BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016477
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189
V WT EE LF GL K G+ W I++ + SRT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 133 HMDVN--KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 181
HM N K+Q WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 3 HMTTNITKKQ---KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 135 DVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 181
++ K+Q WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 7 NITKKQ---KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 135 DVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 181
++ K+Q WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 6 NITKKQ---KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 135 DVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 181
++ K+Q WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 10 NITKKQ---KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 35.4 bits (80), Expect = 0.061, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 181
WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189
WT +E L + G G+W+ +A N + ++T + H KYF
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGI 168
WT+EE LIG+ K G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGI 168
WT+EE LIG+ K G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 145 WTEEEHR-----LFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNA 195
WT EE + L +++ W+ IA + + +RT QVAS QKYFI+ + A
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTKA 65
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 190
W +E L + + LG G+W IA +RT + H K +I
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|2ZW2|A Chain A, Crystal Structure Of Formylglycinamide Ribonucleotide
Amidotransferase Iii From Sulfolobus Tokodaii (Stpurs)
pdb|2ZW2|B Chain B, Crystal Structure Of Formylglycinamide Ribonucleotide
Amidotransferase Iii From Sulfolobus Tokodaii (Stpurs)
Length = 92
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 150 HRLFLIGLQKLGKGDWRG-IARNYVMSRTPTQV-ASHAQKYFIRQSNATRRKRRSSLFDM 207
+R+ LI K G D G + YV+SR ++ + A KY + + N++ ++ + L
Sbjct: 6 YRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVKK 65
Query: 208 VADDMATDTPPV 219
+AD+M P V
Sbjct: 66 LADEMRLYNPIV 77
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQK 187
WT EE +++ G DW+ IA NY+ +RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 145 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQK 187
WT EE +++ G DW+ IA NY+ +RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,949,577
Number of Sequences: 62578
Number of extensions: 358482
Number of successful extensions: 640
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 19
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)