Query 016478
Match_columns 389
No_of_seqs 110 out of 186
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09353 DUF1995: Domain of un 100.0 2.5E-50 5.3E-55 376.4 23.7 206 82-345 1-208 (209)
2 PLN02842 nucleotide kinase 100.0 1.4E-47 3E-52 397.1 22.0 252 66-349 214-485 (505)
3 COG2326 Uncharacterized conser 70.0 42 0.0009 33.4 10.0 57 221-280 103-164 (270)
4 PF13466 STAS_2: STAS domain 41.0 1.6E+02 0.0035 22.5 8.2 63 89-164 11-73 (80)
5 PF04413 Glycos_transf_N: 3-De 37.1 1.2E+02 0.0026 28.0 6.9 120 134-287 34-155 (186)
6 KOG0448 Mitofusin 1 GTPase, in 35.4 42 0.00092 37.6 4.0 44 219-262 231-276 (749)
7 cd02932 OYE_YqiM_FMN Old yello 33.2 1.8E+02 0.0038 29.2 7.8 61 87-151 150-221 (336)
8 PF14258 DUF4350: Domain of un 26.8 98 0.0021 23.5 3.8 31 220-252 34-69 (70)
9 PF12362 DUF3646: DNA polymera 26.5 4.3E+02 0.0094 23.0 8.2 61 82-159 2-74 (117)
10 PF05722 Ustilago_mating: Usti 25.4 75 0.0016 30.7 3.3 94 6-101 150-243 (286)
11 TIGR00853 pts-lac PTS system, 23.8 70 0.0015 26.5 2.6 31 224-256 53-84 (95)
12 cd02929 TMADH_HD_FMN Trimethyl 23.4 3.5E+02 0.0075 27.8 8.0 60 87-151 146-217 (370)
13 TIGR00725 conserved hypothetic 23.3 1.2E+02 0.0025 27.5 4.1 33 221-256 92-124 (159)
14 cd02930 DCR_FMN 2,4-dienoyl-Co 22.8 3.4E+02 0.0073 27.5 7.8 64 86-154 132-207 (353)
15 PF03755 YicC_N: YicC-like fam 22.6 1.6E+02 0.0035 26.5 4.9 59 79-145 34-92 (159)
16 PRK09590 celB cellobiose phosp 22.5 85 0.0018 26.6 2.9 44 224-275 53-97 (104)
17 cd04735 OYE_like_4_FMN Old yel 22.2 3.3E+02 0.0071 27.6 7.6 58 87-149 140-209 (353)
18 COG4152 ABC-type uncharacteriz 21.9 1.2E+02 0.0026 30.4 4.1 34 231-266 187-223 (300)
19 COG1241 MCM2 Predicted ATPase 21.8 4.2E+02 0.009 29.9 8.7 114 227-355 284-410 (682)
20 cd02803 OYE_like_FMN_family Ol 21.2 5.2E+02 0.011 25.4 8.6 63 86-152 136-209 (327)
21 PF09822 ABC_transp_aux: ABC-t 20.6 1.2E+02 0.0026 29.2 3.9 38 219-258 196-237 (271)
22 cd04734 OYE_like_3_FMN Old yel 20.2 4.3E+02 0.0092 26.8 7.9 61 86-151 136-208 (343)
No 1
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=2.5e-50 Score=376.39 Aligned_cols=206 Identities=39% Similarity=0.623 Sum_probs=180.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCce--EEEEcCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcCCceEEEccCh
Q 016478 82 KPKSYEVLAADAANSLAFALQDGKTR--LEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDK 159 (389)
Q Consensus 82 lP~s~~eav~qA~~Av~~AL~dG~~R--leVEFP~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G~rvkv~fPD~ 159 (389)
||.|++|+++||++|+++||++|.+| +||+||+|.. .+++++++|++.|. +.|++++++|||+
T Consensus 1 lP~s~~ea~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------------~~~~la~~~~~~l~-~~~~~~~~~~pd~ 65 (209)
T PF09353_consen 1 LPSSLEEAVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------------SNMPLAREFARKLA-ASGRRVRVVFPDA 65 (209)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------------hHHHHHHHHHHHHH-hcCceEEEEcCCh
Confidence 79999999999999999999999988 5666998831 45899999999998 6789999999999
Q ss_pred hhHHHHHHHhhhccCCCCceeEEeccCCCCCccccccccccccCCCCcccccccCCCCCCCCcEEEEEecCCcchHHHHH
