Query 016477
Match_columns 389
No_of_seqs 249 out of 510
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.6 8.6E-15 2.9E-19 112.9 8.4 63 142-206 9-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.5 3.6E-14 1.2E-18 112.8 5.0 49 138-188 14-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.4 1.9E-13 6.4E-18 105.6 5.7 51 142-193 8-63 (75)
4 1x41_A Transcriptional adaptor 99.4 9.2E-13 3.2E-17 98.6 6.3 48 142-190 8-55 (60)
5 2elk_A SPCC24B10.08C protein; 99.4 7.8E-13 2.7E-17 98.7 5.8 48 142-190 9-57 (58)
6 2eqr_A N-COR1, N-COR, nuclear 99.3 2.3E-12 7.9E-17 97.2 7.1 46 142-192 12-57 (61)
7 2iw5_B Protein corest, REST co 99.3 4.1E-12 1.4E-16 119.3 6.3 55 133-189 124-178 (235)
8 2xag_B REST corepressor 1; ami 99.2 7.6E-12 2.6E-16 127.3 6.3 50 140-191 378-427 (482)
9 2yqk_A Arginine-glutamic acid 99.2 3.1E-11 1.1E-15 91.9 7.1 47 142-192 9-55 (63)
10 1guu_A C-MYB, MYB proto-oncoge 99.2 4.3E-11 1.5E-15 86.4 6.7 47 142-189 3-49 (52)
11 1irz_A ARR10-B; helix-turn-hel 99.1 7.9E-11 2.7E-15 91.6 7.4 53 140-194 5-62 (64)
12 1gvd_A MYB proto-oncogene prot 99.1 8.1E-11 2.8E-15 85.1 5.8 47 142-189 3-49 (52)
13 2crg_A Metastasis associated p 99.1 1.1E-10 3.9E-15 90.7 6.8 43 142-185 8-50 (70)
14 2d9a_A B-MYB, MYB-related prot 99.1 1.5E-10 5E-15 86.0 6.2 47 142-189 8-54 (60)
15 1ity_A TRF1; helix-turn-helix, 99.0 1.1E-09 3.7E-14 83.6 7.5 51 140-191 8-60 (69)
16 1w0t_A Telomeric repeat bindin 99.0 1.2E-09 4.1E-14 79.6 6.9 47 142-189 2-50 (53)
17 2dim_A Cell division cycle 5-l 99.0 1E-09 3.5E-14 83.8 6.3 47 142-189 9-55 (70)
18 3sjm_A Telomeric repeat-bindin 98.9 2.2E-09 7.6E-14 82.0 7.0 46 142-188 11-58 (64)
19 2ltp_A Nuclear receptor corepr 98.4 1.4E-10 4.7E-15 93.4 0.0 49 142-192 16-64 (89)
20 2din_A Cell division cycle 5-l 98.9 4.1E-09 1.4E-13 79.7 7.7 50 142-194 9-58 (66)
21 2cqr_A RSGI RUH-043, DNAJ homo 98.9 1.6E-09 5.3E-14 85.4 5.4 46 142-188 18-66 (73)
22 1wgx_A KIAA1903 protein; MYB D 98.9 3.1E-09 1.1E-13 84.3 6.6 46 142-188 8-56 (73)
23 2cjj_A Radialis; plant develop 98.8 7.5E-09 2.6E-13 84.9 6.9 51 142-193 8-61 (93)
24 1gv2_A C-MYB, MYB proto-oncoge 98.8 6.7E-09 2.3E-13 83.8 5.8 47 142-189 4-50 (105)
25 2roh_A RTBP1, telomere binding 98.8 1.6E-08 5.4E-13 86.9 8.4 56 137-192 26-84 (122)
26 2cqq_A RSGI RUH-037, DNAJ homo 98.8 1.2E-08 4.1E-13 80.1 7.0 45 142-188 8-55 (72)
27 2ckx_A NGTRF1, telomere bindin 98.8 2.3E-08 7.9E-13 80.4 8.1 51 143-193 1-54 (83)
28 2k9n_A MYB24; R2R3 domain, DNA 98.7 2.3E-08 7.8E-13 81.6 7.7 50 142-193 53-102 (107)
29 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.3E-08 4.3E-13 83.1 5.9 46 143-189 2-47 (107)
30 4a69_C Nuclear receptor corepr 98.7 1.4E-08 4.6E-13 83.1 5.9 42 142-185 43-84 (94)
31 1h8a_C AMV V-MYB, MYB transfor 98.7 2.8E-08 9.4E-13 83.1 6.3 47 142-189 27-73 (128)
32 2aje_A Telomere repeat-binding 98.7 4.5E-08 1.5E-12 82.1 7.4 54 138-191 9-65 (105)
33 3zqc_A MYB3; transcription-DNA 98.7 2.1E-08 7.3E-13 84.4 5.4 47 142-189 2-48 (131)
34 3osg_A MYB21; transcription-DN 98.6 3.7E-08 1.3E-12 82.6 6.5 47 141-189 10-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.5E-08 1.2E-12 79.6 6.0 45 142-188 56-100 (105)
36 3osg_A MYB21; transcription-DN 98.6 6.6E-08 2.3E-12 81.1 7.4 50 142-193 62-111 (126)
37 4eef_G F-HB80.4, designed hema 98.6 9.9E-09 3.4E-13 82.1 0.9 45 142-187 20-67 (74)
38 2juh_A Telomere binding protei 98.5 1.7E-07 5.7E-12 80.5 7.2 56 138-193 13-71 (121)
39 1h8a_C AMV V-MYB, MYB transfor 98.5 1E-07 3.5E-12 79.6 4.8 46 141-188 78-123 (128)
40 3zqc_A MYB3; transcription-DNA 98.5 1.6E-07 5.4E-12 79.1 5.6 48 142-191 54-101 (131)
41 2llk_A Cyclin-D-binding MYB-li 98.5 2.4E-07 8.3E-12 73.0 6.0 42 142-186 23-64 (73)
42 1h89_C C-MYB, MYB proto-oncoge 98.4 2.8E-07 9.5E-12 79.4 6.1 47 142-189 58-104 (159)
43 1h89_C C-MYB, MYB proto-oncoge 98.3 4.1E-07 1.4E-11 78.3 4.3 46 141-188 109-154 (159)
