKQIFMQYVLPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp ----------------CCTHHHHHHTSSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred cc-c--cchhhhhcccccccchHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 0 0000000011111111344444443333322 2222333355667778888876 6776554 5566667
Q ss_pred HHHHHHHHHHHHHHhhh--chhHHHHHHhHHHH-HHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccc
Q 016476 229 VVQVVATGVNTWLMDKA--GRRLLLLISSSGMA-ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 305 (389)
Q Consensus 229 ~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .+.+ ............+.+ .....
T Consensus 299 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~g~~-~~~~~ 364 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-------NPAG------NPTVDMICMIVIGFL-IYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-------CCTT------CHHHHHHHHHHHHHH-HTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-------hccc------CHHHHHHHHHHHHHH-HhchH
Confidence 88999999999999999 99988776665554 33333221 0000 011111122222211 22334
Q ss_pred cchhhhhccccccchhhhhhhHHHHHHHH-HHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHh
Q 016476 306 AIPWVIMSEILPVNIKSLAGSVATLANWL-VSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL 371 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (389)
+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+ .++...++..+++..+..++...
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 55568899999999999999999999999 99999999999998 45555566666655555444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.3e-32 Score=245.85 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=221.0
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHH---HhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchh
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 78 (389)
++++++|+++||+|||++++++.++.+++.+++ +++++++.+++.|++.|++.+...+...+++.|++|+++|++++
T Consensus 76 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 155 (438)
T 3o7q_A 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_dssp TTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHH
Confidence 578999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccc-----c-------------------------hHHHHHhhhHHHHHHHHHHhc--ccCCc
Q 016476 79 SVNQLSVTIGIMLAYLLGLFV-----N-------------------------WRVLAVLGVLPCTLLIPGLFF--IPESP 126 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~-----~-------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p 126 (389)
++.+.+.++|.+++|.+++.+ + ||+.|++.++..++..+..++ .||++
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999999999877 2 999998777666555444333 45543
Q ss_pred hhhHhcCChhHHHHHHHHHhcCCcchhHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016476 127 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
+.. + +++++++.+.+++++++++..+...+...+.... ......
T Consensus 236 ~~~---~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 279 (438)
T 3o7q_A 236 SDN---H-----------------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWS 279 (438)
T ss_dssp TTC---C-----------------------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ccc---c-----------------------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHH
Confidence 210 0 0011122234456677766655544443333332 345556
Q ss_pred HHHHH-Hhhc-CCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccch
Q 016476 207 YSSNI-FANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFY 282 (389)
Q Consensus 207 ~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (389)
+.+.+ .++. |.+... .......++.+++.++.+++.||++||+.+..+..+..++.+++... .
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~---------- 346 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---G---------- 346 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---C----------
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---C----------
Confidence 66766 6654 776554 55566678889999999999999999999888887777665554421 0
Q ss_pred hHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hc-cchhhHHHH
Q 016476 283 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WS-SGGTFLIYG 359 (389)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~-~~~~~~~~~ 359 (389)
.. .......+...+ .....|..+++..|.+|++ ++.+.++.. .+.++..++|.+.|.+.| .+ ....+.+.+
T Consensus 347 --~~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 347 --GH-VGLIALTLCSAF-MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp --HH-HHHHHHHHHHHH-HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred --Cc-HHHHHHHHHHHH-HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 00 111112222222 2334566778888999977 888888777 677999999999999999 44 444555433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.3e-30 Score=236.21 Aligned_cols=367 Identities=14% Similarity=0.107 Sum_probs=221.2
Q ss_pred chhhchHHHHhh-hhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCccc--ccchh
Q 016476 2 VGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLG 78 (389)
Q Consensus 2 ig~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~ 78 (389)
++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++ |++++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 578999999999 899999999999999999999999999999999999999999999999999999999988 77788
Q ss_pred hhhHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhcc-cCCch----hhHhcCChhHHHHHHHH-----
Q 016476 79 SVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PESPR----WLAKMGMTEDFESSLQV----- 144 (389)
Q Consensus 79 ~~~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p~----~~~~~~~~~~~~~~~~~----- 144 (389)
++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+..+ ....+.+.++.++..+.