Q 016478 160 PEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEEGRWQSDEPPTLYVFINCSTRELSVIEK 239 (389)
Q Consensus 160 geaalAkr~~~~~~~~~~g~~i~~L~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ddi~Vvv~Ps~~el~~vE~ 239 (389)
|++++|+++|++.. +++.+|+++... ...+ ..++++|||+|++.+++++|+
T Consensus 66 g~~alA~~~~~~~~-----~~~~~l~~~~~~-------------------~~~~-----~~~~~~vvv~p~~~~l~~~e~ 116 (209)
T PF09353_consen 66 GEAALARRDWGDGS-----FKIASLDDWSSS-------------------EDES-----KFDDILVVVAPSPQELDDVEK 116 (209)
T ss_pred HHHHHHhccccCCC-----eEEeeccCcccc-------------------cccc-----ccCCEEEEEECChhhHHHHHH
Confidence 99999999996665 788888777551 0000 116999999999999999999
Q ss_pred HHHHhcCCccEEEEcCccchhccccCcCCCchHHHHHHhhcCceeeEEeeeeccCCCCCCCCcccccceEEEeEeCCCcE
Q 016478 240 YVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLHYRFLSQFTPVFYIRIREYSKTVPVAPFTINYSGALFRQYPGPWQ 319 (389)
Q Consensus 240 l~~~~a~~rPvVllNp~Ld~lrsD~gv~gf~~R~~r~~FLssFe~vYyLr~l~y~~~~~~~Pf~~~~~GaLfR~YPgpWQ 319 (389)
||+.. ++||||||||+|++++++. ||+++|++|++|+++||+||||||++|++ .|+||||||||||
T Consensus 117 ~~~~~-~~rpvvl~Np~l~~~~~~g--~g~~~r~~~~~Fl~~fe~vY~l~~l~~~~-----------~gal~r~yP~~Wq 182 (209)
T PF09353_consen 117 LCEAA-GGRPVVLLNPQLEDVRSVG--FGFPGRKLRERFLSSFETVYYLRPLRISG-----------NGALFRCYPGPWQ 182 (209)
T ss_pred HHHhc-CCCeEEEEecccccCCccc--cccccHHHHHHHHhhceEEEEEEeeccCC-----------cEEEEEeCCCCcE
Confidence 99964 5699999999999876555 79999999999999999999999998754 5999999999999
Q ss_pred EEEEccCCceEEeeeccCCCCchHHH
Q 016478 320 VMLKQADSSYACVAESETRFTLSETK 345 (389)
Q Consensus 320 V~~~~~~g~y~lvae~~~RPs~~E~~ 345 (389)
||+++++|+|+||+++++|||++|+.
T Consensus 183 v~~~~~~~~y~~v~~~~~rP~~~e~~ 208 (209)
T PF09353_consen 183 VFREDDDGEYECVAEFEERPTYEELE 208 (209)
T ss_pred EEEEcCCCcEEEEEecccCCChHHhh
Confidence 99999889999999999999998874
No 2
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.4e-47 Score=397.10 Aligned_cols=252 Identities=18% Similarity=0.250 Sum_probs=198.2
Q ss_pred hhccCCCCCCCCCCCC---CCCCHHH---HHHHHHHHHHHHHHcCCceEEEE--cCCCCCCCCCCCCCchHHHHHhHHHH
Q 016478 66 QTASSSLGPKAGVAIY---KPKSYEV---LAADAANSLAFALQDGKTRLEID--FPPLPSNISSYKGSSDEFIDANIQLA 137 (389)
Q Consensus 66 ~~a~~~~~~~~g~~~~---lP~s~~e---av~qA~~Av~~AL~dG~~RleVE--FP~L~~~ld~~~G~~d~~~~~n~~La 137 (389)
..|+..++.+.|.++. .|++.+. ..++|++||++|+++|++|++|| ||+|+.++|+|+-+.- ++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~~~~~~~~~~------~~l~ 287 (505)
T PLN02842 214 KKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTL------MELV 287 (505)
T ss_pred ccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcceEEEEEecCccccccccccchhH------HHHH
Confidence 4677888999998775 5999987 88999999999999999999887 9999999988874331 8999
Q ss_pred HHHHHHHHHhcCCceEEEccC-hhhHHHHHHHhhhccCCCCce-eEEeccCCCCCc-cccccccccccCCCCcccccccC
Q 016478 138 LAVVRKLQERMETRACIVFPD-KPEKGRASRLFKRALDSIDGI-TIGSLDDVPTGA-VRSFFSSIRNTLDFDFDDQEEGR 214 (389)
Q Consensus 138 ~~~a~~l~~~~G~rvkv~fPD-~geaalAkr~~~~~~~~~~g~-~i~~L~d~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 214 (389)
++|+..|+ +.|++||||||| +|+++++ +.+.+..|+ +|...+||++.. ++.|.. +++-.+..