44 1x58_A Hypothetical protein 49 98.0 9.1E-06 3.1E-10 63.0 6.3 43 142-185 8-52 (62)
45 1ign_A Protein (RAP1); RAP1,ye 97.5 4.8E-05 1.6E-09 72.2 4.1 48 142-190 8-60 (246)
46 2xag_B REST corepressor 1; ami 97.5 1.8E-05 6.1E-10 80.9 0.0 42 142-185 189-230 (482)
47 1ofc_X ISWI protein; nuclear p 97.2 0.00023 7.7E-09 69.1 4.9 49 141-189 211-273 (304)
48 1ofc_X ISWI protein; nuclear p 97.1 0.00057 1.9E-08 66.3 6.6 48 144-192 112-159 (304)
49 4b4c_A Chromodomain-helicase-D 96.2 0.0074 2.5E-07 53.4 6.2 51 142-192 7-60 (211)
50 1fex_A TRF2-interacting telome 95.9 0.0083 2.8E-07 45.2 4.3 48 142-189 2-57 (59)
51 2y9y_A Imitation switch protei 95.5 0.018 6.1E-07 57.5 6.2 48 144-192 125-173 (374)
52 4b4c_A Chromodomain-helicase-D 95.5 0.015 5E-07 51.6 5.0 52 141-193 133-197 (211)
53 3hm5_A DNA methyltransferase 1 95.4 0.039 1.3E-06 45.6 7.0 45 143-188 31-79 (93)
54 1ug2_A 2610100B20RIK gene prod 94.9 0.11 3.7E-06 43.4 8.2 50 138-188 29-80 (95)
55 1dsq_A Nucleic acid binding pr 94.0 0.028 9.6E-07 35.9 2.2 22 2-23 2-23 (26)
56 2ebi_A DNA binding protein GT- 92.5 0.14 4.8E-06 40.0 4.5 44 142-186 4-60 (86)
57 2hzd_A Transcriptional enhance 92.3 0.16 5.6E-06 41.2 4.8 46 142-187 6-70 (82)
58 2xb0_X Chromo domain-containin 92.1 0.14 4.8E-06 48.9 4.9 28 142-169 168-195 (270)
59 4iej_A DNA methyltransferase 1 92.0 0.39 1.3E-05 39.8 6.7 52 142-194 30-85 (93)
60 2lr8_A CAsp8-associated protei 86.8 0.12 4.2E-06 41.0 0.0 48 139-188 11-60 (70)
61 2y9y_A Imitation switch protei 86.6 0.62 2.1E-05 46.6 4.8 47 142-188 228-288 (374)
62 1a6b_B Momulv, zinc finger pro 84.9 0.47 1.6E-05 33.6 2.2 20 3-22 11-30 (40)
63 1nc8_A Nucleocapsid protein; H 84.4 0.37 1.3E-05 31.3 1.4 19 3-21 7-25 (29)
64 2ihx_A Nucleocapsid (NC) prote 83.7 0.48 1.7E-05 35.2 1.9 19 4-22 32-50 (61)
65 1u6p_A GAG polyprotein; MLV, A 79.1 0.75 2.6E-05 34.6 1.6 20 3-22 24-43 (56)
66 2a51_A Nucleocapsid protein; s 77.7 1.3 4.4E-05 30.1 2.3 16 4-19 2-17 (39)
67 2bl6_A Nucleocapsid protein P1 77.4 0.96 3.3E-05 30.4 1.6 17 4-20 2-18 (37)
68 2bl6_A Nucleocapsid protein P1 75.5 1.5 5.1E-05 29.5 2.1 17 4-20 21-37 (37)
69 3nyb_B Protein AIR2; polya RNA 75.1 1.5 5E-05 35.1 2.3 20 3-22 47-66 (83)
70 1a1t_A Nucleocapsid protein; s 75.1 1.2 4E-05 32.1 1.6 18 3-20 13-30 (55)
71 2ihx_A Nucleocapsid (NC) prote 73.6 1.4 4.9E-05 32.6 1.8 22 1-22 3-24 (61)
72 2ec7_A GAG polyprotein (PR55GA 73.6 1.5 5.1E-05 31.2 1.8 18 3-20 7-24 (49)
73 2ec7_A GAG polyprotein (PR55GA 72.6 1.8 6.3E-05 30.8 2.1 20 3-22 28-47 (49)
74 2a51_A Nucleocapsid protein; s 71.9 1.8 6.1E-05 29.4 1.8 16 5-20 24-39 (39)
75 2xb0_X Chromo domain-containin 71.3 9.3 0.00032 36.4 7.2 47 142-188 3-52 (270)
76 1cl4_A Protein (GAG polyprotei 67.7 3.2 0.00011 30.3 2.5 20 3-22 31-50 (60)
77 1a1t_A Nucleocapsid protein; s 66.1 2.4 8.1E-05 30.5 1.5 20 3-22 34-53 (55)
78 1cl4_A Protein (GAG polyprotei 63.6 1.5 5E-05 32.1 0.0 22 2-23 1-22 (60)
79 2cqf_A RNA-binding protein LIN 59.9 4 0.00014 30.5 1.8 16 4-19 9-24 (63)
80 2cqf_A RNA-binding protein LIN 57.8 5.6 0.00019 29.7 2.3 19 3-21 30-48 (63)
81 2li8_A Protein LIN-28 homolog 56.5 4.5 0.00015 31.5 1.6 18 3-20 25-42 (74)
82 1ign_A Protein (RAP1); RAP1,ye 53.8 22 0.00076 33.9 6.1 28 164-192 173-200 (246)
83 2li8_A Protein LIN-28 homolog 52.7 7.1 0.00024 30.4 2.2 20 3-22 47-66 (74)
84 3ts2_A Protein LIN-28 homolog 50.6 6.3 0.00021 34.0 1.8 19 3-21 98-116 (148)
85 2ysa_A Retinoblastoma-binding 50.3 6.3 0.00022 29.5 1.5 20 3-22 8-27 (55)
86 2lli_A Protein AIR2; RNA surve 47.7 9.2 0.00031 31.3 2.2 20 3-22 65-84 (124)
87 3nyb_B Protein AIR2; polya RNA 43.3 7.4 0.00025 31.0 1.0 19 3-21 6-24 (83)
88 2lli_A Protein AIR2; RNA surve 41.0 13 0.00045 30.3 2.2 19 3-21 5-23 (124)
89 4g0a_A Non-structural protein 25.7 18 0.0006 35.4 0.6 53 142-202 194-255 (317)
90 2gu0_A Nonstructural protein 2 23.6 16 0.00055 35.6 -0.2 51 143-201 192-251 (312)