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 889999999999999999887 89999999877666654444322 22111 00111122222222111
Q ss_pred ----------HhcCCcchhHHHHHHHH--------HhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHH
Q 016476 145 ----------LRGFDTDISIEVNEIKR--------SVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 206 (389)
Q Consensus 145 ----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (389)
......+.+........ ......++......+..+............+..... .....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 304 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIE----EQGSV 304 (491)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHH----GGGGT
T ss_pred HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHH----hhccH
Confidence 00111111110000000 000000000000011111111111222222222222 22233
Q ss_pred HHHHHHhh-cCCC--CccHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-----HHhHHHHHHHHHHHHHHhhcccccCC
Q 016476 207 YSSNIFAN-AGIS--SSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLL-----ISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 207 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
+.+.+.++ .+.+ ..........+..+++.++.+++.||++||+... .+..+..++..++......... +.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 383 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-SGK 383 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC-CTT
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 33444433 3333 2335566677888888999999999999886544 5555555555544433211110 000
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHH
Q 016476 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY 358 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 358 (389)
.+ .........+...+ .....+..+.+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+.+....+..+
T Consensus 384 ~~-----~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 457 (491)
T 4aps_A 384 VS-----PLWLVGSWALVILG-EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYF 457 (491)
T ss_dssp CC-----THHHHHHHHHHHHH-HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHT
T ss_pred cc-----HHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 01 11111222222222 2233566678999999999999999999999999999999999999887777778777
Q ss_pred HHHHHHHHHHHHhhcccCCCC
Q 016476 359 GIVCAFTVAFVSLWVPETKGR 379 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ 379 (389)
++++.+..++.+...++.+++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 458 GLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666665554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.1e-30 Score=230.85 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=211.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhhh
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 81 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 81 (389)
+++++.|+++||+|||+++..+..+.+++.++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHH-HHhcccCCchhhHhcCChhHHHHHHHHHhcCCcchhHHH
Q 016476 82 QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 156 (389)
Q Consensus 82 ~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.+.++|..++|.+++.+ +||+.|++.++..++..+ ..+++||+|++..
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 183 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA-------------------------- 183 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--------------------------
Confidence 999999999999999887 899999988887777655 5566788764210
Q ss_pred HHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhh-cCCCCcc--HHHHHHHHHHHH
Q 016476 157 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVV 233 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 233 (389)
++++.+.++++.++++..+...+...+... .......+.|.+.++ .|.++.. .......++.++
T Consensus 184 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 184 ---------PRTRLLTSYKTLFGNSGFNCYLLMLIGGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp ---------CCCCTTTCSTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ---------ccccHHHHHHHHhcCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 001122334455555544443333333222 233444555555444 4554433 445556788888
Q ss_pred HHHHHHHHHhhhchhHHHHHHhHH-HHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhh
Q 016476 234 ATGVNTWLMDKAGRRLLLLISSSG-MAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 312 (389)
Q Consensus 234 ~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.++.+++.||.+++. ..+... ...+...+...... ....+.......+...+. ....+....+.
T Consensus 251 ~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~ 316 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGA-GMLFPLATSGA 316 (375)
T ss_dssp HHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHH-HHTSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 8999999999988732 222222 11111111111000 001111222222222222 23456666889
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhhhccchhhHHHHH
Q 016476 313 SEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI 360 (389)
Q Consensus 313 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 360 (389)
.|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+...+....
T Consensus 317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99998 889999999999999999999999999988554444444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=2.4e-28 Score=218.74 Aligned_cols=333 Identities=12% Similarity=0.047 Sum_probs=192.8
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHH---HHHHhccch-hHHHHHHHHhhhcccccccccceeeeeccCc--cccc
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~ 75 (389)
++++++|+++||+||||+++++..+.+++. ....+++.. ..+...+.+.|++.+...+.....+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 578999999999999999999888776532 222232221 1234566777776666555555555555543 3557
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc---chHHHHHhhhHHHHHHHHHHhcccCCchhhHhcCChhHHHHHHHHHhcCCcch
Q 016476 76 SLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 152 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
...+......++|..++|.+++.+ +||+.|++.++..++..+..++.+|+|+.. .+.++ + +
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~-~- 201 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVAN-----------A-V- 201 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSSS-----------S-S-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccc---ccccc-----------c-c-
Confidence 777777777788888888888876 799999988776655555545544433210 00000 0 0
Q ss_pred hHHHHHHHHHhhhccccccchHHHHhhcccchhHHHHHHHHHHHhhcChhHHHHHHHHHHhhc-CCC---Ccc--HHHHH
Q 016476 153 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GIS---SSN--VATFG 226 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~--~~~~~ 226 (389)
++++++....++++.++++..+...+....... .+.....+.|.++.+. +.. ... .....
