Query 016480
Match_columns 389
No_of_seqs 470 out of 2046
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 3.6E-45 7.9E-50 339.2 24.3 314 68-389 112-461 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 4.5E-45 9.8E-50 338.6 24.1 307 76-389 64-406 (476)
3 KOG1427 Uncharacterized conser 100.0 1.9E-42 4.2E-47 301.9 14.2 268 112-388 57-341 (443)
4 KOG1427 Uncharacterized conser 100.0 1.4E-40 3E-45 290.3 14.1 303 76-388 73-394 (443)
5 KOG0783 Uncharacterized conser 99.9 2E-26 4.2E-31 224.4 14.3 271 74-351 136-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.5E-26 3.2E-31 225.3 11.4 218 127-351 140-363 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.7E-24 3.6E-29 218.3 22.6 257 110-388 524-890 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 6E-22 1.3E-26 200.2 16.4 256 47-318 562-871 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 6.2E-13 1.3E-17 89.6 4.9 49 341-389 1-50 (51)
10 PF00415 RCC1: Regulator of ch 99.3 2.4E-12 5.2E-17 86.7 5.6 51 181-231 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.2 6.5E-14 1.4E-18 138.9 -8.3 146 159-353 10-156 (850)
12 PF13540 RCC1_2: Regulator of 99.2 1.9E-11 4E-16 71.9 4.7 30 325-354 1-30 (30)
13 PF13540 RCC1_2: Regulator of 99.2 2.8E-11 6E-16 71.2 4.6 30 271-300 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 99.1 4.4E-13 9.5E-18 133.1 -8.4 134 207-388 5-138 (850)
15 PF12937 F-box-like: F-box-lik 97.3 9.2E-05 2E-09 48.4 1.1 34 10-45 1-34 (47)
16 PF00646 F-box: F-box domain; 95.9 0.0016 3.6E-08 42.5 -0.6 34 9-44 2-35 (48)
17 smart00256 FBOX A Receptor for 94.8 0.0083 1.8E-07 37.4 0.1 31 13-45 1-31 (41)
18 KOG3669 Uncharacterized conser 94.0 0.97 2.1E-05 44.7 12.1 108 223-347 190-299 (705)
19 KOG3669 Uncharacterized conser 93.9 3.4 7.4E-05 41.1 15.6 107 118-240 190-299 (705)
20 KOG0943 Predicted ubiquitin-pr 89.5 0.025 5.4E-07 59.8 -4.5 131 164-300 375-509 (3015)
21 PF11725 AvrE: Pathogenicity f 89.3 2.2 4.8E-05 47.6 9.6 113 211-342 698-815 (1774)
22 KOG0315 G-protein beta subunit 89.1 16 0.00035 32.7 15.2 105 218-349 88-196 (311)
23 KOG0943 Predicted ubiquitin-pr 88.6 0.025 5.4E-07 59.7 -5.1 132 112-247 375-509 (3015)
24 PF13013 F-box-like_2: F-box-l 86.7 0.2 4.3E-06 38.9 -0.0 32 9-42 21-52 (109)
25 KOG0646 WD40 repeat protein [G 84.9 25 0.00054 34.2 12.8 140 74-240 97-244 (476)
26 KOG2997 F-box protein FBX9 [Ge 83.1 0.4 8.7E-06 44.0 0.2 54 8-63 105-161 (366)
27 PHA03098 kelch-like protein; P 82.9 56 0.0012 33.0 16.6 24 6-29 142-165 (534)
28 PLN03215 ascorbic acid mannose 82.8 14 0.0003 35.5 10.3 62 164-241 161-225 (373)
29 KOG0315 G-protein beta subunit 82.5 37 0.0008 30.6 15.8 63 223-297 134-198 (311)
30 PF07569 Hira: TUP1-like enhan 81.0 13 0.00027 33.0 9.0 29 269-297 13-41 (219)
31 PF11725 AvrE: Pathogenicity f 78.3 5.7 0.00012 44.6 6.8 71 263-348 698-770 (1774)
32 KOG0646 WD40 repeat protein [G 78.0 72 0.0016 31.2 16.9 150 113-293 84-244 (476)
33 PF07569 Hira: TUP1-like enhan 77.8 16 0.00036 32.3 8.7 29 215-243 12-40 (219)
34 PHA02713 hypothetical protein; 77.3 70 0.0015 32.7 14.2 20 171-190 341-360 (557)
35 smart00706 TECPR Beta propelle 73.5 6.9 0.00015 23.2 3.6 24 269-292 8-32 (35)
36 smart00706 TECPR Beta propelle 71.5 8.2 0.00018 22.9 3.6 24 324-347 9-33 (35)
37 KOG0291 WD40-repeat-containing 71.4 1.4E+02 0.003 31.4 20.7 122 164-298 299-424 (893)
38 KOG1900 Nuclear pore complex, 69.5 1.9E+02 0.0042 32.3 16.5 204 125-349 94-339 (1311)
39 PRK05560 DNA gyrase subunit A; 69.2 1.7E+02 0.0037 31.5 17.0 164 169-347 545-718 (805)
40 PLN02153 epithiospecifier prot 68.5 1.1E+02 0.0023 28.9 18.7 16 122-137 79-94 (341)
41 PF04762 IKI3: IKI3 family; I 67.1 1.5E+02 0.0033 32.5 14.4 28 163-190 427-456 (928)
42 KOG1240 Protein kinase contain 65.2 2.3E+02 0.0051 31.6 18.5 123 109-243 1047-1181(1431)
43 TIGR01063 gyrA DNA gyrase, A s 63.1 2.2E+02 0.0048 30.6 17.7 164 169-347 543-715 (800)
44 KOG4441 Proteins containing BT 62.1 1.2E+02 0.0027 31.1 12.1 57 283-349 471-530 (571)
45 KOG0649 WD40 repeat protein [G 61.4 79 0.0017 28.4 8.9 46 269-315 63-109 (325)
46 KOG1240 Protein kinase contain 56.4 2.5E+02 0.0055 31.4 13.2 123 164-297 1050-1182(1431)
47 PF04841 Vps16_N: Vps16, N-ter 53.9 2.2E+02 0.0048 27.8 15.9 74 157-240 76-152 (410)
48 KOG1900 Nuclear pore complex, 53.4 2E+02 0.0043 32.3 12.0 78 215-295 242-339 (1311)
49 PRK14131 N-acetylneuraminic ac 53.2 1.6E+02 0.0035 28.3 10.8 17 121-137 131-148 (376)
50 PF12341 DUF3639: Protein of u 51.2 42 0.00091 18.9 3.7 24 216-239 2-25 (27)
51 PF02239 Cytochrom_D1: Cytochr 50.3 2.4E+02 0.0052 27.1 15.6 112 113-240 29-155 (369)
52 PHA03098 kelch-like protein; P 48.0 3.1E+02 0.0067 27.7 14.1 18 121-138 335-352 (534)
53 KOG1034 Transcriptional repres 46.7 45 0.00098 31.2 5.3 57 177-242 324-382 (385)
54 PF06739 SBBP: Beta-propeller 46.3 24 0.00053 21.5 2.5 18 333-350 15-32 (38)
55 KOG0274 Cdc4 and related F-box 46.2 3.4E+02 0.0074 27.7 19.3 140 171-351 260-401 (537)
56 PHA02713 hypothetical protein; 45.5 1.5E+02 0.0032 30.4 9.6 19 119-137 341-360 (557)
57 COG4257 Vgb Streptogramin lyas 44.5 1.5E+02 0.0032 27.4 8.1 109 224-357 62-175 (353)
58 TIGR03547 muta_rot_YjhT mutatr 44.2 1.7E+02 0.0036 27.6 9.3 17 121-137 110-127 (346)
59 PF02239 Cytochrom_D1: Cytochr 43.0 3.1E+02 0.0068 26.3 14.1 118 163-294 27-156 (369)
60 TIGR03548 mutarot_permut cycli 42.2 2.5E+02 0.0053 26.2 10.0 18 121-138 116-133 (323)
61 PLN02153 epithiospecifier prot 41.4 3.1E+02 0.0066 25.8 15.5 18 121-138 130-147 (341)
62 PRK14131 N-acetylneuraminic ac 40.7 3.4E+02 0.0073 26.0 15.6 18 173-190 131-148 (376)
63 KOG0278 Serine/threonine kinas 40.6 2.8E+02 0.0061 25.2 9.7 41 203-243 132-173 (334)
64 PF04841 Vps16_N: Vps16, N-ter 40.2 3.6E+02 0.0079 26.3 19.9 68 269-349 217-286 (410)
65 KOG4441 Proteins containing BT 39.0 1.6E+02 0.0034 30.3 8.6 60 230-295 471-530 (571)
66 PF07250 Glyoxal_oxid_N: Glyox 38.9 1.4E+02 0.0031 26.8 7.3 75 115-191 113-190 (243)
67 KOG1274 WD40 repeat protein [G 37.9 5.5E+02 0.012 27.7 14.4 68 170-240 13-81 (933)
68 TIGR02658 TTQ_MADH_Hv methylam 35.2 4.1E+02 0.0089 25.4 19.4 74 113-190 40-125 (352)
69 PHA02790 Kelch-like protein; P 33.9 3.3E+02 0.0072 27.2 9.9 15 176-190 357-371 (480)
70 PF03785 Peptidase_C25_C: Pept 33.5 67 0.0015 23.4 3.4 32 270-301 17-49 (81)
71 PF03785 Peptidase_C25_C: Pept 33.5 1.2E+02 0.0026 22.1 4.8 40 103-142 8-49 (81)
72 PF09372 PRANC: PRANC domain; 32.3 23 0.00049 26.7 1.0 26 8-35 70-95 (97)
73 PF13418 Kelch_4: Galactose ox 32.3 45 0.00099 21.1 2.3 17 332-348 3-19 (49)
74 TIGR03300 assembly_YfgL outer 32.0 4.5E+02 0.0097 24.9 12.5 15 279-293 362-376 (377)
75 PRK13979 DNA topoisomerase IV 30.3 7.8E+02 0.017 27.2 17.5 130 164-303 553-696 (957)
76 PRK05560 DNA gyrase subunit A; 29.6 7.5E+02 0.016 26.7 22.6 213 121-352 549-774 (805)
77 PLN03215 ascorbic acid mannose 28.6 2.4E+02 0.0053 27.2 7.4 58 115-188 164-225 (373)
78 PF07646 Kelch_2: Kelch motif; 28.4 66 0.0014 20.4 2.6 17 121-137 4-20 (49)
79 TIGR03300 assembly_YfgL outer 27.6 5.3E+02 0.012 24.4 12.8 57 278-347 320-376 (377)
80 PF06881 Elongin_A: RNA polyme 27.0 37 0.00079 26.3 1.4 32 9-42 3-34 (109)
81 KOG2120 SCF ubiquitin ligase, 24.4 27 0.00058 32.5 0.2 45 10-58 98-142 (419)
82 KOG0293 WD40 repeat-containing 24.2 6.9E+02 0.015 24.5 11.3 72 269-351 396-471 (519)
83 cd00200 WD40 WD40 domain, foun 23.8 4.6E+02 0.0099 22.3 24.7 66 112-190 95-165 (289)
84 TIGR01063 gyrA DNA gyrase, A s 23.7 9.5E+02 0.021 26.0 22.7 211 121-351 547-770 (800)
85 PF13938 DUF4213: Domain of un 23.4 95 0.0021 22.8 3.0 23 213-235 9-31 (87)
86 PF08450 SGL: SMP-30/Gluconola 22.8 5.2E+02 0.011 22.6 10.3 17 279-295 186-202 (246)
87 TIGR01062 parC_Gneg DNA topois 22.8 9.5E+02 0.021 25.7 15.0 152 175-347 497-651 (735)
88 PRK13979 DNA topoisomerase IV 22.2 1.1E+03 0.024 26.1 20.4 128 112-249 553-695 (957)
89 KOG2444 WD40 repeat protein [G 22.0 1.8E+02 0.004 25.9 4.8 67 115-192 64-134 (238)
90 PF01436 NHL: NHL repeat; Int 21.8 1.6E+02 0.0034 16.3 3.2 17 174-190 5-21 (28)
91 KOG0289 mRNA splicing factor [ 21.7 7.8E+02 0.017 24.3 9.2 67 279-349 350-418 (506)
92 KOG0291 WD40-repeat-containing 21.3 1E+03 0.022 25.4 20.7 121 113-246 300-425 (893)
93 PF04762 IKI3: IKI3 family; I 21.3 1.1E+03 0.024 25.9 20.1 47 280-350 593-639 (928)
94 KOG1408 WD40 repeat protein [F 21.3 5.7E+02 0.012 27.0 8.6 30 213-242 215-248 (1080)
95 PF13964 Kelch_6: Kelch motif 20.9 1E+02 0.0022 19.6 2.4 19 121-139 4-22 (50)
96 PHA02790 Kelch-like protein; P 20.8 6.5E+02 0.014 25.1 9.3 12 126-137 360-371 (480)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.6e-45 Score=339.22 Aligned_cols=314 Identities=25% Similarity=0.369 Sum_probs=253.5
Q ss_pred cceeeccCccccceeeeeecCCccccceee----------------cccccccceeec------CCCcEEEEecCCeeEE
Q 016480 68 HSIYAGMSRNVQIELLNRCNGNWKRVLRFL----------------QSVEHSSDIVET------SAGNMQITTGRYHTLL 125 (389)
Q Consensus 68 ~~~~~~~~~~~~g~l~~~g~~~~~~~~~~~----------------~~~~~~p~~v~~------~~~i~~i~~G~~h~~~ 125 (389)
+..++ .+...+|.||.||.|..|.+++.. ......|..++. ..++++++||..++++
T Consensus 112 Gg~hs-l~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svi 190 (476)
T COG5184 112 GGNHS-LGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVI 190 (476)
T ss_pred CCceE-EeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEE
Confidence 33445 677888999999998888888666 124567777777 4579999999999999
Q ss_pred E-ECCeEEEEecCCCCccCCCCCCce---eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCC
Q 016480 126 I-SNSSVFSCGSSLCGVLGHGPETTQ---CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN 201 (389)
Q Consensus 126 l-~~g~vy~wG~n~~gqlG~~~~~~~---~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 201 (389)
+ ++|+||+||.+..+.++.+..... ...++|+..+ ...|+++++|.+|.++|+++|++|+||+|..||||.....