91 3o2i_A Uncharacterized protein 23.6 50 0.0017 28.2 2.9 26 142-167 48-74 (125)
92 2lm1_A Lysine-specific demethy 21.6 1.8E+02 0.0062 23.1 5.8 33 163-195 66-101 (107)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=8.6e-15 Score=112.94 Aligned_cols=63 Identities=37% Similarity=0.546 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhccccCCCCccc
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSSLFD 206 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~krKrRsSL~D 206 (389)
..+||+||+++|++++++||. +|..|| .+|++||..||+.|+++||.+..+.+..+++.+||+
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 569999999999999999999 999999 699999999999999999999887777788888875
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=112.78 Aligned_cols=49 Identities=31% Similarity=0.475 Sum_probs=44.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
......+||+||+++||+||++|| ++|..|| .+|+|||..||+.|+++|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence 344467999999999999999999 6999999 699999999999999876
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=105.62 Aligned_cols=51 Identities=39% Similarity=0.535 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-----CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK-----GDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk-----GdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
...||+||+++|+++|++||. ++|..|| .+|++||..||+.|+|+||.++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999996 6899999 79999999999999999998754
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=9.2e-13 Score=98.57 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
..+||+||+++|++++++||.++|..|| .+|++||..||+.|.++|+.
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999988999999 79999999999999999975
No 5
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.35 E-value=7.8e-13 Score=98.71 Aligned_cols=48 Identities=33% Similarity=0.624 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKYFI 190 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~-TRTp~QVrSHAQKYF~ 190 (389)
...||+||+++|++++++||.++|..|| .+|+ +||..||+.|.++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 4589999999999999999988999999 6999 9999999999999985
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=97.18 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
..+||+||+++|++||.+||+ +|..|| .+|++||..||+.| ||...
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~---Yy~~K 57 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLY---YYLTK 57 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHH---HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHH---HHHhc
Confidence 789999999999999999998 999999 79999999999754 66543
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.26 E-value=4.1e-12 Score=119.32 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 133 HMDVNKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 133 ~~p~~~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
+.+....+...+||+||+++|++||.+||+ ||..|| .+|+|||..||+.|+++|.
T Consensus 124 R~pe~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 334445556789999999999999999998 999999 6999999999999998874
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.22 E-value=7.6e-12 Score=127.26 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 140 QIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 140 ~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
+...+||+|||.+|++||++||+ ||+.|| .+|+|||..||++|+++|+.+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHH
Confidence 44679999999999999999999 999999 699999999999999988544
No 9
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.1e-11 Score=91.91 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
...||+||+++|++||.+||+ ||..|++++|+|||..||. +-||...
