Query 016477
Match_columns 389
No_of_seqs 249 out of 510
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.7 4.1E-18 8.8E-23 130.1 6.0 51 142-192 3-57 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.4 6.3E-13 1.4E-17 95.9 5.5 45 143-188 2-47 (48)
3 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 5.2E-10 1.1E-14 75.7 5.5 45 144-189 1-45 (45)
4 smart00717 SANT SANT SWI3, AD 99.0 5.3E-10 1.2E-14 76.4 5.3 46 143-189 2-47 (49)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.6 9.4E-08 2E-12 70.9 4.7 42 145-188 1-42 (60)
6 KOG0457 Histone acetyltransfer 98.5 1.5E-07 3.2E-12 96.3 6.5 51 142-193 72-122 (438)
7 KOG0724 Zuotin and related mol 98.3 4.4E-07 9.4E-12 87.5 2.8 76 138-213 160-240 (335)
8 KOG4329 DNA-binding protein [G 98.2 8.9E-06 1.9E-10 82.6 10.3 52 141-196 276-327 (445)
9 PLN03212 Transcription repress 98.1 5.4E-06 1.2E-10 80.1 6.3 48 142-189 25-72 (249)
10 PLN03091 hypothetical protein; 97.9 1.2E-05 2.6E-10 82.9 5.3 48 142-189 14-61 (459)
11 COG5114 Histone acetyltransfer 97.8 1.5E-05 3.3E-10 80.1 4.6 61 142-210 63-123 (432)
12 COG5259 RSC8 RSC chromatin rem 97.8 1.5E-05 3.2E-10 82.9 4.6 43 141-185 278-320 (531)
13 KOG1279 Chromatin remodeling f 97.8 2.5E-05 5.4E-10 81.7 5.5 49 135-185 246-294 (506)
14 PLN03212 Transcription repress 97.5 0.00015 3.4E-09 70.2 6.2 48 141-190 77-124 (249)
15 PLN03091 hypothetical protein; 97.4 0.00041 8.9E-09 72.0 7.3 48 142-191 67-114 (459)
16 KOG0048 Transcription factor, 96.8 0.0012 2.6E-08 62.1 4.2 46 142-188 9-55 (238)
17 PLN03162 golden-2 like transcr 96.7 0.0031 6.7E-08 65.0 6.1 57 138-194 233-292 (526)
18 KOG0049 Transcription factor, 96.1 0.0083 1.8E-07 65.3 5.6 47 141-188 359-405 (939)
19 KOG4167 Predicted DNA-binding 95.9 0.017 3.6E-07 63.5 7.0 47 142-193 619-665 (907)
20 KOG0048 Transcription factor, 95.7 0.028 6.1E-07 53.0 6.5 42 142-185 62-103 (238)
21 KOG3554 Histone deacetylase co 95.4 0.016 3.4E-07 61.4 4.1 58 132-193 275-332 (693)
22 COG5118 BDP1 Transcription ini 95.0 0.038 8.3E-07 57.3 5.4 44 138-183 361-404 (507)
23 KOG0049 Transcription factor, 94.9 0.029 6.3E-07 61.3 4.5 45 142-187 412-456 (939)
24 KOG0724 Zuotin and related mol 94.6 0.0082 1.8E-07 58.3 -0.3 50 143-194 54-103 (335)
25 KOG4468 Polycomb-group transcr 94.6 0.049 1.1E-06 59.1 5.1 51 142-193 88-147 (782)
26 PF00098 zf-CCHC: Zinc knuckle 93.9 0.045 9.6E-07 33.7 2.0 18 3-20 1-18 (18)
27 PLN03142 Probable chromatin-re 93.9 0.084 1.8E-06 60.0 5.6 48 144-192 826-873 (1033)
28 KOG3841 TEF-1 and related tran 93.8 0.31 6.7E-06 50.7 8.8 64 142-210 76-159 (455)
29 smart00426 TEA TEA domain. 93.5 0.087 1.9E-06 42.7 3.5 44 142-186 3-66 (68)
30 PF13837 Myb_DNA-bind_4: Myb/S 92.4 0.3 6.5E-06 38.2 5.1 45 143-188 2-63 (90)
31 PF15288 zf-CCHC_6: Zinc knuck 91.5 0.099 2.2E-06 38.6 1.3 21 3-23 2-24 (40)
32 PF14392 zf-CCHC_4: Zinc knuck 91.3 0.078 1.7E-06 39.2 0.6 19 1-19 30-48 (49)
33 KOG0050 mRNA splicing protein 89.5 0.34 7.4E-06 52.0 3.7 47 142-189 7-53 (617)
34 PF01285 TEA: TEA/ATTS domain 89.0 0.39 8.5E-06 50.0 3.7 46 142-188 49-112 (431)
35 KOG1194 Predicted DNA-binding 88.9 0.74 1.6E-05 48.9 5.6 41 141-183 186-226 (534)
36 PF09111 SLIDE: SLIDE; InterP 87.6 0.97 2.1E-05 39.6 4.7 46 141-186 48-107 (118)
37 KOG0051 RNA polymerase I termi 81.1 2.1 4.5E-05 46.7 4.7 50 140-190 434-508 (607)
38 smart00343 ZnF_C2HC zinc finge 78.2 1.2 2.6E-05 28.7 1.1 18 4-21 1-18 (26)
39 KOG4282 Transcription factor G 69.9 9.6 0.00021 37.6 5.6 51 143-193 55-117 (345)
40 COG5147 REB1 Myb superfamily p 69.8 3.3 7.1E-05 44.5 2.5 51 140-191 18-68 (512)
41 PLN03142 Probable chromatin-re 66.3 14 0.0003 42.8 6.6 47 142-188 926-983 (1033)
42 COG5147 REB1 Myb superfamily p 66.2 7.1 0.00015 42.0 4.1 51 141-193 71-121 (512)
43 PF13873 Myb_DNA-bind_5: Myb/S 65.5 18 0.00039 28.0 5.3 46 143-188 3-68 (78)
44 KOG2009 Transcription initiati 65.5 4.9 0.00011 43.8 2.8 48 139-191 406-453 (584)
45 PF12776 Myb_DNA-bind_3: Myb/S 64.4 18 0.00039 28.6 5.2 44 144-187 1-60 (96)
46 KOG0385 Chromatin remodeling c 62.9 11 0.00025 42.8 5.1 51 142-194 795-845 (971)
47 PF04504 DUF573: Protein of un 61.6 24 0.00051 29.8 5.6 41 142-183 4-56 (98)
48 COG5082 AIR1 Arginine methyltr 60.3 4.9 0.00011 38.3 1.5 20 2-21 97-117 (190)
49 PF08914 Myb_DNA-bind_2: Rap1 59.0 19 0.00042 28.6 4.4 49 142-190 2-58 (65)
50 KOG0051 RNA polymerase I termi 56.4 15 0.00032 40.5 4.4 47 141-190 383-429 (607)
51 PF06461 DUF1086: Domain of Un 53.3 36 0.00078 31.4 5.8 49 144-193 40-90 (145)