T Consensus 202 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 267 (417)
T 2cfq_A 202 ----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTM 267 (417)
T ss_dssp ----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHH
T ss_pred ----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 000001111233455555544333322221111 1222223344444332 211 111 33344
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHHHhhheeeeeeccccc
Q 016476 227 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 306 (389)
Q Consensus 227 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
..+..+++.++.+++.||++||+.+..+..+.+++...+... . ..........+..... ....+
T Consensus 268 ~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~l~~~~~-~~~~~ 331 (417)
T 2cfq_A 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T------------SALEVVILKTLHMFEV-PFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C------------SHHHHHHHTTHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c------------cHHHHHHHHHHHHHHH-HHHHH
Confidence 456778889999999999999998887776666554433210 0 0111111111111111 11223
Q ss_pred chhhhhccccccchhhhhhhHH-HHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 016476 307 IPWVIMSEILPVNIKSLAGSVA-TLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRS 380 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
..+.+..|.+|++.|+++.+.. +..+.+|+.++|.+.|.+.+ .+....+.+.+++..+..++.....+|+++.+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 3458999999999999999994 88899999999999999988 44445566666666655555555556554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=2.6e-26 Score=212.05 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=108.5
Q ss_pred chhhchHHHHhhh-hhhhHHHHhhHHHHHHHHHHHhcc-chhHHHHHHHHhhhcccccccccceeeeeccCcccccchhh
Q 016476 2 VGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 79 (389)
Q Consensus 2 ig~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 79 (389)
+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 5789999999999 999999999999999999999999 99999999999999999999999999999999999987766
Q ss_pred h---hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHHHhc
Q 016476 80 V---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 121 (389)
Q Consensus 80 ~---~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~~~~ 121 (389)
. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999999999999877 8999999988877666554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=4.7e-13 Score=120.84 Aligned_cols=176 Identities=11% Similarity=-0.030 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHH
Q 016476 188 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 265 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 265 (389)
....+..+.............|.+.++. .+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3333333333333445566677777777 66655 56666788899999999999999999999999998888888777
Q ss_pred HHHHh-hcccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhH
Q 016476 266 SVAFF-LEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTAN 344 (389)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g 344 (389)
.+... ..+ ....+....+.+.+ .....+...+++.|.+|+++|+.++|+.+....+|..++|.+.+
T Consensus 110 ~~~~~~~~~------------~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 110 GFVPWATSS------------IAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHCHHHHSS------------SSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred Hhhhhcccc------------HHHHHHHHHHHHHH-hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64111 011 11222222222222 22344566699999999999999999999999999999999999
Q ss_pred HHhh-hc-cchhhHHHHHHHHHHHHHHHhhcccCC
Q 016476 345 FLLD-WS-SGGTFLIYGIVCAFTVAFVSLWVPETK 377 (389)
Q Consensus 345 ~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+.+ .+ +...+++.+++..+..++..+..||+.
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8777 55 666777777777666666666666543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=1.8e-12 Score=116.58 Aligned_cols=134 Identities=13% Similarity=-0.031 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016476 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.+.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.++........+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----- 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN----- 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 456666778888888888766 5666678888999999999999999999999999988888877633211111
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 016476 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL 347 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 347 (389)
....+....+.+.+. ....+...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.
T Consensus 117 -------~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 -------YTLFLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -------HHHHHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222 2334556699999999999999999999999999999999999998
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.33 E-value=1.5e-12 Score=114.61 Aligned_cols=162 Identities=12% Similarity=0.131 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHhHHHHHHHHHHHHHHhhcccccCC
Q 016476 201 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSED 278 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
........|.+.++.|.++.+ .......++..++.+..|+++||+|||+.+..+..+..++..+.....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 444555667777788887666 556667888999999999999999999999988888888877766431
Q ss_pred ccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHH
Q 016476 279 SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLI 357 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~ 357 (389)
..........+.+.+ .....+....+..|.+|+++|+++++..+....+|..++|.+.+.+.+ .++...+.+
T Consensus 87 ------~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 ------SLTVLIAASAMQGMG-TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 111222222222222 223456667899999999999999999999999999999999999888 455556666
Q ss_pred HHHHHHHHHHHHHhhcccCCC
Q 016476 358 YGIVCAFTVAFVSLWVPETKG 378 (389)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.++...+..+......||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHCcccCC
Confidence 666555554445555665543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.27 E-value=2.5e-11 Score=110.83 Aligned_cols=139 Identities=7% Similarity=0.027 Sum_probs=98.1
Q ss_pred cCCCCcc--HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHhHHHHHHHHHHHHHHhhcccccCCccchhHHHHHHHH
Q 016476 215 AGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLV 291 (389)
Q Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (389)
.|.+..+ .......++..++.++.|+++|| +|||+.+..+..+..++.++.... . .......
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~ 113 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---F------------GASALFG 113 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---C------------STTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---h------------hHHHHHH
Confidence 6776655 55666788899999999999999 899999999988888877766531 0 0111222
Q ss_pred Hhhheeeeeecccccchhhhhccccccch--hhhhhhHHHHHHHHHHHHHHHHhHHHhh-hccchhhHHHHHHHHHHHHH
Q 016476 292 GLVTVVISFSLGVGAIPWVIMSEILPVNI--KSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAF 368 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~ 368 (389)
...+.+.+ .....+...+++.|.+|+++ |+.+.+..+....+|..++|.+.+.+.+ .++...+++.++...+..++
T Consensus 114 ~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 SIILIIIG-TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222222 22334566699999999988 7788888999999999999999999988 55555666655544444333
Q ss_pred H
Q 016476 369 V 369 (389)
Q Consensus 369 ~ 369 (389)
.