T Consensus 191 l~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e 269 (476)
T COG5184 191 LTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSE 269 (476)
T ss_pred EccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhh
Confidence 9 999999999998888887743332 2346666666 4589999999999999999999999999999999998774
Q ss_pred CceecCEEeccc-CCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC----CCCCeeecCCCCCCCEEEEEe
Q 016480 202 RPIFRPRLVEAL-KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAA 276 (389)
Q Consensus 202 ~~~~~p~~v~~~-~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~i~~I~~ 276 (389)
+ ...+..+..+ .-..|+.|+||.+|++||+++|+||+||.|.+||||.++... ...|+....+.. ..|..|++
T Consensus 270 ~-~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~-~~i~~is~ 347 (476)
T COG5184 270 R-LKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG-VTICSISA 347 (476)
T ss_pred h-cccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC-ceEEEEec
Confidence 3 2222233222 222378999999999999999999999999999999983221 234444444433 46999999
Q ss_pred cCceEEEEECCCcEEEEeCCCCCccCCCC--CCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCC
Q 016480 277 GPSYMLAVTGNGVVYSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA 354 (389)
Q Consensus 277 G~~h~~~lt~~G~vy~wG~n~~gqLG~g~--~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~Gq 354 (389)
|..|+++|..+|.||+||+++.+|||... ......|.++... .++.+|+||..|+++.+.+|.||+||+|++|+
T Consensus 348 ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~----~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gn 423 (476)
T COG5184 348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA----IKLEQVACGTHHNIARTDDGSVYSWGWGEHGN 423 (476)
T ss_pred CcceEEEEecCceEEEecCCccccccCcccceeecCCccccccc----cceEEEEecCccceeeccCCceEEecCchhhh
Confidence 99999999999999999999999999988 5555666666543 26999999999999999999999999999999
Q ss_pred CCCCCC-CCeecceEecC--CCCCcEEEEEEecCeeeC
Q 016480 355 LGHGDE-IDKTLPEPLSS--LKSHLAVQVKFIRNFYYS 389 (389)
Q Consensus 355 LG~g~~-~~~~~P~~v~~--~~~~~i~~i~~G~~~s~~ 389 (389)
||.|+. +....|+.+.. +....++..-||.+++.+
T Consensus 424 lG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~ 461 (476)
T COG5184 424 LGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVI 461 (476)
T ss_pred ccCCchhhhccccccccccccCCCceEEeccCcceEEE
Confidence 999985 56778888875 677889999999988864
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.5e-45 Score=338.59 Aligned_cols=307 Identities=21% Similarity=0.252 Sum_probs=239.3
Q ss_pred ccccceeeeeecCCccccceeecc-cccccceeecC----CCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCC--
Q 016480 76 RNVQIELLNRCNGNWKRVLRFLQS-VEHSSDIVETS----AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPE-- 147 (389)
Q Consensus 76 ~~~~g~l~~~g~~~~~~~~~~~~~-~~~~p~~v~~~----~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~-- 147 (389)
+.....+|+||.+...+++-.-.. ....|.+.+.. ..|++++||..|+++| +||+||+||.|..|+||....
T Consensus 64 ~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~ 143 (476)
T COG5184 64 LVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKD 143 (476)
T ss_pred hhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccc
Confidence 344566777777666665533222 22345555544 4699999999999999 999999999999999998772
Q ss_pred -------------CceeeeeeeecCCC----CCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCC-----cee
Q 016480 148 -------------TTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR-----PIF 205 (389)
Q Consensus 148 -------------~~~~~~p~~i~~~~----~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-----~~~ 205 (389)
......|..++... ..+|++++||++++++|+++|+||+||....+.++.+.... ..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~ 223 (476)
T COG5184 144 ICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQF 223 (476)
T ss_pred cccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeee
Confidence 11223455555522 23899999999999999999999999999988888874431 223
Q ss_pred cCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEE
Q 016480 206 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 285 (389)
Q Consensus 206 ~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt 285 (389)
.|..+. ...|+++++|.+|.++|+++|++|+||+|..||||....+....+..+..+.....|..|+||.+|++||+
T Consensus 224 ~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~ 300 (476)
T COG5184 224 TPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALD 300 (476)
T ss_pred eeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEc
Confidence 444443 45799999999999999999999999999999999998888777777776655567899999999999999
Q ss_pred CCCcEEEEeCCCCCccCCCCCC----CccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCC--
Q 016480 286 GNGVVYSFGSGSNFCLGHGEQH----DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD-- 359 (389)
Q Consensus 286 ~~G~vy~wG~n~~gqLG~g~~~----~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~-- 359 (389)
++|++|+||.|.+||||.+... ....|.....+ .+..|..|++|..|+++|..+|.||+||++..||||..+
T Consensus 301 ~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~ 378 (476)
T COG5184 301 EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEI 378 (476)
T ss_pred CCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccc
Confidence 9999999999999999998221 11233333333 344689999999999999999999999999999999988
Q ss_pred CCCeecceEecCCCCCcEEEEEEecCeeeC
Q 016480 360 EIDKTLPEPLSSLKSHLAVQVKFIRNFYYS 389 (389)
Q Consensus 360 ~~~~~~P~~v~~~~~~~i~~i~~G~~~s~~ 389 (389)
......|+++... .++.+|+||..|+|+
T Consensus 379 ~~~~~~~~~ls~~--~~~~~v~~gt~~~~~ 406 (476)
T COG5184 379 TIDVSTPTKLSVA--IKLEQVACGTHHNIA 406 (476)
T ss_pred eeecCCccccccc--cceEEEEecCcccee
Confidence 4555666666433 469999999999874
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=301.87 Aligned_cols=268 Identities=28% Similarity=0.389 Sum_probs=234.6
Q ss_pred CcEEEEecC--CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEe
Q 016480 112 GNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (389)
Q Consensus 112 ~i~~i~~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (389)
+|.-|++|. .|+++| -+|+.|+||.|..||||+++... ...|+.|+-....+|++.+||++|+++||++|+||+||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~-~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ-RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhh-ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEec
Confidence 477787764 799999 99999999999999999996554 55677777666679999999999999999999999999
Q ss_pred CCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC-------------
Q 016480 189 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD------------- 255 (389)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~------------- 255 (389)
.|.+||||.++....+..|.++.. .+.+|+.|+||..+++.|+..+.+.++|.-.|||||+++...
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred ccccccccccccccccccCCCccc-cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 999999999998766666554433 345799999999999999999999999999999999986542
Q ss_pred -CCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCe
Q 016480 256 -RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH 334 (389)
Q Consensus 256 -~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~h 334 (389)
++.|..|..+.. ..|++++||.+|++|++++++||+||.+.+|+||+..+.+...|++|..+...+.--.++.||+..
T Consensus 215 ~~pr~~~i~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 215 AQPRPKAIASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred cCCCccccccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 356667777766 689999999999999999999999999999999999999999999999998888888999999999
Q ss_pred EEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCeee
Q 016480 335 VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 335 s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
++++.+-|.+|.||.+.. +.+....|.++..+.+.++..+-||+.|.|
T Consensus 294 Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~ 341 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF 341 (443)
T ss_pred ceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee
Confidence 999999999999998762 345677899999999999999999987764
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=290.27 Aligned_cols=303 Identities=19% Similarity=0.263 Sum_probs=253.5
Q ss_pred ccccceeeeeecCCccccceeecccccccceeecCCC--cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceee
Q 016480 76 RNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG--NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCV 152 (389)
Q Consensus 76 ~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~--i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~ 152 (389)
.+..|++|.||.|..+|++.........|.+++.+.+ |++.+||++|+++| ++|+||+||.|.+||||+++......
T Consensus 73 i~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~ 152 (443)
T KOG1427|consen 73 IDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVE 152 (443)
T ss_pred EecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccc
Confidence 4567777778877777887776666667899988876 99999999999999 99999999999999999999877655
Q ss_pred eeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCC-------------CceecCEEecccCCcceE
Q 016480 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN-------------RPIFRPRLVEALKGVPCK 219 (389)
Q Consensus 153 ~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-------------~~~~~p~~v~~~~~~~i~ 219 (389)
.++++.+.. ..|+.|+||.++++.|+..+.+.++|.-.|||||++... +..+.|..|..+.+..|+
T Consensus 153 s~~~~~~~~-~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv 231 (443)
T KOG1427|consen 153 STPLPCVVS-DEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIV 231 (443)
T ss_pred cCCCccccC-ccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeE
Confidence 555544433 379999999999999999999999999999999998765 234456677788899999
Q ss_pred EEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCC-CCEEEEEecCceEEEEECCCcEEEEeCCCC
Q 016480 220 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 298 (389)
Q Consensus 220 ~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 298 (389)
+++||.+|+++++++++||+||.+.||+||+....+...|++++.++.. .--.++.||+..++.+.+-|.+|.||.+..
T Consensus 232 ~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~ 311 (443)
T KOG1427|consen 232 KVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN 311 (443)
T ss_pred EEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc
Confidence 9999999999999999999999999999999999999999999877543 235678899999999999999999999874
Q ss_pred CccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCC--CCCeecceEecCCCCCc
Q 016480 299 FCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD--EIDKTLPEPLSSLKSHL 376 (389)
Q Consensus 299 gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~P~~v~~~~~~~ 376 (389)
+-.+...|.++..+ .+.++..+.|+..|.++- .|-...+||...+|.++-|. ......|++|..+++.+
T Consensus 312 ------~ge~~mypkP~~dl--sgwnl~~~~~~~~h~~v~-ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~ 382 (443)
T KOG1427|consen 312 ------NGEDWMYPKPMMDL--SGWNLRWMDSGSMHHFVG-ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIH 382 (443)
T ss_pred ------CcccccCCCchhhc--CCccCCCcCccceeeeec-ccccccccccccccccccCccccccccCccccchhccee
Confidence 22344567777666 556789999999987765 45579999998887765544 35667899999999999
Q ss_pred EEEEEEecCeee
Q 016480 377 AVQVKFIRNFYY 388 (389)
Q Consensus 377 i~~i~~G~~~s~ 388 (389)
|.+|+||-.||.
T Consensus 383 v~~VamGysHs~ 394 (443)
T KOG1427|consen 383 VMGVAMGYSHSM 394 (443)
T ss_pred ccceeeccceEE
Confidence 999999999984
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=2e-26 Score=224.41 Aligned_cols=271 Identities=21% Similarity=0.273 Sum_probs=209.8
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeecCCC----cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCC
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET 148 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~----i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~ 148 (389)
+......+||.||.|..-.++.+...-...|..|...++ +.||+.+.+|++++ +.|+||++|-+..|.||.++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 445567889999998888888777777778888776665 89999999999999 9999999999999999999555
Q ss_pred ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEeccc--CCc-ceEEEEccC
Q 016480 149 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGV-PCKQVTAGL 225 (389)
Q Consensus 149 ~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~-~i~~i~~G~ 225 (389)
. ...|++++.....+|.+|++...|+++||++|.||+||.|.++|||..+.......|.+|... ++. .|+.|++|.
T Consensus 216 ~-~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 216 Y-NFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred c-cccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 4 455666777666799999999999999999999999999999999998887666677776543 333 689999999
Q ss_pred ceEEEEeeCCcEEEeeCCCCccccCCCCCC-CCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCC
Q 016480 226 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHG 304 (389)
Q Consensus 226 ~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g 304 (389)
.|+++.++ -.||+||.| .||||..+... ..+|+.+.... ..|..|+|....++++++++.+|++-+-..-.+ .