52 PF13248 zf-ribbon_3: zinc-rib 52.8 8.9 0.00019 25.1 1.4 21 1-21 1-22 (26)
53 KOG0384 Chromodomain-helicase 39.4 25 0.00055 41.7 3.2 28 141-168 1132-1159(1373)
54 KOG0050 mRNA splicing protein 39.4 31 0.00067 37.8 3.6 44 142-188 59-102 (617)
55 PF00191 Annexin: Annexin; In 39.1 39 0.00084 25.1 3.2 41 150-192 3-43 (66)
56 PF14952 zf-tcix: Putative tre 35.8 22 0.00048 27.0 1.4 19 3-21 12-31 (44)
57 PF11035 SnAPC_2_like: Small n 35.2 1.1E+02 0.0024 31.8 6.6 49 142-191 21-72 (344)
58 COG5082 AIR1 Arginine methyltr 34.5 21 0.00044 34.2 1.3 17 3-19 61-77 (190)
59 PF13325 MCRS_N: N-terminal re 32.0 65 0.0014 31.0 4.1 50 138-187 69-124 (199)
60 PF13696 zf-CCHC_2: Zinc knuck 29.2 27 0.00057 24.9 0.8 19 3-21 9-27 (32)
61 PHA00442 host recBCD nuclease 28.4 60 0.0013 26.0 2.7 25 146-170 24-48 (59)
62 KOG4400 E3 ubiquitin ligase in 28.2 42 0.00091 32.1 2.3 18 4-21 145-162 (261)
63 PTZ00368 universal minicircle 27.7 40 0.00087 29.4 1.8 19 3-21 78-96 (148)
64 PF08074 CHDCT2: CHDCT2 (NUC03 27.0 38 0.00083 32.1 1.7 28 142-169 3-30 (173)
65 PTZ00368 universal minicircle 26.4 45 0.00097 29.1 1.9 20 3-22 53-72 (148)
66 PF10571 UPF0547: Uncharacteri 26.0 34 0.00074 23.0 0.9 9 2-10 14-22 (26)
67 KOG1194 Predicted DNA-binding 25.7 1E+02 0.0022 33.6 4.6 45 142-188 369-413 (534)
68 PF13917 zf-CCHC_3: Zinc knuck 24.8 44 0.00096 24.9 1.3 19 2-20 4-22 (42)
69 PF02509 Rota_NS35: Rotavirus 23.5 28 0.00061 35.3 0.2 53 142-202 194-255 (316)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.73 E-value=4.1e-18 Score=130.12 Aligned_cols=51 Identities=49% Similarity=0.722 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCH---HHHHhhhcCCC-CHHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDW---RGIARNYVMSR-TPTQVASHAQKYFIRQ 192 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdW---k~IAr~fV~TR-Tp~QVrSHAQKYF~rl 192 (389)
+..||+|||++||+||+.||.|+| +.|++.++.|| |+.||+||+||||+++
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 678999999999999999999999 99997777789 9999999999999864
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=6.3e-13 Score=95.88 Aligned_cols=45 Identities=40% Similarity=0.649 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKY 188 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~-TRTp~QVrSHAQKY 188 (389)
..||+||+.+|++|+++||.++|+.|| .+|+ +||..||++|+++|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia-~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIA-KRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHH-HHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHH-HHcCCCCCHHHHHHHHHhh
Confidence 489999999999999999997799999 6777 99999999999987
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.03 E-value=5.2e-10 Score=75.68 Aligned_cols=45 Identities=40% Similarity=0.733 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 144 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 144 ~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.||+||+..|+.++.+||.++|..|+ .++++||..||+.|+++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia-~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIA-KELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHH-hHcCCCCHHHHHHHHHHhC
Confidence 59999999999999999966999999 6999999999999987763
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.02 E-value=5.3e-10 Score=76.42 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..||+||..+|+.++.+||.++|..|| .++++||+.||+.++.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia-~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIA-KELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 589999999999999999966999999 6899999999999887664
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.55 E-value=9.4e-08 Score=70.93 Aligned_cols=42 Identities=38% Similarity=0.655 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 145 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 145 WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
||+||.++++.++++||. +|..|| .++++||+.||+.+.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIA-EHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHH-HHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHH-HHHCcCCHHHHHHHHHHH
Confidence 999999999999999996 999999 578999999999988764
No 6
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.52 E-value=1.5e-07 Score=96.28 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
...||.+|..+||+|++.||-|+|..|| ++|+|||..+|+.|+-|+|+...
