Query 016478
Match_columns 389
No_of_seqs 110 out of 186
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rp4_A Transcription factor P5 42.2 12 0.00042 29.0 2.0 24 314-338 8-31 (76)
2 3nbm_A PTS system, lactose-spe 29.0 32 0.0011 28.0 2.7 31 224-256 56-87 (108)
3 2hsa_B 12-oxophytodienoate red 28.8 1.3E+02 0.0046 29.7 7.7 61 84-149 164-236 (402)
4 1icp_A OPR1, 12-oxophytodienoa 27.7 1.7E+02 0.0059 28.5 8.2 62 84-150 160-233 (376)
5 3kru_A NADH:flavin oxidoreduct 23.7 1.8E+02 0.0062 28.1 7.4 65 82-151 131-210 (343)
6 3hgj_A Chromate reductase; TIM 23.0 3.8E+02 0.013 25.5 9.6 66 80-150 138-218 (349)
7 2r14_A Morphinone reductase; H 20.3 2.2E+02 0.0077 27.7 7.4 62 84-150 159-232 (377)
8 3hhl_A RPA0582; alpha-beta-bar 20.2 59 0.002 27.8 2.8 48 235-284 11-60 (143)
9 3l5l_A Xenobiotic reductase A; 19.6 2.7E+02 0.0093 26.8 7.8 59 87-150 154-224 (363)
10 1vyr_A Pentaerythritol tetrani 18.5 2.4E+02 0.0084 27.2 7.2 62 84-150 154-227 (364)
No 1
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=42.19 E-value=12 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred eCCCcEEEEEccCCceEEeeeccCC
Q 016478 314 YPGPWQVMLKQADSSYACVAESETR 338 (389)
Q Consensus 314 YPgpWQV~~~~~~g~y~lvae~~~R 338 (389)
-|..|+|=+.. +|.|+++-+.+.+
T Consensus 8 ~p~dW~VsRt~-dGdYrL~itcpkK 31 (76)
T 2rp4_A 8 SAAEWNVSRTP-DGDYRLAITCPNK 31 (76)
T ss_dssp SSCCCEEECCT-TTBEEEEEEESCH
T ss_pred CCccceeeecc-CCceEEEEEeCcH
Confidence 48999999877 9999999887654
No 2
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.04 E-value=32 Score=28.03 Aligned_cols=31 Identities=3% Similarity=-0.017 Sum_probs=25.2
Q ss_pred EEEEecCC-cchHHHHHHHHHhcCCccEEEEcCc
Q 016478 224 YVFINCST-RELSVIEKYVEKFAMSTPALLFNLE 256 (389)
Q Consensus 224 ~Vvv~Ps~-~el~~vE~l~~~~a~~rPvVllNp~ 256 (389)
+|++.||. ..++++++.++. .+.||.++|++
T Consensus 56 vvLLgPQV~y~~~~ik~~~~~--~~ipV~vI~~~ 87 (108)
T 3nbm_A 56 LIILAPQVRSYYREMKVDAER--LGIQIVATRGM 87 (108)
T ss_dssp EEEECGGGGGGHHHHHHHHTT--TTCEEEECCHH
T ss_pred EEEEChHHHHHHHHHHHHhhh--cCCcEEEeCHH
Confidence 57789995 578999998873 37999999985
No 3
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=28.81 E-value=1.3e+02 Score=29.67 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcC
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERME 149 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G 149 (389)
...++.+++-.+|++.|.+.|-.-+||.. |..+.--|.|=|+. .| ..+++++++.+.+..|
T Consensus 164 ~eI~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGsl-----enR~rf~~Eiv~aVr~avg 236 (402)
T 2hsa_B 164 YEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSL-----ANRCKFITQVVQAVVSAIG 236 (402)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcCh-----hhhhHHHHHHHHHHHHHhC
Confidence 35667888889999999999999999996 77765567775442 34 7788888888865555
No 4
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=27.75 E-value=1.7e+02 Score=28.50 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCC
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~ 150 (389)
...++.+++-.+|++.|.+.|-.-+||.. |..+.--|.|-|+. .| ..+++++++.+.+..|.
T Consensus 160 ~eI~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eiv~aVr~avg~ 233 (376)
T 1icp_A 160 DEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSL-----ENRCRFALEIVEAVANEIGS 233 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccH-----HHhHHHHHHHHHHHHHHhcC
Confidence 46677888999999999999999999984 66664456675543 34 67888888888655553
No 5
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=23.69 E-value=1.8e+02 Score=28.08 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=46.6
Q ss_pred CCCCHH---HHHHHHHHHHHHHHHcCCceEEEE---------c--CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHH
Q 016478 82 KPKSYE---VLAADAANSLAFALQDGKTRLEID---------F--PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQE 146 (389)
Q Consensus 82 lP~s~~---eav~qA~~Av~~AL~dG~~RleVE---------F--P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~ 146 (389)
-+-+.+ +.+++=.+|++.|.+.|-.-+||. | |..+.--|.|=|+. .| ..+++++.+.+.+
T Consensus 131 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGsl-----enR~rf~~eiv~aVr~ 205 (343)
T 3kru_A 131 RELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSI-----ENRARFLIEVIDEVRK 205 (343)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHTHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccch-----HhHHHHHHHHHHHHHh
Confidence 344444 477788899999999999999999 3 66554456775533 34 6788899998876
Q ss_pred hcCCc
Q 016478 147 RMETR 151 (389)
Q Consensus 147 ~~G~r 151 (389)
..|..
