BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016480
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
LGHGD D +P L +L + Q+
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQI 270
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 63
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 122
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 180
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSS 371
+Y WG G G LG GD D+ +PE ++S
Sbjct: 181 DLYGWGWGRYGNLGLGDRTDRLVPERVTS 209
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 7/269 (2%)
Query: 114 MQITTGRYHTLLISNS--SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ +T G HT+ S S V+S G G LGHG ++ + I + Q++
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACG 117
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
++H V G+V + G N + G DT + P+ ++A +G+ K V AG T +
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAEHTAAV 176
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 291
T G ++ G +G LG GD DR P+ + + +A G + ++V+ +G +Y
Sbjct: 177 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-KMSMVACGWRHTISVSYSGALY 235
Query: 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351
++G LGHG+ D L P ++ + ++S G H +AL S G +Y WG
Sbjct: 236 TYGWSKYGQLGHGDLEDHLIPHKLEALSNS--FISQISGGWRHTMALTSDGKLYGWGWNK 293
Query: 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
G +G G+ +D+ P + VQV
Sbjct: 294 FGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMALTSDGKLYG 288
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVKFI 383
G GD D +P+ + + + +++K +
Sbjct: 142 GLGDTEDSLVPQKIQAFE---GIRIKMV 166
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 276
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 332
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 333 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
LGHGD D +P L +L + Q+
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQI 270
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 63
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 122
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 180
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSS 371
+Y WG G G LG GD D+ +PE ++S
Sbjct: 181 DLYGWGWGRYGNLGLGDRTDRLVPERVTS 209
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 7/269 (2%)
Query: 114 MQITTGRYHTLLISNS--SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ +T G HT+ S S V+S G G LGHG ++ + I + Q++
Sbjct: 59 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACG 117
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
++H V G+V + G N + G DT + P+ ++A +G+ K V AG T +
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAEHTAAV 176
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 291
T G ++ G +G LG GD DR P+ + + +A G + ++V+ +G +Y
Sbjct: 177 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-KMSMVACGWRHTISVSYSGALY 235
Query: 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351
++G LGHG+ D L P ++ + ++S G H +AL S G +Y WG
Sbjct: 236 TYGWSKYGQLGHGDLEDHLIPHKLEALSNS--FISQISGGFRHTMALTSDGKLYGWGWNK 293
Query: 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
G +G G+ +D+ P + VQV
Sbjct: 294 FGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGFRHTMALTSDGKLYG 288
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVKFI 383
G GD D +P+ + + + +++K +
Sbjct: 142 GLGDTEDSLVPQKIQAFE---GIRIKMV 166
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 7/267 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
LGHGD D +P L +L + Q+
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQI 282
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 75
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 134
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 135 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKMVAAGAEHTAAVTEDG 192
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSS 371
+Y WG G G LG GD D+ +PE ++S
Sbjct: 193 DLYGWGWGRYGNLGLGDRTDRLVPERVTS 221
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 7/269 (2%)
Query: 114 MQITTGRYHTLLISNS--SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ +T G HT+ S S V+S G G LGHG ++ + I + Q++
Sbjct: 71 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACG 129
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
++H V G+V + G N + G DT + P+ ++A +G+ K V AG T +
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAEHTAAV 188
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 291
T G ++ G +G LG GD DR P+ + + +A G + ++V+ +G +Y
Sbjct: 189 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-KMSMVACGWRHTISVSYSGALY 247
Query: 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351
++G LGHG+ D L P ++ + ++S G H +AL S G +Y WG
Sbjct: 248 TYGWSKYGQLGHGDLEDHLIPHKLEALSNS--FISQISGGWRHTMALTSDGKLYGWGWNK 305
Query: 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
G +G G+ +D+ P + VQV
Sbjct: 306 FGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 183
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 241
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMALTSDGKLYG 300
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 301 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 359 GQLGIGESVDRNFPKIIEAL 378
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 295
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 95
Query: 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 355
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 96 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 153
