Query 016480
Match_columns 389
No_of_seqs 470 out of 2046
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 14:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 1.8E-63 6E-68 481.5 31.8 310 74-388 66-382 (389)
2 4d9s_A UVB-resistance protein 100.0 9.4E-63 3.2E-67 478.9 36.4 310 74-388 29-342 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 3.2E-62 1.1E-66 472.7 29.2 310 74-388 14-330 (389)
4 1a12_A RCC1, regulator of chro 100.0 9.6E-61 3.3E-65 466.1 33.6 309 74-388 72-404 (413)
5 1a12_A RCC1, regulator of chro 100.0 1.9E-60 6.6E-65 464.0 34.5 309 74-388 21-350 (413)
6 4d9s_A UVB-resistance protein 100.0 6.5E-60 2.2E-64 458.9 34.4 294 75-373 82-379 (406)
7 3mvd_K Regulator of chromosome 100.0 1E-59 3.5E-64 460.3 36.0 305 74-388 88-413 (423)
8 3of7_A Regulator of chromosome 100.0 3.9E-59 1.3E-63 461.9 33.0 307 74-388 80-445 (473)
9 3mvd_K Regulator of chromosome 100.0 1.3E-57 4.4E-62 445.4 36.5 303 74-388 37-359 (423)
10 3of7_A Regulator of chromosome 100.0 5E-58 1.7E-62 454.0 31.9 305 76-388 25-390 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 5.5E-48 1.9E-52 356.2 24.4 231 80-388 2-232 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.8E-47 6.1E-52 352.8 26.2 231 74-388 37-267 (282)
13 1p22_A F-BOX/WD-repeat protein 98.3 0.00028 9.6E-09 67.7 25.0 188 112-349 175-363 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 98.1 0.0011 3.6E-08 63.7 23.6 186 112-350 161-347 (445)
15 3v7d_B Cell division control p 97.8 0.0052 1.8E-07 59.0 23.6 200 112-351 164-381 (464)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 96.9 0.0003 1E-08 46.3 1.3 36 8-45 7-42 (53)
17 4gbf_A Phikz131; 7-bladed beta 96.7 0.0033 1.1E-07 54.6 6.6 71 164-248 310-380 (400)
18 4gbf_A Phikz131; 7-bladed beta 96.5 0.0046 1.6E-07 53.7 6.5 72 216-301 309-380 (400)
19 2zwa_A Leucine carboxyl methyl 94.0 0.8 2.7E-05 46.7 14.2 17 333-349 657-673 (695)
20 1p22_A F-BOX/WD-repeat protein 93.2 5.4 0.00019 37.3 26.4 189 112-350 135-324 (435)
21 2ovr_B FBW7, F-BOX/WD repeat p 93.2 5.6 0.00019 37.2 26.2 188 113-350 202-390 (445)
22 3l2o_B F-box only protein 4; s 93.1 0.015 5E-07 52.3 -0.4 35 9-45 4-38 (312)
23 1k3i_A Galactose oxidase precu 91.7 12 0.0004 37.5 22.3 105 122-242 190-305 (656)
24 2zwa_A Leucine carboxyl methyl 90.9 12 0.00041 37.9 18.3 63 172-243 441-509 (695)
25 3k26_A Polycomb protein EED; W 89.2 12 0.0004 33.3 16.6 200 127-351 93-318 (366)
26 2xyi_A Probable histone-bindin 86.8 20 0.00068 33.3 22.5 210 113-350 184-409 (430)
27 2e31_A FBS1, F-box only protei 86.5 0.15 5.2E-06 46.0 0.4 36 8-45 49-85 (297)
28 1gxr_A ESG1, transducin-like e 83.7 21 0.00073 31.0 22.4 157 117-296 8-171 (337)
29 1gxr_A ESG1, transducin-like e 79.8 30 0.001 30.1 23.6 154 110-296 51-213 (337)
30 2ast_B S-phase kinase-associat 79.7 0.66 2.3E-05 42.1 1.8 36 8-45 7-42 (336)
31 3mmy_A MRNA export factor; mRN 75.9 41 0.0014 29.6 25.4 191 111-350 40-246 (368)
32 4g56_B MGC81050 protein; prote 75.4 46 0.0016 29.9 25.6 191 110-349 94-299 (357)
33 3jrp_A Fusion protein of prote 74.2 46 0.0016 29.4 24.1 196 112-350 13-239 (379)
34 1xip_A Nucleoporin NUP159; bet 74.2 56 0.0019 30.3 13.7 65 218-296 90-154 (388)
35 3odt_A Protein DOA1; ubiquitin 74.1 41 0.0014 28.8 25.7 184 111-350 105-295 (313)
36 3ii7_A Kelch-like protein 7; p 73.8 45 0.0015 29.1 16.7 18 121-138 48-65 (306)
37 4asc_A Kelch repeat and BTB do 73.4 47 0.0016 29.2 12.8 18 225-243 140-157 (315)
38 3mkq_A Coatomer beta'-subunit; 73.0 81 0.0028 31.6 21.9 149 112-297 99-259 (814)
39 3p6j_A De novo designed beta-t 72.4 19 0.00065 28.3 8.2 109 214-346 28-138 (142)
40 3jro_A Fusion protein of prote 70.9 92 0.0032 31.4 21.9 155 164-350 55-237 (753)
41 1suu_A DNA gyrase subunit A; t 68.3 66 0.0023 28.7 19.2 174 168-356 54-236 (312)
42 2woz_A Kelch repeat and BTB do 67.7 56 0.0019 28.7 11.6 17 225-242 150-166 (318)
43 4gqb_B Methylosome protein 50; 67.0 71 0.0024 28.6 25.7 191 110-349 82-287 (344)
44 3uc1_A DNA gyrase subunit A; D 66.3 75 0.0026 28.6 18.6 165 168-347 49-224 (327)
45 4aez_A CDC20, WD repeat-contai 66.3 77 0.0026 28.7 25.5 148 113-297 96-248 (401)
46 3no0_A DNA gyrase subunit A; D 65.7 70 0.0024 28.0 20.9 211 113-355 26-250 (276)
47 1k3i_A Galactose oxidase precu 65.6 18 0.00063 36.0 8.6 57 279-349 245-305 (656)
48 1r5m_A SIR4-interacting protei 63.9 81 0.0028 28.2 18.7 246 66-347 148-421 (425)
49 3i2n_A WD repeat-containing pr 63.8 74 0.0025 27.7 22.8 195 110-350 65-290 (357)
50 1zgk_A Kelch-like ECH-associat 62.7 34 0.0012 30.1 9.1 17 121-137 63-79 (308)
51 3no0_A DNA gyrase subunit A; D 62.3 81 0.0028 27.6 17.4 161 164-349 25-194 (276)
52 3zwl_B Eukaryotic translation 62.3 80 0.0027 27.5 24.8 159 112-297 34-206 (369)
53 2vpj_A Kelch-like protein 12; 61.2 47 0.0016 28.8 9.7 18 121-138 55-72 (301)
54 3ii7_A Kelch-like protein 7; p 59.4 38 0.0013 29.6 8.8 17 121-137 94-110 (306)
55 3odt_A Protein DOA1; ubiquitin 59.3 83 0.0028 26.7 22.6 145 112-294 20-171 (313)
56 4aez_A CDC20, WD repeat-contai 58.6 1.1E+02 0.0036 27.7 24.3 188 112-350 178-379 (401)
57 3zwl_B Eukaryotic translation 55.4 1E+02 0.0036 26.7 21.1 66 112-191 76-151 (369)
58 3mmy_A MRNA export factor; mRN 53.5 1.1E+02 0.0038 26.5 17.5 148 163-350 40-198 (368)
59 3sfz_A APAF-1, apoptotic pepti 52.6 2.4E+02 0.0081 30.0 18.3 156 164-351 1046-1207(1249)
60 2p1m_B Transport inhibitor res 52.4 3.3 0.00011 40.7 0.3 33 9-43 5-38 (594)
61 3no2_A Uncharacterized protein 51.6 1.2E+02 0.004 26.2 19.9 163 164-357 89-267 (276)
62 3uc1_A DNA gyrase subunit A; D 49.7 1.5E+02 0.005 26.7 24.5 211 119-349 52-277 (327)
63 2xn4_A Kelch-like protein 2; s 49.7 74 0.0025 27.5 9.0 17 121-137 101-117 (302)
64 4a11_B DNA excision repair pro 49.0 1.4E+02 0.0048 26.4 23.1 209 112-351 45-276 (408)
65 3f3f_A Nucleoporin SEH1; struc 48.0 1.3E+02 0.0044 25.6 25.2 119 112-243 13-142 (351)
66 1zi0_A DNA gyrase subunit A; b 47.6 1.5E+02 0.0051 26.2 18.3 165 168-347 49-222 (307)
67 3mkq_A Coatomer beta'-subunit; 46.7 2.3E+02 0.0079 28.2 24.0 173 127-350 75-258 (814)
68 3jrp_A Fusion protein of prote 46.2 1.5E+02 0.0051 25.8 26.6 200 111-350 56-286 (379)
69 3ogk_B Coronatine-insensitive 45.4 5.5 0.00019 39.0 0.7 32 10-43 13-45 (592)
70 4g56_B MGC81050 protein; prote 44.6 1.7E+02 0.0058 26.0 25.9 188 112-351 141-343 (357)
71 2uvk_A YJHT; unknown function, 42.4 1.2E+02 0.0041 27.0 9.4 18 225-243 110-127 (357)
72 4asc_A Kelch repeat and BTB do 41.0 1.2E+02 0.004 26.5 9.0 18 120-137 140-157 (315)
73 4ery_A WD repeat-containing pr 40.5 1.7E+02 0.0059 24.9 21.8 146 112-296 25-179 (312)
74 3jro_A Fusion protein of prote 40.0 3E+02 0.01 27.5 23.5 155 111-297 54-238 (753)
75 3f3f_A Nucleoporin SEH1; struc 39.2 1.8E+02 0.0061 24.7 24.8 77 111-191 58-143 (351)
76 1yfq_A Cell cycle arrest prote 39.0 1.9E+02 0.0064 24.9 22.3 202 112-352 13-226 (342)
77 1wp5_A Topoisomerase IV; broke 38.8 2.1E+02 0.0073 25.5 18.6 163 166-342 44-216 (323)
78 1rwi_B Serine/threonine-protei 38.3 1.7E+02 0.0058 24.2 13.9 178 122-352 70-255 (270)
79 1zvt_A Topoisomerase IV subuni 38.3 1.9E+02 0.0065 24.8 11.5 125 168-303 40-169 (256)
80 3p6j_A De novo designed beta-t 36.6 1.5E+02 0.0051 23.1 11.8 110 105-239 24-138 (142)
81 1pgu_A Actin interacting prote 36.5 2.8E+02 0.0096 26.2 21.2 110 164-296 208-327 (615)
82 4ery_A WD repeat-containing pr 36.4 2E+02 0.0069 24.5 22.8 148 164-348 151-309 (312)
83 3l6v_A GYRA, DNA gyrase subuni 36.0 2.6E+02 0.0087 25.6 19.3 162 166-342 51-256 (370)
84 1sq9_A Antiviral protein SKI8; 35.9 2.3E+02 0.0078 25.0 20.6 164 163-350 122-321 (397)
85 2pm9_A Protein WEB1, protein t 31.7 2.7E+02 0.0093 24.6 20.5 200 112-352 115-338 (416)
86 3v7d_B Cell division control p 30.4 3.1E+02 0.011 24.9 27.4 148 164-351 272-421 (464)
87 2xyi_A Probable histone-bindin 30.3 3.1E+02 0.011 24.8 25.0 212 108-351 126-353 (430)
88 2woz_A Kelch repeat and BTB do 28.1 1.3E+02 0.0044 26.2 7.0 17 121-137 102-118 (318)
89 2aq5_A Coronin-1A; WD40 repeat 26.9 3.4E+02 0.011 24.1 22.5 154 116-296 40-206 (402)
90 3sjl_D Methylamine dehydrogena 25.0 4E+02 0.014 24.4 11.9 130 164-301 71-212 (386)
91 3k26_A Polycomb protein EED; W 24.3 3.4E+02 0.011 23.3 25.4 216 111-348 116-363 (366)
92 3fvz_A Peptidyl-glycine alpha- 24.3 3.5E+02 0.012 23.4 16.6 22 170-191 23-44 (329)
93 4gga_A P55CDC, cell division c 23.9 4E+02 0.014 23.9 21.7 141 119-296 114-260 (420)
94 1suu_A DNA gyrase subunit A; t 23.4 3.8E+02 0.013 23.6 23.5 217 116-352 54-284 (312)
95 2pm9_A Protein WEB1, protein t 23.0 3.9E+02 0.013 23.5 20.6 202 111-349 68-292 (416)
96 4gga_A P55CDC, cell division c 23.0 4.1E+02 0.014 23.8 22.3 49 286-348 342-392 (420)
97 3gre_A Serine/threonine-protei 22.8 4.1E+02 0.014 23.7 17.7 160 112-296 65-244 (437)
98 1yfq_A Cell cycle arrest prote 22.8 3.5E+02 0.012 22.9 21.3 208 111-350 57-281 (342)
99 3vl1_A 26S proteasome regulato 22.7 4E+02 0.014 23.6 23.1 184 114-347 62-274 (420)
100 1zi0_A DNA gyrase subunit A; b 22.3 4E+02 0.014 23.4 23.4 217 116-352 49-278 (307)
101 1sq9_A Antiviral protein SKI8; 21.9 4E+02 0.014 23.3 20.9 110 164-296 188-321 (397)
102 1zvu_A Topoisomerase IV subuni 20.8 6.5E+02 0.022 25.3 11.3 125 168-303 510-639 (716)
103 1zvt_A Topoisomerase IV subuni 20.7 3.9E+02 0.014 22.7 15.5 153 175-352 5-164 (256)
104 1k8k_C P40, ARP2/3 complex 41 20.4 4.1E+02 0.014 22.8 26.8 205 112-350 54-273 (372)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-63 Score=481.49 Aligned_cols=310 Identities=28% Similarity=0.425 Sum_probs=282.9
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeecCCC----cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCC
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET 148 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~----i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~ 148 (389)
+.+.++|+||.||.+..++++.........|..++.+.. +++|+||..|+++| ++|+||+||.|.+||||.+...
T Consensus 66 ~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~ 145 (389)
T 3kci_A 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS 145 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred EEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc
Confidence 557889999999999999998665555556777666554 47899999999999 9999999999999999999876
Q ss_pred ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--c
Q 016480 149 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--N 226 (389)
Q Consensus 149 ~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~ 226 (389)
. ...|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..+.+.+|++|+||. .
T Consensus 146 ~-~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~~~~~v~~ia~G~g~~ 223 (389)
T 3kci_A 146 P-CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVEALQGHRVVDIACGSGDA 223 (389)
T ss_dssp C-EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECCSSC
T ss_pred c-CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEecccCCCeEEEEEEcCCCc
Confidence 5 45677777766669999999999999999999999999999999999887 557889999999999999999995 8
Q ss_pred eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCC
Q 016480 227 FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (389)
Q Consensus 227 hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~ 306 (389)
|+++|+++|+||+||.|.+||||.+.......|++++.+.. .+|++|+||.+|++||+++|+||+||.|.+||||++..
T Consensus 224 ~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp EEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred EEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 99999999999999999999999999888899999988866 57999999999999999999999999999999999999
Q ss_pred CCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCe
Q 016480 307 HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNF 386 (389)
Q Consensus 307 ~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~ 386 (389)
.....|++|+.+ .+.+|++|+||.+|++||+++|+||+||+|.+||||+|+.+....|++|+.+.+.+|++|+||..|
T Consensus 303 ~~~~~P~~v~~l--~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~h 380 (389)
T 3kci_A 303 DHVRRPRQVQGL--QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAH 380 (389)
T ss_dssp CCEEEEEECGGG--TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTE
T ss_pred ccccCCeEeccC--CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCc
Confidence 888899999877 455899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 016480 387 YY 388 (389)
Q Consensus 387 s~ 388 (389)
|+
T Consensus 381 t~ 382 (389)
T 3kci_A 381 TL 382 (389)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=9.4e-63 Score=478.87 Aligned_cols=310 Identities=24% Similarity=0.336 Sum_probs=283.3
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeecCC--CcEEEEecCCeeEEE-ECC-eEEEEecCCCCccCCCCCCc
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSA--GNMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETT 149 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~--~i~~i~~G~~h~~~l-~~g-~vy~wG~n~~gqlG~~~~~~ 149 (389)
..+.++|+||+||.+..++++.........|..++.+. +|++|+||..|+++| ++| +||+||.|.+||||.+....