T Consensus 288 ~~~~~~~~-~~~~~~kv~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~dw~~~~~~~~~~~---------~~~~~~~~ 352 (505)
T PLN02842 288 RVLALSFA-DDGKRVKVCVQGSMGEGALA-----GMPLQLAGTRKILEFMDWGDYGAKGTFVK---------IGAIGAKE 352 (505)
T ss_pred HHHHHHHh-hcCCceEEEecCCcchhHhc-----cCccccccchhhhhhccccccccccccee---------ecccccCC
Confidence 99999998 899999999999 8999881 222223333 122233333310 011110 00001123
Q ss_pred CCCCCCCcEEEEEecCC-c---chHHHHHHHHHhcCCccEEEEcCccchhccccCcCC-CchHHHHHHhhcCceeeEEee
Q 016478 215 WQSDEPPTLYVFINCST-R---ELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILG-FPSKDLHYRFLSQFTPVFYIR 289 (389)
Q Consensus 215 ~~~~~~ddi~Vvv~Ps~-~---el~~vE~l~~~~a~~rPvVllNp~Ld~lrsD~gv~g-f~~R~~r~~FLssFe~vYyLr 289 (389)
++ ++|++||+|+||+ + ++++||+||+ .+++|||||+||+|+++.+..|+ | +.+|++|++|+++|++|||||
T Consensus 353 ~~--~~d~~~i~v~P~~~v~~~~~~~~e~~~~-~~~~rpvillnp~LeD~~~~vGi-g~~~~R~~R~~f~~t~~~~Y~~~ 428 (505)
T PLN02842 353 VD--EEDDMFILVAPQNAVGNCIIDDLQAMTT-AAGKRPVILVNPRLKDLPGSSGI-MQTMGREQRLEYAASFENCYSFR 428 (505)
T ss_pred CC--CCCcEEEEEcCCccccccchHHHHHHHH-HhCCCeEEEECCcccccccccch-hHHHHHHHHHHHHHHhhheeEEE
Confidence 33 6789999999998 4 9999999999 57899999999999987777777 6 999999999999999999999
Q ss_pred eeccCCCCCCCCcccccceEEEeEeCCCcEEEEEcc----CCceEEeeeccCCCCchHHHHHHH
Q 016478 290 IREYSKTVPVAPFTINYSGALFRQYPGPWQVMLKQA----DSSYACVAESETRFTLSETKEELL 349 (389)
Q Consensus 290 ~l~y~~~~~~~Pf~~~~~GaLfR~YPgpWQV~~~~~----~g~y~lvae~~~RPs~~E~~d~ll 349 (389)
||++.+ ++++++|||+|+||++||||++++ +++|++++++++||+ +|.++.+|
T Consensus 429 ~l~~~~------~~~~~~gal~~~yp~~w~l~~~~~~~~~~~~y~~~~~~~~~P~-~e~i~~~~ 485 (505)
T PLN02842 429 LLYYAG------TQYPIMGALRMSYPYRYELYKRVDEENGKEKYIILATFSERPT-PDEINDAF 485 (505)
T ss_pred eccccc------cccccceeeeecCCCCeeEEEecCccccCcceEEeeecCCCCC-HHHHHHHh
Confidence 998765 456789999999999999998753 469999999999995 56656665
No 3
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=70.04 E-value=42 Score=33.39 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=43.7
Q ss_pred CcEEEEEecCCcc--hHHHHHHHHHhcCCccEEEEcCccchhccccCc---CCCchHHHHHHhhc
Q 016478 221 PTLYVFINCSTRE--LSVIEKYVEKFAMSTPALLFNLELDTLRADLGI---LGFPSKDLHYRFLS 280 (389)
Q Consensus 221 ddi~Vvv~Ps~~e--l~~vE~l~~~~a~~rPvVllNp~Ld~lrsD~gv---~gf~~R~~r~~FLs 280 (389)
.+++-+-+|+..| -..+++++..+-...=+|+||-.|- +..|| +||---+..++|+.