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s~ 122 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNSP 122 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcCc
Confidence 5689999999999999999999999999 79999999999999999999754
No 7
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.4e-07 Score=87.51 Aligned_cols=76 Identities=47% Similarity=0.648 Sum_probs=69.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHH-----HHHHHHhhhccccCCCCccccccCCC
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQ-----KYFIRQSNATRRKRRSSLFDMVADDM 212 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQ-----KYF~rl~~~~krKrRsSL~Div~d~~ 212 (389)
.++.+..|++.+|++|+.++.+||+++|..|+++++.+|++.|+.+|+| +||.+.....+.++|.+++|+.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 239 (335)
T KOG0724|consen 160 LRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASE 239 (335)
T ss_pred hhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccch
Confidence 3444889999999999999999999999999999999999999999999 99999998888999999999988843
Q ss_pred C
Q 016477 213 A 213 (389)
Q Consensus 213 ~ 213 (389)
.
T Consensus 240 ~ 240 (335)
T KOG0724|consen 240 A 240 (335)
T ss_pred h
Confidence 3
No 8
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=98.19 E-value=8.9e-06 Score=82.64 Aligned_cols=52 Identities=31% Similarity=0.457 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhc
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNAT 196 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~ 196 (389)
-.-.|+++|++.|.+||+.||| ||..|.++-|.||+...|.- -||++.+..+
T Consensus 276 ~l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVe---yYYlWKkSer 327 (445)
T KOG4329|consen 276 DLSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVE---YYYLWKKSER 327 (445)
T ss_pred ccccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHH---HHHHhhcCcc
Confidence 3558999999999999999999 99999999999999999965 3666655433
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.09 E-value=5.4e-06 Score=80.10 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
+.+||+||.+++++++++||.++|+.||+.+...||..||+.+..+|+
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 669999999999999999999899999953336999999999988886
No 10
>PLN03091 hypothetical protein; Provisional
Probab=97.91 E-value=1.2e-05 Score=82.93 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.+.||.||.+++++++++||.++|..||+.+...||..|||.+..+|+
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 568999999999999999999999999953335899999999877664
No 11
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.85 E-value=1.5e-05 Score=80.05 Aligned_cols=61 Identities=30% Similarity=0.546 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhccccCCCCccccccC
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVAD 210 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~krKrRsSL~Div~d 210 (389)
..-|+.+|..+|+++++.+|-|+|..|| .||++|+-..|++|+-|||+.- +-+-|-||+..
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~es-------~~ypl~~i~~~ 123 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYDES-------KYYPLPDITQN 123 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHhhc-------ccccccccccC
Confidence 4589999999999999999999999999 7999999999999999999853 35556666655
No 12
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.85 E-value=1.5e-05 Score=82.90 Aligned_cols=43 Identities=30% Similarity=0.520 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
....||.+|..++|+||+.||. ||.+|| .+|+|||+.||--|.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA-~HVgtKt~EqCIl~F 320 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVA-RHVGTKTKEQCILHF 320 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHH-HHhCCCCHHHHHHHH
Confidence 3558999999999999999999 999999 699999999998864
No 13
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.80 E-value=2.5e-05 Score=81.72 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=44.4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 135 DVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 135 p~~~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
+......+..||++|-.++|+|+++||. ||.+|+ .+|+|||..||-.|.
T Consensus 246 ~~~~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kF 294 (506)
T KOG1279|consen 246 KVIGESARPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKF 294 (506)
T ss_pred hhccccCCCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHH
Confidence 4456667889999999999999999999 999999 799999999999875
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.54 E-value=0.00015 Score=70.21 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
...+||+||.++.++....||. .|..|| .+++.||..||+.+...++.