T Consensus 29 ~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~ 108 (406)
T 4d9s_A 29 VALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD 108 (406)
T ss_dssp EEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCC
T ss_pred EEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCc
Confidence 55677999999999999999877666566677776554 699999999999999 765 99999999999999988765
Q ss_pred eeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEE
Q 016480 150 QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTG 229 (389)
Q Consensus 150 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~ 229 (389)
...|.++......+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..+.+.+|++|+||.+|++
T Consensus 109 -~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~i~~va~G~~hs~ 186 (406)
T 4d9s_A 109 -LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT-EDSLVPQKIQAFEGIRIKMVAAGAEHTA 186 (406)
T ss_dssp -EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEE
T ss_pred -cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC-CCcccceEecccCCCcEEEEecCCCeEE
Confidence 55677777777779999999999999999999999999999999999887 4578899999999999999999999999
Q ss_pred EEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCc
Q 016480 230 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDE 309 (389)
Q Consensus 230 ~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~ 309 (389)
+|+++|+||+||.|.+||||.+.......|+++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||+++..+.
T Consensus 187 alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 187 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp EEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT-CCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred EEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCC-ceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence 99999999999999999999999988899999988766 58999999999999999999999999999999999999888
Q ss_pred cccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCeee
Q 016480 310 LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 310 ~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
..|++++.+. +.+|++|+||.+|++||+++|+||+||+|.+||||+++......|++|+.+.+.+|++|+||.+||+
T Consensus 266 ~~p~~v~~~~--~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~ 342 (406)
T 4d9s_A 266 LIPHKLEALS--NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 342 (406)
T ss_dssp EEEEECGGGT--TSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEE
T ss_pred cccEEecccC--CCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEE
Confidence 9999998774 4579999999999999999999999999999999999999999999998888889999999999986
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-62 Score=472.69 Aligned_cols=310 Identities=25% Similarity=0.398 Sum_probs=272.3
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeec--CCCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCce
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVET--SAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~--~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~ 150 (389)
...+++|+||.||.|..++++.........|..++. ..+|++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 14 ~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~- 92 (389)
T 3kci_A 14 LYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES- 92 (389)
T ss_dssp -------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC-
T ss_pred eeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC-
Confidence 567788999999999999998544443344544443 33689999999999999 99999999999999999998765
Q ss_pred eeeeeeecCCCCC--CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceE
Q 016480 151 CVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT 228 (389)
Q Consensus 151 ~~~p~~i~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs 228 (389)
...|++++..... ++++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|++++.+.+.+|++|+||.+|+
T Consensus 93 ~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~va~G~~hs 171 (389)
T 3kci_A 93 VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIESLRGIEVVDVAAGGAHS 171 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEecccCCCeEEEEEeCcCeE
Confidence 4567777655544 5588999999999999999999999999999999887 457889999999999999999999999
Q ss_pred EEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCC
Q 016480 229 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 306 (389)
Q Consensus 229 ~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~ 306 (389)
++|+++|+||+||.|.+||||.++......|++++.+.. .+|++|+||. .|+++|+++|+||+||.|.+||||.+..
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 999999999999999999999999998899999988876 5899999995 8999999999999999999999999998
Q ss_pred CCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCe
Q 016480 307 HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNF 386 (389)
Q Consensus 307 ~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~ 386 (389)
.....|++++.+ .+.+|++|+||.+|++||+++|+||+||.|.+||||+++......|++|+.+.+.+|++|+||..|
T Consensus 251 ~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h 328 (389)
T 3kci_A 251 DGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH 328 (389)
T ss_dssp CCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE
T ss_pred CCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe
Confidence 888899999877 455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 016480 387 YY 388 (389)
Q Consensus 387 s~ 388 (389)
++
T Consensus 329 ~~ 330 (389)
T 3kci_A 329 CV 330 (389)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9.6e-61 Score=466.10 Aligned_cols=309 Identities=21% Similarity=0.266 Sum_probs=270.0
Q ss_pred cCccccceeeeeecCCccccceeec--ccccccceeecCCCcEEEEecCCeeEEE-ECCeEEEEec--CCCCccCCCCCC
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQ--SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPET 148 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~--~~~~~p~~v~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~--n~~gqlG~~~~~ 148 (389)
..+.++|+||.||.+..++++.... .....|..++...+|++|+||..|+++| ++|+||+||. |.+||||.+...
T Consensus 72 ~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~ 151 (413)
T 1a12_A 72 VCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM 151 (413)
T ss_dssp EEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBT
T ss_pred EEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcc
Confidence 5677899999999999999986544 2344677776666899999999999999 9999999999 899999998776
Q ss_pred ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCC----------ceecCEEeccc-----
Q 016480 149 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR----------PIFRPRLVEAL----- 213 (389)
Q Consensus 149 ~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~----------~~~~p~~v~~~----- 213 (389)
.....|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ....|+.+...
T Consensus 152 ~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~ 229 (413)
T 1a12_A 152 KKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229 (413)
T ss_dssp BCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCC
T ss_pred ccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeecccccc
Confidence 544445555 4556999999999999999999999999999999999875321 23567777653
Q ss_pred CCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCC-CCEEEEEecCceEEEEECCCcEEE
Q 016480 214 KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGVVYS 292 (389)
Q Consensus 214 ~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~I~~G~~h~~~lt~~G~vy~ 292 (389)
...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|+++..+... .+|++|+||.+|+++|+++|+||+
T Consensus 230 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~ 309 (413)
T 1a12_A 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309 (413)
T ss_dssp SBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEE
Confidence 4568999999999999999999999999999999999998888899999877541 359999999999999999999999
Q ss_pred EeCCCCCccCCC-CCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecC
Q 016480 293 FGSGSNFCLGHG-EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 371 (389)
Q Consensus 293 wG~n~~gqLG~g-~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 371 (389)
||.|.+||||.+ +......|++|+.+. +|++|+||.+|++||+++|+||+||.|.+||||+|+.++...|++|+.
T Consensus 310 wG~n~~GqLG~g~~~~~~~~P~~v~~l~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~ 385 (413)
T 1a12_A 310 LGRAEYGRLGLGEGAEEKSIPTLISRLP----AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385 (413)
T ss_dssp EECCGGGTTCSCTTCCCEEEEEECCSSS----SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred eeCCCCCccCCCCCCccccCCEEecccC----ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence 999999999999 456677899998764 799999999999999999999999999999999999999999999975
Q ss_pred --CCCCcEEEEEEecCeee
Q 016480 372 --LKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 372 --~~~~~i~~i~~G~~~s~ 388 (389)
+++.+|++|+||..||+
T Consensus 386 ~~~~~~~v~~v~~G~~ht~ 404 (413)
T 1a12_A 386 KQLENRVVLSVSSGGQHTV 404 (413)
T ss_dssp TTTTTEEEEEEEECSSEEE
T ss_pred cccCCCeEEEEeeCCCcEE
Confidence 67889999999999996
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.9e-60 Score=463.96 Aligned_cols=309 Identities=24% Similarity=0.341 Sum_probs=266.7
Q ss_pred cCccccceeeeeecCCccccceeeccc-ccccceeecCCCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCC-ce
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSV-EHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET-TQ 150 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~-~~~p~~v~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~-~~ 150 (389)
....++|+||.||.+..++++...... ...|..++...+|++|+||..|+++| ++|+||+||.|.+||||.+... ..
T Consensus 21 ~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 100 (413)
T 1a12_A 21 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS 100 (413)
T ss_dssp TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred eeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCcc
Confidence 566778999999999999998654432 35678888888999999999999999 9999999999999999998763 22
Q ss_pred eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeC--CCCCcccCCCCCCceecCEEecccCCcceEEEEccCceE
Q 016480 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT 228 (389)
Q Consensus 151 ~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs 228 (389)
...|.++.++ .+|++|+||.+|+++|+++|+||+||. |.+||||.+........|.++ +...+|++|+||.+|+
T Consensus 101 ~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs 176 (413)
T 1a12_A 101 EMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHL 176 (413)
T ss_dssp GGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEE
T ss_pred ccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceE
Confidence 3456666553 389999999999999999999999999 999999998776556668777 4567899999999999
Q ss_pred EEEeeCCcEEEeeCCCCccccCCCCCC-----------CCCCeeecCCC----CCCCEEEEEecCceEEEEECCCcEEEE
Q 016480 229 GFLTIRGHVHTCGSNTHGQLGHGDTLD-----------RPTPKSIAPLE----EVGSVVQIAAGPSYMLAVTGNGVVYSF 293 (389)
Q Consensus 229 ~~lt~~G~v~~wG~n~~gqlG~~~~~~-----------~~~p~~v~~~~----~~~~i~~I~~G~~h~~~lt~~G~vy~w 293 (389)
++|+++|+||+||.|.+||||.+.... ...|+.+.... ...+|++|+||.+|+++|+++|+||+|
T Consensus 177 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~w 256 (413)
T 1a12_A 177 VMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 256 (413)
T ss_dssp EEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred EEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEE
Confidence 999999999999999999999875422 24676665431 225899999999999999999999999
Q ss_pred eCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCC-CCCCeecceEecCC
Q 016480 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG-DEIDKTLPEPLSSL 372 (389)
Q Consensus 294 G~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g-~~~~~~~P~~v~~~ 372 (389)
|.|.+||||.+.......|++|+.+.....+|++|+||.+|++||+++|+||+||.|.+||||+| +......|++|+.+
T Consensus 257 G~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l 336 (413)
T 1a12_A 257 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL 336 (413)
T ss_dssp ECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS
T ss_pred eCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEeccc
Confidence 99999999999988888999998875433579999999999999999999999999999999999 56778899999888
Q ss_pred CCCcEEEEEEecCeee
Q 016480 373 KSHLAVQVKFIRNFYY 388 (389)
Q Consensus 373 ~~~~i~~i~~G~~~s~ 388 (389)
. +|++|+||.+||+
T Consensus 337 ~--~v~~v~~G~~hs~ 350 (413)
T 1a12_A 337 P--AVSSVACGASVGY 350 (413)
T ss_dssp S--SEEEEEECSSEEE
T ss_pred C--ceeEEEECcceEE
Confidence 6 7999999999986
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=6.5e-60 Score=458.93 Aligned_cols=294 Identities=26% Similarity=0.358 Sum_probs=264.5
Q ss_pred Ccccc-ceeeeeecCCccccceeecccccccceeecCC--CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCce
Q 016480 75 SRNVQ-IELLNRCNGNWKRVLRFLQSVEHSSDIVETSA--GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (389)
Q Consensus 75 ~~~~~-g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~--~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~ 150 (389)
.+.++ ++||.||.+.+++++.........|..++.+. +|++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 82 al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~- 160 (406)
T 4d9s_A 82 AYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED- 160 (406)
T ss_dssp EEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC-
T ss_pred EEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC-
Confidence 34444 59999999999999866555445566665544 699999999999999 99999999999999999998776
Q ss_pred eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEE
Q 016480 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGF 230 (389)
Q Consensus 151 ~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~ 230 (389)
...|+++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.+.+|++|+||.+|+++
T Consensus 161 ~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 161 SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-TDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS-CCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC-CCcCccEEecccCCceEEEEEECCCcEEE
Confidence 45677777766679999999999999999999999999999999999876 45778999998888899999999999999
Q ss_pred EeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCcc
Q 016480 231 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL 310 (389)
Q Consensus 231 lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~ 310 (389)
|+++|+||+||.|.+||||.++......|++++.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.++..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred EcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCC-CCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCc
Confidence 9999999999999999999999988899999998876 579999999999999999999999999999999999998888
Q ss_pred ccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCC
Q 016480 311 QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK 373 (389)
Q Consensus 311 ~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~ 373 (389)
.|++++.+. ..+|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|++|+.+.
T Consensus 319 ~p~~v~~~~--~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 319 SPVQVRFPD--DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp EEEEECCGG--GCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred cCEEEeccC--CCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 999998653 3489999999999999999999999999999999999999999999998653
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1e-59 Score=460.31 Aligned_cols=305 Identities=20% Similarity=0.259 Sum_probs=270.7
Q ss_pred cCccccceeeeeecCCccccceeeccc--ccccceeecCCCcEEEEecCCeeEEE-ECCeEEEEec--CCCCccCCCCCC
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSV--EHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPET 148 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~--~~~p~~v~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~--n~~gqlG~~~~~ 148 (389)
..+.++|+||.||.+..++++...... ...|..++...+|++|+||..|+++| ++|+||+||. |.+||||.+...
T Consensus 88 ~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~ 167 (423)
T 3mvd_K 88 LVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG 167 (423)
T ss_dssp EEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB
T ss_pred EEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC
Confidence 567889999999999999998665432 45678888778899999999999999 9999999999 999999998776
Q ss_pred ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCC----------CceecCEEecccCCcce
Q 016480 149 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN----------RPIFRPRLVEALKGVPC 218 (389)
Q Consensus 149 ~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~----------~~~~~p~~v~~~~~~~i 218 (389)
. .+.|+.++...+|++|+||.+|+++|+++|+||+||.|.+||||.+... .....|.++......+|
T Consensus 168 ~---~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v 244 (423)
T 3mvd_K 168 N---KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244 (423)
T ss_dssp C---EEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCE
T ss_pred C---CceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccE
Confidence 5 4677777777799999999999999999999999999999999997652 34568999988888899
Q ss_pred EEEEccCceEEEE-eeCCcEEEeeCCCCccccCCCCCCC--CCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeC
Q 016480 219 KQVTAGLNFTGFL-TIRGHVHTCGSNTHGQLGHGDTLDR--PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (389)
Q Consensus 219 ~~i~~G~~hs~~l-t~~G~v~~wG~n~~gqlG~~~~~~~--~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~ 295 (389)
++|+||.+|++++ +++|+||+||.|.+||||.+..... ..|.++. + .+|++|+||.+|+++|+++|+||+||.
T Consensus 245 ~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~---~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L---KDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C---CSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred EEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C---CCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence 9999999999999 6999999999999999999655443 4555554 2 589999999999999999999999999
Q ss_pred CCCCccCCCCCCC-ccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecC--C
Q 016480 296 GSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS--L 372 (389)
Q Consensus 296 n~~gqLG~g~~~~-~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--~ 372 (389)
|.+||||.++..+ ...|++++.+.. +|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|.. +
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~---~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~ 397 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTE---KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNT 397 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCS---CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTT
T ss_pred CCCCCCCCCCccccccCceEeccCCC---CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCccc
Confidence 9999999998765 458888887642 799999999999999999999999999999999999999999999985 7
Q ss_pred CCCcEEEEEEecCeee
Q 016480 373 KSHLAVQVKFIRNFYY 388 (389)
Q Consensus 373 ~~~~i~~i~~G~~~s~ 388 (389)
.+.+|++|+||.+||+
T Consensus 398 ~~~~v~~va~G~~ht~ 413 (423)
T 3mvd_K 398 QGKHMLLASGGGQHAI 413 (423)
T ss_dssp TTCCEEEEEECSSEEE
T ss_pred CCCEEEEEEECCCcEE
Confidence 7889999999999996
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-59 Score=461.94 Aligned_cols=307 Identities=22% Similarity=0.310 Sum_probs=258.5
Q ss_pred cCccccceeeeeecCCccccceeeccc-----------------------ccccceeec--------CCCcEEEEecCCe
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSV-----------------------EHSSDIVET--------SAGNMQITTGRYH 122 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~-----------------------~~~p~~v~~--------~~~i~~i~~G~~h 122 (389)
..+.++|+||+||.+..++++...... ...|..++. ..+|++|+||..|
T Consensus 80 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~h 159 (473)
T 3of7_A 80 LALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNM 159 (473)
T ss_dssp EEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSE
T ss_pred EEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCE
Confidence 556789999999999999998654332 345676664 3679999999999
Q ss_pred eEEE-ECCeEEEEec--CCCCccCCCCCC-ceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCC
Q 016480 123 TLLI-SNSSVFSCGS--SLCGVLGHGPET-TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHR 198 (389)
Q Consensus 123 ~~~l-~~g~vy~wG~--n~~gqlG~~~~~-~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~ 198 (389)
+++| ++|+||+||. |.+||||.+... .....|.+++.....+|++|+||..|+++|+++|+||+||.|.+||||.+
T Consensus 160 s~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~ 239 (473)
T 3of7_A 160 SCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRK 239 (473)
T ss_dssp EEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSC
T ss_pred EEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCC
Confidence 9999 9999999998 688999985443 23345666655555579999999999999999999999999999999998
Q ss_pred CCCC---ceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC----CCCCeeecCCCCCCCE
Q 016480 199 DTNR---PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSV 271 (389)
Q Consensus 199 ~~~~---~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~i 271 (389)
.... ....|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|+++..+.. .+|
T Consensus 240 ~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~-~~i 315 (473)
T 3of7_A 240 VMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN-VVI 315 (473)
T ss_dssp CCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTT-CCE
T ss_pred ccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCC-ccE
Confidence 6532 3456777643 5799999999999999999999999999999999987653 357888887765 589
Q ss_pred EEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCC--------------CccccEEeeccccCCccEEEEEecCCeEEE
Q 016480 272 VQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH--------------DELQPRAIQTFRRKGIHVVRVSAGDEHVVA 337 (389)
Q Consensus 272 ~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~--------------~~~~P~~i~~~~~~~~~v~~i~~G~~hs~a 337 (389)
++|+||.+|+++|+++|+||+||.|.+||||.+... ....|++++.+. +|++|+||.+|++|
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~----~v~~Ia~G~~hs~a 391 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP----KFKSVAAGSHHSVA 391 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC----CEEEEEECSSEEEE
T ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC----ceEEEEeCCCeEEE
Confidence 999999999999999999999999999999987531 123566665442 79999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCC-CCCeecceEec--CCCCCcEEEEEEecCeee
Q 016480 338 LDSSGYVYTWGKGYCGALGHGD-EIDKTLPEPLS--SLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 338 lt~~G~v~~wG~n~~GqLG~g~-~~~~~~P~~v~--~~~~~~i~~i~~G~~~s~ 388 (389)
|+++|+||+||.|.+||||+|+ .++...|++|+ .+.+.+|++|+||..||+
T Consensus 392 l~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~ 445 (473)
T 3of7_A 392 VAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSV 445 (473)
T ss_dssp EETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEE
T ss_pred EeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEE
Confidence 9999999999999999999999 78899999998 457789999999999997
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-57 Score=445.45 Aligned_cols=303 Identities=22% Similarity=0.291 Sum_probs=259.4
Q ss_pred cCccccceeeeeecCCccccceeec-ccccccceeecCCCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCc-e
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQ-SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-Q 150 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~-~~~~~p~~v~~~~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~-~ 150 (389)
....++|+||+||.+.+++++.... .....|..++.+.+|++|+||..|+++| ++|+||+||.|.+||||.+.... .