Query: 356 GHGDEIDKTLPEPLSSLKSHLAVQVKFI 383
G GD D +P+ + + + +++K +
Sbjct: 154 GLGDTEDSLVPQKIQAFE---GIRIKMV 178
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 236
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 353
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 288
Query: 175 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 344
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 273
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 345 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 73
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 7/267 (2%)
Query: 116 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 175 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 353
G G LG G++ D L P + + G V+ G H +++ SG +YT+G G
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKXSXVACGWRHTISVSYSGALYTYGWSKYG 245
Query: 354 ALGHGDEIDKTLPEPLSSLKSHLAVQV 380
LGHGD D +P L +L + Q+
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQI 272
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 7/209 (3%)
Query: 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRLVEALKGVPCKQVTA 223
V+ +SA +H+ +L V + G GH D +RP P + AL G VT
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP--SPTQLSALDGHQIVSVTC 65
Query: 224 GLNFTGFLTIRG-HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 282
G + T + G V++ G G+LGHG++ D TP I L + + QIA G S+ L
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI-RIKQIACGDSHCL 124
Query: 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
AVT G V S+G N LG G+ D L P+ IQ F +GI + V+AG EH A+ G
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF--EGIRIKXVAAGAEHTAAVTEDG 182
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEPLSS 371
+Y WG G G LG GD D+ +PE ++S
Sbjct: 183 DLYGWGWGRYGNLGLGDRTDRLVPERVTS 211
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 9/270 (3%)
Query: 114 MQITTGRYHTLLISNS--SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ +T G HT+ S S V+S G G LGHG ++ + I + Q++
Sbjct: 61 VSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACG 119
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
++H V G+V + G N + G DT + P+ ++A +G+ K V AG T +
Sbjct: 120 DSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKXVAAGAEHTAAV 178
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVV 290
T G ++ G +G LG GD DR P+ + E S V A G + ++V+ +G +
Sbjct: 179 TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXV--ACGWRHTISVSYSGAL 236
Query: 291 YSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350
Y++G LGHG+ D L P ++ + ++S G H AL S G +Y WG
Sbjct: 237 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNS--FISQISGGARHTXALTSDGKLYGWGWN 294
Query: 351 YCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
G +G G+ +D+ P + VQV
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 324
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 8/260 (3%)
Query: 115 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 173
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAE 173
Query: 174 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 232
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVS 231
Query: 233 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
G ++T G + +GQLGHGD D P + L + QI+ G + A+T +G +Y
Sbjct: 232 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGARHTXALTSDGKLYG 290
Query: 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 352
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 291 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Query: 353 GALGHGDEIDKTLPEPLSSL 372
G LG G+ +D+ P+ + +L
Sbjct: 349 GQLGIGESVDRNFPKIIEAL 368
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 116 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 174
+ G HT ++ + ++ G G LG G T + V R+ V+ H
Sbjct: 168 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKXSXVACGWRH 226
Query: 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 227 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGARHTXALTSD 285
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 343
Query: 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 322
G G+N LG GE D P+ I+ G
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEALSVDG 372
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 63
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 8/264 (3%)
Query: 113 NMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
+ + +G H L L S V+S G + G LGHG + C I VV V+A
Sbjct: 109 KVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TG 229
H+A V +G ++T G GH D+ + +P+LVEAL+G + G T
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV 289
LT V + G +G+LG G + P I L +G VV++ G + +A+T +G
Sbjct: 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG-VVKVECGSQFSVALTKSGA 285
Query: 290 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349
VY++G G LGHG +PR +Q +G V+ ++ G H V G VYTWG
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGL--QGKKVIAIATGSLHCVCCTEDGEVYTWGD 343
Query: 350 GYCGALGHGDEIDKTLPEPLSSLK 373
G LG G P +++L+
Sbjct: 344 NDEGQLGDGTTNAIQRPRLVAALQ 367
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)
Query: 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL 225
V V++ H + G+V++ G+ GH + + P RPR++E+L+G+ V AG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGG 168
Query: 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLA 283
+ +T G ++T G +G+LGH D+ D+ PK + L+ VV IA +G + L
Sbjct: 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH-RVVDIACGSGDAQTLC 227