T Consensus 206 avg~d 210 (343)
T 3kru_A 206 NWPEN 210 (343)
T ss_dssp TSCTT
T ss_pred cCCcc
Confidence 66643
No 6
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=23.00 E-value=3.8e+02 Score=25.53 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=47.4
Q ss_pred CCCCCCHH---HHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHH
Q 016478 80 IYKPKSYE---VLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKL 144 (389)
Q Consensus 80 ~~lP~s~~---eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l 144 (389)
.+-+-|.+ +.+++=.+|++.|.+.|-.-+||.. |..+.--|.|-|+. .| ..+++++++.+
T Consensus 138 ~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eiv~aV 212 (349)
T 3hgj_A 138 VPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSL-----ENRMRFPLQVAQAV 212 (349)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCH-----HHHHHHHHHHHHHH
Confidence 33344554 4778888999999999999999983 66664456775543 34 67888888888
Q ss_pred HHhcCC
Q 016478 145 QERMET 150 (389)
Q Consensus 145 ~~~~G~ 150 (389)
.+..|.
T Consensus 213 R~avG~ 218 (349)
T 3hgj_A 213 REVVPR 218 (349)
T ss_dssp HHHSCT
T ss_pred HHHhcC
Confidence 756664
No 7
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=20.28 E-value=2.2e+02 Score=27.72 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCC
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~ 150 (389)
...++.+++-.+|++.|.+.|-.-+||.. |..+.--|.|=|+. .| ..+++++++.+.+..|.
T Consensus 159 ~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGsl-----enR~r~~~eiv~aVr~avg~ 232 (377)
T 2r14_A 159 DEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSI-----ENRARFPLEVVDAVAEVFGP 232 (377)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcch-----hhchHHHHHHHHHHHHHcCC
Confidence 35566888888999999999999999984 76664456775432 33 67888888888655553
No 8
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=20.22 E-value=59 Score=27.79 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCccEEEEcCc-cchhccccCc-CCCchHHHHHHhhcCcee
Q 016478 235 SVIEKYVEKFAMSTPALLFNLE-LDTLRADLGI-LGFPSKDLHYRFLSQFTP 284 (389)
Q Consensus 235 ~~vE~l~~~~a~~rPvVllNp~-Ld~lrsD~gv-~gf~~R~~r~~FLssFe~ 284 (389)
++++++.+ ...++||+|||.= +.. +.++.- .....++.=.++...+.+
T Consensus 11 ~~~~~~~~-~~~~~pv~MlNLlrf~~-~a~y~dg~~vtd~e~y~~Y~~~~~~ 60 (143)
T 3hhl_A 11 EVFAQFRA-NDREGPIHMLNLVRLRP-RAAYPDGRETTGAEAYAAYGRDSGP 60 (143)
T ss_dssp HHHHHHHH-CCCSSCEEEEEEEEECS-BCCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCEEEEehhcccc-cccCCCCCCcCCHHHHHHHHHHHHH
Confidence 56677665 5678999999963 332 233321 113344444445555444
No 9
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=19.60 E-value=2.7e+02 Score=26.81 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCC
Q 016478 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (389)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~ 150 (389)
++.+++=.+|++.|.+.|-.-+||.. |..+.--|.|-|+. .| ..+++++.+.+.+..|.
T Consensus 154 ~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsl-----enR~r~~~eiv~aVr~avg~ 224 (363)
T 3l5l_A 154 ARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSF-----DNRSRFLLETLAAVREVWPE 224 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCH-----HHHHHHHHHHHHHHHHHcCC
Confidence 34778888999999999999999983 55554456775543 34 67888898888755564
No 10
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=18.53 E-value=2.4e+02 Score=27.24 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCC
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~ 150 (389)
+...+.+++-.+|++.|.+.|-.-+||.. |..+.--|.|=|+. .| ..+++++++.+.+..|.
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGsl-----enr~r~~~eiv~avr~~vg~ 227 (364)
T 1vyr_A 154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSV-----ENRARLVLEVVDAVCNEWSA 227 (364)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHTHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcch-----hcChhhHHHHHHHHHHhcCC
Confidence 35566888888999999999999999963 66664456674442 33 67888888888755553
Done!