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IA-k~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIA-GRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHH-hhcCCCCHHHHHHHHHHHHh
Confidence 3579999999999999999997 899999 69999999999988765543
No 15
>PLN03091 hypothetical protein; Provisional
Probab=97.38 E-value=0.00041 Score=71.95 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
.++||+||.+++++..++||. .|..|| .+++.||..||+.+.....+|
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIA-k~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIA-AQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHH-HhcCCCCHHHHHHHHHHHHHH
Confidence 569999999999999999998 899999 699999999999887654443
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.83 E-value=0.0012 Score=62.05 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~-TRTp~QVrSHAQKY 188 (389)
.++||.||..++..-+++||.|.|..|+ ...+ -|+-.|||-..-.|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~-k~~gl~R~GKSCRlRW~Ny 55 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALP-KLAGLRRCGKSCRLRWTNY 55 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhh-hhcCCCccchHHHHHhhcc
Confidence 4799999999999999999999999999 5778 99999999977666
No 17
>PLN03162 golden-2 like transcription factor; Provisional
Probab=96.68 E-value=0.0031 Score=64.97 Aligned_cols=57 Identities=33% Similarity=0.399 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC--CCHHHHHh-hhcCCCCHHHHHHHHHHHHHHHhh
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGK--GDWRGIAR-NYVMSRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGk--GdWk~IAr-~fV~TRTp~QVrSHAQKYF~rl~~ 194 (389)
+++.+..||.|=|++|+++++++|. --=|+|-+ .-|..-|..+|+||-|||...+.+
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 4555789999999999999999993 11234431 236678999999999999776653
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.12 E-value=0.0083 Score=65.35 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
.-++||.+|..+++.|+.+||..||-+|- ..|+.|+-.|||..+-..
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNV 405 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHH
Confidence 35699999999999999999999999997 799999999999965543
No 19
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=95.94 E-value=0.017 Score=63.54 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
...||..|.++|-.||-.|-| ||..|+ ..|+|||..||. |-||.+.+
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~-km~~~KtVaqCV---eyYYtWKK 665 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQ-KMVKSKTVAQCV---EYYYTWKK 665 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHH-HHhccccHHHHH---HHHHHHHH
Confidence 458999999999999999999 999999 699999999995 45666654
No 20
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.66 E-value=0.028 Score=53.01 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
++.||+||.++.+++=.+||- .|..|| .+++.||--.|+.|-
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN-rWs~IA-~~LPGRTDNeIKN~W 103 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN-RWSLIA-GRLPGRTDNEVKNHW 103 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-HHHHHH-hhCCCcCHHHHHHHH
Confidence 679999999999999999997 899999 699999999997764
No 21
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=95.36 E-value=0.016 Score=61.35 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=47.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 132 LHMDVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 132 ~~~p~~~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
+..|+-=+-...-|+..|-.+|.++|+|||| ||..|.++|++=++.+-|.. -||++..
T Consensus 275 lGGPvLCRDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIve---yYYmwKt 332 (693)
T KOG3554|consen 275 LGGPVLCRDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVE---YYYMWKT 332 (693)
T ss_pred CCCceeehhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHH---HHHHHhh
Confidence 5556655666788999999999999999999 99999999999998877754 4555433
No 22
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=94.99 E-value=0.038 Score=57.29 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHH
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVAS 183 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrS 183 (389)
+++...+||.+|-.+|..||..+|- ||..|+ +..++|...||..
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKa 404 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKA 404 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHH
Confidence 3455779999999999999999999 999999 8999999999986
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.90 E-value=0.029 Score=61.34 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQK 187 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQK 187 (389)
...||-.|.++++..+++||+|.|-+|| .|++-||..|.++.-..
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA-~~Lp~~t~~q~~rrR~R 456 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCA-MLLPKKTSRQLRRRRLR 456 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHH-HHccccchhHHHHHHHH
Confidence 6699999999999999999999999999 89999999998875543
No 24
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.0082 Score=58.26 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhh
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~ 194 (389)
..||++||..|.++|..| +..|+.|- .|++.++..|+++|+|+||-+...
T Consensus 54 ~~~t~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~v~~~~~~~~~~p~~~~ 103 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLE-KRLEDKIE-EYIGLVFDVNIRESGQKPFPKYGK 103 (335)
T ss_pred cccchhhhhHHHhcCccc-cccchhHH-hhhhhHHHHhhhhccCCCccccCc
Confidence 359999999999999999 55999998 799999999999999999988764
No 25
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=94.55 E-value=0.049 Score=59.07 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHH---------HhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGI---------ARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~I---------Ar~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
.+.||..|..-|..||+.+|| ||..| +..-+..+|--||+-||.+-..++.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 669999999999999999999 99999 2245677888999887765555443
No 26
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=93.92 E-value=0.045 Score=33.70 Aligned_cols=18 Identities=44% Similarity=1.184 Sum_probs=16.7
Q ss_pred CcCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~ 20 (389)
|+|-.|+..||-++.||.
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 689999999999999984
No 27
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.92 E-value=0.084 Score=60.00 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 144 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 144 ~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
.||..+-..|+.|.++||+.|...|| ..|.++|+.+|+.+++-|+.|.
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~-~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIA-SEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHH-HHhcCCCHHHHHHHHHHHHHhh
Confidence 59999999999999999999999999 7999999999999998887663
No 28
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=93.78 E-value=0.31 Score=50.72 Aligned_cols=64 Identities=30% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---------------CCHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHhhhccccCC
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK---------------GDWRGIARNYV-----MSRTPTQVASHAQKYFIRQSNATRRKRR 201 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk---------------GdWk~IAr~fV-----~TRTp~QVrSHAQKYF~rl~~~~krKrR 201 (389)
.+.|+++=.+.|+|||..|.. |+=..||| || +|||..||.||-|=.-+|.. |+-.