T Consensus 103 ~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviFdRSwY---nr~gVeRVmGfct~~q~~rfl~ 164 (270)
T COG2326 103 ARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIFDRSWY---NRAGVERVMGFCTPKQYKRFLR 164 (270)
T ss_pred eEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEechhhc---cccCeeeccccCCHHHHHHHHH
Confidence 4556666676655 4578999998777789999999998 58888 99987666677764
No 4
>PF13466 STAS_2: STAS domain
Probab=40.98 E-value=1.6e+02 Score=22.45 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcCCceEEEccChhhHHH
Q 016478 89 LAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRACIVFPDKPEKGR 164 (389)
Q Consensus 89 av~qA~~Av~~AL~dG~~RleVEFP~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G~rvkv~fPD~geaal 164 (389)
.+.+..++...++.+| ..+.|+|-.+. .+|+ +.+++-..+.+... ..|.++.+.-+.+.-..+
T Consensus 11 ~~~~l~~~l~~~~~~~-~~v~lDls~v~-~iDs----------agl~lL~~~~~~~~-~~g~~~~l~~~~~~~~~l 73 (80)
T PF13466_consen 11 TAPELRQALQALLASG-RPVVLDLSGVE-FIDS----------AGLQLLLAAARRAR-ARGRQLRLTGPSPALRRL 73 (80)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEECCCCC-eecH----------HHHHHHHHHHHHHH-HCCCeEEEEcCCHHHHHH
Confidence 4557778888888888 89999999986 3332 33777666666665 678888888766654433
No 5
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.11 E-value=1.2e+02 Score=27.97 Aligned_cols=120 Identities=18% Similarity=0.314 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHh-cCCceEEEccChhhHHHHHHHhhhccCCCCceeEEeccCCCCCccccccccccccCCCCcccccc
Q 016478 134 IQLALAVVRKLQER-METRACIVFPDKPEKGRASRLFKRALDSIDGITIGSLDDVPTGAVRSFFSSIRNTLDFDFDDQEE 212 (389)
Q Consensus 134 ~~La~~~a~~l~~~-~G~rvkv~fPD~geaalAkr~~~~~~~~~~g~~i~~L~d~~~~~~~~~~~~~~~~~g~~~~~~~~ 212 (389)
...+..+++.|.+. -+.++-|-+--....+.|++.+++.. .+....+|.... +..|+
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v----~~~~~P~D~~~~--~~rfl---------------- 91 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRV----DVQYLPLDFPWA--VRRFL---------------- 91 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-----SEEE---SSHHH--HHHHH----------------
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCe----EEEEeCccCHHH--HHHHH----------------
Confidence 45677788888622 24556555554556677777654432 122333321111 12222
Q ss_pred cCCCCCCCCcEEEEEecCCcchHHHHHHHHHhcCCccEEEEcCccchhccccCcCCCc-hHHHHHHhhcCceeeEE
Q 016478 213 GRWQSDEPPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFP-SKDLHYRFLSQFTPVFY 287 (389)
Q Consensus 213 ~~~~~~~~ddi~Vvv~Ps~~el~~vE~l~~~~a~~rPvVllNp~Ld~lrsD~gv~gf~-~R~~r~~FLssFe~vYy 287 (389)
+.|+ .+++|++-- +-++.+-..|. ..+-|++|+|+++.. ...-++. -+.+.+..++.|..++-
T Consensus 92 ~~~~----P~~~i~~Et--ElWPnll~~a~--~~~ip~~LvNarls~----~s~~~~~~~~~~~r~~l~~f~~i~a 155 (186)
T PF04413_consen 92 DHWR----PDLLIWVET--ELWPNLLREAK--RRGIPVVLVNARLSE----RSFRRYRRFPFLFRPLLSRFDRILA 155 (186)
T ss_dssp HHH------SEEEEES------HHHHHH-------S-EEEEEE------------------HHHHHHGGG-SEEEE
T ss_pred HHhC----CCEEEEEcc--ccCHHHHHHHh--hcCCCEEEEeeeecc----ccchhhhhhHHHHHHHHHhCCEEEE
Confidence 2344 367777644 33555555454 246899999999995 2111221 13567777888888765