Query: 284 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 343
+T + V+S+G G LG G P I + G+ VV+V G + VAL SG
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGA 285
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV 380
VYTWGKG LGHG + P + L+ + +
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI 322
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 5/272 (1%)
Query: 117 TTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAA 176
++GR + + +++ G + G LG G E + T + VQ+ E
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIR 234
V G+++ G + G T + P L+E+++ V K+V +G L+
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 294
G V++ G G+LGHG+ P+ I L + VV +AAG ++ VT G +Y++G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 295 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA 354
G LGH + D+L+P+ ++ + + + +GD + L V++WG G G
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 355 LGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNF 386
LG G +P + SL V+V+ F
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF 276
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 113 NMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS 171
++ +G TL L + +V+S G G LG G + C +I+ + VV+V
Sbjct: 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG-SDGCKVPMKIDSLTGLGVVKVECG 273
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231
+ + +SG V+T G GH ++ + RPR V+ L+G + G
Sbjct: 274 SQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCC 332
Query: 232 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLA 283
T G V+T G N GQLG G T P+ +A L+ V ++A G ++ LA
Sbjct: 333 TEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK-KVNRVACGSAHTLA 383
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 49 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 100
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 153
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 154 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 213
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 214 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 273
Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSL 372
V S G H V +DS G Y+ G+ G LG G+ +K++P +S L
Sbjct: 274 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 325
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 117/279 (41%), Gaps = 43/279 (15%)
Query: 131 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 242
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 76 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 243 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 127 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 181
Query: 298 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 343
LG G Q E L P+ + R VR G A+ G+
Sbjct: 182 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 241
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKF 382
VY +G LG +P+ L+S K+ V F
Sbjct: 242 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 280
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPLEEVGSVVQIAAGPSY 280
+ G + T + G ++ G +G+LG G+ ++ P I+ L V SV A G S
Sbjct: 281 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV---ACGASV 337
Query: 281 MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G V+++G G+N+ LG G+ D P + + + V+ VS+G +H V L
Sbjct: 338 GYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 29/291 (9%)
Query: 99 SVEHSSDI---VETSAGNMQITTGRYHTL-LISNSSVFSCGS--SLCGVLGHGPETTQCV 152
SVE S + VE +Q++ G HT L + VF GS GV+G +
Sbjct: 85 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKK-- 142
Query: 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT--CGDNSSFCC--------GHRDTNR 202
S + VV+V++ +H + G ++T CG+ G R
Sbjct: 143 SMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 202
Query: 203 PIFRPRLVEALKG------VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR 256
+ P+ V LK V + G FT ++ GHV+ G + + QLG T
Sbjct: 203 RLLVPKCV-MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC 261
Query: 257 PTPKSIAPLEE-VGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 315
P+++ + S V + G + + + G YS G LG GE +E ++I
Sbjct: 262 FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE---KSI 318
Query: 316 QTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
T + V V+ G A+ G V+ WG G LG G + D P
Sbjct: 319 PTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 369
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 122/294 (41%), Gaps = 39/294 (13%)
Query: 105 DIVETSAGNMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 163
D+V+ AG M HT+ +S S V+S G + G LG + +
Sbjct: 60 DVVQAEAGGM-------HTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQE 111
Query: 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGV 216
VVQVSA ++H A + G+VF G SF RD N P+ + + V+ V
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDV 164
Query: 217 PCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLE 266
P +V +G + LT G ++T G GQLG L+R L+
Sbjct: 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224
Query: 267 EVGSVVQIA-----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321
GS + G + A++ G VY FG + LG P+ + +F+
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 284
Query: 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKS 374
V S G H V +DS G Y+ G+ G LG G+ +K++P +S L +
Sbjct: 285 TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 338
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 117/279 (41%), Gaps = 43/279 (15%)