T Consensus 37 ~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 116 (423)
T 3mvd_K 37 KRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116 (423)
T ss_dssp CCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS
T ss_pred eeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc
Confidence 5678899999999999999986543 2344678888888999999999999999 99999999999999999987654 1
Q ss_pred eeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeC--CCCCcccCCCCCCceecCEEecccCCcceEEEEccCceE
Q 016480 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT 228 (389)
Q Consensus 151 ~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs 228 (389)
...|.++.++ .+|++|+||.+|+++|+++|+||+||. |.+||||.+... .. +.++..+.+.+|++|+||.+|+
T Consensus 117 ~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~-~~--~~p~~~~~~~~i~~va~G~~hs 191 (423)
T 3mvd_K 117 ESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG-NK--RTPIDLMEGTVCCSIASGADHL 191 (423)
T ss_dssp SSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB-CE--EEEEESSTTCCEEEEEECSSEE
T ss_pred ccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-CC--ceeeEecCCCcEEEEecCCCeE
Confidence 3355555543 489999999999999999999999999 999999998763 33 4444556778899999999999
Q ss_pred EEEeeCCcEEEeeCCCCccccCCCCC-----------CCCCCeeecCCCCCCCEEEEEecCceEEEE-ECCCcEEEEeCC
Q 016480 229 GFLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGVVYSFGSG 296 (389)
Q Consensus 229 ~~lt~~G~v~~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~~i~~I~~G~~h~~~l-t~~G~vy~wG~n 296 (389)
++|+++|+||+||.|.+||||.+... ....|.++..... .+|++|+||.+|++++ +++|+||+||.|
T Consensus 192 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~v~~wG~n 270 (423)
T 3mvd_K 192 VILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA-KPFEAIWATNYCTFMRESQTQVIWATGLN 270 (423)
T ss_dssp EEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC-CCEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC-ccEEEEEECCcEEEEEECCCCeEEEEeCC
Confidence 99999999999999999999997653 4568888876655 6899999999999999 699999999999
Q ss_pred CCCccCCCCCCCc--cccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCC-eecceEecCCC
Q 016480 297 SNFCLGHGEQHDE--LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLK 373 (389)
Q Consensus 297 ~~gqLG~g~~~~~--~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~~~ 373 (389)
.+||||.+..... ..|+++. + .+|++|+||.+|++||+++|+||+||+|.+||||+++... ...|++|+.+.
T Consensus 271 ~~gqlg~~~~~~~~~~~p~~~~-~----~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~ 345 (423)
T 3mvd_K 271 NFKQLAHETKGKEFALTPIKTE-L----KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT 345 (423)
T ss_dssp TTCTTSSCCTTCSEEEEEEEEC-C----CSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCC
T ss_pred CCCcCCCCCCCCceeeeeEEcC-C----CCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCC
Confidence 9999999655433 3566554 2 2799999999999999999999999999999999998755 57899999888
Q ss_pred CCcEEEEEEecCeee
Q 016480 374 SHLAVQVKFIRNFYY 388 (389)
Q Consensus 374 ~~~i~~i~~G~~~s~ 388 (389)
+ +|++|+||.+||+
T Consensus 346 ~-~v~~ia~G~~hs~ 359 (423)
T 3mvd_K 346 E-KIVSVGCGEVCSY 359 (423)
T ss_dssp S-CEEEEEEETTEEE
T ss_pred C-CEEEEEcCCCeEE
Confidence 7 9999999999986
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-58 Score=454.04 Aligned_cols=305 Identities=20% Similarity=0.257 Sum_probs=251.8
Q ss_pred ccccceeeeeecCCccccceeec---ccccccceeecC----CCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCC
Q 016480 76 RNVQIELLNRCNGNWKRVLRFLQ---SVEHSSDIVETS----AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPE 147 (389)
Q Consensus 76 ~~~~g~l~~~g~~~~~~~~~~~~---~~~~~p~~v~~~----~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~ 147 (389)
..++++||+||.+.+++++.... .....|.+++.+ .+|++|+||..|+++| ++|+||+||.|.+||||.+..
T Consensus 25 ~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~ 104 (473)
T 3of7_A 25 SVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTS 104 (473)
T ss_dssp CSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC
T ss_pred CCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCc
Confidence 34578899999998888875542 222345554443 4799999999999999 999999999999999999876
Q ss_pred Cce----------------------eeeeeeec---CC---CCCCEEEEEcCCCeeEEEEcCCcEEEEeC--CCCCcccC
Q 016480 148 TTQ----------------------CVSFTRIN---FP---SAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGH 197 (389)
Q Consensus 148 ~~~----------------------~~~p~~i~---~~---~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~ 197 (389)
... ...|.+++ ++ ...+|++|+||.+|+++|+++|+||+||. +.+||||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~ 184 (473)
T 3of7_A 105 NAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF 184 (473)
T ss_dssp ---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEES
T ss_pred ccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCC
Confidence 541 23455555 22 34699999999999999999999999998 67899998
Q ss_pred CCCC-CceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC----CCCCeeecCCCCCCCEE
Q 016480 198 RDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVV 272 (389)
Q Consensus 198 ~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~i~ 272 (389)
.... .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.++.. .+|+
T Consensus 185 ~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~----~~v~ 260 (473)
T 3of7_A 185 YQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL----RHVK 260 (473)
T ss_dssp BTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC----CSEE
T ss_pred CCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC----cceE
Confidence 5442 457789999999888999999999999999999999999999999999986543 456766643 5899
Q ss_pred EEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCC----ccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEe
Q 016480 273 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 348 (389)
Q Consensus 273 ~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~----~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG 348 (389)
+|+||.+|++||+++|+||+||.|.+||||.+.... ...|++|+.+ .+.+|++|+||.+|++||+++|+||+||
T Consensus 261 ~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG 338 (473)
T 3of7_A 261 YIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCG 338 (473)
T ss_dssp EEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEE
Confidence 999999999999999999999999999999987642 3578888765 4458999999999999999999999999
Q ss_pred CCCCCCCCCCCC--------------CCeecceEecCCCCCcEEEEEEecCeee
Q 016480 349 KGYCGALGHGDE--------------IDKTLPEPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 349 ~n~~GqLG~g~~--------------~~~~~P~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
.|.+||||++.. .....|++|+.+. +|++|+||..||+
T Consensus 339 ~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~ 390 (473)
T 3of7_A 339 RLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSV 390 (473)
T ss_dssp ECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEE
T ss_pred CCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEE
Confidence 999999998653 2244677776554 7999999999986
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.5e-48 Score=356.21 Aligned_cols=231 Identities=22% Similarity=0.221 Sum_probs=188.9
Q ss_pred ceeeeeecCCccccceeecccccccceeecCCCcEEEEecCCeeEEEECCeEEEEecCCCCccCCCCCCceeeeeeeecC
Q 016480 80 IELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF 159 (389)
Q Consensus 80 g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~i~~i~~G~~h~~~l~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~ 159 (389)
.+||.||.++..+.. +..++.+.+|++|+||..|+++|++|+||+||.|.+||||.+.
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~------------- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA------------- 59 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------
T ss_pred eEEEEeCCCCCcCcc---------cCCccccCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------
Confidence 368899877433321 2223455689999999999999999999999999999999522
Q ss_pred CCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEE
Q 016480 160 PSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHT 239 (389)
Q Consensus 160 ~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~ 239 (389)
+...+|++|+||.+|+++|+ +|+||+||.|.+||||.+ .++ ..+|++|+||.+|+++|+ +|+||+
T Consensus 60 ~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P---------~~~----~~~v~~ia~G~~hs~al~-~G~v~~ 124 (282)
T 3qhy_B 60 ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP---------AEA----RSGVDAIAAGAWASYALK-DGKVIA 124 (282)
T ss_dssp GGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC---------GGG----SSSEEEEEEETTEEEEEE-TTEEEE
T ss_pred cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC---------ccc----CCCeEEEECcCCEEEEEe-CCeEEE
Confidence 11237999999999999996 999999999999999952 222 237999999999999999 999999
Q ss_pred eeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccc
Q 016480 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 319 (389)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~ 319 (389)
||.|.+||||. |.+ .. .+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++
T Consensus 125 wG~n~~gqlg~--------~~~--~~---~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~---- 178 (282)
T 3qhy_B 125 WGDDSDGQTTV--------PAE--AQ---SGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA---- 178 (282)
T ss_dssp EECCTTSTTSC--------CGG--GG---SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----
T ss_pred ecCCCCCcCCC--------Ccc--CC---CCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----
Confidence 99999999973 211 12 57999999999999999 89999999999999983 3222
Q ss_pred cCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCeee
Q 016480 320 RKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 320 ~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.+ .+ .+|++|+||.+||+
T Consensus 179 --~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~----------~~--~~v~~i~~G~~h~~ 232 (282)
T 3qhy_B 179 --QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE----------AL--SGVSAIASGEWYSL 232 (282)
T ss_dssp --GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG----------GG--SSCCEEEECSSCEE
T ss_pred --CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc----------cC--CCceEEEcCCCEEE
Confidence 23799999999999999 899999999999999996431 11 35788888888875
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.8e-47 Score=352.79 Aligned_cols=231 Identities=19% Similarity=0.204 Sum_probs=196.2
Q ss_pred cCccccceeeeeecCCccccceeecccccccceeecCCCcEEEEecCCeeEEEECCeEEEEecCCCCccCCCCCCceeee
Q 016480 74 MSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVS 153 (389)
Q Consensus 74 ~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~i~~i~~G~~h~~~l~~g~vy~wG~n~~gqlG~~~~~~~~~~ 153 (389)
...+ +|+||.||.+..++++. |. +...+|++|+||..|+++|++|+||+||.|.+||||.+
T Consensus 37 ~~l~-~G~v~~wG~n~~Gqlg~--------p~--~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P-------- 97 (282)
T 3qhy_B 37 LALK-GGKVLGWGANLNGQLTM--------PA--ATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVP-------- 97 (282)
T ss_dssp EEEE-TTEEEEEECCSSSTTSC--------CG--GGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCC--------
T ss_pred EEEE-CCEEEEEeCCCCCCCCC--------Cc--cCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCC--------
Confidence 3445 89999999999999862 11 23457999999999999999999999999999999952
Q ss_pred eeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEee
Q 016480 154 FTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 233 (389)
Q Consensus 154 p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~ 233 (389)
.++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||... ....+|++|+||.+|+++|+
T Consensus 98 -~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~-------------~~~~~i~~i~~G~~~~~~l~- 157 (282)
T 3qhy_B 98 -AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA-------------EAQSGVTALDGGVYTALAVK- 157 (282)
T ss_dssp -GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG-------------GGGSSEEEEEECSSEEEEEE-
T ss_pred -ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc-------------cCCCCeEEEEcccCEEEEEE-
Confidence 222 238999999999999999 9999999999999998432 12346899999999999999
Q ss_pred CCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccE
Q 016480 234 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (389)
Q Consensus 234 ~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~ 313 (389)
+|+||+||.|.+||||. |.++. .+|++|+||.+|+++| ++|+||+||.|.+||||.+.
T Consensus 158 ~G~v~~wG~n~~gqlg~--------p~~~~-----~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~-------- 215 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT-------- 215 (282)
T ss_dssp TTEEEEEECCTTSTTSC--------CGGGG-----SSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--------
T ss_pred CCEEEEecCCCCCCCCC--------ceecC-----CCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--------
Confidence 89999999999999972 33331 5799999999999999 89999999999999998532
Q ss_pred EeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCCCCCCCCCCCCCCeecceEecCCCCCcEEEEEEecCeee
Q 016480 314 AIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVKFIRNFYY 388 (389)
Q Consensus 314 ~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~s~ 388 (389)
+.+ .+|++|+||.+|++||+ +|+||+||.|.+||++.. ..|++|+||..|++
T Consensus 216 --~~~----~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------~~v~~iaaG~~h~~ 267 (282)
T 3qhy_B 216 --EAL----SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------SGVSSIEAGPNAAY 267 (282)
T ss_dssp --GGG----SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------SCEEEEEECSSCEE
T ss_pred --ccC----CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------CCcEEEEECcCeEE
Confidence 112 26999999999999999 999999999999998762 15899999999986
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.29 E-value=0.00028 Score=67.69 Aligned_cols=188 Identities=7% Similarity=0.030 Sum_probs=111.3
Q ss_pred CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCC
Q 016480 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 190 (389)
.|..++......+.- .||.|..|-.... + ....+. .....|..++......+.-..+|.|..|-..
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~-----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTG-E-----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSC-C-----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCC-c-----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 466676633333333 7888888865421 1 011111 1223688888777777777889999999754
Q ss_pred CCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCC
Q 016480 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (389)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (389)
.... . .+.....-....|..++....+.+.-+.+|.|..|-..... ....+.... ..
T Consensus 242 ~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~--~~ 298 (435)
T 1p22_A 242 SPTD---------I-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNGHK--RG 298 (435)
T ss_dssp SSSC---------C-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEECCS--SC
T ss_pred CCCC---------c-eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcCCC--Cc
Confidence 3110 1 11111111233567777766677777889999999543211 111222221 46
Q ss_pred EEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeC
Q 016480 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349 (389)
Q Consensus 271 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~ 349 (389)
|..++......++-..+|.|..|-.... ..+..+......|..++....+.+.-..+|.|..|=.
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECG--------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCC--------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 7777777777777888999999965431 1112222233368888886677777788999999964
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.06 E-value=0.0011 Score=63.71 Aligned_cols=186 Identities=8% Similarity=-0.008 Sum_probs=107.7
Q ss_pred CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCC
Q 016480 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 190 (389)
.|..++......+.- .||.|+.|-.... + ....+. .....|..++......+.-+.+|.|+.|-..
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETG-E-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT-E-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcC-c-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 356666554444444 8888999865321 0 011111 1223677777766777777889999999754
Q ss_pred CCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCC
Q 016480 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (389)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (389)
..-. . ..+. .....|..++......+.-+.+|.|..|-..... ....+.... ..
T Consensus 228 ~~~~---------~---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~--~~ 281 (445)
T 2ovr_B 228 TGQC---------L---HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----------CLHTLQGHT--NR 281 (445)
T ss_dssp SCCE---------E---EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----------EEEEECCCS--SC
T ss_pred CCcE---------E---EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----------EeEEecCCC--Cc
Confidence 3110 0 0111 1233566666666666667789999999543211 011122111 46
Q ss_pred EEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCC
Q 016480 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 271 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 350 (389)
|..++....+.+.-..+|.|..|-..... .+..+......+..++......++-..+|.|..|=..
T Consensus 282 v~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGN--------------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 88888877777778889999999654311 1111212223566666666666777788899998653
No 15
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.82 E-value=0.0052 Score=58.98 Aligned_cols=200 Identities=8% Similarity=0.012 Sum_probs=103.6
Q ss_pred CcEEEEecCCeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC----CCeeEEEEcCCcEE
Q 016480 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQVF 185 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~h~~~lt~~G~vy 185 (389)
.|..++......++. .||.|..|-.... + ....+. .....|..++.- ....+.-+.+|.|.