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v---~fYY~wK 55 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELI---TFYYYWK 55 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHH---HHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHH---HHHhccc
Confidence 569999999999999999999 9999996589999999996 5566543
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.18 E-value=4.3e-11 Score=86.40 Aligned_cols=47 Identities=34% Similarity=0.514 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..+||+||.+++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999999999 6999999999999998885
No 11
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.15 E-value=7.9e-11 Score=91.59 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC---HHHHHhhhcC--CCCHHHHHHHHHHHHHHHhh
Q 016477 140 QIGVPWTEEEHRLFLIGLQKLGKGD---WRGIARNYVM--SRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 140 ~~~~~WTeEEH~lFLeGLekyGkGd---Wk~IAr~fV~--TRTp~QVrSHAQKYF~rl~~ 194 (389)
+.+..||+|+|++|++|++.+| +| |+.|- .+++ ..|..||+||.|||+.++.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLG-VERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 3478999999999999999999 46 89998 4644 67999999999999998864
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.11 E-value=8.1e-11 Score=85.11 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..+||+||.+++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999988999999 6999999999999998874
No 13
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.11 E-value=1.1e-10 Score=90.69 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
...||+||+++|++||.+||+ ||..|++++|+|||+.||..++
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 679999999999999999999 9999995589999999997654
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=1.5e-10 Score=85.96 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..+||+||.+++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 8 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHc
Confidence 5699999999999999999977999999 6999999999999998774
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.98 E-value=1.1e-09 Score=83.64 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHHH
Q 016477 140 QIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM--SRTPTQVASHAQKYFIR 191 (389)
Q Consensus 140 ~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~--TRTp~QVrSHAQKYF~r 191 (389)
....+||+||.+++++++++||.++|..|| .+++ .||..||+.+.++|+..
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 336799999999999999999988999999 6889 99999999998887543
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.97 E-value=1.2e-09 Score=79.55 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC--CCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM--SRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~--TRTp~QVrSHAQKYF 189 (389)
..+||+||.+++++++++||.++|..|| .+++ +||..||+.+.++|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988999999 6889 999999999887764
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1e-09 Score=83.81 Aligned_cols=47 Identities=21% Similarity=0.493 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..+||+||.+++++++++||.++|..|| .+|++||..||+.|.++|+
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHc
Confidence 5699999999999999999988999999 6999999999999988774
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.92 E-value=2.2e-09 Score=82.03 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhc--CCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYV--MSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV--~TRTp~QVrSHAQKY 188 (389)
..+||+||.+++++++++||.++|..||+ ++ .+||..||+.+.+.|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999999995 54 499999999988765
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.43 E-value=1.4e-10 Score=93.36 Aligned_cols=49 Identities=37% Similarity=0.449 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
.++||+||+++|++++++||. +|..|| .+|++||..||+.|++.|..++
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 569999999999999999999 899999 6999999999999999886553
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.1e-09 Score=79.65 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~ 194 (389)
..+||+||.+++++++++||. +|..||+ +++ ||..||+.|.++|+....+
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhc
Confidence 568999999999999999998 9999995 665 9999999999999876653
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=1.6e-09 Score=85.43 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK---GDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk---GdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
...||.||..+|+++|++||+ .+|..|| .+|++||..||+.|.+++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 568999999999999999995 3799999 799999999999998865
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=3.1e-09 Score=84.34 Aligned_cols=46 Identities=26% Similarity=0.422 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK---GDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk---GdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
...||+||.++|+.||..|++ ++|.+|| .+|++||..||+-|++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 458999999999999999998 5799999 799999999999887654
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.80 E-value=7.5e-09 Score=84.92 Aligned_cols=51 Identities=29% Similarity=0.527 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK---GDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk---GdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
...||.||.++|+++|.+||+ .+|..|| .+|+.||..||+.|+++++.+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999985 3699999 79999999999999999876654
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.78 E-value=6.7e-09 Score=83.82 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.++||+||.+++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999998999999 7999999999999888763
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.78 E-value=1.6e-08 Score=86.91 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=48.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 016477 137 NKRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 137 ~~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~f---V~TRTp~QVrSHAQKYF~rl 192 (389)
..++...+||+||.+.+++|+++||.|+|..|++.+ +..||..||+.+..+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 445557899999999999999999999999999753 38999999999988886544
No 26
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=1.2e-08 Score=80.08 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkG---dWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
...||+||+++|..+|.+|+.| +|.+|| .++ .||..||+.|++++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 5589999999999999999964 699999 578 69999999998876
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.75 E-value=2.3e-08 Score=80.44 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhh---hcCCCCHHHHHHHHHHHHHHHh
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARN---YVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~---fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
.+||+||.+.+++|+++||.|+|..|++. ++..||..||+.+..+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999964 3789999999999998876544
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.74 E-value=2.3e-08 Score=81.58 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
.++||+||+.++++++++||. +|..|| .+|++||..||+.|.+.+..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence 579999999999999999998 999999 69999999999999987766544
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.73 E-value=1.3e-08 Score=83.11 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