T Consensus 76 egvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~----reiq 150 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKL----REIQ 150 (455)
T ss_pred ccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHH----HHHH
Confidence 668999999999999998743 55678895 77 58999999999996533332 2334
Q ss_pred CCccccccC
Q 016477 202 SSLFDMVAD 210 (389)
Q Consensus 202 sSL~Div~d 210 (389)
..|.|.+..
T Consensus 151 ~klk~~~sK 159 (455)
T KOG3841|consen 151 AKLKDQSSK 159 (455)
T ss_pred hhhhcccch
Confidence 445555544
No 29
>smart00426 TEA TEA domain.
Probab=93.50 E-value=0.087 Score=42.74 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHH---------------HHHhhhc-----CCCCHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWR---------------GIARNYV-----MSRTPTQVASHAQ 186 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk---------------~IAr~fV-----~TRTp~QVrSHAQ 186 (389)
...|.++=...|++||+.|-+-.++ .|+ +|+ ..||..||.||-|
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs-~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHH-HHHHHHhCCccchhhhcchhe
Confidence 3579999999999999988652222 344 344 4699999999987
No 30
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=92.41 E-value=0.3 Score=38.23 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHH------cC-----CC--CHHHHHhhhcC----CCCHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQK------LG-----KG--DWRGIARNYVM----SRTPTQVASHAQKY 188 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLek------yG-----kG--dWk~IAr~fV~----TRTp~QVrSHAQKY 188 (389)
..||++|...||..+.. |+ ++ -|+.||. .+. .||+.||+..-..-
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999998876 32 12 5999995 432 79999999866443
No 31
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=91.49 E-value=0.099 Score=38.57 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=18.2
Q ss_pred CcCCCCCCCCCC--CCCCCCCCC
Q 016477 3 RRCSHCSNNGHN--SRTCPTRGG 23 (389)
Q Consensus 3 r~cs~c~~~ghn--srtc~~~~~ 23 (389)
+||..||..||. +++||-...
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~~ 24 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYCW 24 (40)
T ss_pred ccccccccccccccCccCCCCCC
Confidence 799999999995 599998754
No 32
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=91.29 E-value=0.078 Score=39.21 Aligned_cols=19 Identities=42% Similarity=1.125 Sum_probs=17.2
Q ss_pred CCCcCCCCCCCCCCCCCCC
Q 016477 1 MTRRCSHCSNNGHNSRTCP 19 (389)
Q Consensus 1 m~r~cs~c~~~ghnsrtc~ 19 (389)
+.+.|.+||..||+.+.|+
T Consensus 30 lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 30 LPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred cChhhcCCCCcCcCHhHcC
Confidence 4578999999999999997
No 33
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.49 E-value=0.34 Score=52.02 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
++.|+.-|.+..-.+..+||+..|..|+ ....-+|+.||....-+|.
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~-sll~~kt~rqC~~rw~e~l 53 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIA-SLLNRKTARQCKARWEEWL 53 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHH-HHHhhcchhHHHHHHHHHh
Confidence 7899999999999999999999999999 7999999999998777664
No 34
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=88.98 E-value=0.39 Score=49.98 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-------------CCHHHHHhhhc-----CCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK-------------GDWRGIARNYV-----MSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk-------------GdWk~IAr~fV-----~TRTp~QVrSHAQKY 188 (389)
...|+++=+..|++||++|-+ |+=..|+ .|| ++||..||.||.|-.
T Consensus 49 ~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~-~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 49 EGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELIS-DYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp S--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHH-HHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHH-HHHHHHhCcccchhHHHHHHHHH
Confidence 568999999999999999855 2334566 455 469999999999965
No 35
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=88.90 E-value=0.74 Score=48.90 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVAS 183 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrS 183 (389)
.--.||.||.-+|..+.+.||+ +|++|. ..++-|+..-++-
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIr-q~LP~rsLaSlvq 226 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIR-QALPHRSLASLVQ 226 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHH-HHccCccHHHHHH
Confidence 3458999999999999999999 999998 7999999877654
No 36
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=87.57 E-value=0.97 Score=39.57 Aligned_cols=46 Identities=33% Similarity=0.564 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCHHHHHh-----------hhcCCCCHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGK---GDWRGIAR-----------NYVMSRTPTQVASHAQ 186 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGk---GdWk~IAr-----------~fV~TRTp~QVrSHAQ 186 (389)
.+..||+||.+-.|..+.+||- |.|..|-+ -|++|||+..+.=++.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~ 107 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN 107 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence 3568999999999999999999 99999964 4789999999988775
No 37
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.09 E-value=2.1 Score=46.73 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHH-------Hc-------CC-----------CCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 140 QIGVPWTEEEHRLFLIGLQ-------KL-------GK-----------GDWRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 140 ~~~~~WTeEEH~lFLeGLe-------ky-------Gk-----------GdWk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
+.+.+||.||.+++|..++ .| |. =.|..|+ ..++||+..||+.|.+|-..
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vs-e~~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVS-EMLGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhh-HhhcCCCcchHHHHHHHHHh
Confidence 4567999999999999885 33 11 1699999 59999999999987776543
No 38
>smart00343 ZnF_C2HC zinc finger.