No 6
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=42 Score=37.56 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCCcEEEEEecCCcchHHHHH-HHHHhcCCcc-EEEEcCccchhcc
Q 016478 219 EPPTLYVFINCSTRELSVIEK-YVEKFAMSTP-ALLFNLELDTLRA 262 (389)
Q Consensus 219 ~~ddi~Vvv~Ps~~el~~vE~-l~~~~a~~rP-vVllNp~Ld~lrs 262 (389)
.+.|++|+|...-.++..-|+ +-..++..+| |-++|.+||..++
T Consensus 231 ldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 231 LDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASAS 276 (749)
T ss_pred hcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcc
Confidence 456888888776554444333 2222333455 4578999996443
No 7
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.19 E-value=1.8e+02 Score=29.20 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcCCc
Q 016478 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETR 151 (389)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G~r 151 (389)
++.+++-.+|++.|.+.|-.-+||.. |..+.--|.| |++- +....+++++++.+.+..|..
T Consensus 150 ~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggsl---~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 150 AEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEY-GGSL---ENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCccc-CCCH---HHHhHHHHHHHHHHHHHcCCC
Confidence 45788889999999999999999985 6666556777 4332 233788889999887666654
No 8
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=26.82 E-value=98 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=19.6
Q ss_pred CCcEEEEEecC-----CcchHHHHHHHHHhcCCccEEE
Q 016478 220 PPTLYVFINCS-----TRELSVIEKYVEKFAMSTPALL 252 (389)
Q Consensus 220 ~ddi~Vvv~Ps-----~~el~~vE~l~~~~a~~rPvVl 252 (389)
++..+|+++|. +.++..+.+.++ .|++.||+
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~--~G~~lvl~ 69 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVE--AGNTLVLA 69 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHH--cCCEEEEe
Confidence 46789999997 244555555555 45565553
No 9
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=26.45 E-value=4.3e+02 Score=22.95 Aligned_cols=61 Identities=30% Similarity=0.360 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHH----HHHHHHHcCCceEEEE-------c-CCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcC
Q 016478 82 KPKSYEVLAADAAN----SLAFALQDGKTRLEID-------F-PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERME 149 (389)
Q Consensus 82 lP~s~~eav~qA~~----Av~~AL~dG~~RleVE-------F-P~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G 149 (389)
-|.||+++++-+.+ -+...|.+..++++.+ + |..+ -.|+.++.+.|.+.+|
T Consensus 2 ~~~sf~~lv~l~~~~rd~~L~~~le~~vrLV~f~pGrie~~~~~~ap-----------------~dl~~~L~~~L~~wTG 64 (117)
T PF12362_consen 2 RPASFEDLVALAREKRDIKLKVELERYVRLVRFEPGRIEFRPTPGAP-----------------KDLAQRLSRKLQEWTG 64 (117)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHHHHhCeeEEEecCCEEEEEeCCCCC-----------------HHHHHHHHHHHHHHhC
Confidence 37899988876643 3556677877555433 2 2222 3589999999988999
Q ss_pred CceEEEccCh
Q 016478 150 TRACIVFPDK 159 (389)
Q Consensus 150 ~rvkv~fPD~ 159 (389)
.+-.|-+.+.