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKG-C-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTT-E-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCC-c-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 466666544434444 8888998865321 1 011111 112256555442 24455567889999
Q ss_pred EEeCCCCCcccCCCCCC--------ceecCEEeccc--CCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCC
Q 016480 186 TCGDNSSFCCGHRDTNR--------PIFRPRLVEAL--KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~--------~~~~p~~v~~~--~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~ 255 (389)
.|-.............. ....|..+..+ ....|..++......+.-..+|.|..|-......
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-------- 302 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-------- 302 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--------
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------
Confidence 99866532221100000 00001011111 2235667766666677778899999995432111
Q ss_pred CCCCeeecCCCCCCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC
Q 016480 256 RPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 333 (389)
Q Consensus 256 ~~~p~~v~~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~ 333 (389)
...+.... ..|..++... ...+.-..+|.|+.|-.... ..+..+......|..++....
T Consensus 303 ---~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~ 363 (464)
T 3v7d_B 303 ---LYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG--------------ELMYTLQGHTALVGLLRLSDK 363 (464)
T ss_dssp ---EEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSS
T ss_pred ---EEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEEeCCCCcEEEEEEcCC
Confidence 11111111 3566666543 35566677889999864321 122222223335777777667
Q ss_pred eEEEEecCCcEEEEeCCC
Q 016480 334 HVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 334 hs~alt~~G~v~~wG~n~ 351 (389)
+.+.-..||.|..|=...
T Consensus 364 ~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCC
Confidence 777777888888886543
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=96.86 E-value=0.0003 Score=46.29 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=31.6
Q ss_pred cccccCChHHHHHHHHhCCCCccccccccccccccccc
Q 016480 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (389)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (389)
..+.+||+||+..|| .+|++.|+..+..+|+.|...
T Consensus 7 ~~~~~LP~eil~~I~--~~L~~~dl~~~~~Vck~w~~~ 42 (53)
T 1fs1_A 7 VSWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYRL 42 (53)
T ss_dssp --CCSSCHHHHHHHH--TTSCGGGHHHHHTTCHHHHHH
T ss_pred CCHHHCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999 899999999999999998654
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.67 E-value=0.0033 Score=54.56 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=60.0
Q ss_pred CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCC
Q 016480 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 164 ~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n 243 (389)
.|.+|+--..|.+++--+++++.+|+++.||+-.... .-++.++.+|.++++-+..-+.+-.||+.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t--------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH--------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG--------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC--------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 6888888899999999999999999999999876544 22579999999999999999999999986
Q ss_pred CCccc
Q 016480 244 THGQL 248 (389)
Q Consensus 244 ~~gql 248 (389)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 55443
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.51 E-value=0.0046 Score=53.66 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=60.3
Q ss_pred cceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeC
Q 016480 216 VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (389)
Q Consensus 216 ~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~ 295 (389)
..|.+|+.-..|..++--+++++++|+++.||+-. +... .+..++.+|.++++-+..-+.+--||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~i------------p~ta--gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDV------------DDHA--GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCC------------CGGG--CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceec------------CCCc--chHHhHhccCCeEEEEeceeeEEEecC
Confidence 46889999999999999999999999999999832 2221 478999999999999999999999998
Q ss_pred CCCCcc
Q 016480 296 GSNFCL 301 (389)
Q Consensus 296 n~~gqL 301 (389)
.....|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 766554
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.96 E-value=0.8 Score=46.66 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=11.8
Q ss_pred CeEEEEecCCcEEEEeC
Q 016480 333 EHVVALDSSGYVYTWGK 349 (389)
Q Consensus 333 ~hs~alt~~G~v~~wG~ 349 (389)
.|+++...+|+||.+|-
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 58888888889999984
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=93.23 E-value=5.4 Score=37.27 Aligned_cols=189 Identities=7% Similarity=0.023 Sum_probs=112.8
Q ss_pred CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCC
Q 016480 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 190 (389)
.|..++......+.- .||.|..|-.... + ....+. .....|..++......+.-..||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC-C-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC-e-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 366676655555555 8899999964321 1 011111 1223688888866666666789999999765
Q ss_pred CCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCC
Q 016480 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (389)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (389)
..-. ...+. .....|..++......+.-+.+|.|..|-...... ......+.... ..
T Consensus 202 ~~~~------------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~~~--~~ 258 (435)
T 1p22_A 202 TGEM------------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD--------ITLRRVLVGHR--AA 258 (435)
T ss_dssp SCCE------------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC--------CEEEEEECCCS--SC
T ss_pred CCcE------------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC--------ceeeeEecCCC--Cc
Confidence 3110 01111 12345777777777777778899999995432110 00001122221 46
Q ss_pred EEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCC
Q 016480 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 271 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 350 (389)
|..++....+.++-..+|.|..|-.... ..+..+......|..++......++-..+|.|..|=..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 8888887777788888999999965331 11111222233577777777777777889999999754
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.16 E-value=5.6 Score=37.22 Aligned_cols=188 Identities=6% Similarity=-0.053 Sum_probs=108.9
Q ss_pred cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCC
Q 016480 113 NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNS 191 (389)
Q Consensus 113 i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~ 191 (389)
|..++......+.- .||.|+.|-....-. ...+. .....|..++......+.-..+|.|+.|-...
T Consensus 202 v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 202 VRCMHLHEKRVVSGSRDATLRVWDIETGQC------------LHVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEESSSCCE------------EEEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred EEEEEecCCEEEEEeCCCEEEEEECCCCcE------------EEEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCC
Confidence 55565544444444 788888886542110 11111 12236777777666677778899999996432
Q ss_pred CCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCE
Q 016480 192 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (389)
Q Consensus 192 ~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 271 (389)
.- ....+. .....|..++....+.+.-..+|.|..|-...... ...+.... ..+
T Consensus 269 ~~------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~--~~v 322 (445)
T 2ovr_B 269 ET------------CLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTLTGHQ--SLT 322 (445)
T ss_dssp TE------------EEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEECCCC--SCE
T ss_pred Cc------------EeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEEcCCc--ccE
Confidence 10 001111 12235777777666666677899999995432111 11122211 357
Q ss_pred EEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCC
Q 016480 272 VQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 272 ~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 350 (389)
..++......+.-..+|.|..|-..... ....+.........|..++....+.++-..+|.|..|-..
T Consensus 323 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 323 SGMELKDNILVSGNADSTVKIWDIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred EEEEEeCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 7777777777778889999999653310 1112221111233688888877777777889999999754
No 22
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.07 E-value=0.015 Score=52.33 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=32.1
Q ss_pred ccccCChHHHHHHHHhCCCCccccccccccccccccc
Q 016480 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (389)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (389)
++++||+||++.|| .+|+|+||..+..||+++...
T Consensus 4 ~l~~LP~ei~l~Il--sfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYIL--SFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHH--HTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999 899999999999999998553
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.74 E-value=12 Score=37.53 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=51.5
Q ss_pred eeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCC--CEEEEEc---CCCeeEEEEcCCcEEEEeCCCCCcc
Q 016480 122 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSA---SENHAAFVLQSGQVFTCGDNSSFCC 195 (389)
Q Consensus 122 h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~--~i~~i~~---G~~h~~~lt~~G~vy~wG~n~~gql 195 (389)
|..++ .+|+||++|-......|...... ............ ++...-. ...+++++..+|+||.+|-....
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~--~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-- 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGI--TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-- 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSE--EEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT--
T ss_pred eEEEEecCCEEEEEecccccccccCCCCe--EEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC--
Confidence 33334 49999999965443332211110 111112221111 2333322 22344677789999999964321
Q ss_pred cCCCCCCceecC-----EEecccCCcceEEEEccCceEEEEeeCCcEEEeeC
Q 016480 196 GHRDTNRPIFRP-----RLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (389)
Q Consensus 196 G~~~~~~~~~~p-----~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~ 242 (389)
.-..+.| ..+..+. ..-..|++++..+|+||++|-
T Consensus 266 -----~v~~yd~~t~~W~~~~~~~-------~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 266 -----KTSLYDSSSDSWIPGPDMQ-------VARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp -----CEEEEEGGGTEEEECCCCS-------SCCSSCEEEECTTSCEEEECC
T ss_pred -----ceEEecCcCCceeECCCCC-------ccccccceEEecCCeEEEEeC
Confidence 1111111 1111111 123567777777999999986
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.91 E-value=12 Score=37.88 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCeeEEEEc-CCcEEEEeCCCCCcccCCCCCCceec-----CEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCC
Q 016480 172 ENHAAFVLQ-SGQVFTCGDNSSFCCGHRDTNRPIFR-----PRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 172 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~~-----p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n 243 (389)
..|+++... +|+||.+|-.....--. ..-..+. -..+..+ + ..-..|++++..+|+||.+|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~--~dv~~yd~~t~~W~~~~~~---p----~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGL--SDNWIFDMKTREWSMIKSL---S----HTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBC--CCCEEEETTTTEEEECCCC---S----BCCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcc--ccEEEEeCCCCcEEECCCC---C----CCcccceEEEEcCCEEEEECCC
Confidence 468887776 89999999533211000 0000111 1111111 1 1345677777568999999853
No 25
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=89.17 E-value=12 Score=33.34 Aligned_cols=200 Identities=8% Similarity=-0.046 Sum_probs=93.8
Q ss_pred ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC---CeeEEEEcCCcEEEEeCCCCCcccCCCCCCc
Q 016480 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP 203 (389)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 203 (389)
.+|.|..|-.... + ....+. .....|..++... ...+.-..+|.|+.|-......
T Consensus 93 ~dg~i~v~d~~~~-~-----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------- 150 (366)
T 3k26_A 93 SRGIIRIINPITM-Q-----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--------- 150 (366)
T ss_dssp TTCEEEEECTTTC-C-----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE---------
T ss_pred CCCEEEEEEchhc-e-----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE---------
Confidence 8899999965421 1 111111 1223677777643 4455556789999997543110
Q ss_pred eecCEEec--ccCCcceEEEEccC--ceEEEEeeCCcEEEeeCCCCccccC-------CCC--CCC------CCCeeecC
Q 016480 204 IFRPRLVE--ALKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGH-------GDT--LDR------PTPKSIAP 264 (389)
Q Consensus 204 ~~~p~~v~--~~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqlG~-------~~~--~~~------~~p~~v~~ 264 (389)
...+. ......|..++... ...+....+|.|+.|-......+.. ... ... ..|..-..
T Consensus 151 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 151 ---VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp ---EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred ---EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 11110 11233566666543 3444556789999996543211100 000 000 00000000
Q ss_pred CCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEE--Eec--CCeEEEEec
Q 016480 265 LEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAG--DEHVVALDS 340 (389)
Q Consensus 265 ~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i--~~G--~~hs~alt~ 340 (389)
......|..++......+.-..+|.|..|-.....+.-............+..+......|..+ +.. ..+.++-..
T Consensus 228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 0011345555554667777778999999976443221110111111112222221111123222 222 445555678
Q ss_pred CCcEEEEeCCC
Q 016480 341 SGYVYTWGKGY 351 (389)
Q Consensus 341 ~G~v~~wG~n~ 351 (389)
+|.|+.|-...
T Consensus 308 dg~i~vwd~~~ 318 (366)
T 3k26_A 308 VGKLYVWDLEV 318 (366)
T ss_dssp TSCEEEEECCS
T ss_pred CCcEEEEECCC
Confidence 89999997543
No 26
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=86.83 E-value=20 Score=33.35 Aligned_cols=210 Identities=8% Similarity=0.015 Sum_probs=102.3
Q ss_pred cEEEEecC--C-eeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC---CCeeEEEEcCCcEE
Q 016480 113 NMQITTGR--Y-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVF 185 (389)
Q Consensus 113 i~~i~~G~--~-h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~~G~vy 185 (389)
|..++-.. . ..+.- .+|.|..|-........ ....+..........|..|+.. ....+.-..+|.|+
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 55555432 2 33333 78999999876432111 0111111111222367777764 33444556799999
Q ss_pred EEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc--e-EEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeee
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--F-TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--h-s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (389)
.|-....... .....+. .....|..|+.... + .+.-..+|.|..|-....++ ....+
T Consensus 258 i~d~~~~~~~---------~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~ 317 (430)
T 2xyi_A 258 IWDTRNNNTS---------KPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSF 317 (430)
T ss_dssp EEETTCSCSS---------SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEE
T ss_pred EEECCCCCCC---------cceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEe
Confidence 9986642100 0011111 12234566665432 2 33346688999996543211 11122
Q ss_pred cCCCCCCCEEEEEecCc---eEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC---eEE
Q 016480 263 APLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVV 336 (389)
Q Consensus 263 ~~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~---hs~ 336 (389)
.... ..|..|+.... ..+.-..+|.|..|-....+..-.........|..+.........|..++.-.. ..+
T Consensus 318 ~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 318 ESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp ECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred ecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 2221 46777776543 344456788999997654321100000000112333333223335777776543 445
Q ss_pred EEecCCcEEEEeCC
Q 016480 337 ALDSSGYVYTWGKG 350 (389)
Q Consensus 337 alt~~G~v~~wG~n 350 (389)
....+|.|..|=..
T Consensus 396 s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 396 SVSEDNIMQVWQMA 409 (430)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEECCCCEEEeEcc
Confidence 56778889999653
No 27
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=86.52 E-value=0.15 Score=45.96 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.6
Q ss_pred cccccCChHHHHHHHHhCCCCccccc-cccccccccccc
Q 016480 8 FSIEELPSHLIFEILTSGRLSAVDLA-HLELTSKTFGGS 45 (389)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~-~l~~t~~~f~~~ 45 (389)
..+.+||+|||..|| .+|.+.+|. ....+|+.+...
T Consensus 49 ~~~~~LP~ell~~Il--~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVL--AELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHH--HTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHH--HcCCHHHHHHHHHHHhHHHHHH
Confidence 467899999999999 899999999 999999998654
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=83.71 E-value=21 Score=31.04 Aligned_cols=157 Identities=6% Similarity=-0.033 Sum_probs=76.6
Q ss_pred EecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC-eeEEEEcCCcEEEEeCCCCCc
Q 016480 117 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFC 194 (389)
Q Consensus 117 ~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-h~~~lt~~G~vy~wG~n~~gq 194 (389)
..+.-..+++ .||++++.+......+....... ...... ......|..++...+ ..++...+|.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINT--LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEE--ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-ccccee--ccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 3445567788 89999988875544333222221 111111 122335666654432 234444588999997654221
Q ss_pred ccCCCCCCceecCEEecc-cCCcceEEEEccCc--eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCE
Q 016480 195 CGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (389)
Q Consensus 195 lG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G~~--hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 271 (389)
. .....+.. .....|..++.... ..++-..+|.|+.|-..... ......+.... ..|
T Consensus 85 ~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~--~~i 144 (337)
T 1gxr_A 85 K---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELTSSA--PAC 144 (337)
T ss_dssp C---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEECSS--SCE
T ss_pred e---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeecccCC--Cce
Confidence 0 01111110 12234555555433 33444668899998543210 00011111111 356
Q ss_pred EEEEec--CceEEEEECCCcEEEEeCC
Q 016480 272 VQIAAG--PSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 272 ~~I~~G--~~h~~~lt~~G~vy~wG~n 296 (389)
..++.. ..+.++-..+|.|+.|-..
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~ 171 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 666553 3455556678999999654
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=79.79 E-value=30 Score=30.07 Aligned_cols=154 Identities=6% Similarity=-0.015 Sum_probs=77.4
Q ss_pred CCCcEEEEecCC-eeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecC-CCCCCEEEEEcCCC--eeEEEEcCCcE
Q 016480 110 SAGNMQITTGRY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSASEN--HAAFVLQSGQV 184 (389)
Q Consensus 110 ~~~i~~i~~G~~-h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~-~~~~~i~~i~~G~~--h~~~lt~~G~v 184 (389)
...|..++.... ..++. .+|.|..|-....... . ....+.. .....|..++...+ ..++-..+|.|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK------S---PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC------S---CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce------e---eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 334666665443 34444 8888999976532210 0 1111111 12235666665533 34444678899
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc--CceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeee
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (389)
+.|-.... .... ...+. .....|..++.. ..+.+.-+.+|.|+.|-..... ....+
T Consensus 122 ~~~d~~~~---------~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~ 179 (337)
T 1gxr_A 122 SIWDLAAP---------TPRI-KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQF 179 (337)
T ss_dssp EEEECCCC-----------EE-EEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEE
T ss_pred EEEECCCC---------Ccce-eeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeee
Confidence 99965431 0000 01111 122345555543 3344555678999999543211 11122
Q ss_pred cCCCCCCCEEEEEec--CceEEEEECCCcEEEEeCC
Q 016480 263 APLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 263 ~~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 296 (389)
.... ..|..++.. ....++-..+|.|+.|-..