Query: 131 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 242
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 87 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 243 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 138 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 298 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 343
LG G Q E L P+ + R VR G A+ G+
Sbjct: 193 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252
Query: 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKF 382
VY +G LG +P+ L+S K+ V F
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 291
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD-TLDRPTPKSIAPLEEVGSVVQIAAGPSY 280
+ G + T + G ++ G +G+LG G+ ++ P I+ L V SV A G S
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV---ACGASV 348
Query: 281 MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G V+++G G+N+ LG G+ D P + + + V+ VS+G +H V L
Sbjct: 349 GYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 29/291 (9%)
Query: 99 SVEHSSDI---VETSAGNMQITTGRYHTL-LISNSSVFSCGS--SLCGVLGHGPETTQCV 152
SVE S + VE +Q++ G HT L + VF GS GV+G +
Sbjct: 96 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKK-- 153
Query: 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT--CGDNSSFCC--------GHRDTNR 202
S + VV+V++ +H + G ++T CG+ G R
Sbjct: 154 SMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213
Query: 203 PIFRPRLVEALKG------VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR 256
+ P+ V LK V + G FT ++ GHV+ G + + QLG T
Sbjct: 214 RLLVPKCV-MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC 272
Query: 257 PTPKSIAPLEE-VGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 315
P+++ + S V + G + + + G YS G LG GE +E ++I
Sbjct: 273 FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE---KSI 329
Query: 316 QTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
T + V V+ G A+ G V+ WG G LG G + D P
Sbjct: 330 PTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP 380
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 125 LISNSSVFSCGSSLC--GVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQ 180
L SN V++ G+ C G+LG + + + T P S ++VQ++ ++H F+ +
Sbjct: 163 LFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTAGLNFTGFLTIRGH 236
G VF G+ G + R FR + ++ L+ V K + +G N LT
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMER--FRLKTLDPRPFGLRHV--KYIASGENHCFALTKDNK 277
Query: 237 VHTCGSNTHGQLGHGDTLDR----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 292
+ + G N GQ G + ++ PK +A + V + IAAG + L ++ +G +YS
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV-VIRSIAAGEHHSLILSQDGDLYS 336
Query: 293 FGSGSNFCLG----------HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342
G F +G + + H + + + T V+AG H VA+ +G
Sbjct: 337 CGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNG 396
Query: 343 YVYTWGKGYCGALGHGDEIDKT 364
Y+WG G A+G G D T
Sbjct: 397 IAYSWGFGETYAVGLGPFEDDT 418
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 42/232 (18%)
Query: 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFC---CGHRDTNRPIFRPRLVEALKGVPCK 219
+H++ H +Q +F C S C G N+ + RPRL L K
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIF-CWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 220 QVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD---------------------- 255
++ G T L +V + G N G LG DT +
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGR-DTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 256 --RPTP-----KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS--GSNFCLGHGEQ 306
TP +S PL E VVQ+AA + A+ NG VY++G+ + LG +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 307 HDELQ--PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALG 356
++Q P + TF + ++V+++ G +H++ LD G V+ WG G LG
Sbjct: 188 KIKIQKTPWKVPTFSK--YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG 237
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 114 MQITTGRYHTLLISNSS-VFSCGSSLCGVLGHG-PETTQCVSFTRINFPSAAHVVQVSAS 171
+Q+ G+ H L + VF+ G+ LG E + + F HV +++
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG 265
Query: 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFT 228
ENH + + ++ + G N CG + + +P+ + V + + AG + +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 229 GFLTIRGHVHTCGSNTHGQLG--------------HGDTLDRPTPKSIAPLEEVGSVVQI 274
L+ G +++CG ++G HG P P L V +
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---LNNVPKFKSV 382
Query: 275 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDE 333
AAG + +AV NG+ YS+G G + +G G D+ + P I+ + +++ V G +
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442
Query: 334 HVVA 337
V+
Sbjct: 443 FSVS 446
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 42/274 (15%)
Query: 114 MQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQ---------------------- 150
+ G HTL L S+V+S G + G LG +
Sbjct: 70 ISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNEL 129
Query: 151 ---CVSFTRINFPSAAH---VVQVSASENHAAFVLQSGQVFTCGD---NSSFCCGHRDTN 201
R +FP A VVQ++A++N + + +G+V+ G N ++D
Sbjct: 130 ESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI 189
Query: 202 RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261
+ P V Q+ G + FL G V G+ QLG ++R K+
Sbjct: 190 KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKT 248
Query: 262 IAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320
+ P + V IA+G ++ A+T + + S+G G ++++ A+ T +