T Consensus 295 ~hsVawt~-~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~~--~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~ 368 (1267)
T KOG0783|consen 295 SHSVAWTD-TDVYSWGLN-NGQLGISDNISVVTTPRRLAGLL--SPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--P 368 (1267)
T ss_pred ceeeeeec-ceEEEeccc-CceecCCCCCceeecchhhcccc--cceEEEEecCccEEEEecCCcEEEEecccceec--C
Confidence 99999995 479999998 59999877644 46786664443 589999999999999999999999875332111 1
Q ss_pred CCCCccccEEeec--cccCCccEEEEEecCCeEEEEecCCcEEEEeCCC
Q 016480 305 EQHDELQPRAIQT--FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 305 ~~~~~~~P~~i~~--~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 351 (389)
.......-..|.. +......+.+..+....-++||+-|+||.|=.+.
T Consensus 369 ~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 369 FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 1111111122221 1111124666677778889999999999998653
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=225.29 Aligned_cols=218 Identities=25% Similarity=0.314 Sum_probs=184.8
Q ss_pred ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCC--CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 016480 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (389)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (389)
.-..||+||.|.+..||.++... ...|..+.++... -+.+|+.+..|++++++.|+||++|.+.-|.||.++. ...
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde-q~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE-QYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc-ccc
Confidence 66889999999999999998776 4578888776544 5788999999999999999999999999999999965 678
Q ss_pred ecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC-CCCCeeecCC--CCCCCEEEEEecCceE
Q 016480 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPL--EEVGSVVQIAAGPSYM 281 (389)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~-~~~p~~v~~~--~~~~~i~~I~~G~~h~ 281 (389)
+.|++|+.+.+.+|.+|++...|+++||++|.||+||.|..+|||..+... ...|.+|... .+...|+.|+||..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 899999999999999999999999999999999999999999999876644 3455555432 2225799999999999
Q ss_pred EEEECCCcEEEEeCCCCCccCCCCCCC-ccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCC
Q 016480 282 LAVTGNGVVYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 282 ~~lt~~G~vy~wG~n~~gqLG~g~~~~-~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 351 (389)
++.|+. .||+||.|. ||||..+... ...|+.+.. ....|..|+|-..-|+++++++.+|++-+-.
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~ 363 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYN 363 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEeccc
Confidence 999977 699999985 9999876644 347765533 4457999999999999999999999998643
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-24 Score=218.32 Aligned_cols=257 Identities=20% Similarity=0.266 Sum_probs=187.5
Q ss_pred CCCcEEEEecCCeeEEE---ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEE
Q 016480 110 SAGNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 186 (389)
Q Consensus 110 ~~~i~~i~~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~ 186 (389)
..+|++|+.|-....++ .+|.++.-|..... | ..++..-....+|+.+.+...---+++++|++|.
T Consensus 524 ~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~--~---------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM 592 (3738)
T KOG1428|consen 524 PEPIVQISVGIDTIMFRSGAGHGWIASVDDKKRN--G---------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFM 592 (3738)
T ss_pred CCceEEEEeccchhheeeccCcceEEeccCcccc--c---------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEe
Confidence 45799999998776666 77888877643211 1 1111111122378887554444456899999999
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCC------------
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL------------ 254 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~------------ 254 (389)
.|.... ........+..+++..|.+++.|..|.++++.+|+||+||.|+.+|+|.-...
T Consensus 593 ~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~ 663 (3738)
T KOG1428|consen 593 GGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQ 663 (3738)
T ss_pred ecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccce
Confidence 986541 11122345667888899999999999999999999999999999999931100
Q ss_pred ------------------------------------------------------------------C-------------
Q 016480 255 ------------------------------------------------------------------D------------- 255 (389)
Q Consensus 255 ------------------------------------------------------------------~------------- 255 (389)
.
T Consensus 664 e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~ 743 (3738)
T KOG1428|consen 664 EYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFS 743 (3738)
T ss_pred eecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheec
Confidence 0
Q ss_pred --------CCCCeeecCC--CCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccE
Q 016480 256 --------RPTPKSIAPL--EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (389)
Q Consensus 256 --------~~~p~~v~~~--~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v 325 (389)
...|..+..- +...++.+|+||.+|+++|.++++||++|+|-+||||+|+......|+++..+ .+..+
T Consensus 744 staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~--~~t~~ 821 (3738)
T KOG1428|consen 744 STAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILP--SDTVI 821 (3738)
T ss_pred ccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcC--CCCce
Confidence 0011111111 11247999999999999999999999999999999999999999999999877 45579
Q ss_pred EEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCC---CCeecceEecCCC---CCcEEEEEEecCeee
Q 016480 326 VRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE---IDKTLPEPLSSLK---SHLAVQVKFIRNFYY 388 (389)
Q Consensus 326 ~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~~~~---~~~i~~i~~G~~~s~ 388 (389)
++|++|.+|++++..||.||++|.-..|||+..-- --...|.+++++. +.+...|.+-.+.||
T Consensus 822 vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~ 890 (3738)
T KOG1428|consen 822 VQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSI 890 (3738)
T ss_pred EEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcce
Confidence 99999999999999999999999999999998542 2345688887764 445556655444443
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=6e-22 Score=200.18 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=177.4
Q ss_pred CCCChhccchhhHHHHHHhhccceeeccCccccceeeeeecCCccccceeecccccccceeecCCC--cEEEEecCCeeE
Q 016480 47 GLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG--NMQITTGRYHTL 124 (389)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~--i~~i~~G~~h~~ 124 (389)
.+.|++.++++. +|+.+.+|. -..++|++|-.|-.. + .+..+..++..+.+ |.+++.|..|.+
T Consensus 562 r~~P~n~rKIv~-----v~~s~~VY~--~vSenGkifM~G~~t---m-----~~n~SSqmln~L~~~~isslAlGKsH~~ 626 (3738)
T KOG1428|consen 562 RLVPSNRRKIVH-----VCASGHVYG--YVSENGKIFMGGLHT---M-----RVNVSSQMLNGLDNVMISSLALGKSHGV 626 (3738)
T ss_pred hcCCCCcceeEE-----EeeeeEEEE--EEccCCeEEeeccee---E-----EecchHHHhhccccceeehhhcccccee
Confidence 356677777765 788888886 345678888755431 1 23334456666666 889999999999
Q ss_pred EE-ECCeEEEEecCCCCccCCCCCCceeeeeee-----ecC-CC-------CCCEEEEEcCCCe----eEE--EEcCCcE
Q 016480 125 LI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTR-----INF-PS-------AAHVVQVSASENH----AAF--VLQSGQV 184 (389)
Q Consensus 125 ~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~-----i~~-~~-------~~~i~~i~~G~~h----~~~--lt~~G~v 184 (389)
++ .+|+||+||-|..+|+|+-........|.. ..+ |. ...-+-..||.-. ++. -.-.|.+
T Consensus 627 av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~m 706 (3738)
T KOG1428|consen 627 AVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTM 706 (3738)
T ss_pred EEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcc
Confidence 99 999999999999999997544332222211 000 10 0111112222111 111 1225677
Q ss_pred EEEeCCCCCcccCC--------CCC------------------CceecCEEecc---cCCcceEEEEccCceEEEEeeCC
Q 016480 185 FTCGDNSSFCCGHR--------DTN------------------RPIFRPRLVEA---LKGVPCKQVTAGLNFTGFLTIRG 235 (389)
Q Consensus 185 y~wG~n~~gqlG~~--------~~~------------------~~~~~p~~v~~---~~~~~i~~i~~G~~hs~~lt~~G 235 (389)
..+|..+.+.+-.+ ... +....|..|.. ..+.++.+|+||.+|+++|.+|+
T Consensus 707 C~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~ 786 (3738)
T KOG1428|consen 707 CHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDR 786 (3738)
T ss_pred cccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCC
Confidence 77777766554211 100 12233433332 23568999999999999999999
Q ss_pred cEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCC---cccc
Q 016480 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD---ELQP 312 (389)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~---~~~P 312 (389)
+||++|.|.+||||.|++.....|+++..+.+ ..|++|++|.+|++++..||.||++|.-..|||+...-.. ...|
T Consensus 787 ~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~-t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~P 865 (3738)
T KOG1428|consen 787 RVFTFGSNCHGQLGVGDTLSKNTPQQVILPSD-TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIP 865 (3738)
T ss_pred cEEEecCCcccccCcCccccCCCcceEEcCCC-CceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCC
Confidence 99999999999999999999999999988876 5899999999999999999999999999999999864322 1267
Q ss_pred EEeecc
Q 016480 313 RAIQTF 318 (389)
Q Consensus 313 ~~i~~~ 318 (389)
.+++.+
T Consensus 866 e~v~~~ 871 (3738)
T KOG1428|consen 866 EKVSGF 871 (3738)
T ss_pred CcCCCC
Confidence 777665
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.38 E-value=6.2e-13 Score=89.61 Aligned_cols=49 Identities=31% Similarity=0.519 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCCCC-CCCCCCeecceEecCCCCCcEEEEEEecCeeeC
Q 016480 341 SGYVYTWGKGYCGALG-HGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYYS 389 (389)
Q Consensus 341 ~G~v~~wG~n~~GqLG-~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~s~~ 389 (389)
||+||+||+|.+|||| .++......|++|+.+.+.+|++|+||.+||+.
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~ 50 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLA 50 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEE
Confidence 6999999999999999 778889999999999999999999999999973
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.33 E-value=2.4e-12 Score=86.70 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEE
Q 016480 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231 (389)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~l 231 (389)
||+||+||.|.+||||..........|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955555789999999999999999999999999987
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.5e-14 Score=138.86 Aligned_cols=146 Identities=32% Similarity=0.451 Sum_probs=128.5
Q ss_pred CCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEE
Q 016480 159 FPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVH 238 (389)
Q Consensus 159 ~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~ 238 (389)
.....+|.+++||.+|+++++..|++|.||.|.+||+|.+....... |.+++.+.+.+..+|+||..|+++++.
T Consensus 10 ~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~----- 83 (850)
T KOG0941|consen 10 ILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS----- 83 (850)
T ss_pred HHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh-----
Confidence 33334899999999999999999999999999999999995544444 999999999999999999999999986
Q ss_pred EeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecc
Q 016480 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (389)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~ 318 (389)
|+++++.+|.++++|....||+|+.-..+...|..+..+
T Consensus 84 -----------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~ 122 (850)
T KOG0941|consen 84 -----------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLEL 122 (850)
T ss_pred -----------------------------------------chhhcchhccccccCCcccccccccccccccccHHHHHH
Confidence 999999999999999999999999777777778777655
Q ss_pred ccCCccEEEEEecCCeEEEE-ecCCcEEEEeCCCCC
Q 016480 319 RRKGIHVVRVSAGDEHVVAL-DSSGYVYTWGKGYCG 353 (389)
Q Consensus 319 ~~~~~~v~~i~~G~~hs~al-t~~G~v~~wG~n~~G 353 (389)
.+..+..|+||..|+++. ..-|++|..|.+..|
T Consensus 123 --i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 123 --IGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred --HhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 455899999999999986 566999999988877
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.22 E-value=1.9e-11 Score=71.92 Aligned_cols=30 Identities=43% Similarity=0.810 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEecCCcEEEEeCCCCCC
Q 016480 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGA 354 (389)
Q Consensus 325 v~~i~~G~~hs~alt~~G~v~~wG~n~~Gq 354 (389)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.20 E-value=2.8e-11 Score=71.20 Aligned_cols=30 Identities=40% Similarity=0.484 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEECCCcEEEEeCCCCCc
Q 016480 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300 (389)
Q Consensus 271 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gq 300 (389)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.4e-13 Score=133.06 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=118.6
Q ss_pred CEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEEC
Q 016480 207 PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTG 286 (389)
Q Consensus 207 p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~ 286 (389)
|+.+..+.-.+|.+++||.+|+++++..|++++||.|.+||+|.+.......|..++.+.+ .+..+|++|.+|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g-~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG-VPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcC-CcHHHHhcCCCcchhhhh
Confidence 4444555566789999999999999999999999999999999985544445999999888 589999999999999988
Q ss_pred CCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecc
Q 016480 287 NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 366 (389)
Q Consensus 287 ~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P 366 (389)
|+++++.+|.++++|....||+|+....+...|
T Consensus 84 -----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~ 116 (850)
T KOG0941|consen 84 -----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLP 116 (850)
T ss_pred -----------------------------------------------chhhcchhccccccCCccccccccccccccccc
Confidence 999999999999999999999999878888889
Q ss_pred eEecCCCCCcEEEEEEecCeee
Q 016480 367 EPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 367 ~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
..+..+-+..+.+|+||..|++
T Consensus 117 ~~v~e~i~~~~t~ia~~~~ht~ 138 (850)
T KOG0941|consen 117 LLVLELIGSRVTRIACVRGHTL 138 (850)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 9998888889999999997765
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.30 E-value=9.2e-05 Score=48.43 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=29.2
Q ss_pred cccCChHHHHHHHHhCCCCccccccccccccccccc
Q 016480 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (389)
Q Consensus 10 ~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (389)
+.+||+||+..|| .+|++.|+.++..||+.|...