T Consensus 180 ~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 180 QGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eccc--CceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 2211 357776664 3355556678999999654
No 30
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=79.70 E-value=0.66 Score=42.10 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.2
Q ss_pred cccccCChHHHHHHHHhCCCCccccccccccccccccc
Q 016480 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (389)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (389)
..+.+||+||+..|| .+|+..|+..+..+|+.|...
T Consensus 7 ~~~~~LP~eil~~If--~~L~~~d~~~~~~vc~~W~~~ 42 (336)
T 2ast_B 7 VSWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYRL 42 (336)
T ss_dssp CCSSSSCHHHHHHHH--TTSCHHHHHHTTSSCHHHHHH
T ss_pred CChhhCCHHHHHHHH--HhCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999 899999999999999987553
No 31
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=75.94 E-value=41 Score=29.56 Aligned_cols=191 Identities=8% Similarity=-0.070 Sum_probs=101.2
Q ss_pred CCcEEEEecCC----eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC--CeeEEEEcCC
Q 016480 111 AGNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSG 182 (389)
Q Consensus 111 ~~i~~i~~G~~----h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~G 182 (389)
..|..|+-... ..++. .||.|..|-....++ . ....+. .....|..++... ...+.-..+|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~-~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------T-IPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------E-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------e-eEEEec-cccCCEEEEEECcCCCEEEEEcCCC
Confidence 34777877654 45555 789999997654221 0 001111 1123577766543 3455567789
Q ss_pred cEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc--cCc-e-EEEEeeCCcEEEeeCCCCccccCCCCCCCCC
Q 016480 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLN-F-TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (389)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~-h-s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~ 258 (389)
.|..|-....- +..+.. ....|..++. ... . .+.-..+|.|+.|-.... ..
T Consensus 109 ~v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NP 163 (368)
T ss_dssp EEEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SC
T ss_pred cEEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cE
Confidence 99999755311 011111 2335666664 333 2 334466899999943211 11
Q ss_pred CeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCe----
Q 016480 259 PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH---- 334 (389)
Q Consensus 259 p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~h---- 334 (389)
...+... ..+..+..-....++.+.++.++.|-...... ....+.........+..+......
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 164 MMVLQLP---ERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp SEEEECS---SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred EEEEecC---CCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCe
Confidence 1122222 35666666677788888899999997643211 111111111122234444443333
Q ss_pred EEEEecCCcEEEEeCC
Q 016480 335 VVALDSSGYVYTWGKG 350 (389)
Q Consensus 335 s~alt~~G~v~~wG~n 350 (389)
.++-..+|.|..|=..
T Consensus 231 ~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 231 FALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEEETTSEEEEEESS
T ss_pred EEEecCCCcEEEEecC
Confidence 5566788888888654
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=75.36 E-value=46 Score=29.91 Aligned_cols=191 Identities=10% Similarity=-0.035 Sum_probs=89.3
Q ss_pred CCCcEEEEecCCeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC--eeEEEEcCCcEE
Q 016480 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVF 185 (389)
Q Consensus 110 ~~~i~~i~~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--h~~~lt~~G~vy 185 (389)
...|..++--....++. .+|.|..|-......+. ............|..|+...+ ..+.-..+|.|.
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLL---------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------C---------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE---------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 34466666443333333 77888887432211100 000001111225766665543 333445788899
Q ss_pred EEeCCCCCcccCCCCCCceecCEEeccc--CCcceEEEEcc---CceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCe
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~~i~~i~~G---~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 260 (389)
.|-.+.. ..+..+ ....|..|+.. ....+.-..+|.|..|-..... ...
T Consensus 165 iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----------~~~ 218 (357)
T 4g56_B 165 VWDLSQK---------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----------PAT 218 (357)
T ss_dssp EEETTTT---------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----------CBC
T ss_pred EEECCCC---------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-----------eee
Confidence 9864431 111111 12346666653 2334455678999999332110 011
Q ss_pred eecCCCCCCCEEEEEecC--ceEE-EEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecC---Ce
Q 016480 261 SIAPLEEVGSVVQIAAGP--SYML-AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EH 334 (389)
Q Consensus 261 ~v~~~~~~~~i~~I~~G~--~h~~-~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~---~h 334 (389)
.+........+..|+... .+.+ .-..++.|+.|-.... ..+..+......|..|+... ..
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECCCSSCEEEEEECSSSSCC
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEeccceeEEEEEEcCCCCCE
Confidence 111111113566676532 2333 3467888999854321 11111221233577776542 23
Q ss_pred EEEEecCCcEEEEeC
Q 016480 335 VVALDSSGYVYTWGK 349 (389)
Q Consensus 335 s~alt~~G~v~~wG~ 349 (389)
.+.-..||.|+.|=.
T Consensus 285 lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 285 LASISEDCTVAVLDA 299 (357)
T ss_dssp EEEEETTSCEEEECT
T ss_pred EEEEeCCCEEEEEEC
Confidence 334568899999943
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=74.23 E-value=46 Score=29.38 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=98.8
Q ss_pred CcEEEEecCCe-eEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC----CCeeEEEEcCCcE
Q 016480 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 184 (389)
Q Consensus 112 ~i~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G----~~h~~~lt~~G~v 184 (389)
.|..++..... .++. .||.|+.|-.... . . .+..........|..++.. ....+.-..||.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~-~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------T-H-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT---------E-E-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------c-c-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 35555544322 3333 6888988864310 0 0 1111111122367777764 3455556778999
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc----eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCe
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN----FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~----hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 260 (389)
..|-.... ...+..........|..++.... ..+....+|.|..|-..... ...+.
T Consensus 82 ~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~ 141 (379)
T 3jrp_A 82 LIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---------TTSPI 141 (379)
T ss_dssp EEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS---------CCCEE
T ss_pred EEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC---------ceeeE
Confidence 99964431 00111111112335666665433 44555778999998543211 11111
Q ss_pred eecCCCCCCCEEEEEec---------------CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccE
Q 016480 261 SIAPLEEVGSVVQIAAG---------------PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (389)
Q Consensus 261 ~v~~~~~~~~i~~I~~G---------------~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v 325 (389)
.+.... ..|..++.. ....++-..+|.|+.|-.... ......+..+......|
T Consensus 142 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 142 IIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSDWV 209 (379)
T ss_dssp EEECCT--TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSSCE
T ss_pred EecCCC--CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccCcE
Confidence 222221 356666654 345566677899999954321 01111222222223357
Q ss_pred EEEEecCC-----eEEEEecCCcEEEEeCC
Q 016480 326 VRVSAGDE-----HVVALDSSGYVYTWGKG 350 (389)
Q Consensus 326 ~~i~~G~~-----hs~alt~~G~v~~wG~n 350 (389)
..++.-.. ..+....+|.|..|=..
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 77776543 44445778999999654
No 34
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=74.23 E-value=56 Score=30.34 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=43.9
Q ss_pred eEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCC
Q 016480 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 218 i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 296 (389)
|.+|++ ....+++.++|.|..|=-....+ ...+..+. ..+.++.+-....++++++|.|+.|=..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee--cceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 899999 77778888999999995433221 11122222 2466766666668888999999999553
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=74.11 E-value=41 Score=28.77 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=97.4
Q ss_pred CCcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEc---CCCeeEEEEcCCcEEE
Q 016480 111 AGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA---SENHAAFVLQSGQVFT 186 (389)
Q Consensus 111 ~~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~h~~~lt~~G~vy~ 186 (389)
..|..++......+.- .+|.|+.|-. + . ....+. .....|..++. .....+.-..+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~--------~---~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G--------S---LVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T--------E---EEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C--------c---EEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 3467777644444444 8999999951 1 0 111111 12224555543 4556666778899999
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc-eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCC
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 265 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~ 265 (389)
|-... ....+.......|..++.... ..++-..+|.|+.|-..... ....+...
T Consensus 170 ~d~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~~~~~~~ 224 (313)
T 3odt_A 170 WQNDK--------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-----------VLRTYEGH 224 (313)
T ss_dssp EETTE--------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEECC
T ss_pred EecCc--------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-----------hhhhhhcC
Confidence 95111 011111112334555544322 24455778899999543211 11122222
Q ss_pred CCCCCEEEEEecCc-eEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC-eEEEEecCCc
Q 016480 266 EEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVALDSSGY 343 (389)
Q Consensus 266 ~~~~~i~~I~~G~~-h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~-hs~alt~~G~ 343 (389)
. ..|..++...+ ..++-..+|.|+.|-.... . .+..+......|..++.-.. ..++-..+|.
T Consensus 225 ~--~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 288 (313)
T 3odt_A 225 E--SFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------S--LKQVITLPAISIWSVDCMSNGDIIVGSSDNL 288 (313)
T ss_dssp S--SCEEEEEECTTSCEEEEETTSEEEEECTTTC------------C--EEEEEECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred C--ceEEEEEEecCCCEEEEecCCEEEEEECCCC------------c--eeEEEeccCceEEEEEEccCCCEEEEeCCCc
Confidence 1 45777766543 5666678899999964321 1 11112212335777765433 3556688999
Q ss_pred EEEEeCC
Q 016480 344 VYTWGKG 350 (389)
Q Consensus 344 v~~wG~n 350 (389)
|+.|=..
T Consensus 289 i~iw~~~ 295 (313)
T 3odt_A 289 VRIFSQE 295 (313)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 9999654
No 36
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=73.85 E-value=45 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.1
Q ss_pred CeeEEEECCeEEEEecCC
Q 016480 121 YHTLLISNSSVFSCGSSL 138 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (389)
.|++++.+++||++|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 455555888999999643
No 37
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=73.43 E-value=47 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=12.7
Q ss_pred CceEEEEeeCCcEEEeeCC
Q 016480 225 LNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~n 243 (389)
..|+++. -+++||.+|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566555 58899999854
No 38
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.97 E-value=81 Score=31.65 Aligned_cols=149 Identities=9% Similarity=-0.068 Sum_probs=74.2
Q ss_pred CcEEEEecCCe-eEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC---CeeEEEEcCCcEE
Q 016480 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVF 185 (389)
Q Consensus 112 ~i~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~h~~~lt~~G~vy 185 (389)
.|..++-.... .++. .+|.|..|-..... ............|..++... ...+.-..+|.|+
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 46666654332 2333 77888888643211 11111111223577766543 3445556789999
Q ss_pred EEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc----cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCee
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA----GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~ 261 (389)
.|-..... ....+.......+..++. .....++-..+|.|+.|-..... ....
T Consensus 167 vwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----------~~~~ 223 (814)
T 3mkq_A 167 VWSLGQST------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----------CVAT 223 (814)
T ss_dssp EEETTCSS------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----------EEEE
T ss_pred EEECCCCc------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------EEEE
Confidence 99754311 011111111123344433 33344455678899999543211 1122
Q ss_pred ecCCCCCCCEEEEEecCc--eEEEEECCCcEEEEeCCC
Q 016480 262 IAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 262 v~~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~ 297 (389)
+.... ..|..++...+ ..+.-..+|.|+.|-...
T Consensus 224 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 224 LEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 22221 35666665443 455556789999996543
No 39
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=72.38 E-value=19 Score=28.31 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCcceEEEEccC-ceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEec-CceEEEEECCCcEE
Q 016480 214 KGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVY 291 (389)
Q Consensus 214 ~~~~i~~i~~G~-~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G-~~h~~~lt~~G~vy 291 (389)
+....+++-|-. .+-+-+..||.|-.-.... +...--.+.... ..++.|-|- ..+-+++..+|+||
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~--~G~V~L~g~~sg~yL~mn~~G~l~ 95 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG--NGEVLLKSTETGQYLRINPDGTVD 95 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE--TTEEEEEETTTTEEEEECTTSBEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc--CCEEEEEEecCCEEEeECCCCCEe
Confidence 345668888876 5677788899997553221 111111222211 247788875 57788999999999
Q ss_pred EEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEecCCcEEE
Q 016480 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (389)
Q Consensus 292 ~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~ 346 (389)
+--. ..+......+.....-...+..+. ....+|++++|++|+
T Consensus 96 Gs~~----------~t~ecsflEi~~en~y~v~i~g~~--sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 96 GTRD----------RSDTHIQFQISPEGNGEVLLKSTE--TGQYLRINPDGTVDG 138 (142)
T ss_dssp EECC----------TTCGGGCEEEEECSTTCEEEEETT--TCCEEEECTTSBEEE
T ss_pred eccc----------CCCCceEEEEEeecCcEEEEEEec--CCEEEEECCCcCCcc
Confidence 7422 112222333322211111222222 345899999999995
No 40
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=70.89 E-value=92 Score=31.41 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=82.4
Q ss_pred CEEEEEcC----CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC----ceEEEEeeCC
Q 016480 164 HVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRG 235 (389)
Q Consensus 164 ~i~~i~~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~hs~~lt~~G 235 (389)
.|..++.. ....+.-..||.|+.|-.... ...+..........|..++... ...+.-+.+|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 67777764 344555678899999974431 0011111111233566666543 3455567789
Q ss_pred cEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC---------------ceEEEEECCCcEEEEeCCCCCc
Q 016480 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNFC 300 (389)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~---------------~h~~~lt~~G~vy~wG~n~~gq 300 (389)
.|..|-..... ...+..+.... ..|..++... ...+.-..+|.|+.|-.....
T Consensus 124 ~I~vwdl~~~~---------~~~~~~~~~~~--~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~- 191 (753)
T 3jro_A 124 KVSVVEFKENG---------TTSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA- 191 (753)
T ss_dssp EEEEEECCSSS---------CCCCEEEECCS--SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-
T ss_pred cEEEEEeecCC---------CcceeEeecCC--CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-
Confidence 99999643221 11122222221 3566666543 455666778999998543210
Q ss_pred cCCCCCCCccccEEeeccccCCccEEEEEecCC-----eEEEEecCCcEEEEeCC
Q 016480 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKG 350 (389)
Q Consensus 301 LG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~-----hs~alt~~G~v~~wG~n 350 (389)
.....+..+......|..++.... ..+.-..+|.|..|=..
T Consensus 192 ---------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 192 ---------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred ---------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 011122222222336777776643 34445678999999644
No 41
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.31 E-value=66 Score=28.73 Aligned_cols=174 Identities=10% Similarity=0.114 Sum_probs=95.1
Q ss_pred EEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc-----CceEEEEeeCCcEEEeeC
Q 016480 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 242 (389)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~hs~~lt~~G~v~~wG~ 242 (389)
++.+.++.+++|+.|++|..-...--..+...... .....+...++.+|+.+... ..+.+++|++|.++..-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 45567789999999999998755422222111111 11112222345667777654 345788899999998865
Q ss_pred CCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe--cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecccc
Q 016480 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (389)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~ 320 (389)
.++-.. ...-...-.+.+...++.+.. +..+.+++|++|.+.-+-.++.-..|..... ++.-.+.
T Consensus 132 ~~~~~~-------r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~- 198 (312)
T 1suu_A 132 TDFKAV-------KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK- 198 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-
T ss_pred HHhhcc-------CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-
Confidence 443110 011112222333356666554 4667899999999998876654333332111 1222222
Q ss_pred CCccEEEEEe--cCCeEEEEecCCcEEEEeCCCCCCCC
Q 016480 321 KGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALG 356 (389)
Q Consensus 321 ~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG 356 (389)
.+..|+.+.. ...+.++++++|.+.-.--.++-..+
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccC
Confidence 2335666543 34567788899887766655543333
No 42
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=67.72 E-value=56 Score=28.73 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.7
Q ss_pred CceEEEEeeCCcEEEeeC
Q 016480 225 LNFTGFLTIRGHVHTCGS 242 (389)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~ 242 (389)
..|+++. .+++||.+|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566665 6889999985
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=67.00 E-value=71 Score=28.59 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=92.7
Q ss_pred CCCcEEEEecCCeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC--CeeEEEEcCCcEE
Q 016480 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVF 185 (389)
Q Consensus 110 ~~~i~~i~~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~G~vy 185 (389)
...|..++-.....++. .||.|..|-......+ .............|..|+... .+.+.-..||.|.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 34577776544444555 8999999965432110 011111111122576666543 3344446788898
Q ss_pred EEeCCCCCcccCCCCCCceecCEEecccC--CcceEEEEccCc---eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCe
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~---hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 260 (389)
.|-.... ..+..+. ...|..++.... ..+.-..||.|..|-..... ...