T Consensus 65 ~rW~V~~s~~ 74 (117)
T PF12362_consen 65 QRWIVSLSNE 74 (117)
T ss_pred CCeEEEEeCC
Confidence 9877766554
No 10
>PF05722 Ustilago_mating: Ustilago B locus mating-type protein; InterPro: IPR008888 This domain consists of several Ustilago mating-type proteins. The b locus of the phytopathogenic fungus Ustilago maydis encodes a multiallelic recognition function that controls the ability of the fungus to form a dikaryon and complete the sexual stage of the life cycle. The b locus has at least 25 alleles and any combination of two different alleles, brought together by mating between haploid cells, allows the fungus to cause disease and undergo sexual development within the plant [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.39 E-value=75 Score=30.66 Aligned_cols=94 Identities=18% Similarity=0.076 Sum_probs=47.8
Q ss_pred hhHhhhchhHHhhhhccCCCccccccccCCCCccccccccceecccccCCCCccccCchhhhccCCCCCCCCCCCCCCCC
Q 016478 6 MASTLASPLSFLLLRHSLSPYIPRQHSVSSPLSKHQHSHQILCAKKSSSSNNSKQQKPKAQTASSSLGPKAGVAIYKPKS 85 (389)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~lP~s 85 (389)
|.||.-.-++-+-.-.|++-|-||||- ----|..-|-+-.--+|+- -+-..|||-..+-.-+.+-...-|...+.|++
T Consensus 150 ~cstadtsfssf~sn~sm~q~dpfq~~-dl~qsptl~arg~rkvkal-pkra~qq~p~e~~~~~n~esg~~~tc~pvpe~ 227 (286)
T PF05722_consen 150 MCSTADTSFSSFCSNLSMMQYDPFQQY-DLLQSPTLNARGNRKVKAL-PKRAAQQQPSEALYINNNESGSIDTCYPVPEE 227 (286)
T ss_pred hhcccccchhhhcccccccccCccchh-hhhhCCccccccCchhhhc-chhhhhcCCchhccccccccccccccccChhh
Confidence 455555555555556678888899882 1111111222211122221 13334433322223333334455667788999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016478 86 YEVLAADAANSLAFAL 101 (389)
Q Consensus 86 ~~eav~qA~~Av~~AL 101 (389)
+.-+..-+.+|...|-
T Consensus 228 ~k~~~sl~s~a~aqa~ 243 (286)
T PF05722_consen 228 RKTASSLASEAHAQAS 243 (286)
T ss_pred hccchhhhHHHHHHhh
Confidence 8888776666665543
No 11
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.76 E-value=70 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.9
Q ss_pred EEEEecCC-cchHHHHHHHHHhcCCccEEEEcCc
Q 016478 224 YVFINCST-RELSVIEKYVEKFAMSTPALLFNLE 256 (389)
Q Consensus 224 ~Vvv~Ps~-~el~~vE~l~~~~a~~rPvVllNp~ 256 (389)
+|++.|+. ..+++++++++. .+.||++++|+
T Consensus 53 vill~pqi~~~~~~i~~~~~~--~~ipv~~I~~~ 84 (95)
T TIGR00853 53 VVLLAPQVAYMLPDLKKETDK--KGIPVEVINGA 84 (95)
T ss_pred EEEECchHHHHHHHHHHHhhh--cCCCEEEeChh
Confidence 78889984 568889988873 35899999986
No 12
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=23.45 E-value=3.5e+02 Score=27.76 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCCc
Q 016478 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (389)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~r 151 (389)
++.+++-.+|+++|.+.|-.-+||.. |..+.=-|.| |++- .| +.+.+++.+.+.+..|..
T Consensus 146 ~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~y-GGsl----enR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 146 KRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEY-GGSL----ENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCcccc-CCCh----HhhhHHHHHHHHHHHHHcCCC
Confidence 34788888999999999999999982 5555434667 5543 44 788999999997666754
No 13
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.34 E-value=1.2e+02 Score=27.52 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=22.7
Q ss_pred CcEEEEEecCCcchHHHHHHHHHhcCCccEEEEcCc
Q 016478 221 PTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLE 256 (389)
Q Consensus 221 ddi~Vvv~Ps~~el~~vE~l~~~~a~~rPvVllNp~ 256 (389)
.|++|++ |. ..-.++++.+.+..++|++++|..