+.||+||..++++++++||.++|..|| .+|++||+.||+.+..+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 489999999999999999988999999 7999999999999887764
No 30
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.72 E-value=1.4e-08 Score=83.07 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
...||+|||++|+++|.+||| +|..|+ .+|++||..||.-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 679999999999999999999 999998 799999999997654
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.66 E-value=2.8e-08 Score=83.09 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.++||+||.+++++++++||.++|..|| .++++||..||+.|.++|+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 5699999999999999999988999999 7999999999999888764
No 32
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.66 E-value=4.5e-08 Score=82.10 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHH
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~f---V~TRTp~QVrSHAQKYF~r 191 (389)
+++...+||+||.+.+++|+++||.|+|..|++.+ +..||..||+.+..+++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34447899999999999999999999999999644 2899999999998887653
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.65 E-value=2.1e-08 Score=84.39 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.++||+||.+++++++++||.++|..|| .+|++||..||+.+.++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhcc
Confidence 3589999999999999999988999999 7999999999999988875
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.64 E-value=3.7e-08 Score=82.61 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
..+.||+||.+++++++++||. +|..|| .++++||..||+.+.++|+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhc
Confidence 3679999999999999999998 999999 7999999999999988875
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.64 E-value=3.5e-08 Score=79.62 Aligned_cols=45 Identities=31% Similarity=0.587 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
.++||+||..++++++++||. +|..|| .+|++||..||+.|.+.+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 569999999999999999997 999999 699999999999988755
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.62 E-value=6.6e-08 Score=81.06 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
.++||+||.+++++++++||. +|..|| .+|++||..||+.|...+..++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999997 899999 69999999999999877665543
No 37
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.57 E-value=9.9e-09 Score=82.06 Aligned_cols=45 Identities=38% Similarity=0.673 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQK 187 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkG---dWk~IAr~fV~TRTp~QVrSHAQK 187 (389)
+..||.||.++|..||.+|+++ +|.+|| .+|+.||+.||+.|+|-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHHH
Confidence 5689999999999999999985 799999 79999999999999873
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.52 E-value=1.7e-07 Score=80.49 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHHh
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~f---V~TRTp~QVrSHAQKYF~rl~ 193 (389)
.++...+||+||.+.+++|+++||.|.|..|++.+ +..||..||+.+...+.....
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 34447799999999999999999999999999654 489999999999988876543
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.48 E-value=1e-07 Score=79.61 Aligned_cols=46 Identities=33% Similarity=0.562 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
..++||+||.+++++++++||. +|..|| .+|++||..||+.|...+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998 999999 699999999999987643
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.46 E-value=1.6e-07 Score=79.07 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 191 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~r 191 (389)
.++||+||..++++++++||. .|..|| .++++||..||+.|.+.|+.+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999997 899999 699999999999988776543
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.45 E-value=2.4e-07 Score=73.01 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQ 186 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQ 186 (389)
.++||+||.+++++++++||. +|..|| .++ .||..||+.+..
T Consensus 23 k~~wT~EED~~L~~l~~~~G~-kW~~IA-~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGN-DWATIG-AAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSS-CHHHHH-HHH-TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CHHHHH-HHh-CCCHHHHHHHHH
Confidence 569999999999999999998 699999 577 999999998764
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.42 E-value=2.8e-07 Score=79.42 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
.++||+||..+++.++++||.++|..|| .++++||..||+.+.++|+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 5699999999999999999987999999 6999999999999887764
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.30 E-value=4.1e-07 Score=78.34 Aligned_cols=46 Identities=30% Similarity=0.559 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
...+||+||+.++++++++||. +|..|| .+|++||..||+.|...+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998 999999 699999999999987643
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.02 E-value=9.1e-06 Score=63.05 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHh--hhcCCCCHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIAR--NYVMSRTPTQVASHA 185 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr--~fV~TRTp~QVrSHA 185 (389)
+.+||+||.+.+++|+++||+ .|..|+. .|+.-||.+.++...
T Consensus 8 r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~ 52 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKY 52 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHH
Confidence 458999999999999999999 9999995 378899999998643
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.54 E-value=4.8e-05 Score=72.21 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGD-----WRGIARNYVMSRTPTQVASHAQKYFI 190 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGd-----Wk~IAr~fV~TRTp~QVrSHAQKYF~ 190 (389)
...||+||.+..++..++||..+ |..|| .+++.||..||+.|...|..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 45899999999999999998853 99999 69999999999999988853
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.45 E-value=1.8e-05 Score=80.91 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHA 185 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHA 185 (389)
...||++|+.+|.+||.+||+ +|..|+ .+|++||..||..|+
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 347999999999999999999 999999 799999999998654
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.24 E-value=0.00023 Score=69.13 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCHHHHH---h--------hhcCCCCHHHHHHHHHHHH
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGK---GDWRGIA---R--------NYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGk---GdWk~IA---r--------~fV~TRTp~QVrSHAQKYF 189 (389)
.+..||+||++.||-+|.+||. |+|..|. + .|+.+||+.+|..|++--.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 3568999999999999999999 9999995 2 4999999999999997543
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.15 E-value=0.00057 Score=66.35 Aligned_cols=48 Identities=27% Similarity=0.485 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 144 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 144 ~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
.||..+-..|+.|+.+||+.+|..|| ..|+++|+.+|+-|++-|+.+.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence 69999999999999999999999999 7999999999999998887775
No 49
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.18 E-value=0.0074 Score=53.45 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC--CCCHHHHHhh-hcCCCCHHHHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLG--KGDWRGIARN-YVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyG--kGdWk~IAr~-fV~TRTp~QVrSHAQKYF~rl 192 (389)
-..||+.|.+.|+.|+.+|| .++|..|++. -+..||..+|..+++-+..+.