T Consensus 1 i~~LP~Eil~~If--~~L~~~dl~~~~~vcr~w~~~ 34 (47)
T PF12937_consen 1 ISSLPDEILLEIF--SYLDPRDLLRLSLVCRRWRRI 34 (47)
T ss_dssp CCCS-HHHHHHHH--TTS-HHHHHHHTTSSHHHHHH
T ss_pred ChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999 999999999999999998654
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.88 E-value=0.0016 Score=42.53 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=28.3
Q ss_pred ccccCChHHHHHHHHhCCCCcccccccccccccccc
Q 016480 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (389)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~ 44 (389)
.+.+||+|++..|| .+|++.|+..+..||+.|..
T Consensus 2 ~~~~LP~~il~~Il--~~l~~~~~~~l~~vsk~~~~ 35 (48)
T PF00646_consen 2 PLSDLPDEILQEIL--SYLDPKDLLRLSLVSKRWRS 35 (48)
T ss_dssp HHHHS-HHHHHHHH--HTS-HHHHHHHCTT-HHHHH
T ss_pred CHHHCCHHHHHHHH--HHCcHHHHHHHHHHhhHHHH
Confidence 57899999999999 89999999999999999854
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=94.80 E-value=0.0083 Score=37.43 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=28.5
Q ss_pred CChHHHHHHHHhCCCCccccccccccccccccc
Q 016480 13 LPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (389)
Q Consensus 13 lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (389)
||+|++..|| .+|++.|+..+..+|+.|...
T Consensus 1 lP~~ll~~I~--~~l~~~d~~~~~~vc~~~~~~ 31 (41)
T smart00256 1 LPDEILEEIL--SKLPPKDLLRLRKVSRRWRSL 31 (41)
T ss_pred CCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHH
Confidence 7999999999 899999999999999998653
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.00 E-value=0.97 Score=44.75 Aligned_cols=108 Identities=27% Similarity=0.344 Sum_probs=70.5
Q ss_pred ccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC-ceEEEEECCCcEEE-EeCCCCCc
Q 016480 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYS-FGSGSNFC 300 (389)
Q Consensus 223 ~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~-~h~~~lt~~G~vy~-wG~n~~gq 300 (389)
.|.....||..+|++|.= -|.. ...+.-...+......++.+|++|. .-..+++.+|.||. -|-..+.+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs--~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVS--VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe-------cccc--CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 455666778888888752 1222 2222222222222224689999999 77889999998874 67666666
Q ss_pred cCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEE
Q 016480 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (389)
Q Consensus 301 LG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 347 (389)
.|..-. +..+|+... .++.|+.|....-+|+.+|++|.=
T Consensus 261 ~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEEE
Confidence 654332 333444332 389999999999999999999864
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.93 E-value=3.4 Score=41.11 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=69.2
Q ss_pred ecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC-CeeEEEEcCCcEE-EEeCCCCCc
Q 016480 118 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVF-TCGDNSSFC 194 (389)
Q Consensus 118 ~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~h~~~lt~~G~vy-~wG~n~~gq 194 (389)
.|.....|| .+|++|. +-|.......-...+.+.- ...+.+|++|. .-..+++++|.|| --|-.++.+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 456666778 8888885 2233222221112222221 22689999998 6778999999975 567666666
Q ss_pred ccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEe
Q 016480 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (389)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~w 240 (389)
.|..= ..+..|+... .++.|+.|....-+|+.+|++|.-
T Consensus 261 ~GdsW--kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSW--KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchh--hhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 55432 2344454432 279999999999999999999864
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=0.025 Score=59.76 Aligned_cols=131 Identities=14% Similarity=0.078 Sum_probs=87.5
Q ss_pred CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCC-CCceecCEE-ecccCCcceEEEEccCceEEEEeeCCcEEEee
Q 016480 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT-NRPIFRPRL-VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 241 (389)
Q Consensus 164 ~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~-~~~~~~p~~-v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG 241 (389)
+++.|.+-.+..++|..+|++|.|-+...--+-..-. ......|.. ...+.+.+|+.+++..--.-++|++|+|-+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 7888888788889999999999999877543322111 122333332 23456789999999999999999999999994
Q ss_pred CCCCccccCCCCCC--CCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCc
Q 016480 242 SNTHGQLGHGDTLD--RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 300 (389)
Q Consensus 242 ~n~~gqlG~~~~~~--~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gq 300 (389)
.. +|.+-... ...-++++.. ...+++--|...|.++...+..+|=||--.+-|
T Consensus 455 DE----cgagV~fkLa~ea~Tkieed--~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 DE----CGAGVAFKLAHEAQTKIEED--GEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hh----hhhhhhhhhhhhhhhhhhhh--hHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 32 22221111 1222222221 145777778899999999999999999755433
No 21
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.31 E-value=2.2 Score=47.62 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=68.5
Q ss_pred cccCCcceEEEEc-cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeee--cCCCCCCCEEEEEecCceE-EEEEC
Q 016480 211 EALKGVPCKQVTA-GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI--APLEEVGSVVQIAAGPSYM-LAVTG 286 (389)
Q Consensus 211 ~~~~~~~i~~i~~-G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v--~~~~~~~~i~~I~~G~~h~-~~lt~ 286 (389)
+.+++..|+.++. +.++.++|++.|++-..= .. ..|+.+ +.+. ..|++|++-..|. +|+|.
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~-----------g~p~~l~~~gl~--G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KP-----------GRPVPLSRPGLS--GEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCcccccc--CC-----------CCCccCCCCCCC--cchhheeeccccceeEecC
Confidence 3445555655543 677788888888876541 11 113333 3443 4799999988754 67999
Q ss_pred CCcEEEEeCCCCCccCCC-CCCCccccEEeeccccCCccEEEEEecCCeEEEEecCC
Q 016480 287 NGVVYSFGSGSNFCLGHG-EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 342 (389)
Q Consensus 287 ~G~vy~wG~n~~gqLG~g-~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G 342 (389)
+|++|..=.-.+-+.-.+ .....+.|+.++ .+.+|..+....+|.+.+.-++
T Consensus 763 ~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP----~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 763 TGELFRLPKEAWQGNAEGDQMAAKWQKVALP----DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCceeecCHHHhhCcccCCccccCceeccCC----CCCchhhhhcCCCCceEEEecC
Confidence 999996433222111111 123445555554 3447999999999888876554
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.12 E-value=16 Score=32.72 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=57.0
Q ss_pred eEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEE--EecCceEEEEECCCcEEEEeC
Q 016480 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGS 295 (389)
Q Consensus 218 i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~ 295 (389)
.+...|-....+-=.+||.+-.|--.. +. .++..... .+|..| .--..+-+.=+.+|.|+.|-.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 344444444455557888888885432 11 11111111 223333 334455666688999999975
Q ss_pred CCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC--eEEEEecCCcEEEEeC
Q 016480 296 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGK 349 (389)
Q Consensus 296 n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~--hs~alt~~G~v~~wG~ 349 (389)
..+ ..... +++. ....|.+++.... ..+|.++.|+.|+|-.
T Consensus 154 ~~~------~c~~~----liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 154 GEN------SCTHE----LIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cCC------ccccc----cCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 432 11112 2222 2235677766654 4466789999999974
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=0.025 Score=59.73 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=84.5
Q ss_pred CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCc-eeeeeeeecC-CCCCCEEEEEcCCCeeEEEEcCCcEEEEe
Q 016480 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-QCVSFTRINF-PSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~-~~~~p~~i~~-~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (389)
+++.|.+-.+..++| .+|++|.|-+...--|-..-... ....|....+ ....+|+.+++..-..-++|++|+|-+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 477777778888999 99999999987653332211110 0111211111 12348999999998888999999999996
Q ss_pred CCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCcc
Q 016480 189 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ 247 (389)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gq 247 (389)
... |.+.........+.-....+..+++..|...|.++..+++.+|-||.-.+-|
T Consensus 455 DEc----gagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 DEC----GAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hhh----hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 432 3222211111111122345667888889999999999999999999644433
No 24
>PF13013 F-box-like_2: F-box-like domain
Probab=86.73 E-value=0.2 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=29.3
Q ss_pred ccccCChHHHHHHHHhCCCCcccccccccccccc
Q 016480 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTF 42 (389)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f 42 (389)
.+.|||.||++.|+ .++.+.++..++.+++.+
T Consensus 21 tl~DLP~ELl~~I~--~~C~~~~l~~l~~~~~~~ 52 (109)
T PF13013_consen 21 TLLDLPWELLQLIF--DYCNDPILLALSRTCRAY 52 (109)
T ss_pred chhhChHHHHHHHH--hhcCcHHHHHHHHHHHHH
Confidence 48999999999999 889999999999999954
No 25
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.93 E-value=25 Score=34.21 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=64.9
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeecCCCcEEEEecC--CeeEEE-ECCeEEEEecCCCCccCCCCCCce
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~i~~i~~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~ 150 (389)
++...+|.+|.|--. .|.+...+.. .-+.|+.+.-.. .|.+-= .||.|.+|---.--+ .. .
T Consensus 97 ~ag~i~g~lYlWels-sG~LL~v~~a---------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~---a~---~ 160 (476)
T KOG0646|consen 97 LAGTISGNLYLWELS-SGILLNVLSA---------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS---AD---N 160 (476)
T ss_pred EeecccCcEEEEEec-cccHHHHHHh---------hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc---cc---c
Confidence 566678999999543 3334322211 112344443333 333333 889999996432110 00 0
Q ss_pred eeeeeeecCCCCC--CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcc---cCCCCCCceecCEEecccCCcceEEEEccC
Q 016480 151 CVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCC---GHRDTNRPIFRPRLVEALKGVPCKQVTAGL 225 (389)
Q Consensus 151 ~~~p~~i~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gql---G~~~~~~~~~~p~~v~~~~~~~i~~i~~G~ 225 (389)
...+.|+...... .|+++.+|..- .+.+||+-+...--.+ ..+.--..+..|..+ +-+-+.-+.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si------~av~lDpae 229 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI------KAVALDPAE 229 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccceeeEEEecCCcc------eeEEEcccc
Confidence 1144555544433 78888777543 2334444332221100 000000112222222 223444466
Q ss_pred ceEEEEeeCCcEEEe
Q 016480 226 NFTGFLTIRGHVHTC 240 (389)
Q Consensus 226 ~hs~~lt~~G~v~~w 240 (389)
.+.++=+++|.+|..
T Consensus 230 ~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQN 244 (476)
T ss_pred cEEEecCCcceEEee
Confidence 666777888888864
No 26
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=83.05 E-value=0.4 Score=44.05 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=41.5
Q ss_pred cccccCChHHHHHHHHh---CCCCcccccccccccccccccCCCCChhccchhhHHHHH
Q 016480 8 FSIEELPSHLIFEILTS---GRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQ 63 (389)
Q Consensus 8 ~~~~~lp~~i~~~~~~~---~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~ 63 (389)
++|..||+|||..||.. -.|+-.+|..++.||+.|... ..++.+|...+..+-+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~--~R~~~lwR~aC~KvW~ 161 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC--ARDPELWRLACLKVWQ 161 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH--HcChHHHHHHHHHHHH
Confidence 45688999999999854 257778899999999999775 5667777777754433
No 27
>PHA03098 kelch-like protein; Provisional
Probab=82.94 E-value=56 Score=33.03 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=17.3
Q ss_pred cccccccCChHHHHHHHHhCCCCc
Q 016480 6 RLFSIEELPSHLIFEILTSGRLSA 29 (389)
Q Consensus 6 ~~~~~~~lp~~i~~~~~~~~~l~~ 29 (389)
+.....+||.+.+..+|.+..|..
T Consensus 142 ~~~~f~~l~~~~l~~ll~~~~L~v 165 (534)
T PHA03098 142 NDPDFIYLSKNELIKILSDDKLNV 165 (534)
T ss_pred cCchhhcCCHHHHHHHhcCCCcCc
Confidence 344667889999988887666643
No 28
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=82.78 E-value=14 Score=35.52 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=44.8
Q ss_pred CEEEEEcCCCe---eEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEe
Q 016480 164 HVVQVSASENH---AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (389)
Q Consensus 164 ~i~~i~~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~w 240 (389)
.+..+.+|.++ .+++-.+|++..|-.+.. +.++ .....+.+|.--....+|++..|+||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W---------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL---------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee---------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEE
Confidence 34556778776 777788999988964321 1222 2455688999888889999989999988
Q ss_pred e
Q 016480 241 G 241 (389)
Q Consensus 241 G 241 (389)
.
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 5
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.50 E-value=37 Score=30.57 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=38.8
Q ss_pred ccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCc--eEEEEECCCcEEEEeCCC
Q 016480 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 223 ~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~ 297 (389)
-...+-+.-+.+|.|+.|-... ........|... ..|.+++...+ ..++.++.|++|+|-.-.
