Query 016478
Match_columns 389
No_of_seqs 110 out of 186
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1djqa1 c.1.4.1 (A:1-340) Trim 25.5 1.3E+02 0.0095 26.3 9.2 61 86-151 144-216 (340)
2 d1rcua_ c.129.1.1 (A:) Hypothe 21.7 42 0.0031 27.1 4.4 37 220-259 96-134 (170)
3 d1vhua_ c.50.1.2 (A:) Hypothet 19.9 1.8E+02 0.013 23.0 8.3 71 89-170 115-189 (192)
4 d1z1ba1 d.10.1.4 (A:11-59) lam 19.8 19 0.0014 24.1 1.4 27 73-99 18-44 (49)
5 d1iiba_ c.44.2.1 (A:) Enzyme I 18.7 23 0.0016 26.8 1.8 29 224-256 51-80 (103)
6 d1w25a3 d.58.29.2 (A:294-455) 18.4 48 0.0035 25.2 3.9 25 84-108 132-156 (162)
7 d1bg6a2 c.2.1.6 (A:4-187) N-(1 14.5 1.1E+02 0.0079 23.3 5.2 29 136-165 12-40 (184)
8 d1vp7a_ a.7.13.1 (A:) Exonucle 12.5 82 0.006 21.9 3.4 24 81-105 3-26 (68)
9 d1icpa_ c.1.4.1 (A:) 12-oxophy 11.9 3.9E+02 0.029 23.2 9.0 62 84-150 151-224 (364)
10 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 11.8 3.9E+02 0.028 23.0 8.8 60 87-151 137-208 (330)
No 1
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=25.54 E-value=1.3e+02 Score=26.34 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCCc
Q 016478 86 YEVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (389)
Q Consensus 86 ~~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~r 151 (389)
.++.+++-.+|+++|.+.|-.-+||-. |-.+.--|.| |++- .| +.+.+++.+.+.+..|..
T Consensus 144 I~~ii~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~y-GGs~----enR~Rf~~EIi~aIr~~vg~~ 216 (340)
T d1djqa1 144 IAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKY-GGSL----ENRARFWLETLEKVKHAVGSD 216 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTT-SSSH----HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccc-cccH----HhhhHHHHHHHHHHHHHHhhh
Confidence 334788889999999999999999982 6666556788 4443 45 788899999887666654
No 2
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=21.69 E-value=42 Score=27.07 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCcEEEEEecCCcchHHHHHHHHHhcCCccEEEEcCc--cch
Q 016478 220 PPTLYVFINCSTRELSVIEKYVEKFAMSTPALLFNLE--LDT 259 (389)
Q Consensus 220 ~ddi~Vvv~Ps~~el~~vE~l~~~~a~~rPvVllNp~--Ld~ 259 (389)
..|++|+ .|. .+-.++++.+.+.-.+|+|++|.. |++
T Consensus 96 ~sda~I~-lPG--G~GTl~El~~a~~l~KPiilln~~g~w~~ 134 (170)
T d1rcua_ 96 NADVVVS-IGG--EIGTAIEILGAYALGKPVILLRGTGGWTD 134 (170)
T ss_dssp TCSEEEE-ESC--CHHHHHHHHHHHHTTCCEEEETTSCHHHH
T ss_pred cccceee-ecc--ccchHHHHHHHHHhCCceEEecCCCchHH
Confidence 3467765 474 345566666665567999999854 654
No 3
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.91 E-value=1.8e+02 Score=23.02 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHH-HHHHHHHHcCCceEEEEcCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHH---HhcCCceEEEccChhhHHH
Q 016478 89 LAADAA-NSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQ---ERMETRACIVFPDKPEKGR 164 (389)
Q Consensus 89 av~qA~-~Av~~AL~dG~~RleVEFP~L~~~ld~~~G~~d~~~~~n~~La~~~a~~l~---~~~G~rvkv~fPD~geaal 164 (389)
.+.+|. .+++.|.+.|.+ .|=||.|.++.-+++ . -..|+.+.+.+. ...-++|+++.-|...+..
T Consensus 115 ~L~~~~~~~L~~A~~~~~~--SIA~P~lgtG~~g~p--------~-~~~a~~~~~ai~~f~~~~l~~V~~v~~~~~~~~~ 183 (192)
T d1vhua_ 115 KLYKAFLGPLEKAEEMGVE--SIAFPAVSAGIYGCD--------L-EKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEV 183 (192)
T ss_dssp HHHHHHHHHHHHHHHHTCC--EEEECCTTSSTTCCC--------H-HHHHHHHHHHHHHCCCSSCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc--EEEecCccCCCCCCC--------H-HHHHHHHHHHHHHhccCCcCEEEEEECCHHHHHH
Confidence 344443 344555555544 677999986554433 1 122333434333 2234789999888888777
Q ss_pred HHHHhh
Q 016478 165 ASRLFK 170 (389)
Q Consensus 165 Akr~~~ 170 (389)
-++.|+
T Consensus 184 ~~~~~~ 189 (192)
T d1vhua_ 184 ALKVFE 189 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 4
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=19.80 E-value=19 Score=24.14 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 016478 73 GPKAGVAIYKPKSYEVLAADAANSLAF 99 (389)
Q Consensus 73 ~~~~g~~~~lP~s~~eav~qA~~Av~~ 99 (389)
+|..|.-..|=.|..+|+.||.+|=..