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999 6899999853 256899999999888776654
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.89 E-value=0.0083 Score=45.21 Aligned_cols=48 Identities=10% Similarity=0.272 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKL--------GKGDWRGIARNYVMSRTPTQVASHAQKYF 189 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLeky--------GkGdWk~IAr~fV~TRTp~QVrSHAQKYF 189 (389)
+.+||+||....++-+..| |..-|+.|++..++.+|-.+++.|.-|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 55579999964899999999999988864
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.49 E-value=0.018 Score=57.51 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHHHH
Q 016477 144 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 144 ~WTeEEH~lFLeGLekyGkGdWk~IAr~fV~-TRTp~QVrSHAQKYF~rl 192 (389)
.||..+-..|+.|+++||+.|...|| ..|. ++|+.+|+.+++-|+.|.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhh
Confidence 69999999999999999999999999 6887 999999999998777663
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.45 E-value=0.015 Score=51.55 Aligned_cols=52 Identities=25% Similarity=0.524 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHh-------------hhcCCCCHHHHHHHHHHHHHHHh
Q 016477 141 IGVPWTEEEHRLFLIGLQKLGKGDWRGIAR-------------NYVMSRTPTQVASHAQKYFIRQS 193 (389)
Q Consensus 141 ~~~~WTeEEH~lFLeGLekyGkGdWk~IAr-------------~fV~TRTp~QVrSHAQKYF~rl~ 193 (389)
....||++|.+.+|.|+.+||-|.|..|-. .+..+++..++...|. |.+++-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 356799999999999999999999999953 1245677778888874 555543
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.42 E-value=0.039 Score=45.57 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhc----CCCCHHHHHHHHHHH
Q 016477 143 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYV----MSRTPTQVASHAQKY 188 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV----~TRTp~QVrSHAQKY 188 (389)
..||.||-..+++-.++||. .|-.|+..|- +.||..+++...-..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 69999999999999999998 9999996553 579999999875433
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.92 E-value=0.11 Score=43.42 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=43.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC--CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 138 KRQIGVPWTEEEHRLFLIGLQKLGK--GDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 138 ~~~~~~~WTeEEH~lFLeGLekyGk--GdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
++..-.-||.||.+-.|...++-|. .-|..|| ..++.|++.||..+.|..
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHH
Confidence 3444679999999999999999876 4799999 699999999999988865
No 55
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.99 E-value=0.028 Score=35.95 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=18.4
Q ss_pred CCcCCCCCCCCCCCCCCCCCCC
Q 016477 2 TRRCSHCSNNGHNSRTCPTRGG 23 (389)
Q Consensus 2 ~r~cs~c~~~ghnsrtc~~~~~ 23 (389)
.++|-.||..||-+|.|+...+
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC--
T ss_pred CCeeEeCCCCCcccccCCCccc
Confidence 4689999999999999998753
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.48 E-value=0.14 Score=39.97 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHH----cCC-----CCHHHHHhhhcC----CCCHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQK----LGK-----GDWRGIARNYVM----SRTPTQVASHAQ 186 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLek----yGk-----GdWk~IAr~fV~----TRTp~QVrSHAQ 186 (389)
...||++|-.+||..... |.. ..|..||. .+. .||+.||+.--.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~ 60 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWR 60 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHH
Confidence 568999999999999874 211 27999995 433 799999988544
No 57
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=92.31 E-value=0.16 Score=41.22 Aligned_cols=46 Identities=30% Similarity=0.300 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CCH--------------HHHHh----hhcCCCCHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK-GDW--------------RGIAR----NYVMSRTPTQVASHAQK 187 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk-GdW--------------k~IAr----~fV~TRTp~QVrSHAQK 187 (389)
...|.++=...|++||+.|.+ |.| ..|+. ..-.+||..||.||-|-
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 668999999999999999864 222 22331 23458999999999985
No 58
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.14 E-value=0.14 Score=48.87 Aligned_cols=28 Identities=43% Similarity=0.825 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIA 169 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IA 169 (389)
...|+.+|...+|.|+-+||.|.|..|.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 3469999999999999999999999996
No 59
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.99 E-value=0.39 Score=39.79 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhc----CCCCHHHHHHHHHHHHHHHhh
Q 016477 142 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYV----MSRTPTQVASHAQKYFIRQSN 194 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGkGdWk~IAr~fV----~TRTp~QVrSHAQKYF~rl~~ 194 (389)
...||.||-..+++..++|+- .|--|+..|- +.||..+++.+.-..-.++..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 358999999999999999998 9999996665 479999999977555555543
No 60
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=86.82 E-value=0.12 Score=41.00 Aligned_cols=48 Identities=27% Similarity=0.471 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC--CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 016477 139 RQIGVPWTEEEHRLFLIGLQKLGK--GDWRGIARNYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 139 ~~~~~~WTeEEH~lFLeGLekyGk--GdWk~IAr~fV~TRTp~QVrSHAQKY 188 (389)
+..-..||.||.+-.|...++-|. .-|..||+ .+ .||+.||....|..