T Consensus 134 pnQteLis~dqsg~irvWDl~~------~~c~~~liPe~~------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGE------NSCTHELIPEDD------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCcceEEeecCCCcEEEEEccC------CccccccCCCCC------cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3444555567889999995432 222223333322 45667666654 556789999999997643
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.96 E-value=13 Score=32.99 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.7
Q ss_pred CCEEEEEecCceEEEEECCCcEEEEeCCC
Q 016480 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 269 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~ 297 (389)
.+++.+.|-..+.++||++|.+|+|=-..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 57888999999999999999999996544
No 31
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=78.25 E-value=5.7 Score=44.63 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=45.6
Q ss_pred cCCCCCCCEEEEE-ecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeE-EEEec
Q 016480 263 APLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHV-VALDS 340 (389)
Q Consensus 263 ~~~~~~~~i~~I~-~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs-~alt~ 340 (389)
+.+++ ..|..++ .+.++.++|+++|++-..= . ...|+.++..... ..|++|++-..|. +|++.
T Consensus 698 ~Gl~~-~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 698 EGLED-RVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLS-GEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred cCCCc-CcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCC-cchhheeeccccceeEecC
Confidence 34442 4566655 4678888888888776532 1 1125555433222 3799999998865 56899
Q ss_pred CCcEEEEe
Q 016480 341 SGYVYTWG 348 (389)
Q Consensus 341 ~G~v~~wG 348 (389)
+|++|.-=
T Consensus 763 ~G~Lf~~~ 770 (1774)
T PF11725_consen 763 TGELFRLP 770 (1774)
T ss_pred CCceeecC
Confidence 99999754
No 32
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=77.98 E-value=72 Score=31.18 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=70.6
Q ss_pred cEEEEecCCeeEEE---ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCC--CCEEEEEcCCCeeEEEE--cCCcEE
Q 016480 113 NMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSA--AHVVQVSASENHAAFVL--QSGQVF 185 (389)
Q Consensus 113 i~~i~~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~h~~~lt--~~G~vy 185 (389)
+..+++-..-.+++ ..|++|.|=-+..-.| .+... ..|..+....+-+.++| +||.|.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---------------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILL---------------NVLSAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHH---------------HHHHhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 55565544333333 7899999976532111 11111 14666655555555554 689999
Q ss_pred EEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceE--EE--EeeCCcEEEeeCCCCccccCCCCCCCCCCee
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT--GF--LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs--~~--lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~ 261 (389)
.|=.-+.- .... .....|..+-.--...|+++.+|..-+ -+ .+.|..+-.|--. .|. .-..
T Consensus 149 vW~l~~lv---~a~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~----------LLlt 213 (476)
T KOG0646|consen 149 VWLLTDLV---SADN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGV----------LLLT 213 (476)
T ss_pred EEEEEeec---cccc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cce----------eeEE
Confidence 99744311 0011 112233333222344688888876631 11 1234444444221 010 0111
Q ss_pred ecCCCCCCCEEEEEecCceEEEEECCCcEEEE
Q 016480 262 IAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 293 (389)
Q Consensus 262 v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~w 293 (389)
+..... -..+-+.-+..+.++=+++|++|..
T Consensus 214 i~fp~s-i~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 214 ITFPSS-IKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred EecCCc-ceeEEEcccccEEEecCCcceEEee
Confidence 111111 1233444566677777888888753
No 33
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.76 E-value=16 Score=32.27 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.0
Q ss_pred CcceEEEEccCceEEEEeeCCcEEEeeCC
Q 016480 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 215 ~~~i~~i~~G~~hs~~lt~~G~v~~wG~n 243 (389)
+.++..+.|-..+-+++|++|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 44678899999999999999999999544
No 34
>PHA02713 hypothetical protein; Provisional
Probab=77.27 E-value=70 Score=32.74 Aligned_cols=20 Identities=5% Similarity=0.278 Sum_probs=13.3
Q ss_pred CCCeeEEEEcCCcEEEEeCC
Q 016480 171 SENHAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 171 G~~h~~~lt~~G~vy~wG~n 190 (389)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34344445567899999964
No 35
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=73.54 E-value=6.9 Score=23.22 Aligned_cols=24 Identities=38% Similarity=0.787 Sum_probs=21.5
Q ss_pred CCEEEEEecC-ceEEEEECCCcEEE
Q 016480 269 GSVVQIAAGP-SYMLAVTGNGVVYS 292 (389)
Q Consensus 269 ~~i~~I~~G~-~h~~~lt~~G~vy~ 292 (389)
..+++|++|. +...+++.+|.+|.
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 4699999999 88999999999985
No 36
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.47 E-value=8.2 Score=22.88 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.5
Q ss_pred cEEEEEecC-CeEEEEecCCcEEEE
Q 016480 324 HVVRVSAGD-EHVVALDSSGYVYTW 347 (389)
Q Consensus 324 ~v~~i~~G~-~hs~alt~~G~v~~w 347 (389)
.+++|++|. ....+++.+|++|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 888999999999863
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.41 E-value=1.4e+02 Score=31.36 Aligned_cols=122 Identities=10% Similarity=-0.017 Sum_probs=65.8
Q ss_pred CEEEEEcCCC--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEE--eeCCcEEE
Q 016480 164 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL--TIRGHVHT 239 (389)
Q Consensus 164 ~i~~i~~G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~l--t~~G~v~~ 239 (389)
-|-+++.+.. -++++...|.-.++|...-|||..-.-....+.-++--.+ .++..++-..+-.++. .+||+|-.
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEE
Confidence 3455555533 2456667799999999999998865442222221111111 1334444444433333 45777777
Q ss_pred eeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCC
Q 016480 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 298 (389)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 298 (389)
|-... ..-.............++...-.+..+...-||.|-+|-...+
T Consensus 377 Wn~~S-----------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 377 WNTQS-----------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EeccC-----------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 74321 1111111111111345666777777777888999999987664
No 38
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=1.9e+02 Score=32.33 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=98.7
Q ss_pred EE-ECCeEEEEecCCCCccCCCCCCce-eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCC-CcccCCCCC
Q 016480 125 LI-SNSSVFSCGSSLCGVLGHGPETTQ-CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSS-FCCGHRDTN 201 (389)
Q Consensus 125 ~l-~~g~vy~wG~n~~gqlG~~~~~~~-~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~-gqlG~~~~~ 201 (389)
-+ .|.++|.|-.+..+++-.=+..+. ......+....+.-+- --.|.++|...-+|+..|-... .+.+.....
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~----~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP----EIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh----hhheeEEecccceEEEEEEEeccccCcccccc
Confidence 45 899999999988776653322221 1111111111111111 1368899999989998884321 111111110
Q ss_pred CceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCC-------------CccccC-----CCCCCCCCCeeec
Q 016480 202 RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT-------------HGQLGH-----GDTLDRPTPKSIA 263 (389)
Q Consensus 202 ~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~-------------~gqlG~-----~~~~~~~~p~~v~ 263 (389)
.. -.| ...+..|..|.+ +++|+||.-|.+. +++--. ........|..++
T Consensus 170 ~~----~~i-~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 170 TS----FKI-SVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred cc----eee-ecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 10 011 122334444443 5566666555433 121000 0001123455333
Q ss_pred CC-CCCCCEEEEEecCceEE--EEECCCcEEEEeCCCCCccCCCCC-----------CCccccEEeeccccCCccEEEEE
Q 016480 264 PL-EEVGSVVQIAAGPSYML--AVTGNGVVYSFGSGSNFCLGHGEQ-----------HDELQPRAIQTFRRKGIHVVRVS 329 (389)
Q Consensus 264 ~~-~~~~~i~~I~~G~~h~~--~lt~~G~vy~wG~n~~gqLG~g~~-----------~~~~~P~~i~~~~~~~~~v~~i~ 329 (389)
.. ...++|.+|+.+....+ ++++.|.|=+|=....|+-+.-.- .+...|. ....-.+|++|+
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~----~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPL----DDSVFFSIVSIS 312 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccC----CCcccceeEEec
Confidence 33 22358999999987654 567788777775555554432100 0000110 011112345543
Q ss_pred ------ecCCeEEEEecCC-cEEEEeC
Q 016480 330 ------AGDEHVVALDSSG-YVYTWGK 349 (389)
Q Consensus 330 ------~G~~hs~alt~~G-~v~~wG~ 349 (389)
.-+-|.+|+|..| ++|.=|.
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 3366899999998 6776664
No 39
>PRK05560 DNA gyrase subunit A; Validated
Probab=69.19 E-value=1.7e+02 Score=31.52 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=85.3
Q ss_pred EcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC-----ceEEEEeeCCcEEEeeCC
Q 016480 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 169 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~n 243 (389)
+....+.+++|+.|++|..-...--..+...... .....+....+.+|+.+.+-. ...+++|++|.+----.+
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGR--PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCe--EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 3455668889999999998765432222111111 111122333566777776644 346778889877654332
Q ss_pred CCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC
Q 016480 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (389)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~ 321 (389)
.+-.... . -...-.+...+.++.+.... .+.+++|++|++|.+=...--..|... ....+..+. .
T Consensus 623 ~~~~~~r------~-G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~ 689 (805)
T PRK05560 623 EFSNIRS------N-GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-E 689 (805)
T ss_pred Hhhhccc------C-CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-C
Confidence 2211000 0 11111112224555554443 468999999999988654432222211 122222332 3
Q ss_pred CccEEEEEecC---CeEEEEecCCcEEEE
Q 016480 322 GIHVVRVSAGD---EHVVALDSSGYVYTW 347 (389)
Q Consensus 322 ~~~v~~i~~G~---~hs~alt~~G~v~~w 347 (389)
+.+|+.+.+-. .+.+++|+.|.+.-.
T Consensus 690 ~E~Vv~~~~v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILTVTENGYGKRT 718 (805)
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCeEEEE
Confidence 44677666543 256778888865544
No 40
>PLN02153 epithiospecifier protein
Probab=68.48 E-value=1.1e+02 Score=28.92 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=11.7
Q ss_pred eeEEEECCeEEEEecC
Q 016480 122 HTLLISNSSVFSCGSS 137 (389)
Q Consensus 122 h~~~l~~g~vy~wG~n 137 (389)
|+++.-+++||++|-.
T Consensus 79 ~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 79 VRMVAVGTKLYIFGGR 94 (341)
T ss_pred eEEEEECCEEEEECCC
Confidence 4444478899999964
No 41
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=67.11 E-value=1.5e+02 Score=32.50 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCe--eEEEEcCCcEEEEeCC
Q 016480 163 AHVVQVSASENH--AAFVLQSGQVFTCGDN 190 (389)
Q Consensus 163 ~~i~~i~~G~~h--~~~lt~~G~vy~wG~n 190 (389)
..|.+|+....+ .++++.+|.++.|-..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 379999998888 7999999987776643
No 42
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=65.20 E-value=2.3e+02 Score=31.63 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=64.1
Q ss_pred cCCCcEEEEecCCe-eEEE---ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEE-EcCCCeeEEE-EcCC
Q 016480 109 TSAGNMQITTGRYH-TLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQV-SASENHAAFV-LQSG 182 (389)
Q Consensus 109 ~~~~i~~i~~G~~h-~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i-~~G~~h~~~l-t~~G 182 (389)
....+.+++..+.| ++++ +||.|-+|-.-. ..|.+..... ..+ -.+...++.+| .|+..+.+|+ ++||
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS--~lt--ys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARS--ELT--YSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeee--eEE--EeccCCceEEEEeccCCCeEEEEcCCC
Confidence 33456688888888 6666 899999997643 2233211111 111 11233466665 3666666555 7789
Q ss_pred cEEEEeCCCCCcccCCCCCCceecCEEeccc-CCcceEEEEccC----ceE-EEEeeCCcEEEeeCC
Q 016480 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAGL----NFT-GFLTIRGHVHTCGSN 243 (389)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G~----~hs-~~lt~~G~v~~wG~n 243 (389)
.|-..+-+.+.+ ......-.++..+ ..-.++++.+-. .|. ++.|..+.+..|+-.
T Consensus 1121 ~v~~~~id~~~~------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNV------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred eEEEEEcccccc------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 988887665411 0101111111111 122244443322 233 456888899999753
No 43
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=63.11 E-value=2.2e+02 Score=30.65 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=83.5
Q ss_pred EcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc-----CceEEEEeeCCcEEEeeCC
Q 016480 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 169 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~hs~~lt~~G~v~~wG~n 243 (389)
+...++.+++|+.|++|..-...--..+........ ...+....+.+|+.+.+- ....+++|.+|.+--.-.+
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPI--VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCH--HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 345566888999999999844332222211111111 111223345667766652 1246778888877655333
Q ss_pred CCccccCCCCCCCCCCeeecCCCCCCCEEEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC
Q 016480 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (389)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~ 321 (389)
.+-... . .-...-.+...+.++.+... ..+.+++|++|++|.+=...--..|.... ...+-.+. .