T Consensus 153 iwd~~~~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------~~~ 206 (344)
T 4gqb_B 153 VWDLAQQ---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------PAS 206 (344)
T ss_dssp EEETTTT---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----------CEE
T ss_pred EEECCCC---------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-----------eee
Confidence 8865431 1111221 234666665432 22334568999999432110 011
Q ss_pred eecCCCCCCCEEEEEecC--ceE-EEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecC---Ce
Q 016480 261 SIAPLEEVGSVVQIAAGP--SYM-LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EH 334 (389)
Q Consensus 261 ~v~~~~~~~~i~~I~~G~--~h~-~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~---~h 334 (389)
.+........+..++... .+. +.-..||.|..|=.... ..+..+......|..|+... .+
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCC
T ss_pred eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeE
Confidence 111111112455555432 223 33467888988854321 11111222233577777643 23
Q ss_pred EEEEecCCcEEEEeC
Q 016480 335 VVALDSSGYVYTWGK 349 (389)
Q Consensus 335 s~alt~~G~v~~wG~ 349 (389)
.+.-..||.|..|=.
T Consensus 273 lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 273 LASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEEETTSCEEEECT
T ss_pred EEEEeCCCeEEEEEC
Confidence 344578999999953
No 44
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.34 E-value=75 Score=28.64 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=91.4
Q ss_pred EEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC-----ceEEEEeeCCcEEEeeC
Q 016480 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (389)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~ 242 (389)
.+...++.+++|+.|++|..-....-..+..... .+....+...++.+|+.+.+.. ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG--QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC--EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC--EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 3456677888999999999875443222211111 1111122333567788887664 35677899998886654
Q ss_pred CCCccccCCCCCCCCCCeeecCCCCCCCEEEEE--ecCceEEEEECCCcEEEEeCC--CCCccCCCCCCCccccEEeecc
Q 016480 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 318 (389)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n--~~gqLG~g~~~~~~~P~~i~~~ 318 (389)
..+-.. .. .-...-.+.+.+.++.+. .+.++.+++|++|++|.+-.. +--.+|..... +++-.+
T Consensus 127 ~~~~~~------~r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSN------RS-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCC------CS-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhcc------cc-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 332210 00 111111222224555543 456788999999999998776 43333332211 112223
Q ss_pred ccCCccEEEEEecC--CeEEEEecCCcEEEE
Q 016480 319 RRKGIHVVRVSAGD--EHVVALDSSGYVYTW 347 (389)
Q Consensus 319 ~~~~~~v~~i~~G~--~hs~alt~~G~v~~w 347 (389)
. .+.+|+.+..-. .+.+.+|++|.+.-.
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRT 224 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEE
Confidence 2 344687776653 356778888876654
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.27 E-value=77 Score=28.72 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=83.6
Q ss_pred cEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC--CeeEEEEcCCcEEEEeC
Q 016480 113 NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFTCGD 189 (389)
Q Consensus 113 i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~ 189 (389)
+..++-...+.++. .+|.|+.|-.... + ....+.......|..|+... .+.++-+.+|.|+.|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSG-S-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTC-C-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCC-c-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33455555667777 9999999976431 1 11222222333677766543 34555567899999975
Q ss_pred CCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCC
Q 016480 190 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 269 (389)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 269 (389)
..... ...+. .....|..++......+.-..+|.|+.|-....+. ....+.... .
T Consensus 164 ~~~~~------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~--~ 218 (401)
T 4aez_A 164 ESQTK------------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQGHS--S 218 (401)
T ss_dssp TTCCE------------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--S
T ss_pred cCCeE------------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcCCC--C
Confidence 43111 11111 12345777777666666678899999996532111 111122221 3
Q ss_pred CEEEEEec--CceEEEEECCCcEEEEeCCC
Q 016480 270 SVVQIAAG--PSYMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 270 ~i~~I~~G--~~h~~~lt~~G~vy~wG~n~ 297 (389)
.|..++.- ..+.+.-..+|.|+.|-...
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 57666654 33455556789999996543
No 46
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.67 E-value=70 Score=28.02 Aligned_cols=211 Identities=12% Similarity=0.051 Sum_probs=112.9
Q ss_pred cEEEEecC--CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEc---CCCeeEEEEcCCcEEE
Q 016480 113 NMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA---SENHAAFVLQSGQVFT 186 (389)
Q Consensus 113 i~~i~~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~h~~~lt~~G~vy~ 186 (389)
+..+.... .+.+++ ++|++|.--..+ +... . .. -+ +....+|+.+.+ .....+++|++|.+.-
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~---~-~~---~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQG---S-KV---SL-KSREEKIVGAFIREKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHH---HHTS---E-EC---CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccC---c-cc---cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence 44444333 334555 999999764321 1100 0 00 14 555668888866 1246788999999988
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc--cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecC
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (389)
.-..++-+-..+ ..-+..-++..++.+.. +..+.+++|++|++|.+-..+.-.+|....- .+.-.
T Consensus 95 ~~l~~~~~~~~G--------~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i~ 161 (276)
T 3no0_A 95 IPLAEFEYKAQG--------MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGIK 161 (276)
T ss_dssp EEGGGTTTCSTT--------EECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCC
T ss_pred EEHHHhhhhcCC--------eEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEEc
Confidence 775554211000 00111112334444433 4556888999999999966554444332211 11112
Q ss_pred CCCCCCEEEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE--ecCCeEEEEec
Q 016480 265 LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALDS 340 (389)
Q Consensus 265 ~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~--~G~~hs~alt~ 340 (389)
+...++|+.+... ..+.+++|++|.+.-.-..++-..+.+.... . .+ .++.+++.+. .+....+++++
T Consensus 162 L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv-----~--~i-~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 162 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGT-----E--VS-GTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCE-----E--CC-CSSSCEEEEEEESSEEEEEEEET
T ss_pred cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcce-----E--EE-cCCCcEEEEEEeCCCCEEEEEcC
Confidence 3333678776654 3467888999988776655443222221100 0 01 1222455443 35667888999
Q ss_pred CCcEEE--EeCCCCCCC
Q 016480 341 SGYVYT--WGKGYCGAL 355 (389)
Q Consensus 341 ~G~v~~--wG~n~~GqL 355 (389)
+|++.- +-.++--.+
T Consensus 234 ~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLS 250 (276)
T ss_dssp TSCEEEEEEEGGGSCBC
T ss_pred CCeEEEeeeCHHHCCCc
Confidence 999988 754443333
No 47
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=65.62 E-value=18 Score=36.04 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=32.4
Q ss_pred ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE----ecCCeEEEEecCCcEEEEeC
Q 016480 279 SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS----AGDEHVVALDSSGYVYTWGK 349 (389)
Q Consensus 279 ~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~----~G~~hs~alt~~G~v~~wG~ 349 (389)
.+++++..+|+||.+|-.... ......| ...+...+. .-.+|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~------~v~~yd~--------~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK------KTSLYDS--------SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT------CEEEEEG--------GGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCC------ceEEecC--------cCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 345677789999999964321 1000001 000111111 22568888888999999985
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=63.92 E-value=81 Score=28.19 Aligned_cols=246 Identities=7% Similarity=-0.109 Sum_probs=0.0
Q ss_pred hccceeeccCccccceeeeeecCCccccceeecccccccceeecCCC---------------cEEEEecCCeeEEE--EC
Q 016480 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG---------------NMQITTGRYHTLLI--SN 128 (389)
Q Consensus 66 ~~~~~~~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~p~~v~~~~~---------------i~~i~~G~~h~~~l--~~ 128 (389)
+...++. ..+..+++.+.-+..+..-..-.+........+...... +..++......++. .+
T Consensus 148 ~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (425)
T 1r5m_A 148 HRAPIVS-VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226 (425)
T ss_dssp CCSCEEE-EEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred CCccEEE-EEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Q ss_pred CeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCE
Q 016480 129 SSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR 208 (389)
Q Consensus 129 g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~ 208 (389)
|.|+.|-....-. ............-..++......+.-..+|.|+.|-... ..+.
T Consensus 227 g~i~~~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~ 282 (425)
T 1r5m_A 227 GAIFVYQITEKTP-----------TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-------------GNSQ 282 (425)
T ss_dssp GCEEEEETTCSSC-----------SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-------------BSCS
T ss_pred CeEEEEEcCCCce-----------eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------------Cccc
Q ss_pred EecccCCcceEEEEccCc-eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECC
Q 016480 209 LVEALKGVPCKQVTAGLN-FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGN 287 (389)
Q Consensus 209 ~v~~~~~~~i~~i~~G~~-hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~ 287 (389)
.........|..++.... ..++...+|.|+.| +.........+........-..++.-....++-..+
T Consensus 283 ~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~-----------d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW-----------SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EEECCCSSCEEEEEEETTTEEEEEETTSEEEEE-----------ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred eEecCCCccEEEEEECCCCEEEEEeCCCcEEEE-----------ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Q ss_pred CcEEEEeCCCCCccCCCCCCCccccE------EeeccccCCc--cEEEEEecCC--eEEEEecCCcEEEE
Q 016480 288 GVVYSFGSGSNFCLGHGEQHDELQPR------AIQTFRRKGI--HVVRVSAGDE--HVVALDSSGYVYTW 347 (389)
Q Consensus 288 G~vy~wG~n~~gqLG~g~~~~~~~P~------~i~~~~~~~~--~v~~i~~G~~--hs~alt~~G~v~~w 347 (389)
|.|+.|-................... .+..+..... .|..++.... +.++...+|.|+.|
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=63.78 E-value=74 Score=27.70 Aligned_cols=195 Identities=9% Similarity=0.007 Sum_probs=97.1
Q ss_pred CCCcEEEEecCC----eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEE--------cCCCee
Q 016480 110 SAGNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS--------ASENHA 175 (389)
Q Consensus 110 ~~~i~~i~~G~~----h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~--------~G~~h~ 175 (389)
...|..++.... ..++. .+|.|..|-.....+. ...+. .....|..+. ......
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP-----------VYSVK-GHKEIINAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC-----------SEEEC-CCSSCEEEEEEESGGGCC-CCCEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc-----------EEEEE-ecccceEEEeeccccccCCCccEE
Confidence 345667766553 44444 7899999975532200 00111 1122565552 223345
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccC---CcceEEEE------ccCceEEEEeeCCcEEEeeCCCCc
Q 016480 176 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK---GVPCKQVT------AGLNFTGFLTIRGHVHTCGSNTHG 246 (389)
Q Consensus 176 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~---~~~i~~i~------~G~~hs~~lt~~G~v~~wG~n~~g 246 (389)
+.-..+|.|+.|-...... ....+.... ...+..++ ......++-..+|.|+.|-.....
T Consensus 133 ~~~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 133 VTGSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp EEEETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred EEEeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 5556789999997544210 111111111 22455655 233344445667899999543211
Q ss_pred cccCCCCCCCCCCeeecCCCCCCCEEEEEec-----CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC
Q 016480 247 QLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (389)
Q Consensus 247 qlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G-----~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~ 321 (389)
+....... ..|..++.. ....++-..+|.|+.|-..... ......... +...
T Consensus 202 ------------~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~---~~~~ 258 (357)
T 3i2n_A 202 ------------LRWETNIK--NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH------PTKGFASVS---EKAH 258 (357)
T ss_dssp ------------EEEEEECS--SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE------TTTEEEEEE---EECC
T ss_pred ------------eeeecCCC--CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC------cccceeeec---cCCC
Confidence 11111111 457777664 3455566778999988643310 000000011 1112
Q ss_pred CccEEEEEecCCe---EEEEecCCcEEEEeCC
Q 016480 322 GIHVVRVSAGDEH---VVALDSSGYVYTWGKG 350 (389)
Q Consensus 322 ~~~v~~i~~G~~h---s~alt~~G~v~~wG~n 350 (389)
...|..++..... .+.-..+|.|+.|=..
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 3357777765543 3445688999999753
No 50
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=62.70 E-value=34 Score=30.08 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.4
Q ss_pred CeeEEEECCeEEEEecC
Q 016480 121 YHTLLISNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (389)
.|++++.+++||++|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 45555588999999853
No 51
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.31 E-value=81 Score=27.60 Aligned_cols=161 Identities=16% Similarity=0.069 Sum_probs=90.4
Q ss_pred CEEEEEcC--CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc---CceEEEEeeCCcEE
Q 016480 164 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 238 (389)
Q Consensus 164 ~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~ 238 (389)
.+..+... .++.+++|++|++|.--..+.-.. ...- + ..++.+|+.+.+- ....+++|++|.+.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~--------~~~~--l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG--------SKVS--L-KSREEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS--------EECC--C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC--------cccc--c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 44444333 456889999999998653221100 0000 3 2346778888762 24677889999888
Q ss_pred EeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe--cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEee
Q 016480 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (389)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~ 316 (389)
-.-..++-+ ...-...-.+.+.+.++.+.. +..+.+++|++|++|.+-..+--.+|.+..- ++.-
T Consensus 94 r~~l~~~~~--------~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i 160 (276)
T 3no0_A 94 KIPLAEFEY--------KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGI 160 (276)
T ss_dssp EEEGGGTTT--------CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECC
T ss_pred EEEHHHhhh--------hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEE
Confidence 775444321 011111222323356666554 4456899999999999876554444432211 1111
Q ss_pred ccccCCccEEEEEec--CCeEEEEecCCcEEEEeC
Q 016480 317 TFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGK 349 (389)
Q Consensus 317 ~~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~ 349 (389)
.+. .+.+|+.+... ..+.+++|++|.+.-.=-
T Consensus 161 ~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 232 33467776554 345777899998776653
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=62.26 E-value=80 Score=27.55 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=74.6
Q ss_pred CcEEEEecCC-eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC--CCeeEEEEcCCcEEE
Q 016480 112 GNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (389)
Q Consensus 112 ~i~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~ 186 (389)
.|..++.... ..++. .+|.|+.|-..... ....+. .....|..++.. ..+.+....+|.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------RLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------hhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 4666665433 23333 78999999643211 111111 112257666654 345555677899999
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEeeC-----CcEEEeeCCCCccccCCCCCCCCCC
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIR-----GHVHTCGSNTHGQLGHGDTLDRPTP 259 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~-----G~v~~wG~n~~gqlG~~~~~~~~~p 259 (389)
|-....-. .. .+. ....|..++... ...++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~~---------~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQC---------VA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCCE---------EE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCcE---------EE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 97543111 10 111 122344444432 333344445 7888885433221100000001111
Q ss_pred eeecCCCCCCCEEEEEec--CceEEEEECCCcEEEEeCCC
Q 016480 260 KSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 260 ~~v~~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~ 297 (389)
..+........+..++.. ....++-..+|.|+.|-...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 222222221255555543 33455567788999986543
No 53
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=61.25 E-value=47 Score=28.83 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.1
Q ss_pred CeeEEEECCeEEEEecCC
Q 016480 121 YHTLLISNSSVFSCGSSL 138 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (389)
.|++++.+++||++|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 456555788999999643
No 54
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=59.42 E-value=38 Score=29.59 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=12.6
Q ss_pred CeeEEEECCeEEEEecC
Q 016480 121 YHTLLISNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (389)
.|++++.+++||++|-.
T Consensus 94 ~~~~~~~~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGS 110 (306)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEECCC
Confidence 45555588999999864
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=59.26 E-value=83 Score=26.73 Aligned_cols=145 Identities=6% Similarity=-0.120 Sum_probs=75.1
Q ss_pred CcEEEEecCCeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC--CCeeEEEEcCCcEEEE
Q 016480 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTC 187 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~w 187 (389)
.|..++.-....++. .||.|..|-.... + ....+.. ....|..++.. ....+.-..+|.|..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-W-----------LGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS-E-----------EEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC-E-----------EEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 466665422333444 8899999975321 0 1111111 12245555433 3445555677888887
Q ss_pred eCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCC
Q 016480 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE 267 (389)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 267 (389)
-...... .. ....+. .....|..++......+.-..+|.|+.|-. ++ ....+....
T Consensus 87 ~~~~~~~------~~---~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~----------~~~~~~~~~- 142 (313)
T 3odt_A 87 PLFATSG------ED---PLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS----------LVYNLQAHN- 142 (313)
T ss_dssp ETTCCTT------SC---C-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET---TE----------EEEEEECCS-
T ss_pred EeeecCC------CC---cccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc----------EEEecccCC-
Confidence 6543110 00 001111 123456777776666667788999999941 10 011111111
Q ss_pred CCCEEEEEe---cCceEEEEECCCcEEEEe
Q 016480 268 VGSVVQIAA---GPSYMLAVTGNGVVYSFG 294 (389)
Q Consensus 268 ~~~i~~I~~---G~~h~~~lt~~G~vy~wG 294 (389)
..+..+.. .....++-..+|.|+.|-
T Consensus 143 -~~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 143 -ASVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp -SCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred -CceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 34555554 456667777889999985
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.55 E-value=1.1e+02 Score=27.74 Aligned_cols=188 Identities=9% Similarity=0.006 Sum_probs=87.3
Q ss_pred CcEEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC--CCeeEEEEcCCcEEEEe
Q 016480 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCG 188 (389)
Q Consensus 112 ~i~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~wG 188 (389)
.|..++......+.- .+|.|+.|-....+. ....+. .....|..++.. ..+.+.-+.+|.|+.|-
T Consensus 178 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 178 RVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-----------QIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSSC-----------EEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceEEEEECCCEEEEEcCCCCEEEEecccCcc-----------eeeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 355555543333333 777788776542211 011111 112256666654 33444556789999997
Q ss_pred CCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEe---eCCcEEEeeCCCCccccCCCCCCCCCCeeec
Q 016480 189 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLT---IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (389)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt---~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~ 263 (389)
....- +..........|..++... .+.++.. .+|.|+.|-..... ....+.