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 344668999999999999999886 36999994 56 79999999887764
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=86.64 E-value=0.62 Score=46.61 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCHHHHHh-----------hhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK---GDWRGIAR-----------NYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk---GdWk~IAr-----------~fV~TRTp~QVrSHAQKY 188 (389)
+..||+||.+-+|-+|-+||- |.|..|-. -|+.+||+.++.-++.--
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999999 99999932 359999999998888543
No 62
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=84.90 E-value=0.47 Score=33.59 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=17.9
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
-+|-.||..||-+|+||...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 47999999999999999864
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=84.38 E-value=0.37 Score=31.28 Aligned_cols=19 Identities=37% Similarity=0.962 Sum_probs=16.9
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
.+|-.||..||-+|.|+.-
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4699999999999999864
No 64
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.69 E-value=0.48 Score=35.18 Aligned_cols=19 Identities=42% Similarity=1.066 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~~~~ 22 (389)
+|-.|+..||-+|.|+...
T Consensus 32 ~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp BCTTTCCBSSCGGGCCCCC
T ss_pred eeCCCCCCCCCcCCCcCCC
Confidence 4555555555555555543
No 65
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=79.12 E-value=0.75 Score=34.63 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=18.0
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
-+|-.||..||-+|.||...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999874
No 66
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=77.71 E-value=1.3 Score=30.12 Aligned_cols=16 Identities=38% Similarity=1.049 Sum_probs=9.8
Q ss_pred cCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCP 19 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~ 19 (389)
+|-.|+..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4556666666666665
No 67
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=77.45 E-value=0.96 Score=30.41 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=11.6
Q ss_pred cCCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~~ 20 (389)
+|-.|+..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 56667777777777764
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=75.49 E-value=1.5 Score=29.47 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=15.2
Q ss_pred cCCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~~ 20 (389)
+|-.|+..||-+|.||+
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57889999999999985
No 69
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=75.14 E-value=1.5 Score=35.06 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=18.1
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|-.||..||=+|.||.+.
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999875
No 70
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=75.11 E-value=1.2 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=11.4
Q ss_pred CcCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~ 20 (389)
.+|-.|+..||-++.|+.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 356666666666666654
No 71
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=73.58 E-value=1.4 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.739 Sum_probs=19.5
Q ss_pred CCCcCCCCCCCCCCCCCCCCCC
Q 016477 1 MTRRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 1 m~r~cs~c~~~ghnsrtc~~~~ 22 (389)
+..+|-.|+..||-+|.|+...
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTT
T ss_pred CCCcccccCCCCeehhhCcCCc
Confidence 4578999999999999999874
No 72
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=73.57 E-value=1.5 Score=31.24 Aligned_cols=18 Identities=39% Similarity=1.032 Sum_probs=10.9
Q ss_pred CcCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~ 20 (389)
.+|-.||..||-++.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 356666666666666654
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=72.62 E-value=1.8 Score=30.76 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=17.5
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|-.||..||-+|.||.+.
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 36899999999999999873
No 74
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=71.87 E-value=1.8 Score=29.37 Aligned_cols=16 Identities=31% Similarity=0.922 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 016477 5 CSHCSNNGHNSRTCPT 20 (389)
Q Consensus 5 cs~c~~~ghnsrtc~~ 20 (389)
|-.||..||-+|.||.
T Consensus 24 C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 24 CWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCSSSCTTTSCC
T ss_pred cccCCCCCCccCcCcC
Confidence 6789999999999984
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=71.25 E-value=9.3 Score=36.43 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--CCHHHHHh-hhcCCCCHHHHHHHHHHH
Q 016477 142 GVPWTEEEHRLFLIGLQKLGK--GDWRGIAR-NYVMSRTPTQVASHAQKY 188 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLekyGk--GdWk~IAr-~fV~TRTp~QVrSHAQKY 188 (389)
.+.||+.|-++|+.++.+||. +.|..|.+ .-+..|+...|..-++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 458999999999999999994 68999954 346678888887755443
No 76
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=67.66 E-value=3.2 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=15.9
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|-.|+..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 56888888888888888764
No 77
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=66.06 E-value=2.4 Score=30.51 Aligned_cols=20 Identities=30% Similarity=0.898 Sum_probs=17.6
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|-.||..||-+|.||...
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSC
T ss_pred CEeCCCCCcCCccCCCcCcC
Confidence 46999999999999999763
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=63.60 E-value=1.5 Score=32.15 Aligned_cols=22 Identities=23% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCCCCCCCCCCC
Q 016477 2 TRRCSHCSNNGHNSRTCPTRGG 23 (389)
Q Consensus 2 ~r~cs~c~~~ghnsrtc~~~~~ 23 (389)
.++|-.|+..||-+|.|+...+
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~~~ 22 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEHAH 22 (60)
T ss_dssp ----------------------
T ss_pred CCccccCCCCCcCHhhCcCCCC
Confidence 3689999999999999998743
No 79
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.87 E-value=4 Score=30.51 Aligned_cols=16 Identities=31% Similarity=0.972 Sum_probs=9.0
Q ss_pred cCCCCCCCCCCCCCCC
Q 016477 4 RCSHCSNNGHNSRTCP 19 (389)
Q Consensus 4 ~cs~c~~~ghnsrtc~ 19 (389)
+|-.|+..||-++.|+
T Consensus 9 ~C~~Cg~~GH~a~~C~ 24 (63)
T 2cqf_A 9 RCYNCGGLDHHAKECK 24 (63)
T ss_dssp CCSSSCCSSSCTTTCC
T ss_pred cccccCCCCcChhhCC
Confidence 4555555555555555
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.77 E-value=5.6 Score=29.67 Aligned_cols=19 Identities=26% Similarity=0.894 Sum_probs=17.1
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
.+|-.|+..||-+|.||..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4688999999999999976
No 81
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=56.48 E-value=4.5 Score=31.48 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=12.2
Q ss_pred CcCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPT 20 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~ 20 (389)
.+|-.||..||-++.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 357777777777777763
No 82
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=53.76 E-value=22 Score=33.89 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.7
Q ss_pred CHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 016477 164 DWRGIARNYVMSRTPTQVASHAQKYFIRQ 192 (389)
Q Consensus 164 dWk~IAr~fV~TRTp~QVrSHAQKYF~rl 192 (389)
-|+.|| .+.++||...+|....|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 6999999999999998876554
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=52.75 E-value=7.1 Score=30.35 Aligned_cols=20 Identities=25% Similarity=0.858 Sum_probs=17.6
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
++|-.|+..||-+|.||...