T Consensus 621 ~~~~~~------r-~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~ 687 (800)
T TIGR01063 621 EFSNIR------S-NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-N 687 (800)
T ss_pred Hhhhhc------c-CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-C
Confidence 221100 0 00111111122455554433 34689999999999886655433332221 12222232 3
Q ss_pred CccEEEEEec--CCeEEEEecCCcEEEE
Q 016480 322 GIHVVRVSAG--DEHVVALDSSGYVYTW 347 (389)
Q Consensus 322 ~~~v~~i~~G--~~hs~alt~~G~v~~w 347 (389)
+.+|+.+.+- ..+.+++|++|.+.-.
T Consensus 688 ~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 688 EDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred CCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 4467666543 3356778888866555
No 44
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=62.07 E-value=1.2e+02 Score=31.06 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=31.5
Q ss_pred EEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEE---EEecCCeEEEEecCCcEEEEeC
Q 016480 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR---VSAGDEHVVALDSSGYVYTWGK 349 (389)
Q Consensus 283 ~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~---i~~G~~hs~alt~~G~v~~wG~ 349 (389)
+.+-++.+|+.|-.+. +- ....++.......+.+. ......+..+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~---------~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TS---------ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CC---------ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445779999996542 10 00112222222223333 3446667777777899999984
No 45
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=61.42 E-value=79 Score=28.45 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCEEEEEecCceEEEEECCCcEEEEeCCCCCc-cCCCCCCCccccEEe
Q 016480 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC-LGHGEQHDELQPRAI 315 (389)
Q Consensus 269 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gq-LG~g~~~~~~~P~~i 315 (389)
.+|-.++.-..|-+. --+|.||+|-+|+.-. ++.-..-....|+.+
T Consensus 63 gpiy~~~f~d~~Lls-~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLS-GGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhheee-ccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 466677666555443 3469999999998654 444333333345444
No 46
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=56.45 E-value=2.5e+02 Score=31.37 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=65.9
Q ss_pred CEEEEEcCCCe-eEEEE--cCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEE-ccCceEEEE-eeCCcEE
Q 016480 164 HVVQVSASENH-AAFVL--QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT-AGLNFTGFL-TIRGHVH 238 (389)
Q Consensus 164 ~i~~i~~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~hs~~l-t~~G~v~ 238 (389)
.+.+++....| +++++ +||.|-.|-.-.. .|.+.. ..-...-...+.++.++. |+..+.+|+ ++||.|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s----~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGS----ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcce----eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 56688888888 67765 6899999976542 122111 111111122344555543 455565554 7789998
Q ss_pred EeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCc-----eEEEEECCCcEEEEeCCC
Q 016480 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~-----h~~~lt~~G~vy~wG~n~ 297 (389)
..+-+.+.+ ......-.+++.+.....+++.-+-.. -.++.|..+.+..|+-..
T Consensus 1124 ~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1124 VLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 887765411 011111122223332234555543222 245578888888898543
No 47
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.86 E-value=2.2e+02 Score=27.78 Aligned_cols=74 Identities=14% Similarity=-0.030 Sum_probs=42.7
Q ss_pred ecCCCCCCEEEEEcC-CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEec--ccCCcceEEEEccCceEEEEee
Q 016480 157 INFPSAAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAGLNFTGFLTI 233 (389)
Q Consensus 157 i~~~~~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~~~~~i~~i~~G~~hs~~lt~ 233 (389)
+.+.. .+|+.+.-- ..+-++|+++|.++..- -+|.. . ...+..+. ...+.++-.+..+.+-.++||.
T Consensus 76 i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~ 145 (410)
T PF04841_consen 76 IPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG 145 (410)
T ss_pred EEECC-CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-e------echhhhccccCcccccccccccCCCCEEEECC
Confidence 33433 467776643 46778899999988763 33332 0 11121221 1122334444556566788999
Q ss_pred CCcEEEe
Q 016480 234 RGHVHTC 240 (389)
Q Consensus 234 ~G~v~~w 240 (389)
++++|.-
T Consensus 146 ~~~~~~v 152 (410)
T PF04841_consen 146 NNRFYVV 152 (410)
T ss_pred CCeEEEE
Confidence 9999987
No 48
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.41 E-value=2e+02 Score=32.27 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=45.0
Q ss_pred CcceEEEEccCceEE--EEeeCCcEEEeeCCCCccccCCCCC-----------CCCCCeeecCCCCCCCEEEEEe-----
Q 016480 215 GVPCKQVTAGLNFTG--FLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAA----- 276 (389)
Q Consensus 215 ~~~i~~i~~G~~hs~--~lt~~G~v~~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~~i~~I~~----- 276 (389)
..+|++|+.+....+ .+++.|.|-+|=....|+-+.-... +...|..=+.+ .+|++|+.
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f---~~IvsI~~l~~~e 318 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVF---FSIVSISPLSASE 318 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCccc---ceeEEecccCccc
Confidence 457999999888765 4677888877755554443311000 00111111111 24555543
Q ss_pred -cCceEEEEECCC-cEEEEeC
Q 016480 277 -GPSYMLAVTGNG-VVYSFGS 295 (389)
Q Consensus 277 -G~~h~~~lt~~G-~vy~wG~ 295 (389)
-+-|.+|+|..| ++|.=|.
T Consensus 319 s~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 319 SNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccceeEEEEecCCeEEEEecc
Confidence 356899999999 7887654
No 49
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.16 E-value=1.6e+02 Score=28.25 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.5
Q ss_pred CeeEEE-ECCeEEEEecC
Q 016480 121 YHTLLI-SNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n 137 (389)
.|+++. .+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466666 89999999974
No 50
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.23 E-value=42 Score=18.89 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.9
Q ss_pred cceEEEEccCceEEEEeeCCcEEE
Q 016480 216 VPCKQVTAGLNFTGFLTIRGHVHT 239 (389)
Q Consensus 216 ~~i~~i~~G~~hs~~lt~~G~v~~ 239 (389)
..|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 468999999999999998876544
No 51
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.29 E-value=2.4e+02 Score=27.11 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=58.2
Q ss_pred cEEEEecCC-eeEE-E-ECCe-EEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC-CeeEEEEcCCcEEEE
Q 016480 113 NMQITTGRY-HTLL-I-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVFTC 187 (389)
Q Consensus 113 i~~i~~G~~-h~~~-l-~~g~-vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~h~~~lt~~G~vy~w 187 (389)
+..|..|.. |... . .||+ +|+.+. .| ....+.+...+.+..|..|. -+.++++.||+...-
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg------------~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR--DG------------TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET--TS------------EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC--CC------------eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 567777654 6644 4 6665 888753 23 34567777777888898886 567889999996665
Q ss_pred eCCCCCcccCCCCCCceecCEE-ecc------cCCcceEEEEccCc---eEEEEeeCCcEEEe
Q 016480 188 GDNSSFCCGHRDTNRPIFRPRL-VEA------LKGVPCKQVTAGLN---FTGFLTIRGHVHTC 240 (389)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~-v~~------~~~~~i~~i~~G~~---hs~~lt~~G~v~~w 240 (389)
++...+++-.-+.. ...|.. ++. ....++..|.+... +.+.+.+.|++|.-
T Consensus 95 ~n~~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 95 ANYEPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEETTEEEEEETT--T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EecCCCceeEeccc--cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 65444554432221 111111 110 12335556654322 45566777888866
No 52
>PHA03098 kelch-like protein; Provisional
Probab=48.01 E-value=3.1e+02 Score=27.67 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.7
Q ss_pred CeeEEEECCeEEEEecCC
Q 016480 121 YHTLLISNSSVFSCGSSL 138 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (389)
.|+++.-+|+||++|-..
T Consensus 335 ~~~~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGIY 352 (534)
T ss_pred cceEEEECCEEEEEeCCC
Confidence 354444889999999643
No 53
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=46.68 E-value=45 Score=31.19 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=40.1
Q ss_pred EEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEE--EEeeCCcEEEeeC
Q 016480 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTG--FLTIRGHVHTCGS 242 (389)
Q Consensus 177 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~--~lt~~G~v~~wG~ 242 (389)
+..+.|+||.|-.... .+...++......+..|+|.+....-++ +++++|.||.|-.
T Consensus 324 ~gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3457899999985431 2235666777777888888888776554 4588999999953
No 54
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=46.25 E-value=24 Score=21.49 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.6
Q ss_pred CeEEEEecCCcEEEEeCC
Q 016480 333 EHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 333 ~hs~alt~~G~v~~wG~n 350 (389)
-+.++++.+|.||.-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 467899999999999964
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=46.22 E-value=3.4e+02 Score=27.69 Aligned_cols=140 Identities=8% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccC
Q 016480 171 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 250 (389)
Q Consensus 171 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~ 250 (389)
|.+--+-=+.|.++..|-.+. |++-..-. .....|..+.-...+.+--+.|..|.+|=..
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~------- 319 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCST-GECTHSLQ------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT------- 319 (537)
T ss_pred CCCEEEEEecCCcEEeEecCC-CcEEEEec------------CCCceEEEEEccCceEeeccCCceEEEEecc-------
Confidence 344434445577777877444 33321100 0111234444444444334467778888432
Q ss_pred CCCCCCCCCeeecCCC-CCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE
Q 016480 251 GDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (389)
Q Consensus 251 ~~~~~~~~p~~v~~~~-~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~ 329 (389)
.+..+..+. ....|..|.+...-.+.-+.||.|-.|=... -+.+..+......|..+.
T Consensus 320 -------n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~--------------~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 320 -------NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT--------------GKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred -------CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh--------------ceeeeeecCCcceEEEEE
Confidence 233333332 2357999999999999999999999986542 122333333333677777
Q ss_pred ecC-CeEEEEecCCcEEEEeCCC
Q 016480 330 AGD-EHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 330 ~G~-~hs~alt~~G~v~~wG~n~ 351 (389)
.+. .+.+--..|+.+-.|=...
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred ecCcceEEeeeeccceEeecCCc
Confidence 776 6666666667777775433
No 56
>PHA02713 hypothetical protein; Provisional
Probab=45.49 E-value=1.5e+02 Score=30.38 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=12.9
Q ss_pred cCCeeEEE-ECCeEEEEecC
Q 016480 119 GRYHTLLI-SNSSVFSCGSS 137 (389)
Q Consensus 119 G~~h~~~l-~~g~vy~wG~n 137 (389)
.+.+..+. -+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34333444 88999999964
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=44.55 E-value=1.5e+02 Score=27.41 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=62.4
Q ss_pred cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC---ceEEEEECCCcEEEEeCCC-CC
Q 016480 224 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGS-NF 299 (389)
Q Consensus 224 G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~n~-~g 299 (389)
+.-|-++...||.||.-+.. .+.+|+-+... .+++.+..|. -|.+++..||..|.+-... -+
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 45567788999999965543 33444322111 3455555443 5888888899888775432 12
Q ss_pred ccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeC-CCCCCCCC
Q 016480 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK-GYCGALGH 357 (389)
Q Consensus 300 qLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~-n~~GqLG~ 357 (389)
.++ .+.-..+-..++ .+-+-++-.+.+++..|+||.-|. +.+|+|--
T Consensus 128 R~d--pkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP 175 (353)
T COG4257 128 RLD--PKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDP 175 (353)
T ss_pred Eec--CcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCc
Confidence 221 111111111111 223345667899999999999996 55666653
No 58
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=44.17 E-value=1.7e+02 Score=27.60 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=12.3
Q ss_pred CeeEEE-ECCeEEEEecC
Q 016480 121 YHTLLI-SNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n 137 (389)
.|+.+. .+|+||++|--
T Consensus 110 ~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGV 127 (346)
T ss_pred ceeEEEEeCCEEEEEcCc
Confidence 355553 79999999864
No 59
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.98 E-value=3.1e+02 Score=26.33 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred CCEEEEEcCCC-ee-EEEEcCCc-EEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc-eEEEEeeCCcEE
Q 016480 163 AHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTIRGHVH 238 (389)
Q Consensus 163 ~~i~~i~~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~~lt~~G~v~ 238 (389)
+.+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+.......+..|..|.. +.++++.||+..
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE------------EEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 35777777654 65 55678786 787653 2322 2233334445677777765 567889999866
Q ss_pred EeeCCCCccccCCCCCCCCCCeeecCC-----CCCCCEEEEEecCc---eEEEEECCCcEEEEe
Q 016480 239 TCGSNTHGQLGHGDTLDRPTPKSIAPL-----EEVGSVVQIAAGPS---YMLAVTGNGVVYSFG 294 (389)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~-----~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG 294 (389)
.-++...+++-.-+......-..|+.. ....++..|.+-.. +.+.+.+.|++|.--
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 555443444432222221111111110 01135666654332 455667778888764
No 60
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=42.17 E-value=2.5e+02 Score=26.17 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.3
Q ss_pred CeeEEEECCeEEEEecCC
Q 016480 121 YHTLLISNSSVFSCGSSL 138 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (389)
.|++++.+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 455555789999999753
No 61
>PLN02153 epithiospecifier protein
Probab=41.41 E-value=3.1e+02 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=13.3
Q ss_pred CeeEEEECCeEEEEecCC
Q 016480 121 YHTLLISNSSVFSCGSSL 138 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (389)
.|++++.++++|++|--.