Probab=78.18 E-value=1.2 Score=28.73 Aligned_cols=18 Identities=39% Similarity=1.139 Sum_probs=16.0
Q ss_pred cCCCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~~~ 21 (389)
+|..|+..||.++.|+..
T Consensus 1 ~C~~CG~~GH~~~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIARDCPKX 18 (26)
T ss_pred CCccCCCCCcchhhCCcc
Confidence 599999999999999844
No 39
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=69.86 E-value=9.6 Score=37.57 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHH----cCCC-----CHHHHHhh---hcCCCCHHHHHHHHHHHHHHHh
Q 016477 143 VPWTEEEHRLFLIGLQK----LGKG-----DWRGIARN---YVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLek----yGkG-----dWk~IAr~---fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
..|+++|-+.+|+.... |..+ .|..||+. .---||+.||+.-.-+-.++.+
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk 117 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK 117 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998774 3333 59999963 3456999999986544433333
No 40
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=69.85 E-value=3.3 Score=44.47 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 140 QIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 140 ~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
...+.|+..|....+-+.++||...|-.||..|+. ||..||+.|-..|...
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp 68 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNP 68 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhch
Confidence 34669999999999889999999999999955555 9999999987555443
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=66.31 E-value=14 Score=42.83 Aligned_cols=47 Identities=34% Similarity=0.612 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHh-----------hhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIAR-----------NYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr-----------~fV~TRTp~QVrSHAQKY 188 (389)
+..||+||.+-.|-.+.+||-|.|..|-. -|+++||+..+.-++.--
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 45799999999999999999999999942 478999999998887643
No 42
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=66.17 E-value=7.1 Score=41.99 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
....|++||....+..=..+|- .|..|+ .++..||..||...+.+-+....
T Consensus 71 k~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~~~~ 121 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLEDLS 121 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhhhhh
Confidence 4668999999999999999998 799999 79999999999765555444443
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=65.54 E-value=18 Score=28.01 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHc-----CC-----------CCHHHHHhhh----cCCCCHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQKL-----GK-----------GDWRGIARNY----VMSRTPTQVASHAQKY 188 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLeky-----Gk-----------GdWk~IAr~f----V~TRTp~QVrSHAQKY 188 (389)
..||.+|...+++-+++| |+ .-|..|+..| .+.||..|++-..+++
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nl 68 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNL 68 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 479999999999999986 42 2599998644 2379999997644443
No 44
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=65.52 E-value=4.9 Score=43.81 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 139 RQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 139 ~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
+.....||.+|-.+|..+|..+|- ++..|+ +....|+..||+- ||-++
T Consensus 406 ~~~~~~w~~se~e~fyka~~~~gs-~~slis-~l~p~R~rk~iK~---K~~~e 453 (584)
T KOG2009|consen 406 KLETDKWDASETELFYKALSERGS-DFSLIS-NLFPLRDRKQIKA---KFKKE 453 (584)
T ss_pred ccccCcccchhhHHhhhHHhhhcc-cccccc-cccccccHHHHHH---HHhhh
Confidence 334679999999999999999998 999999 8999999999975 55433
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=64.37 E-value=18 Score=28.62 Aligned_cols=44 Identities=30% Similarity=0.532 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHc---C----CC-----CHHHHHhhh----cCCCCHHHHHHHHHH
Q 016477 144 PWTEEEHRLFLIGLQKL---G----KG-----DWRGIARNY----VMSRTPTQVASHAQK 187 (389)
Q Consensus 144 ~WTeEEH~lFLeGLeky---G----kG-----dWk~IAr~f----V~TRTp~QVrSHAQK 187 (389)
.||+++.+.||+.|... | .+ .|+.|++.| -...|..||.+|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 49999999999999643 1 11 488887544 345689999999653
No 46
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=62.90 E-value=11 Score=42.82 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~ 194 (389)
-+.||+.+-..|+.|-++||++|-..|++ -|-. |+..|..+|.-||.+++.
T Consensus 795 ft~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~e 845 (971)
T KOG0385|consen 795 FTNWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLEE 845 (971)
T ss_pred ccchhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999995 5554 999999999988888764
No 47
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=61.57 E-value=24 Score=29.81 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHc----CC---CCHHHHHhhhcCCC-----CHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKL----GK---GDWRGIARNYVMSR-----TPTQVAS 183 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLeky----Gk---GdWk~IAr~fV~TR-----Tp~QVrS 183 (389)
...||+|+...+|+||-.| |. -||...- .+|.-. |..|+..
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~ 56 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYD 56 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHH
Confidence 4579999999999999988 64 2777766 455443 5566644
No 48
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=60.32 E-value=4.9 Score=38.29 Aligned_cols=20 Identities=40% Similarity=1.155 Sum_probs=16.7
Q ss_pred CCcCCCCCCCCCCCCCC-CCC
Q 016477 2 TRRCSHCSNNGHNSRTC-PTR 21 (389)
Q Consensus 2 ~r~cs~c~~~ghnsrtc-~~~ 21 (389)
.-+|.+||-+||-+|-| |..