T Consensus 193 ~ 193 (491)
T 4aps_A 193 Y 193 (491)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.20 E-value=1.7e-10 Score=106.20 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred HHHHHHHHHH-hhcC------CCCcc--HHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHhHHHHHHHHHHHHHHhhc
Q 016476 203 GVLFYSSNIF-ANAG------ISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSVAFFLE 272 (389)
Q Consensus 203 ~~~~~~~~~~-~~~~------~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
....+.+.++ ++.+ .+..+ .......++..++.++.|+++||+ |||+.+..+..+..++.++.....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444444443 4566 66655 556667888899999999999999 999999988888877776665320
Q ss_pred ccccCCccchhHHHHHHHHHhhheeeeeecccccchhhhhccccccchhhhhhhH---HHHHHHHHHHHHHHHhHHHhh-
Q 016476 273 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSV---ATLANWLVSWIVTMTANFLLD- 348 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~- 348 (389)
...........+.+.+ .....+...+++.|.+|+++|+...+. .+...++|..++|.+.+.+.+
T Consensus 107 -----------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFLIALG-SGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHHHHHH-HHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHHHHHh-ccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0111222222222222 233456667999999999999766665 889999999999999999987
Q ss_pred hccchhhHHHHHHHHHH
Q 016476 349 WSSGGTFLIYGIVCAFT 365 (389)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ 365 (389)
.++...+.+.+++..+.
T Consensus 175 ~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45555566555554443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=1.4e-11 Score=110.01 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=103.7
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhccchhHHHHHHHHhhhcccccccccceeeeeccCcccccchhhh-
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV- 80 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~- 80 (389)
++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+++.+.
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4678899999999999999999999888888888888888888888888888776667778899999999999999988
Q ss_pred hHHHHHHHHHHHHHhcccc----chHHHHHhhhHHHHHHHHH-HhcccCCc
Q 016476 81 NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 126 (389)
Q Consensus 81 ~~~~~~lG~~l~~~i~~~~----~wr~~f~~~~~~~~~~~~~-~~~~~e~p 126 (389)
++....+|.+++|.+++.+ +++..|.+.++.+++..+. ....||++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4888889999999998876 7888888888777776544 44466654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.96 E-value=7.8e-10 Score=100.88 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=88.1
Q ss_pred chhhchHHHHhhhhhhhHHHHhhHHHHHHHHHHHhcc-----chhHHH-HHHHHhhhcccccccccceeeeeccCccccc
Q 016476 2 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-----DSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 75 (389)
Q Consensus 2 ig~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 75 (389)
++.++.+++.||+|||+.++.+.....++.+..+... +...+. ..-+..+++. ...+....+.+|.+|.+.|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHH
T ss_pred HHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHH
Confidence 4678899999999999999999888888777665431 111122 1222222222 33466778899999999999
Q ss_pred chhhhhHHHHHHHHHHHHHhcccc----------chHHHHHhhhHHHHHH-HHHHhcccCCc
Q 016476 76 SLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL-IPGLFFIPESP 126 (389)
Q Consensus 76 ~~~~~~~~~~~lG~~l~~~i~~~~----------~wr~~f~~~~~~~~~~-~~~~~~~~e~p 126 (389)
+++++......+|.++++.+...+ ++...|++.+.++++. ++.++++||++
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999888888877655433 4556777777777666 45567899985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=76.28 E-value=1.3 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.6
Q ss_pred chHHHHhhhhhhhH
Q 016476 6 ASGQIAEYIGRKGS 19 (389)
Q Consensus 6 ~~g~l~dr~Grr~~ 19 (389)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=25.22 E-value=30 Score=16.06 Aligned_cols=12 Identities=25% Similarity=0.102 Sum_probs=7.9
Q ss_pred hchHHHHhhhhh
Q 016476 5 IASGQIAEYIGR 16 (389)
Q Consensus 5 ~~~g~l~dr~Gr 16 (389)
++.-+.+.||||
T Consensus 2 p~~~~~A~rYGR 13 (27)
T 2bzw_B 2 PPNLWAAQRYGR 13 (27)
T ss_dssp CGGGHHHHHHHH
T ss_pred chhHHHHHHHhH
Confidence 445567777776
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.58 E-value=76 Score=15.86 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=7.2
Q ss_pred HHHhcccCCch
Q 016476 117 PGLFFIPESPR 127 (389)
Q Consensus 117 ~~~~~~~e~p~ 127 (389)
....+.+|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 44456788885
Done!