T Consensus 92 sda~Ivl-pG--G~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 92 ADVVVSV-GG--GYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred CCEEEEc-CC--chhHHHHHHHHHHcCCCEEEEECC
Confidence 4677766 54 445566666655568999999964
No 14
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.76 E-value=3.4e+02 Score=27.45 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCCceE
Q 016478 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETRAC 153 (389)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~rvk 153 (389)
.++.+++-.+|++.|.+.|-.-+||-. |..+.=-|.|-|+. .| ..+++++++.+.+..|..+.
T Consensus 132 I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGsl-----enR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSF-----ENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCH-----HHHhHHHHHHHHHHHHHcCCCce
Confidence 445788889999999999999999974 54454456674432 34 77888889888766676543
Q ss_pred E
Q 016478 154 I 154 (389)
Q Consensus 154 v 154 (389)
|
T Consensus 207 v 207 (353)
T cd02930 207 I 207 (353)
T ss_pred E
Confidence 3
No 15
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=22.64 E-value=1.6e+02 Score=26.47 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHH
Q 016478 79 AIYKPKSYEVLAADAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQ 145 (389)
Q Consensus 79 ~~~lP~s~~eav~qA~~Av~~AL~dG~~RleVEFP~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~ 145 (389)
.+.+|..+........+.++..+.-|+--+.|.+......... ...|.+++.++.+.+.
T Consensus 34 ~~rlP~~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~--------~~in~~l~~~y~~~l~ 92 (159)
T PF03755_consen 34 SIRLPRELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVE--------LRINEELAKAYYEALK 92 (159)
T ss_pred EEeCCHHHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCC--------cccCHHHHHHHHHHHH
Confidence 4679999999999999999999999998777775544311111 1245778888888775
No 16
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.52 E-value=85 Score=26.63 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=33.1
Q ss_pred EEEEecCC-cchHHHHHHHHHhcCCccEEEEcCccchhccccCcCCCchHHHH
Q 016478 224 YVFINCST-RELSVIEKYVEKFAMSTPALLFNLELDTLRADLGILGFPSKDLH 275 (389)
Q Consensus 224 ~Vvv~Ps~-~el~~vE~l~~~~a~~rPvVllNp~Ld~lrsD~gv~gf~~R~~r 275 (389)
+|++.||. ..+++++++++. .+.||.+++|+ +||++-+..+++-
T Consensus 53 vIll~PQi~~~~~~i~~~~~~--~~ipv~~I~~~------~Y~~~~~~~~~~~ 97 (104)
T PRK09590 53 LYLVSPQTKMYFKQFEEAGAK--VGKPVVQIPPQ------AYIPIPMGIEKMA 97 (104)
T ss_pred EEEEChHHHHHHHHHHHHhhh--cCCCEEEeCHH------HcCCCccCHHHHH
Confidence 78899985 468999999874 47899999986 5666556665543
No 17
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.23 E-value=3.3e+02 Score=27.60 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcC
Q 016478 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERME 149 (389)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G 149 (389)
++.+++-.+|+++|.+.|-.-+||.. |..+.=-|.|=|+. .| ..+++++.+.+.+..|
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eii~~vr~~vg 209 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSL-----ENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcH-----HHHHHHHHHHHHHHHHHhc
Confidence 45788889999999999999999985 76764456776653 34 7888899998875666
No 18
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.88 E-value=1.2e+02 Score=30.41 Aligned_cols=34 Identities=9% Similarity=0.333 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHh---cCCccEEEEcCccchhccccCc
Q 016478 231 TRELSVIEKYVEKF---AMSTPALLFNLELDTLRADLGI 266 (389)
Q Consensus 231 ~~el~~vE~l~~~~---a~~rPvVllNp~Ld~lrsD~gv 266 (389)
.--|+.||+||+.+ ..+++ ++++.++++|..+|.