T Consensus 97 ~~~C~~Cg~~GH~~~dC~P~~ 117 (190)
T COG5082 97 PKKCYNCGETGHLSRDCNPSK 117 (190)
T ss_pred ccccccccccCccccccCccc
Confidence 35799999999999999 554
No 49
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=59.04 E-value=19 Score=28.59 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCC------C--CHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK------G--DWRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk------G--dWk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
+++.|+||...++.-|..+.+ | -|+.+++.++..+|-.=-+.|.-|...
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 468999999999999965532 3 499999888878888778887766543
No 50
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=56.38 E-value=15 Score=40.50 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
.++.||+||.+.+..-....|. +|..|+ ..+ .|.|.-|+.+-..|-.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig-~~l-gr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIG-KAL-GRMPMDCRDRWRQYVK 429 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHH-HHH-ccCcHHHHHHHHHhhc
Confidence 4679999999999999999997 999999 455 4778899998887743
No 51
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=53.25 E-value=36 Score=31.44 Aligned_cols=49 Identities=12% Similarity=0.379 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHcCCC--CHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 144 PWTEEEHRLFLIGLQKLGKG--DWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 144 ~WTeEEH~lFLeGLekyGkG--dWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
-++..+.+.||.++.+||-| ||+.+- .-+.-+|..+++.++-=|+.++.
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~-~~Lr~Ks~~ei~aY~~LFm~HL~ 90 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFV-PRLRGKSEKEIRAYGSLFMRHLC 90 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHh-hhhccccHHHHHHHHHHHHHHhc
Confidence 57899999999999999997 899888 58899999999999976666555
No 52
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=52.75 E-value=8.9 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.716 Sum_probs=16.1
Q ss_pred CCCcCCCCCCC-CCCCCCCCCC
Q 016477 1 MTRRCSHCSNN-GHNSRTCPTR 21 (389)
Q Consensus 1 m~r~cs~c~~~-ghnsrtc~~~ 21 (389)
|.+.|.+||.. --..+-|+.=
T Consensus 1 m~~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 1 MEMFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred CcCCCcccCCcCCcccccChhh
Confidence 88999999984 3366778764
No 53
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=39.45 E-value=25 Score=41.74 Aligned_cols=28 Identities=36% Similarity=0.821 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGI 168 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~I 168 (389)
....|..||...||.|+-+||.|.|..|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~I 1159 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAI 1159 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHh
Confidence 5778999999999999999999999998
No 54
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=39.37 E-value=31 Score=37.83 Aligned_cols=44 Identities=27% Similarity=0.402 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
.+-|+.||.++.|+....+.. .|+-|+ =+-.||..||--++++-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa--~i~gr~~~qc~eRy~~l 102 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIA--DIMGRTSQQCLERYNNL 102 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHH--HHhhhhHHHHHHHHHHH
Confidence 568999999999999999998 999999 35569999998877654
No 55
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=39.07 E-value=39 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 150 HRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 150 H~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
-+.+-.|+...|..++.-|. .+.||+..|++.=.+.|...-
T Consensus 3 A~~l~~a~~~~g~de~~li~--Il~~rs~~ql~~i~~~Y~~~~ 43 (66)
T PF00191_consen 3 AELLHAALKGWGTDEDVLIE--ILCTRSPAQLRAIKQAYKKKY 43 (66)
T ss_dssp HHHHHHHHSSSSSTHHHHHH--HHHHSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCChhHhhh--HHhhhcccccceeehhhhhhh
Confidence 34778889889986666665 889999999999888885543
No 56
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=35.82 E-value=22 Score=27.02 Aligned_cols=19 Identities=32% Similarity=0.957 Sum_probs=14.8
Q ss_pred CcCCCCC-CCCCCCCCCCCC
Q 016477 3 RRCSHCS-NNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~-~~ghnsrtc~~~ 21 (389)
|+|.+|| .||+-+--|.+.
T Consensus 12 rkCp~CGt~NG~R~~~CKN~ 31 (44)
T PF14952_consen 12 RKCPKCGTYNGTRGLSCKNK 31 (44)
T ss_pred ccCCcCcCccCcccccccCC
Confidence 8999999 578777667665
No 57
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=35.18 E-value=1.1e+02 Score=31.79 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHc-CC--CCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKL-GK--GDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLeky-Gk--GdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
...||..|.+.+|.+|+.- |. =|...|+ ..|..|+..||+..-|+.=.|
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~-~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELA-KELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHH-hhccCcCHHHHHHHHHHHHHH
Confidence 4689999999999999964 32 2566788 599999999999977765333
No 58
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.50 E-value=21 Score=34.23 Aligned_cols=17 Identities=47% Similarity=1.109 Sum_probs=16.2
Q ss_pred CcCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCP 19 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~ 19 (389)
++|--||++||-.|-||
T Consensus 61 ~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP 77 (190)
T ss_pred cccchhcccCcccccCC
Confidence 68999999999999999
No 59
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=31.95 E-value=65 Score=30.99 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC--CCHHHHH----hhhcCCCCHHHHHHHHHH
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGK--GDWRGIA----RNYVMSRTPTQVASHAQK 187 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGk--GdWk~IA----r~fV~TRTp~QVrSHAQK 187 (389)
..+....||.+|.+.+......... ..|++|= ..|-.+||+.+...|.|-
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~l 124 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRL 124 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHH
Confidence 3445789999999998887654422 3577762 258899999999998873
No 60
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=29.23 E-value=27 Score=24.89 Aligned_cols=19 Identities=37% Similarity=0.914 Sum_probs=17.2
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
..|--|+.-||--+.||..