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTGG
T ss_pred CccCCcCCcCCccCcCcCCc
Confidence 46889999999999999864
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=50.59 E-value=6.3 Score=34.03 Aligned_cols=19 Identities=26% Similarity=0.775 Sum_probs=17.2
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
.+|-.||..||-+|.|+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSC
T ss_pred CcccEeCCccchhhhCCCC
Confidence 3699999999999999975
No 85
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.31 E-value=6.3 Score=29.48 Aligned_cols=20 Identities=40% Similarity=1.002 Sum_probs=17.9
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|--||.-||-.+-||+.+
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGG
T ss_pred CccccCCCcCcccccCCCCC
Confidence 57999999999999999763
No 86
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=47.68 E-value=9.2 Score=31.32 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=16.0
Q ss_pred CcCCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTRG 22 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~~ 22 (389)
..|-.|+..||.+|.||...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 46888888888888888764
No 87
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=43.33 E-value=7.4 Score=30.97 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=16.7
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
..|-.|+..||-++.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999975
No 88
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=41.04 E-value=13 Score=30.34 Aligned_cols=19 Identities=37% Similarity=1.032 Sum_probs=14.4
Q ss_pred CcCCCCCCCCCCCCCCCCC
Q 016477 3 RRCSHCSNNGHNSRTCPTR 21 (389)
Q Consensus 3 r~cs~c~~~ghnsrtc~~~ 21 (389)
+.|-.|+..||.+|.||..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 4677888888888888764
No 89
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=25.71 E-value=18 Score=35.39 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHH---------cCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhccccCCC
Q 016477 142 GVPWTEEEHRLFLIGLQK---------LGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRS 202 (389)
Q Consensus 142 ~~~WTeEEH~lFLeGLek---------yGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~krKrRs 202 (389)
..+-.+.+.+.|..-|+- +|+|-||.+- -.||+.||...|...++.+|+++..
T Consensus 194 ~~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~ 255 (317)
T 4g0a_A 194 DKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVK--------YSSVANHADRVYATFKSNVKTGVNN 255 (317)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEE--------GGGHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhccCCCc
Confidence 346677777777777762 5889999875 3699999999999998877655443
No 90
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=23.57 E-value=16 Score=35.62 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHH---------HcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhccccCC
Q 016477 143 VPWTEEEHRLFLIGLQ---------KLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRR 201 (389)
Q Consensus 143 ~~WTeEEH~lFLeGLe---------kyGkGdWk~IAr~fV~TRTp~QVrSHAQKYF~rl~~~~krKrR 201 (389)
++=.+.-.+.|..-|+ -+|+|-||.+- -.||++||...|...++.+|+++.
T Consensus 192 ~pi~D~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~ 251 (312)
T 2gu0_A 192 TDIPDRNQTAFAAYIRYNFNKFAAISHGKRHWRLVL--------HSQLMSHAERLDRKIKSDKKHGRQ 251 (312)
T ss_dssp SCCCHHHHHHHHHHHHHHSTTEEEECSSSSEEEEEE--------GGGHHHHHHHHHHHHHCCC-----
T ss_pred CcCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhhcCCC
Confidence 3444444444554454 25889999875 369999999999999887765543
No 91
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=23.56 E-value=50 Score=28.17 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=21.6
Q ss_pred CCCCCHHHH-HHHHHHHHHcCCCCHHH
Q 016477 142 GVPWTEEEH-RLFLIGLQKLGKGDWRG 167 (389)
Q Consensus 142 ~~~WTeEEH-~lFLeGLekyGkGdWk~ 167 (389)
...|||||- .++|+|++.--..+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 569999996 56788998888889984
No 92
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.65 E-value=1.8e+02 Score=23.05 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCHHHHHhhhcCCCC---HHHHHHHHHHHHHHHhhh
Q 016477 163 GDWRGIARNYVMSRT---PTQVASHAQKYFIRQSNA 195 (389)
Q Consensus 163 GdWk~IAr~fV~TRT---p~QVrSHAQKYF~rl~~~ 195 (389)
+.|+.|++.+--..+ ..+++.|+.||.......
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 489999965543333 578888999987665544
Done!