T Consensus 187 sH~Me~vEeLCD~llmL~kG~~--V~~G~v~~ir~~~Gk 223 (300)
T COG4152 187 SHRMEHVEELCDRLLMLKKGQT--VLYGTVEDIRRSFGK 223 (300)
T ss_pred cchHHHHHHHhhhhheecCCce--EEeccHHHHHHhcCC
Confidence 35689999999984 43444 468999998888765
No 19
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=21.79 E-value=4.2e+02 Score=29.94 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=64.3
Q ss_pred EecCCcchHHHHHHHHH-hcCCccEEEEcCccchhccccCc--CCCch--HHHHHHhhcCcee-eEEeeeeccCCCCCCC
Q 016478 227 INCSTRELSVIEKYVEK-FAMSTPALLFNLELDTLRADLGI--LGFPS--KDLHYRFLSQFTP-VFYIRIREYSKTVPVA 300 (389)
Q Consensus 227 v~Ps~~el~~vE~l~~~-~a~~rPvVllNp~Ld~lrsD~gv--~gf~~--R~~r~~FLssFe~-vYyLr~l~y~~~~~~~ 300 (389)
++|+..+.++|++..-. +-++-+..+=++- ++|||..+ +|=|+ |..-.+|+..+-| .=|.-. . +|. +
T Consensus 284 iaPsIyG~e~VKkAilLqLfgGv~k~~~~g~--~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsg-k--gss--~ 356 (682)
T COG1241 284 IAPSIYGHEDVKKAILLQLFGGVKKNLPDGT--RIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSG-K--GSS--A 356 (682)
T ss_pred hcccccCcHHHHHHHHHHhcCCCcccCCCCc--ccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcc-c--ccc--c
Confidence 58888888888875332 2233333333333 46788877 66554 6544555554433 111111 0 100 0
Q ss_pred Ccccccce--EEEeEeCCCcEEEEEcc-----CCceEEeeeccCCCCchHHHHHHHHhhcCC
Q 016478 301 PFTINYSG--ALFRQYPGPWQVMLKQA-----DSSYACVAESETRFTLSETKEELLRVLGLQ 355 (389)
Q Consensus 301 Pf~~~~~G--aLfR~YPgpWQV~~~~~-----~g~y~lvae~~~RPs~~E~~d~ll~a~gl~ 355 (389)
-| |....-|.-|+-+++-+ +++..||.+|+.++ .+.-..|..||+-+
T Consensus 357 ------~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~--~~dr~aihEaMEQQ 410 (682)
T COG1241 357 ------AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN--EEDRVAIHEAMEQQ 410 (682)
T ss_pred ------cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC--hHHHHHHHHHHHhc
Confidence 12 34444465555334333 78999999999999 56667788888543
No 20
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.23 E-value=5.2e+02 Score=25.36 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHhcCCce
Q 016478 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDANIQLALAVVRKLQERMETRA 152 (389)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~~~~G~rv 152 (389)
.++.+++-.+|++.|.+.|-.-+||.. |..+.--|.|-|+.+ ....+.+++.+.+.+..|..+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~e----nr~r~~~eii~avr~~~g~d~ 209 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLE----NRARFLLEIVAAVREAVGPDF 209 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHH----HHHHHHHHHHHHHHHHcCCCc
Confidence 445788899999999999999999883 333444566644331 226778888888875665543
No 21
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=20.56 E-value=1.2e+02 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCcEEEEEecCC----cchHHHHHHHHHhcCCccEEEEcCccc
Q 016478 219 EPPTLYVFINCST----RELSVIEKYVEKFAMSTPALLFNLELD 258 (389)
Q Consensus 219 ~~ddi~Vvv~Ps~----~el~~vE~l~~~~a~~rPvVllNp~Ld 258 (389)
++.+++|++.|.. .|+..+.++.+ .|++.+|+++|.-.
T Consensus 196 ~~~d~Lvi~~P~~~ls~~e~~~l~~yl~--~GG~ll~~~d~~~~ 237 (271)
T PF09822_consen 196 DDADVLVIAGPKTDLSEEELYALDQYLM--NGGKLLILLDPFSV 237 (271)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHH--cCCeEEEEECCccc
Confidence 5679999999974 46777777777 67899999999843
No 22
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.25 E-value=4.3e+02 Score=26.76 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCCc
Q 016478 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (389)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~r 151 (389)
.++.+++-..|++.|.+.|-.-+||.. |-.+.--|.| |++- .| ..+++++++.+.+..|..
T Consensus 136 I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y-GGsl----enR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 136 IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY-GGSL----ENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcC-CCCH----HHHhHHHHHHHHHHHHHcCCC
Confidence 356888889999999999999999984 4444334677 4442 34 688889999887666653
Done!