T Consensus 9 Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 9 YVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CEeecCCCCCccHhHCCCC
Confidence 4699999999999999984
No 61
>PHA00442 host recBCD nuclease inhibitor
Probab=28.37 E-value=60 Score=26.01 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHh
Q 016477 146 TEEEHRLFLIGLQKLGKGDWRGIAR 170 (389)
Q Consensus 146 TeEEH~lFLeGLekyGkGdWk~IAr 170 (389)
+-|-...||.+|+-.|--+|.++..
T Consensus 24 sLek~~~~L~~Lea~GVDNW~Gy~e 48 (59)
T PHA00442 24 SLEKDNEFLKALRACGVDNWDGYMD 48 (59)
T ss_pred HHHHhhHHHHHHHHcCCcchhhHHH
Confidence 3455678999999999999999973
No 62
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.23 E-value=42 Score=32.05 Aligned_cols=18 Identities=39% Similarity=1.047 Sum_probs=13.3
Q ss_pred cCCCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~~~ 21 (389)
.|-.||+.||-++-|+..
T Consensus 145 ~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 145 KCYSCGEQGHISDDCPEN 162 (261)
T ss_pred ccCCCCcCCcchhhCCCC
Confidence 477788888888888744
No 63
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=27.67 E-value=40 Score=29.44 Aligned_cols=19 Identities=53% Similarity=1.214 Sum_probs=13.5
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
+.|..|+..||.++.|+..
T Consensus 78 ~~C~~Cg~~GH~~~~C~~~ 96 (148)
T PTZ00368 78 RSCYNCGQTGHISRECPNR 96 (148)
T ss_pred cccCcCCCCCcccccCCCc
Confidence 3577777777777777765
No 64
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.01 E-value=38 Score=32.10 Aligned_cols=28 Identities=29% Similarity=0.588 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIA 169 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IA 169 (389)
...|-.+-+-.+|.|+-++|.|.|..|.
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~ 30 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQ 30 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHh
Confidence 3578888888999999999999999996
No 65
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=26.43 E-value=45 Score=29.14 Aligned_cols=20 Identities=45% Similarity=1.027 Sum_probs=13.5
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
+.|..|+..||-++.||...
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~~ 72 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEAP 72 (148)
T ss_pred cccCCCCCcCcCcccCCCcc
Confidence 35777777777777776653
No 66
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.01 E-value=34 Score=22.95 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=7.4
Q ss_pred CCcCCCCCC
Q 016477 2 TRRCSHCSN 10 (389)
Q Consensus 2 ~r~cs~c~~ 10 (389)
.++|.|||+
T Consensus 14 ~~~Cp~CG~ 22 (26)
T PF10571_consen 14 AKFCPHCGY 22 (26)
T ss_pred cCcCCCCCC
Confidence 478999986
No 67
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=25.70 E-value=1e+02 Score=33.57 Aligned_cols=45 Identities=2% Similarity=-0.120 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
...||.+|..+...+|++||+ ++.-|. ..|+-.+..|+..-.-.|
T Consensus 369 n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~ 413 (534)
T KOG1194|consen 369 NRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEE 413 (534)
T ss_pred ccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHH
Confidence 468999999999999999999 899999 799999999998755555
No 68
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=24.78 E-value=44 Score=24.87 Aligned_cols=19 Identities=37% Similarity=0.989 Sum_probs=17.2
Q ss_pred CCcCCCCCCCCCCCCCCCC
Q 016477 2 TRRCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 2 ~r~cs~c~~~ghnsrtc~~ 20 (389)
..+|-.|+..||=..-|++
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3689999999999999995
No 69
>PF02509 Rota_NS35: Rotavirus non-structural protein 35; InterPro: IPR003668 Rotavirus non-structural protein 2 (NSP2) is a basic protein which possesses RNA-binding activity and is essential for genome replication []. It may also be important for viral RNA packaging.; GO: 0003723 RNA binding, 0019079 viral genome replication; PDB: 2GU0_B 2R8F_A 2R7P_A 2R7C_A 1L9V_A 2R7J_A.
Probab=23.45 E-value=28 Score=35.33 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHH---------cCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhccccCCC
Q 016477 142 GVPWTEEEHRLFLIGLQK---------LGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRS 202 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLek---------yGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~krKrRs 202 (389)
.++-.+.+.+.|..-|+- +|+|-||.+- -.||++||...|...++.+|+++..
T Consensus 194 ~~pi~d~~~kelvAelrwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~ 255 (316)
T PF02509_consen 194 DTPISDSNVKELVAELRWQYNKFAVITHGKGHYRVVK--------YSSVANHADRVYATFKSNKKTGSQF 255 (316)
T ss_dssp SS---HHHHHHHHHHHHHHTTTEEEEESSSSCEEEEE--------GGGHHHHHHHHHHHHCTTCCTT---
T ss_pred CCCCchHHHHHHHHHHHHhhcceEEEeccCceEEEEe--------hHHhhhhHHHHHHHHhcccccCCcc
Confidence 345666676777776662 5889999875 3699999999999998877655433
Done!