T Consensus 246 ~~~~~-------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----------~~~~~~ 301 (401)
T 4aez_A 246 ARSSI-------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----------RVNTVD 301 (401)
T ss_dssp TTCSS-------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----------EEEEEE
T ss_pred CCCCC-------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----------EEEEEe
Confidence 55311 1110001122345555433 2333332 48889998543211 011111
Q ss_pred CCCCCCCEEEEEecCceEEEE--E--CCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEec--CCeEEE
Q 016480 264 PLEEVGSVVQIAAGPSYMLAV--T--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVA 337 (389)
Q Consensus 264 ~~~~~~~i~~I~~G~~h~~~l--t--~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G--~~hs~a 337 (389)
....|..++...+...++ . .+|.|+.|-.... . ...+..+......|..++.. ..+.+.
T Consensus 302 ---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~----------~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 302 ---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS----------G--LTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT----------E--EEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred ---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc----------c--ceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 114566666544332222 2 5888888864321 0 11111111122245555544 334444
Q ss_pred EecCCcEEEEeCC
Q 016480 338 LDSSGYVYTWGKG 350 (389)
Q Consensus 338 lt~~G~v~~wG~n 350 (389)
...||.|..|=-.
T Consensus 367 ~~~dg~i~iw~~~ 379 (401)
T 4aez_A 367 AASDENLKFWRVY 379 (401)
T ss_dssp ECTTSEEEEEECC
T ss_pred EeCCCcEEEEECC
Confidence 5678888888643
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=55.43 E-value=1e+02 Score=26.74 Aligned_cols=66 Identities=15% Similarity=-0.009 Sum_probs=34.0
Q ss_pred CcEEEEecC--CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC--CeeEEEEcC-----
Q 016480 112 GNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQS----- 181 (389)
Q Consensus 112 ~i~~i~~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~----- 181 (389)
.|..++... ...+.. .||.|+.|-..... ....+. ....|..++... ...++...+
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ------------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 466666542 333334 88999999654211 111122 222455555443 334444455
Q ss_pred CcEEEEeCCC
Q 016480 182 GQVFTCGDNS 191 (389)
Q Consensus 182 G~vy~wG~n~ 191 (389)
|.|+.|-...
T Consensus 142 g~i~~~d~~~ 151 (369)
T 3zwl_B 142 GSINIYEIER 151 (369)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEEecC
Confidence 8888887544
No 58
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=53.55 E-value=1.1e+02 Score=26.52 Aligned_cols=148 Identities=10% Similarity=-0.073 Sum_probs=80.1
Q ss_pred CCEEEEEcCCC-----eeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEeeCC
Q 016480 163 AHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRG 235 (389)
Q Consensus 163 ~~i~~i~~G~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~G 235 (389)
..|..|+.... ..+.-..+|.|..|-....++ .....+.. ....|..++... ...+.-+.+|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 37888887754 334446689999997654221 11111111 133466665543 3444556789
Q ss_pred cEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe--cCc--eEEEEECCCcEEEEeCCCCCccCCCCCCCccc
Q 016480 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ 311 (389)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~--G~~--h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~ 311 (389)
.|..|-..... +..+... ...|..++. ..+ ..+.-..+|.|+.|=....- .
T Consensus 109 ~v~iwd~~~~~------------~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ------------AIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----------P 163 (368)
T ss_dssp EEEEEETTTTE------------EEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------C
T ss_pred cEEEEEcCCCC------------ceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------E
Confidence 99999544211 1111111 146777765 332 34455678999999643311 0
Q ss_pred cEEeeccccCCccEEEEEecCCeEEEEecCCcEEEEeCC
Q 016480 312 PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 312 P~~i~~~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 350 (389)
-..+.. ...+..+..-....++.+.++.+..|-..
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 MMVLQL----PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp SEEEEC----SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred EEEEec----CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 111111 11455555556677777788888888653
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=52.62 E-value=2.4e+02 Score=30.02 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=73.0
Q ss_pred CEEEEEcCC-CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc--cCceEEEEeeCCcEEEe
Q 016480 164 HVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 240 (389)
Q Consensus 164 ~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~w 240 (389)
.|..++... ...++...+|.|+.|-....-. ...+... ...|..++. .....+.-+.+|.|+.|
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------------~~~~~~~-~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI------------ERDFTCH-QGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTTCC------------CEEEECC-SSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCCce------------eEEEccc-CCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 566665443 3445567789999997643110 0111111 112333333 22334445667888888
Q ss_pred eCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCc--eEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEee-c
Q 016480 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ-T 317 (389)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~-~ 317 (389)
-...... ...+.... ..|..++...+ ..+.-..+|.|+.|-......+. ...|.... .
T Consensus 1113 d~~~~~~-----------~~~l~~h~--~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~ 1173 (1249)
T 3sfz_A 1113 SFDLLSP-----------LHELKGHN--GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEG 1173 (1249)
T ss_dssp CSSSSSC-----------SBCCCCCS--SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC----
T ss_pred ECCCcce-----------eeeeccCC--CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------Eecccccccc
Confidence 4332111 11111111 35666665443 34445678888888654422111 11111110 0
Q ss_pred cccCCccEEEEEecCCeEEEEecCCcEEEEeCCC
Q 016480 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 318 ~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 351 (389)
.......|..++...+...+++.+|.|..|-...
T Consensus 1174 ~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1174 TATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp ---CCSCCCEEEECTTSSCEEEESSSEEEBCSSS
T ss_pred ccccCceEEEEEECCCCCEEEECCCeEEEEECCC
Confidence 1112224666666555544555568899986543
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=52.45 E-value=3.3 Score=40.68 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccccCChHHHHHHHHhCCCC-ccccccccccccccc
Q 016480 9 SIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFG 43 (389)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~-~~dl~~l~~t~~~f~ 43 (389)
.+.+||+||+..|| .+|+ .+|+.....+|+.+.
T Consensus 5 ~~~~LPdevL~~If--~~L~~~~d~~~~s~vck~W~ 38 (594)
T 2p1m_B 5 IALSFPEEVLEHVF--SFIQLDKDRNSVSLVCKSWY 38 (594)
T ss_dssp -----CHHHHHHHH--HTCCCHHHHHHHHTSCHHHH
T ss_pred chhhCCHHHHHHHH--hhcCCchhHHHHHHHHHHHH
Confidence 46789999999999 8999 999999999998764
No 61
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=51.62 E-value=1.2e+02 Score=26.17 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=73.8
Q ss_pred CEEEEEcC-CCeeEEEEcCCc-EEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCc-EEEe
Q 016480 164 HVVQVSAS-ENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGH-VHTC 240 (389)
Q Consensus 164 ~i~~i~~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~-v~~w 240 (389)
++.-..++ ....++++.+|+ ++.++.... . . .....|..+....+-.+.-...+.....+++.+|+ +|.+
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~----~--~-~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETG----I--E-RPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCS----C--S-SGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCC----C--C-cccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEE
Confidence 44444455 445556677776 456654221 0 0 00111222222223333333334444556666664 4555
Q ss_pred eCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECC-C-cEEEEeCCCCCccCCCCCCCccccEEeecc
Q 016480 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGN-G-VVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (389)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~-G-~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~ 318 (389)
+.. ..|.-+..+.+ .++.-........++++.+ | .+|.++.+... ......|.-+..+
T Consensus 162 ~~~-------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~~ 221 (276)
T 3no2_A 162 KLS-------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFPL 221 (276)
T ss_dssp ECS-------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEEC
T ss_pred ECC-------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceEc
Confidence 432 12222333332 3454333333446677777 6 44666643210 0012234444433
Q ss_pred ccCCccEEEEEe--c---------CCeEEEEecCCcEEEEeCCCCCCCCC
Q 016480 319 RRKGIHVVRVSA--G---------DEHVVALDSSGYVYTWGKGYCGALGH 357 (389)
Q Consensus 319 ~~~~~~v~~i~~--G---------~~hs~alt~~G~v~~wG~n~~GqLG~ 357 (389)
... .+ -|+. | ..+.+.++.+|+| .|=.+.....|.
T Consensus 222 ~~G--~i-~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 222 QNG--GL-YICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp TTS--CE-EEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CCC--CE-EEEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 322 23 3443 2 3358888889886 666665555554
No 62
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.74 E-value=1.5e+02 Score=26.70 Aligned_cols=211 Identities=11% Similarity=0.048 Sum_probs=111.1
Q ss_pred cCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC-----CeeEEEEcCCcEEEEeCCCC
Q 016480 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSS 192 (389)
Q Consensus 119 G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~~ 192 (389)
...+.+++ +.|++|..-..+--..+...... .-...+++....+|+.+.+.. ...+++|++|.+.-.-...+
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 34445556 99999988754322222111111 111234555666888886654 45788899998887764442
Q ss_pred CcccCCCCCCceecCEEeccc-CCcceEE--EEccCceEEEEeeCCcEEEeeCC--CCccccCCCCCCCCCCeeecCCCC
Q 016480 193 FCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSN--THGQLGHGDTLDRPTPKSIAPLEE 267 (389)
Q Consensus 193 gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~hs~~lt~~G~v~~wG~n--~~gqlG~~~~~~~~~p~~v~~~~~ 267 (389)
-.-. ..-.....+ ++..++. +..+..+.+++|++|++|.+-.. +--..|....- .++-.+..
T Consensus 130 ~~~~--------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L~~ 196 (327)
T 3uc1_A 130 DSNR--------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRFNI 196 (327)
T ss_dssp CCCC--------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCCCT
T ss_pred hccc--------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecCCC
Confidence 2100 001111111 2333333 33466778889999999998766 43333322111 11222333
Q ss_pred CCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE--ecCCeEEEEecCCc
Q 016480 268 VGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALDSSGY 343 (389)
Q Consensus 268 ~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~--~G~~hs~alt~~G~ 343 (389)
.+.|+.+..-. .+.+++|++|.+.-.-..++-..+.+.. -...-.+..++..++.+. .+....+++|++|+
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~ 271 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGG 271 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGC
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCe
Confidence 46788877653 4678889999766554333321111111 011111111122344433 35678889999999
Q ss_pred EEEEeC
Q 016480 344 VYTWGK 349 (389)
Q Consensus 344 v~~wG~ 349 (389)
+.-+-.
T Consensus 272 ~ir~~~ 277 (327)
T 3uc1_A 272 VIRTAA 277 (327)
T ss_dssp EEEEEG
T ss_pred EEEEeh
Confidence 988743
No 63
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=49.72 E-value=74 Score=27.55 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.6
Q ss_pred CeeEEEECCeEEEEecC
Q 016480 121 YHTLLISNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (389)
.|++++-++++|++|-.
T Consensus 101 ~~~~~~~~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAVLNGLLYAVGGF 117 (302)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ceEEEEECCEEEEEcCC
Confidence 46655578899999853
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=48.97 E-value=1.4e+02 Score=26.36 Aligned_cols=209 Identities=9% Similarity=0.037 Sum_probs=100.3
Q ss_pred CcEEEEecC--CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecC----CCCCCEEEEEcC---CCeeEEEEc
Q 016480 112 GNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF----PSAAHVVQVSAS---ENHAAFVLQ 180 (389)
Q Consensus 112 ~i~~i~~G~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~----~~~~~i~~i~~G---~~h~~~lt~ 180 (389)
.|..++... ...++. .||.|..|-.........-. ......... .....|..++.. ....+.-..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT----CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE----ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe----ccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 466666543 233333 79999999765332211100 000001110 122367777753 345555677
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC-----ceEEEEeeCCcEEEeeCCCCccccCCCCCC
Q 016480 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (389)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~ 255 (389)
+|.|..|-...... ...+. . ...+..+.... ...++-..+|.|+.|-....
T Consensus 121 d~~i~iwd~~~~~~------------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---------- 176 (408)
T 4a11_B 121 DKTLKVWDTNTLQT------------ADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---------- 176 (408)
T ss_dssp TSEEEEEETTTTEE------------EEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------
T ss_pred CCeEEEeeCCCCcc------------ceecc-C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------
Confidence 99999997543110 00111 1 12234443322 13445577899999954321
Q ss_pred CCCCeeecCCCCCCCEEEEEecCce---EEEEECCCcEEEEeCCCCCcc-CCCCCCC-ccccEEeeccccCCccEEEEEe
Q 016480 256 RPTPKSIAPLEEVGSVVQIAAGPSY---MLAVTGNGVVYSFGSGSNFCL-GHGEQHD-ELQPRAIQTFRRKGIHVVRVSA 330 (389)
Q Consensus 256 ~~~p~~v~~~~~~~~i~~I~~G~~h---~~~lt~~G~vy~wG~n~~gqL-G~g~~~~-~~~P~~i~~~~~~~~~v~~i~~ 330 (389)
.....+.... ..|..++..... .+.-..+|.|+.|-....... -.-.... ................|..++.
T Consensus 177 -~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 177 -SCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp -CCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred -ceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 1112222221 457777665432 445678899999976442211 0000000 0000000011112235777766
Q ss_pred cC--CeEEEEecCCcEEEEeCCC
Q 016480 331 GD--EHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 331 G~--~hs~alt~~G~v~~wG~n~ 351 (389)
.. .+.++...+|.|..|=...
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEecCCCeEEEEECCC
Confidence 43 3555567899999997543
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=47.99 E-value=1.3e+02 Score=25.64 Aligned_cols=119 Identities=7% Similarity=-0.127 Sum_probs=60.3
Q ss_pred CcEEEEecCC-eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC----CeeEEEEcCCcE
Q 016480 112 GNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSGQV 184 (389)
Q Consensus 112 ~i~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~----~h~~~lt~~G~v 184 (389)
.|..++-... ..++. .||.|..|-...... . ......+. .....|..++... ...+.-..||.|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~--~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------N--WELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------C--EEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------c--ceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3666664332 23333 789999997543210 0 00111111 1223687777643 344555778999
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc----eEEEEeeCCcEEEeeCC
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN----FTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~----hs~~lt~~G~v~~wG~n 243 (389)
..|-......... .....+..........|..++.... ..+..+.+|.|+.|-..
T Consensus 84 ~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 84 KLWEEDPDQEECS----GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEEECTTSCTTS----SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEecCCCccccc----ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 9998654211100 0011111111112345777776643 45556778999999643
No 66
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=47.59 E-value=1.5e+02 Score=26.25 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=88.2
Q ss_pred EEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc-----cCceEEEEeeCCcEEEeeC
Q 016480 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTCGS 242 (389)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~hs~~lt~~G~v~~wG~ 242 (389)
++.+.++.+++|+.|++|..-..+--..+...... .....+...++.+|+.+.. ...+.+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR--PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE--EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe--EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 45667889999999999998865533333211111 1111122224556776654 2234677799998876643
Q ss_pred CCCccccCCCCCCCCCCeeecCCCCCCCEEEEE--ecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecccc
Q 016480 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (389)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~ 320 (389)
.++-.. . ..-...-.+.+...++.+. .+..+.+++|++|+++-+-..+--.+|.... -.+.-.+.
T Consensus 127 ~e~~~~------~-r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-----Gv~~i~L~- 193 (307)
T 1zi0_A 127 TEFNRL------R-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-----GVRGIRLG- 193 (307)
T ss_dssp GGGTTC------C-TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCC-
T ss_pred HHhhcc------c-cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-----CeEeEEeC-
Confidence 322111 0 1111111222224555543 3567899999999999887655444443211 11222232
Q ss_pred CCccEEEEEec--CCeEEEEecCCcEEEE
Q 016480 321 KGIHVVRVSAG--DEHVVALDSSGYVYTW 347 (389)
Q Consensus 321 ~~~~v~~i~~G--~~hs~alt~~G~v~~w 347 (389)
.+..|+.+..- ....++++++|.+--.
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRT 222 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEE
Confidence 34467776543 2345667888765444
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=46.73 E-value=2.3e+02 Score=28.18 Aligned_cols=173 Identities=7% Similarity=0.001 Sum_probs=84.5
Q ss_pred ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC--eeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 016480 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (389)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (389)
.+|.|+.|-...... ...+. .....|..++...+ ..+.-..+|.|..|-.....