T Consensus 18 ~P~tGk~~~LG~d~~~A~~~AieAN~~ 44 (49)
T d1z1ba1 18 DPRTGKEFGLGRDRRIAITEAIQANIE 44 (49)
T ss_dssp CTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCCCceecCCccHHHHHHHHHHHHHH
Confidence 677787777878999999999998654
No 5
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]}
Probab=18.73 E-value=23 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=23.6
Q ss_pred EEEEecCC-cchHHHHHHHHHhcCCccEEEEcCc
Q 016478 224 YVFINCST-RELSVIEKYVEKFAMSTPALLFNLE 256 (389)
Q Consensus 224 ~Vvv~Ps~-~el~~vE~l~~~~a~~rPvVllNp~ 256 (389)
+|+++||. ..++.+++++. +.||.+++|+
T Consensus 51 viLl~PQv~~~~~~i~~~~~----~~pv~vI~~~ 80 (103)
T d1iiba_ 51 VVLLGPQIAYMLPEIQRLLP----NKPVEVIDSL 80 (103)
T ss_dssp EEEECGGGGGGHHHHHHHCT----TSCEEECCHH
T ss_pred EEEECHHHHHHHHHHHHHcC----CCCEEEeChH
Confidence 67899995 67888888764 5899999985
No 6
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=18.43 E-value=48 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceE
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRL 108 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~Rl 108 (389)
.+.++++++|-.|+..|-+.|++|+
T Consensus 132 ~~~~~ll~~A~~AL~~AK~~G~n~v 156 (162)
T d1w25a3 132 DTPEALLKRADEGVYQAKASGRNAV 156 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeE
Confidence 6799999999999999999999886
No 7
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Probab=14.55 E-value=1.1e+02 Score=23.29 Aligned_cols=29 Identities=10% Similarity=-0.200 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCceEEEccChhhHHHH
Q 016478 136 LALAVVRKLQERMETRACIVFPDKPEKGRA 165 (389)
Q Consensus 136 La~~~a~~l~~~~G~rvkv~fPD~geaalA 165 (389)
+...++..|+ +.|..|.++-.++...+..
T Consensus 12 ~G~~~A~~l~-~~G~~V~~~~r~~~~~~~~ 40 (184)
T d1bg6a2 12 GGHAFAAYLA-LKGQSVLAWDIDAQRIKEI 40 (184)
T ss_dssp HHHHHHHHHH-HTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHH-HCCCEEEEEECCHHHHHHH
Confidence 4566778887 6788999888776544433
No 8
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=12.54 E-value=82 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Q 016478 81 YKPKSYEVLAADAANSLAFALQDGK 105 (389)
Q Consensus 81 ~lP~s~~eav~qA~~Av~~AL~dG~ 105 (389)
+.|.||++++.+-.+-|.. |++|.
T Consensus 3 ~~p~sfEe~l~~LE~IV~~-LE~g~ 26 (68)
T d1vp7a_ 3 PLPQDFETALAELESLVSA-MENGT 26 (68)
T ss_dssp CBCCSHHHHHHHHHHHHHH-HHTTC
T ss_pred CCCCCHHHHHHHHHHHHHH-HhCCC
Confidence 5789999999987766655 88883
No 9
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=11.88 E-value=3.9e+02 Score=23.25 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEE---------c--CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCC
Q 016478 84 KSYEVLAADAANSLAFALQDGKTRLEID---------F--PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMET 150 (389)
Q Consensus 84 ~s~~eav~qA~~Av~~AL~dG~~RleVE---------F--P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~ 150 (389)
.+.++.+++=..|++.|.+.|-.-+||. | |..+.=-|.|=|+. .| +.+.+++.+.+.+..|.
T Consensus 151 ~eI~~ii~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsl-----eNR~Rf~~Eii~aIr~~~g~ 224 (364)
T d1icpa_ 151 DEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSL-----ENRCRFALEIVEAVANEIGS 224 (364)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchh-----hhhhhHHHHHhhhhhcccCC
Confidence 4688899999999999999999999997 2 56665567885543 46 78888998888755553
No 10
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.82 E-value=3.9e+02 Score=22.97 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEEc-----------CCCCCCCCCCCCCchHHHHHh-HHHHHHHHHHHHHhcCCc
Q 016478 87 EVLAADAANSLAFALQDGKTRLEIDF-----------PPLPSNISSYKGSSDEFIDAN-IQLALAVVRKLQERMETR 151 (389)
Q Consensus 87 ~eav~qA~~Av~~AL~dG~~RleVEF-----------P~L~~~ld~~~G~~d~~~~~n-~~La~~~a~~l~~~~G~r 151 (389)
++.+++-.+|++.|.+.|-.-+||-- |..+.=-|.|=|+. .| +.+.+++.+.+.+..|..
T Consensus 137 ~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~-----enR~Rf~~Eii~air~~vg~d 208 (330)
T d1ps9a1 137 LQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDY-----RNRMRFAVEVVRAVRERVGND 208 (330)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSH-----HHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccH-----hhhhHHHHHHHHHHHHHcCCC
Confidence 34778889999999999999999982 66665557775443 45 788999999887666754
Done!