T Consensus 130 ~~~~~~~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMASDENHVYVFGGVS 147 (341)
T ss_pred eeEEEEECCEEEEECCcc
Confidence 566655888999998643
No 62
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=40.69 E-value=3.4e+02 Score=26.02 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.2
Q ss_pred CeeEEEEcCCcEEEEeCC
Q 016480 173 NHAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n 190 (389)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999964
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=40.60 E-value=2.8e+02 Score=25.16 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=25.4
Q ss_pred ceecCEEecccCCcceEEEEccCceEEEE-eeCCcEEEeeCC
Q 016480 203 PIFRPRLVEALKGVPCKQVTAGLNFTGFL-TIRGHVHTCGSN 243 (389)
Q Consensus 203 ~~~~p~~v~~~~~~~i~~i~~G~~hs~~l-t~~G~v~~wG~n 243 (389)
+...|..+..-.+.-=+-+-|-..|+++- ++++.|-.|-..
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 34445555544433224567777887765 778999999543
No 64
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.23 E-value=3.6e+02 Score=26.30 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=38.2
Q ss_pred CCEEEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEE
Q 016480 269 GSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (389)
Q Consensus 269 ~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~ 346 (389)
.++.+|+.. ..|.++++++|.+|.. ..+..+ ...-..+. .......-..||.. ++++.-...|+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~-ssDf~~--------~~~e~~~~---~~~~p~~~~WCG~d-av~l~~~~~l~l 283 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV-SSDFSE--------KLCEFDTD---SKSPPKQMAWCGND-AVVLSWEDELLL 283 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE-ECcccc--------eeEEeecC---cCCCCcEEEEECCC-cEEEEeCCEEEE
Confidence 468887776 4577788899999875 333211 11111111 11223344467774 555555668888
Q ss_pred EeC
Q 016480 347 WGK 349 (389)
Q Consensus 347 wG~ 349 (389)
.|.
T Consensus 284 vg~ 286 (410)
T PF04841_consen 284 VGP 286 (410)
T ss_pred ECC
Confidence 884
No 65
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=38.99 E-value=1.6e+02 Score=30.29 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=30.6
Q ss_pred EEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeC
Q 016480 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (389)
Q Consensus 230 ~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~ 295 (389)
+.+-++.||+.|-.+. +... .......|+.-+- ..+..+.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~-~~VE~ydp~~~~W----~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL-SSVERYDPETNQW----TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc-ceEEEEcCCCCce----eEcccCccccccccEEEECCEEEEEec
Confidence 4455889999986532 1000 0011111111100 112223345666667777899999986
No 66
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=38.87 E-value=1.4e+02 Score=26.85 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=37.6
Q ss_pred EEEecCCe-eEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEE-EEcCCCeeEEEEcCCcEEEEeCCC
Q 016480 115 QITTGRYH-TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQ-VSASENHAAFVLQSGQVFTCGDNS 191 (389)
Q Consensus 115 ~i~~G~~h-~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~-i~~G~~h~~~lt~~G~vy~wG~n~ 191 (389)
+++.++|. +..+ .||+|++.|-....-.-.-+... ..+.+..++......+ .....+=.+.|..+|+||.|+.+.
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCCcccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 36777754 4555 99999999965411110000000 0011111111111111 112233367888999999999865
No 67
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=37.85 E-value=5.5e+02 Score=27.72 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred cCCCeeEEEEcCCc-EEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEe
Q 016480 170 ASENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (389)
Q Consensus 170 ~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~w 240 (389)
.+....++++.+|+ |+++|.+..- -.-........|..+.. .+..|..|+|-..|.+.-++++.|-..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~i--r~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDI--RKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCce--EEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEe
Confidence 34455566677776 5666655321 11111112245555543 466789999998888888888865443
No 68
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.20 E-value=4.1e+02 Score=25.44 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=42.5
Q ss_pred cEEEEecCCeeEEE-EC-CeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC-e--------eEEEEcC
Q 016480 113 NMQITTGRYHTLLI-SN-SSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-H--------AAFVLQS 181 (389)
Q Consensus 113 i~~i~~G~~h~~~l-~~-g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-h--------~~~lt~~ 181 (389)
+..|..|...-.++ .| ..+|+.-. .+-.+-++...+ ...-+.......+..|..|.. + .++|+.|
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEec-cccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence 44577776544457 55 45676644 223333444443 334445555556666766554 3 8899999
Q ss_pred Cc-EEEEeCC
Q 016480 182 GQ-VFTCGDN 190 (389)
Q Consensus 182 G~-vy~wG~n 190 (389)
|+ +|..-..
T Consensus 116 gk~l~V~n~~ 125 (352)
T TIGR02658 116 NKTLLFYQFS 125 (352)
T ss_pred CCEEEEecCC
Confidence 97 7766433
No 69
>PHA02790 Kelch-like protein; Provisional
Probab=33.86 E-value=3.3e+02 Score=27.18 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.0
Q ss_pred EEEEcCCcEEEEeCC
Q 016480 176 AFVLQSGQVFTCGDN 190 (389)
Q Consensus 176 ~~lt~~G~vy~wG~n 190 (389)
.+..-+|+||..|-.
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344567999999864
No 70
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=33.53 E-value=67 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=25.1
Q ss_pred CEEEEEec-CceEEEEECCCcEEEEeCCCCCcc
Q 016480 270 SVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCL 301 (389)
Q Consensus 270 ~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqL 301 (389)
.=..|+|. ....++|++||.+|+-+--+.|.+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45689999 888999999999999987666654
No 71
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=33.48 E-value=1.2e+02 Score=22.09 Aligned_cols=40 Identities=3% Similarity=0.085 Sum_probs=28.0
Q ss_pred ccceeecCCCcEEEEec-CCeeEEE-ECCeEEEEecCCCCcc
Q 016480 103 SSDIVETSAGNMQITTG-RYHTLLI-SNSSVFSCGSSLCGVL 142 (389)
Q Consensus 103 ~p~~v~~~~~i~~i~~G-~~h~~~l-~~g~vy~wG~n~~gql 142 (389)
.|..+.....=..|+|. ....++| .||.+|.-+--+.|.+
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 35555566667789999 8889999 9999999887666653
No 72
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=32.33 E-value=23 Score=26.73 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.2
Q ss_pred cccccCChHHHHHHHHhCCCCccccccc
Q 016480 8 FSIEELPSHLIFEILTSGRLSAVDLAHL 35 (389)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l 35 (389)
.....||.||-..|| .+|+..||..+
T Consensus 70 ~~w~~LP~EIk~~Il--~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKIL--EYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHH--HcCCHHHHHHH
Confidence 345789999999999 89999998754
No 73
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.25 E-value=45 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.0
Q ss_pred CCeEEEEecCCcEEEEe
Q 016480 332 DEHVVALDSSGYVYTWG 348 (389)
Q Consensus 332 ~~hs~alt~~G~v~~wG 348 (389)
..|+++...+++||.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 46888888889999998
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=32.03 E-value=4.5e+02 Score=24.92 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.5
Q ss_pred ceEEEEECCCcEEEE
Q 016480 279 SYMLAVTGNGVVYSF 293 (389)
Q Consensus 279 ~h~~~lt~~G~vy~w 293 (389)
.+.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 567888899999986
No 75
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=30.30 E-value=7.8e+02 Score=27.21 Aligned_cols=130 Identities=6% Similarity=0.049 Sum_probs=68.8
Q ss_pred CEEEEE--cCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEec-c-cCCcceEEEEccCc-----eEEEEeeC
Q 016480 164 HVVQVS--ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-A-LKGVPCKQVTAGLN-----FTGFLTIR 234 (389)
Q Consensus 164 ~i~~i~--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~-~~~~~i~~i~~G~~-----hs~~lt~~ 234 (389)
.+..+. ...++.+++|+.|++|.-=...--+........+. -..+. . +.+.+|+.+.+-.. +.+++|++
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I--~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERL--DEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEH--HHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 444443 34566788999999998764432221111111111 11111 0 13566777766532 35778999
Q ss_pred CcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC-----ceEEEEECCCcEEEEeCCCCCccCC
Q 016480 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGH 303 (389)
Q Consensus 235 G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~-----~h~~~lt~~G~vy~wG~n~~gqLG~ 303 (389)
|.|.-.=...+-. .... ...-.+.+.+.++.+.... .+.+++|++|.+.-+-.+.--.+|.
T Consensus 631 G~VKrt~L~ef~~-------~r~~-~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 631 GGIKKTSLDKFVT-------NYTK-LMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CeEEEEehhhccc-------cccc-eEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 9887664332210 0111 2222333335676665433 3588999999888776655444443
No 76
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.62 E-value=7.5e+02 Score=26.75 Aligned_cols=213 Identities=13% Similarity=0.034 Sum_probs=104.2
Q ss_pred CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC-----CeeEEEEcCCcEEEEeCCCCCc
Q 016480 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSSFC 194 (389)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~~gq 194 (389)
.+.+++ +.|++|..-...--..+...... .-...+.+....+|+.+.+-. ...+++|++|.+.-.-...+-.
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGR--PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCe--EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 344455 89999998665222221111111 011123445556787776644 3468889999877654333211
Q ss_pred ccCCCCCCceecCEEecccCCcceEEEEc--cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEE
Q 016480 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 272 (389)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~ 272 (389)
...+ -...+..-.+..++.+.. ...+.+++|++|++|.+-...--..|... ....+..+...++|+
T Consensus 627 ~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~~~E~Vv 694 (805)
T PRK05560 627 IRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLREGDEVV 694 (805)
T ss_pred cccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCCCCCEEE
Confidence 0000 000011112333443333 34467889999999988654432222211 122223344446777
Q ss_pred EEEecC---ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEE--EecCCeEEEEecCCcEEEE
Q 016480 273 QIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTW 347 (389)
Q Consensus 273 ~I~~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i--~~G~~hs~alt~~G~v~~w 347 (389)
.+.+.. .+.+++|+.|.+.-.=.+++-....+ ..-...-.+...+..++.+ ..+....+++|.+|++.-+
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf 769 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRT 769 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEE
Confidence 766543 26788888886665433322111100 0011111121112234433 2345567888999988887
Q ss_pred eCCCC
Q 016480 348 GKGYC 352 (389)
Q Consensus 348 G~n~~ 352 (389)
-.++-
T Consensus 770 ~~~eI 774 (805)
T PRK05560 770 RVSEI 774 (805)
T ss_pred EHHHC
Confidence 75543
No 77
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=28.63 E-value=2.4e+02 Score=27.17 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEEecCCe---eEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEe
Q 016480 115 QITTGRYH---TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (389)
Q Consensus 115 ~i~~G~~h---~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (389)
.+.+|..+ .+++ .+|++..|-.+ ..+.++. ....+.+|..=.....|++..|+||.+.
T Consensus 164 ~~~~~~~~~~~vl~i~~~g~l~~w~~~---------------~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 164 KVKEGDNHRDGVLGIGRDGKINYWDGN---------------VLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EeecCCCcceEEEEEeecCcEeeecCC---------------eeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34666664 5556 88999888632 2333432 3347889988888888999999999987
No 78
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.39 E-value=66 Score=20.43 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.0
Q ss_pred CeeEEEECCeEEEEecC
Q 016480 121 YHTLLISNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (389)
.|++++-++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 35555599999999954
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=27.61 E-value=5.3e+02 Score=24.39 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=30.3
Q ss_pred CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEE
Q 016480 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (389)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 347 (389)
..+.++.+.+|.||++-... |++= -..+... ......-+.. +.+-++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~-~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDG-SGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCC-CccccCCEEE-CCEEEEEeCCceEEEe
Confidence 34677778899999985432 2110 0111000 0001111233 3567888899999986
No 80
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=26.95 E-value=37 Score=26.30 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.3
Q ss_pred ccccCChHHHHHHHHhCCCCcccccccccccccc
Q 016480 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTF 42 (389)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f 42 (389)
++.++|-++|.-|| ..++|..|..+|..+..+
T Consensus 3 dvG~~py~ll~piL--~~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 3 DVGDVPYHLLRPIL--EKCSPEQLRRIEDNNPHL 34 (109)
T ss_pred ccCCCCHHHHHHHH--ccCCHHHHHHHHHhCCCc
Confidence 56789999999999 778999999999888664
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=27 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=34.4
Q ss_pred cccCChHHHHHHHHhCCCCcccccccccccccccccCCCCChhccchhh
Q 016480 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVD 58 (389)
Q Consensus 10 ~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~ 58 (389)
-+.||++|++.|| .-|--.||.....+|+-|-.. -.++..|.+.+
T Consensus 98 ~~slpDEill~IF--s~L~kk~LL~~~~VC~Rfyr~--~~de~lW~~lD 142 (419)
T KOG2120|consen 98 WDSLPDEILLGIF--SCLCKKELLKVSGVCKRFYRL--ASDESLWQTLD 142 (419)
T ss_pred cccCCHHHHHHHH--HhccHHHHHHHHHHHHHHhhc--cccccceeeec
Confidence 4789999999999 669999999999999988543 23334454444
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.19 E-value=6.9e+02 Score=24.51 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCEEEEEecCceEEEEE--CCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEE--ecCCcE
Q 016480 269 GSVVQIAAGPSYMLAVT--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYV 344 (389)
Q Consensus 269 ~~i~~I~~G~~h~~~lt--~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~al--t~~G~v 344 (389)
.+|..++...+.-++|. .+.++..|-.-+. ..+.+-..-+....-|.+-..|.+.+++. ++|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchh-----------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 46777665554444443 4668888864321 11222222221222345555566656666 688999
Q ss_pred EEEeCCC
Q 016480 345 YTWGKGY 351 (389)
Q Consensus 345 ~~wG~n~ 351 (389)
|.|=+-.