Sbjct: 249 LDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQ---FGQCGVSEDVEDGALVTKPK 305
Query: 321 K-----GIHVVRVSAGDEHVVALDSSGYVYTWGK 349
+ + + ++AG+ H + L G +Y+ G+
Sbjct: 306 RLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 232 TIRGHVHTCGSNTHGQLGHG-DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 290
T+ G+V CG+ GQLG G D L+R K ++P+ + V I+AG + L +T +G +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 291 YSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 348
YSFG LG D E +P I + + +SAGD H L G V+ WG
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGK----ALCISAGDSHSACLLEDGRVFAWG 152
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 116 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETT----------QCVSFTRINFPSAAH 164
I +G H ++++ + VF+ G + G LG E + + T++ A
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 165 VVQVSASENHAAFVLQSGQ--VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT 222
+ A+ N+ F+ +S ++ G N+ H + + LK + + +
Sbjct: 244 FEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI--RHIA 300
Query: 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 281
G + T LT G +G+LG GD D P + L E +V + G
Sbjct: 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE--KIVSVGCGEVCS 358
Query: 282 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 338
AVT +G +YS+GSG N LG G+ DEL+P + + +G H++ S G +H + L
Sbjct: 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 23/281 (8%)
Query: 101 EHSSDIVETSAGNMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF 159
E D+++ + I+ G H+ L+ + VF+ GS G+ T T I+
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS-FRDSHGNMGLTIDGNKRTPIDL 175
Query: 160 PSAAHVVQVSASENHAAFVLQSGQVFTCG----------DNSSFCCGHRDTNRPIFRPRL 209
+++ +H + +G+VFT G S R R + RP
Sbjct: 176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ 235
Query: 210 VEALKGVPCKQVTAGLNFTGFL--TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE- 266
+ + P + + A N+ F+ + + G N QL H + ++ P++
Sbjct: 236 LIITRAKPFEAIWA-TNYCTFMRESQTQVIWATGLNNFKQLAH---ETKGKEFALTPIKT 291
Query: 267 EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHV 325
E+ + IA G + + +T + G LG G+ D ++ P ++ K +
Sbjct: 292 ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEK---I 348
Query: 326 VRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366
V V G+ A+ G +Y+WG G LG GD D+ P
Sbjct: 349 VSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 25/229 (10%)
Query: 130 SVFSCGSSLCGVLGHGPETTQCVSFTRI-NFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188
+V CG+ G LG G + + + + P A V +SA H + +SG +++ G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDA---VDISAGGMHNLVLTKSGDIYSFG 100
Query: 189 DNSSFCCGHRDTNRP--IFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NT 244
N G RDT+ +P L++ C ++AG + + L G V GS ++
Sbjct: 101 CNDEGALG-RDTSEDGSESKPDLIDLPGKALC--ISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHG 304
HG +G ++ TP L E IA+G +++ +T G V++ G LG
Sbjct: 158 HGNMGLTIDGNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR- 213
Query: 305 EQHDELQPRAIQTFRRKGIH-VVRVSAGDEHVVALDSSGYVYTWGKGYC 352
L R+I R+G ++R + ++ + + W YC
Sbjct: 214 -----LSERSISGEGRRGKRDLLRPT----QLIITRAKPFEAIWATNYC 253
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVP-CKQVTAGLNFTGFLTIRGHVHTC 240
G V CG+ G I + + + G+P ++AG LT G +++
Sbjct: 43 GNVLVCGNGD---VGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300
G N G LG DT + + ++ G + I+AG S+ + +G V+++GS F
Sbjct: 100 GCNDEGALGR-DTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS---FR 155
Query: 301 LGHGEQHDELQPRAIQTFRRKGIHVVR------VSAGDEHVVALDSSGYVYTWGKGYCGA 354
HG I +R I ++ +++G +H+V L ++G V+T G G
Sbjct: 156 DSHGNMG-----LTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQ 210
Query: 355 LGH 357
LG
Sbjct: 211 LGR 213
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 284 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI-HVVRVSAGDEHVVALDSSG 342
V GNG V G G + + L P A GI V +SAG H + L SG
Sbjct: 47 VCGNGDVGQLGLGEDIL-----ERKRLSPVA-------GIPDAVDISAGGMHNLVLTKSG 94
Query: 343 YVYTWGKGYCGALGHGDEIDKTLPEP 368
+Y++G GALG D + +P
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKP 120
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 63 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 107
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 108 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 162
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 163 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 222
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 223 VSAIASGEWYSLALK-NGKVIAWGS 246
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQ 167
T +G I G YH+L + + V + G + G + P+ A V
Sbjct: 61 TQSGVDAIAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVD 105
Query: 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ-- 220
A+ A++ L+ G+V GD+S T P V AL G + K
Sbjct: 106 AIAAGAWASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGG 160
Query: 221 -VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGS 270
+ G N+ G T+ + + G + H L D ++ P E +
Sbjct: 161 VIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSG 220
Query: 271 VVQIAAGPSYMLAVTGNGVVYSFGS 295
V IA+G Y LA+ NG V ++GS
Sbjct: 221 VSAIASGEWYSLALK-NGKVIAWGS 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,717,675
Number of Sequences: 62578
Number of extensions: 479773
Number of successful extensions: 1431
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 68
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)