BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016478
         (389 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9SVH7|RBR_PHYPA Retinoblastoma-related protein OS=Physcomitrella patens subsp.
           patens GN=RBR PE=3 SV=1
          Length = 1116

 Score = 35.8 bits (81), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 31/221 (14%)

Query: 37  LSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKSYEVLAADAANS 96
           LSK  HS ++ CA  + +S +S  Q   + + +  L P       +P ++   ++   N 
Sbjct: 778 LSKSGHSGEVACAAHTPTSASSPPQNGSSTSEAGFLSPVKD----RPSAFSAFSSPMRNR 833

Query: 97  LAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAV----VRKLQERMET-- 150
           L   LQ          P  PS +   +  +D  I+   Q AL +    +R + ER+    
Sbjct: 834 LRAPLQSA-----FASPQRPSPLGGGETCADTVINVFFQKALVLAAVRIRTVCERIGQPQ 888

Query: 151 ----RACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFS-------SI 199
               R   VF         S  F R +D +   TI  +   P+ +V  F S       ++
Sbjct: 889 HLIERVYKVFQHALHH-ETSLFFNRHIDQLVLCTIYGVCKKPSYSVSGFRSYRHSCDMAM 947

Query: 200 RNTLDFDFDDQEEGRWQSDEPPTLY--VFINCSTRELSVIE 238
           R TL  +F  Q+ G  +S +    Y  VF++ + + L  ++
Sbjct: 948 RMTLWINF--QKTGGLESGDIIKFYNDVFVHVTKKFLVQVD 986


>sp|B1H0H8|PURA_UNCTG Adenylosuccinate synthetase OS=Uncultured termite group 1 bacterium
           phylotype Rs-D17 GN=purA PE=3 SV=1
          Length = 429

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 104 GKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACI 154
           GK +  IDF  LP N   Y    ++ +DA I L +++ RK +E +E R  +
Sbjct: 377 GKVKGIIDFEKLPLNAQKYVKRLEQLVDAPIDL-ISLGRKREETIEVRKGV 426


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,924,292
Number of Sequences: 539616
Number of extensions: 5617504
Number of successful extensions: 16362
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 16357
Number of HSP's gapped (non-prelim): 16
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)