T Consensus 465 yIWhr~s 471 (519)
T KOG0293|consen 465 YIWHRIS 471 (519)
T ss_pred EEEEccC
Confidence 9998643
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.80 E-value=4.6e+02 Score=22.33 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=32.4
Q ss_pred CcEEEEecCC-eeEEE-E-CCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC-CeeEEEEc-CCcEEE
Q 016480 112 GNMQITTGRY-HTLLI-S-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQ-SGQVFT 186 (389)
Q Consensus 112 ~i~~i~~G~~-h~~~l-~-~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~h~~~lt~-~G~vy~ 186 (389)
.|..+..-.. ..++. . +|.|+.|-..... ....+. .....|..++... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------------CLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE------------EEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 3555554443 33334 4 8888888654211 011111 1122466665544 23333333 888888
Q ss_pred EeCC
Q 016480 187 CGDN 190 (389)
Q Consensus 187 wG~n 190 (389)
|-..
T Consensus 162 ~d~~ 165 (289)
T cd00200 162 WDLR 165 (289)
T ss_pred EEcc
Confidence 8654
No 84
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.74 E-value=9.5e+02 Score=25.97 Aligned_cols=211 Identities=12% Similarity=0.034 Sum_probs=101.7
Q ss_pred CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC-----CCeeEEEEcCCcEEEEeCCCCCc
Q 016480 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGDNSSFC 194 (389)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~n~~gq 194 (389)
.+.+++ +.|++|..-...--..+...... .-...+.+...++|+.+.+- ....+++|++|.+--.-.+.+-.
T Consensus 547 d~LllfTs~Grv~~l~~~~IP~~~r~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 547 DYLLFFTNRGKVYWLKVYQIPEASRTAKGK--PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CeEEEEeCCCcEEEEEhhhCcCCCcCCCCc--CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 334455 89999998433221111111111 01112345555677776652 23567889999877665433211
Q ss_pred ccCCCCCCceecCEE-ecccCCcceEEEE--ccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCE
Q 016480 195 CGHRDTNRPIFRPRL-VEALKGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (389)
Q Consensus 195 lG~~~~~~~~~~p~~-v~~~~~~~i~~i~--~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 271 (389)
... .... +..-.+..++.+. ....+.+++|++|++|.+-...--..|... ....+-.+...++|
T Consensus 625 ~~r--------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~~~E~V 691 (800)
T TIGR01063 625 IRS--------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLKNEDFV 691 (800)
T ss_pred hcc--------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCCCCCEE
Confidence 000 0000 0001122334332 234567889999999988665443333221 12222234444677
Q ss_pred EEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE--ecCCeEEEEecCCcEEEE
Q 016480 272 VQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALDSSGYVYTW 347 (389)
Q Consensus 272 ~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~--~G~~hs~alt~~G~v~~w 347 (389)
+.+.+- ..+.+++|++|.+.-.=..++-....+ ..-...-.+...+..++.+. -.....++++++|.+.-+
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEe
Confidence 776653 346788888887765543332111110 00111111211112344332 234457888999988877
Q ss_pred eCCC
Q 016480 348 GKGY 351 (389)
Q Consensus 348 G~n~ 351 (389)
-.++
T Consensus 767 ~~~e 770 (800)
T TIGR01063 767 SVQD 770 (800)
T ss_pred eHhh
Confidence 6544
No 85
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.38 E-value=95 Score=22.79 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.0
Q ss_pred cCCcceEEEEccCceEEEEeeCC
Q 016480 213 LKGVPCKQVTAGLNFTGFLTIRG 235 (389)
Q Consensus 213 ~~~~~i~~i~~G~~hs~~lt~~G 235 (389)
.++.+|+++..|..++++.+++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44778999999999999999998
No 86
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=22.79 E-value=5.2e+02 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=12.5
Q ss_pred ceEEEEECCCcEEEEeC
Q 016480 279 SYMLAVTGNGVVYSFGS 295 (389)
Q Consensus 279 ~h~~~lt~~G~vy~wG~ 295 (389)
--.++++.+|+||+.-.
T Consensus 186 pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEBTTS-EEEEEE
T ss_pred CCcceEcCCCCEEEEEc
Confidence 45788999999998643
No 87
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.77 E-value=9.5e+02 Score=25.65 Aligned_cols=152 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred eEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCC
Q 016480 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (389)
Q Consensus 175 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~ 254 (389)
++++|++|-|-.--...+..-+..-.......- ...+....+.+++|++|++|.+-.++ .....
T Consensus 497 ~VilTk~G~IKr~~~~~~~~saikLKegD~L~~-----------~~~~~t~d~LllfTs~Gr~yrf~v~e-----IP~GR 560 (735)
T TIGR01062 497 TIILSKMGWVRSAKGHDIDLSTLKYKAGDSEKA-----------IIEGKSNQKVVFIDSTGRSYALDPDN-----LPSAR 560 (735)
T ss_pred EEEEecCCEEEeccccccchhccCcCCCCeEEE-----------EEEecCCCEEEEEECCCeEEEEEhHh-----cCcCc
Q ss_pred CCCCCeee-cCCCCCCCEEEEEecCce--EEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEec
Q 016480 255 DRPTPKSI-APLEEVGSVVQIAAGPSY--MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG 331 (389)
Q Consensus 255 ~~~~p~~v-~~~~~~~~i~~I~~G~~h--~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G 331 (389)
....|... -.+.+.+.|+.+.+.... .+++|+.|..+-.-.+++-....+.......+..-... .+..+.-.
T Consensus 561 ~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~d~lv-----~v~~v~~~ 635 (735)
T TIGR01062 561 GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVI-----APLPVNGD 635 (735)
T ss_pred cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCCCEEE-----EEEEEcCC
Q ss_pred CCeEEEEecCCcEEEE
Q 016480 332 DEHVVALDSSGYVYTW 347 (389)
Q Consensus 332 ~~hs~alt~~G~v~~w 347 (389)
..+.++++++|++..+
T Consensus 636 dd~V~liT~~GrlLrf 651 (735)
T TIGR01062 636 SDMIAAITEAGRMLVF 651 (735)
T ss_pred CCEEEEEeCCCcEEEE
No 88
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=22.16 E-value=1.1e+03 Score=26.13 Aligned_cols=128 Identities=11% Similarity=0.069 Sum_probs=63.6
Q ss_pred CcEEEEecCCee--EEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeec-CC-CCCCEEEEEcCC-----CeeEEEEcC
Q 016480 112 GNMQITTGRYHT--LLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN-FP-SAAHVVQVSASE-----NHAAFVLQS 181 (389)
Q Consensus 112 ~i~~i~~G~~h~--~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~-~~-~~~~i~~i~~G~-----~h~~~lt~~ 181 (389)
.+.++.....|. +++ +.|++|..=...--........... ...++ +. ...+|+.+.+-. .+.+++|++
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I--~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERL--DEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEH--HHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 355555544443 344 9999998754422111111111100 01111 21 245777776653 246888999
Q ss_pred CcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC-----ceEEEEeeCCcEEEeeCCCCcccc
Q 016480 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLG 249 (389)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~n~~gqlG 249 (389)
|.|.-.=...+-- ....-.-+..-.+..++.+.... .+.+++|++|.+.-+-.+.--.+|
T Consensus 631 G~VKrt~L~ef~~--------~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 631 GGIKKTSLDKFVT--------NYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred CeEEEEehhhccc--------cccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 9988776443210 01111122222344555554432 357888999988877654443333
No 89
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.97 E-value=1.8e+02 Score=25.86 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=37.1
Q ss_pred EEEecCCeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCe--eEEEEcCCcEEEEeCC
Q 016480 115 QITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH--AAFVLQSGQVFTCGDN 190 (389)
Q Consensus 115 ~i~~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h--~~~lt~~G~vy~wG~n 190 (389)
+..++....+++ .+|.||+|=.|.+|++-.- +......-..-|..|... .+.-..+|+++.|-.-
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~-----------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR-----------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHHHh-----------hhcccccceeccccccccceeEEeccCCceeeeccc
Confidence 344455555555 9999999999977764321 111111122334445553 2333467888888644
Q ss_pred CC
Q 016480 191 SS 192 (389)
Q Consensus 191 ~~ 192 (389)
.+
T Consensus 133 p~ 134 (238)
T KOG2444|consen 133 PN 134 (238)
T ss_pred cC
Confidence 43
No 90
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.79 E-value=1.6e+02 Score=16.28 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=12.9
Q ss_pred eeEEEEcCCcEEEEeCC
Q 016480 174 HAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 174 h~~~lt~~G~vy~wG~n 190 (389)
|.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56788888998887644
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.73 E-value=7.8e+02 Score=24.27 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=42.2
Q ss_pred ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeE--EEEecCCcEEEEeC
Q 016480 279 SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHV--VALDSSGYVYTWGK 349 (389)
Q Consensus 279 ~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs--~alt~~G~v~~wG~ 349 (389)
.+++++-.||-+|+-|.-+ |++-. -+...+..+..++....+|+.|+.+.+-. +.-.+|+.|..|--
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vki---wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKI---WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEE---EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 6788888899999888643 34321 12223444444544445788888886543 33467788999973
No 92
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.31 E-value=1e+03 Score=25.40 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=65.8
Q ss_pred cEEEEecCCe--eEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEE--cCCcEEEE
Q 016480 113 NMQITTGRYH--TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL--QSGQVFTC 187 (389)
Q Consensus 113 i~~i~~G~~h--~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt--~~G~vy~w 187 (389)
|-+++.+..- ++++ ..|.-.++|+..-|||..=.-.......+ +--...++..++-..+-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3444445332 3344 56888888888888887422111000000 0000125666666665444443 68888888
Q ss_pred eCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCc
Q 016480 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHG 246 (389)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~g 246 (389)
-..+..++- + --+.-++...++.+.-.+..+-.+-||+|-+|-...|-
T Consensus 378 n~~SgfC~v---------T--FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 378 NTQSGFCFV---------T--FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred eccCceEEE---------E--eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 765422111 0 01112344556777777777777889999999776553
No 93
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.29 E-value=1.1e+03 Score=25.93 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=33.7
Q ss_pred eEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCC
Q 016480 280 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 280 h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 350 (389)
+.+.|+++|++|. + . +.+.. .+++++..+.|-++.|.+-.+...=-+
T Consensus 593 ~~~GLs~~~~Ly~-n--~---------------~~la~------~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYA-N--S---------------RLLAS------NCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEE-C--C---------------EEEec------CCceEEEEcCEEEEEecCceEEEEECc
Confidence 6888999999996 1 1 12322 588888888888888888777766544
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=21.28 E-value=5.7e+02 Score=27.03 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=24.6
Q ss_pred cCCcceEEEEccCc----eEEEEeeCCcEEEeeC
Q 016480 213 LKGVPCKQVTAGLN----FTGFLTIRGHVHTCGS 242 (389)
Q Consensus 213 ~~~~~i~~i~~G~~----hs~~lt~~G~v~~wG~ 242 (389)
+....+..|+||.. .++++|..|.+.-+-.
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeech
Confidence 34456889999988 8999999999987743
No 95
>PF13964 Kelch_6: Kelch motif
Probab=20.95 E-value=1e+02 Score=19.56 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=13.5
Q ss_pred CeeEEEECCeEEEEecCCC
Q 016480 121 YHTLLISNSSVFSCGSSLC 139 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~~ 139 (389)
.|+++.-+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 3455448889999996544
No 96
>PHA02790 Kelch-like protein; Provisional
Probab=20.83 E-value=6.5e+02 Score=25.07 Aligned_cols=12 Identities=17% Similarity=0.363 Sum_probs=9.9
Q ss_pred EECCeEEEEecC
Q 016480 126 ISNSSVFSCGSS 137 (389)
Q Consensus 126 l~~g~vy~wG~n 137 (389)
.-+|+||+.|-.
T Consensus 360 ~~~g~IYviGG~ 371 (480)
T PHA02790 360 SINNVIYVIGGH 371 (480)
T ss_pred EECCEEEEecCc
Confidence 388999999864
Done!