T Consensus 75 ~dg~i~vw~~~~~~~------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------- 130 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEK------------VVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------- 130 (814)
T ss_dssp TTSEEEEEETTTCCE------------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----------
T ss_pred CCCeEEEEECCCCcE------------EEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----------
Confidence 789999997543211 11111 11225666665433 34445678889998653211
Q ss_pred ecCEEecccCCcceEEEEccC---ceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe----c
Q 016480 205 FRPRLVEALKGVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA----G 277 (389)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~---~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~----G 277 (389)
.....+.. ....|..++... ...+.-+.+|.|+.|-.... .....+..... ..+..++. .
T Consensus 131 ~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~~~~~-~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 131 ALEQTFEG-HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQE-RGVNYVDYYPLPD 197 (814)
T ss_dssp EEEEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEECCCT-TCCCEEEECCSTT
T ss_pred eEEEEEcC-CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEecCCC-CCEEEEEEEECCC
Confidence 01111111 223466666543 33444567899999954321 11111111110 22333333 3
Q ss_pred CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC--eEEEEecCCcEEEEeCC
Q 016480 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKG 350 (389)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~--hs~alt~~G~v~~wG~n 350 (389)
....++-..+|.|+.|-.... ..+..+......|..++.... ..+.-..+|.|+.|-..
T Consensus 198 ~~~l~~~~~dg~i~~~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQTK--------------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CCEEEEECTTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECCCC--------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 345555667889999954321 111112112224666655433 34445667888888644
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=46.15 E-value=1.5e+02 Score=25.84 Aligned_cols=200 Identities=11% Similarity=0.001 Sum_probs=98.4
Q ss_pred CCcEEEEec-C--CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC----CeeEEEEcC
Q 016480 111 AGNMQITTG-R--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQS 181 (389)
Q Consensus 111 ~~i~~i~~G-~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~----~h~~~lt~~ 181 (389)
..|..++-. . ...++. .||.|..|-..... ..+..........|..++... ...+.-..+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 346677653 1 233443 78999999654210 011111111223677777653 345556788
Q ss_pred CcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC---------------ceEEEEeeCCcEEEeeCCCCc
Q 016480 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---------------NFTGFLTIRGHVHTCGSNTHG 246 (389)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---------------~hs~~lt~~G~v~~wG~n~~g 246 (389)
|.|..|-...... ..+..+. .....|..++... ...++-..+|.|+.|-.....
T Consensus 125 ~~i~v~d~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 125 GKVSVVEFKENGT----------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp SEEEEEECCTTSC----------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEecCCCCc----------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 9999997654211 0111111 1123455555433 344455678999999432110
Q ss_pred cccCCCCCCCCCCeeecCCCCCCCEEEEEecC-----ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC
Q 016480 247 QLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (389)
Q Consensus 247 qlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~-----~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~ 321 (389)
+. ......+... ...|..++... ...+....+|.|..|-..... ......+......
T Consensus 194 ~~-------~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 194 QT-------YVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ---------GPWKKTLLKEEKF 255 (379)
T ss_dssp TE-------EEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT---------SCCEEEESSSSCC
T ss_pred cc-------eeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC---------ccceeeeeccccC
Confidence 00 0000111111 14577777653 345556778999999654311 0001111111112
Q ss_pred CccEEEEEecCC--eEEEEecCCcEEEEeCC
Q 016480 322 GIHVVRVSAGDE--HVVALDSSGYVYTWGKG 350 (389)
Q Consensus 322 ~~~v~~i~~G~~--hs~alt~~G~v~~wG~n 350 (389)
...|..++.... +.++-..+|.|+.|=.+
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 224666665433 44445688999999644
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=45.36 E-value=5.5 Score=39.04 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=28.3
Q ss_pred cccCChHHHHHHHHhCCC-Cccccccccccccccc
Q 016480 10 IEELPSHLIFEILTSGRL-SAVDLAHLELTSKTFG 43 (389)
Q Consensus 10 ~~~lp~~i~~~~~~~~~l-~~~dl~~l~~t~~~f~ 43 (389)
..+||+||+.+|| .+| +++|+.....+|+.|.
T Consensus 13 ~~~LPdeil~~I~--~~L~~~~d~~~~s~vck~W~ 45 (592)
T 3ogk_B 13 CVATVDDVIEQVM--TYITDPKDRDSASLVCRRWF 45 (592)
T ss_dssp CCCCGGGTHHHHH--TTCCCHHHHHHHTTSCHHHH
T ss_pred cCCCCHHHHHHHH--HhcCCHHHHHHHHHHhHHHH
Confidence 4589999999999 899 8999999999998653
No 70
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=44.62 E-value=1.7e+02 Score=25.99 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=91.8
Q ss_pred CcEEEEecCC-eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC---CCeeEEEEcCCcEE
Q 016480 112 GNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVF 185 (389)
Q Consensus 112 ~i~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~~G~vy 185 (389)
.|..|+.-.. ..++. .||.|..|-.... + ....+.. ....|..|+.. ....+.-..||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~-----------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A-----------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT-E-----------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-----------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceE
Confidence 3666665432 22333 7888888854321 1 1111111 12257777653 23344556789999
Q ss_pred EEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEE-EeeCCcEEEeeCCCCccccCCCCCCCCCCeee
Q 016480 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGF-LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (389)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~-lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (389)
.|-....-.+... ........+..|+... .+.++ -+.++.|+.|-.... + ....+
T Consensus 208 ~wd~~~~~~~~~~-----------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~ 265 (357)
T 4g56_B 208 LWDTRKPKPATRI-----------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTS 265 (357)
T ss_dssp ECCTTSSSCBCBC-----------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEE
T ss_pred EEECCCCceeeee-----------eeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEE
Confidence 9854321110000 0001123455665432 23333 367889999954321 1 11122
Q ss_pred cCCCCCCCEEEEEecC---ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecC---CeEE
Q 016480 263 APLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVV 336 (389)
Q Consensus 263 ~~~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~---~hs~ 336 (389)
.... ..|..++... ...+.-..||.|+.|=... + ..+..+. -...|..|+.-. ...+
T Consensus 266 ~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~-------------~~~~~~~-H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 266 AVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADF-S-------------EVFRDLS-HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTS-C-------------EEEEECC-CSSCEEEEEECSSSTTEEE
T ss_pred eccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-C-------------cEeEECC-CCCCEEEEEEeCCCCCEEE
Confidence 2222 4677777542 3344456789999994321 1 1122222 123578887642 2333
Q ss_pred EEecCCcEEEEeCCC
Q 016480 337 ALDSSGYVYTWGKGY 351 (389)
Q Consensus 337 alt~~G~v~~wG~n~ 351 (389)
.-..||.|+.|=-..
T Consensus 329 s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 329 TVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEETTSCEEEEECC-
T ss_pred EEcCCCeEEEEECCC
Confidence 346789999996443
No 71
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.39 E-value=1.2e+02 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=13.6
Q ss_pred CceEEEEeeCCcEEEeeCC
Q 016480 225 LNFTGFLTIRGHVHTCGSN 243 (389)
Q Consensus 225 ~~hs~~lt~~G~v~~wG~n 243 (389)
..|++++ .+++||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 78999999953
No 72
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=41.05 E-value=1.2e+02 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=13.0
Q ss_pred CCeeEEEECCeEEEEecC
Q 016480 120 RYHTLLISNSSVFSCGSS 137 (389)
Q Consensus 120 ~~h~~~l~~g~vy~wG~n 137 (389)
..|+++..+++||++|-.
T Consensus 140 ~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEEETTEEEEECCB
T ss_pred cceeEEEECCEEEEEeCC
Confidence 345555588899999964
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=40.47 E-value=1.7e+02 Score=24.92 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=70.3
Q ss_pred CcEEEEecCCe-eEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC--eeEEEEcCCcEEE
Q 016480 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVFT 186 (389)
Q Consensus 112 ~i~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--h~~~lt~~G~vy~ 186 (389)
.|..++-.... .++. .||.|..|...... ....+ ......|..++...+ ..+.-..+|.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------FEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------cchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 36566544322 2333 78999999754211 01111 111225666665433 3444467888999
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecC
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (389)
|-...... . ..+.. ....|..++... ...+.-..+|.|..|-..... ....+..
T Consensus 92 wd~~~~~~---------~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~ 147 (312)
T 4ery_A 92 WDVSSGKC---------L---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------CLKTLPA 147 (312)
T ss_dssp EETTTCCE---------E---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------EEEEECC
T ss_pred EECCCCcE---------E---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------EEEEecC
Confidence 96543110 0 11111 122344444332 333444668889888542211 0111211
Q ss_pred CCCCCCEEEEEecC--ceEEEEECCCcEEEEeCC
Q 016480 265 LEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 265 ~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 296 (389)
.. ..|..++... ...+.-..+|.|..|-..
T Consensus 148 ~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 148 HS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp CS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 11 3566665543 344555678888888643
No 74
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=39.98 E-value=3e+02 Score=27.54 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=79.5
Q ss_pred CCcEEEEecC---CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC----CeeEEEEcC
Q 016480 111 AGNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQS 181 (389)
Q Consensus 111 ~~i~~i~~G~---~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~----~h~~~lt~~ 181 (389)
..|..++-.. ...++. .||.|+.|-.... + ..+..........|..++... ...+.-+.+
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 3477776532 334444 8899999974421 0 011111112223677777653 355566788
Q ss_pred CcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC---------------ceEEEEeeCCcEEEeeCCCCc
Q 016480 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---------------NFTGFLTIRGHVHTCGSNTHG 246 (389)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---------------~hs~~lt~~G~v~~wG~n~~g 246 (389)
|.|+.|-...... ..+..+.. ....|..++... ...+.-..+|.|+.|-.....
T Consensus 123 g~I~vwdl~~~~~----------~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 123 GKVSVVEFKENGT----------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp SEEEEEECCSSSC----------CCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEEeecCCC----------cceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 9999997654211 01111111 122345554432 344455678999999543210
Q ss_pred cccCCCCCCCCCC-eeecCCCCCCCEEEEEecC-----ceEEEEECCCcEEEEeCCC
Q 016480 247 QLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGS 297 (389)
Q Consensus 247 qlG~~~~~~~~~p-~~v~~~~~~~~i~~I~~G~-----~h~~~lt~~G~vy~wG~n~ 297 (389)
+ ...+ ..+... ...|..++... ...+.-..+|.|+.|-...
T Consensus 192 ~--------~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 192 Q--------TYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp T--------EEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred c--------cceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 0 0011 111111 14677777653 3455566789999996543
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=39.17 E-value=1.8e+02 Score=24.71 Aligned_cols=77 Identities=9% Similarity=-0.117 Sum_probs=42.2
Q ss_pred CCcEEEEecC---CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC----eeEEEEcC
Q 016480 111 AGNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN----HAAFVLQS 181 (389)
Q Consensus 111 ~~i~~i~~G~---~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~----h~~~lt~~ 181 (389)
..|..++-.. ...++. .||.|..|-........... ...+..........|..++.... ..+.-+.+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR----RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC----SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc----CcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 3477777543 344444 88999999865432111000 00111111122336888877643 45556789
Q ss_pred CcEEEEeCCC
Q 016480 182 GQVFTCGDNS 191 (389)
Q Consensus 182 G~vy~wG~n~ 191 (389)
|.|+.|-...
T Consensus 134 g~v~iwd~~~ 143 (351)
T 3f3f_A 134 GILRLYDALE 143 (351)
T ss_dssp CEEEEEECSS
T ss_pred CcEEEecCCC
Confidence 9999997554
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=38.99 E-value=1.9e+02 Score=24.86 Aligned_cols=202 Identities=8% Similarity=-0.082 Sum_probs=100.7
Q ss_pred CcEEEEecC--CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC--CC-eeEEEEcCCcEE
Q 016480 112 GNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--EN-HAAFVLQSGQVF 185 (389)
Q Consensus 112 ~i~~i~~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~-h~~~lt~~G~vy 185 (389)
.|..++-.. ...++- .+|.|+.|-..... . ...+... ......|..++.. .. ..+.-..+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------K-NVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------T-EEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------c-cccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 355555432 223333 78999999754321 0 0011111 1222356666543 33 555567789999
Q ss_pred EEeC-CCCCcccCCCCCCceecCEEeccc-CCcceEEEEcc-CceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeee
Q 016480 186 TCGD-NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (389)
Q Consensus 186 ~wG~-n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G-~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (389)
.|-. .. +++ ..+... ....|..++.. ....+....+|.|+.|-..... .........+ +
T Consensus 83 ~wd~~~~-~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~--~ 144 (342)
T 1yfq_A 83 KVDLIGS-PSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG---DGVIAVKNLN--S 144 (342)
T ss_dssp EECSSSS-SSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT---TBCEEEEESC--S
T ss_pred EEEeccC-Cce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccc---cccccccCCe--e
Confidence 9965 32 211 112210 12345555543 4455556778999999432100 0000000001 1
Q ss_pred cCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecC---CeEEEEe
Q 016480 263 APLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALD 339 (389)
Q Consensus 263 ~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~---~hs~alt 339 (389)
..+.....|..++...+..++-+.+|.|+.|-....+. ......... ....|..|+.-. ...++-.
T Consensus 145 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESG--LKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECS--CSSCEEEEEECSGGGCEEEEEE
T ss_pred eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecC--CCCceeEEEECCCCCCEEEEEe
Confidence 11112257888888877777778899999997643111 011111111 122466666543 4555567
Q ss_pred cCCcEEEEeCCCC
Q 016480 340 SSGYVYTWGKGYC 352 (389)
Q Consensus 340 ~~G~v~~wG~n~~ 352 (389)
.+|.|..|=....
T Consensus 214 ~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 214 IDGRVAVEFFDDQ 226 (342)
T ss_dssp TTSEEEEEECCTT
T ss_pred cCCcEEEEEEcCC
Confidence 8888888876543
No 77
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.83 E-value=2.1e+02 Score=25.50 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc-----eEEEEeeCCcEEEe
Q 016480 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-----FTGFLTIRGHVHTC 240 (389)
Q Consensus 166 ~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-----hs~~lt~~G~v~~w 240 (389)
..++.+.++.+++|+.|++|..-...--..+......+ ....+...++.+|+.+..-.. +.+++|++|.+.-.
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Q ss_pred eCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe--cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecc
Q 016480 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (389)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~ 318 (389)
-..++ .......-...-.+.+...++.+.. +.++.+++|++|+++-+-.++--..|. ....++.-.+
T Consensus 122 ~l~e~------~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR-----~a~GV~~i~L 190 (323)
T 1wp5_A 122 ELKHY------KAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV-----RAAGVKGMNL 190 (323)
T ss_dssp EGGGG------CCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS-----SCCCEECCCC
T ss_pred EHHHh------hhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC-----CCcCEEEEEe
Q ss_pred ccCCccEEEEEecCC---eEEEEecCC
Q 016480 319 RRKGIHVVRVSAGDE---HVVALDSSG 342 (389)
Q Consensus 319 ~~~~~~v~~i~~G~~---hs~alt~~G 342 (389)
. .+..|+.+..=.. ..+.++++|
T Consensus 191 ~-~~d~Vv~~~~~~~~~~~ll~vt~~G 216 (323)
T 1wp5_A 191 K-EGDYIVSGQLITSKDESIVVATQRG 216 (323)
T ss_dssp C-TTCCEEEEEEECCTTCEEEEEETTS
T ss_pred C-CCCEEEEEEEEcCCCcEEEEEECCC
No 78
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=38.34 E-value=1.7e+02 Score=24.21 Aligned_cols=178 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred eeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCCeeEEEEc--CCcEEEEeCCCCCcccCC
Q 016480 122 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQ--SGQVFTCGDNSSFCCGHR 198 (389)
Q Consensus 122 h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~--~G~vy~wG~n~~gqlG~~ 198 (389)
+.+++ .+|++|+... ...-.-...... ....+.......+..|+...+..+.+++ ++.|+.|-...
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~------- 138 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSN---NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS------- 138 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCS---CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-------
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCc---eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-------
Q ss_pred CCCCceecCEEecccCCcceEEEEcc--CceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEe
Q 016480 199 DTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 276 (389)
Q Consensus 199 ~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~ 276 (389)
.........+ .-+.++++.+|++|.-........-...............+
T Consensus 139 ----------------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------- 191 (270)
T 1rwi_B 139 ----------------KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI----------- 191 (270)
T ss_dssp ----------------CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-----------
T ss_pred ----------------ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC-----------
Q ss_pred cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecC---CeEEEEecCCcEEEEeCCCC
Q 016480 277 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYC 352 (389)
Q Consensus 277 G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~---~hs~alt~~G~v~~wG~n~~ 352 (389)
..-..++++.+|.+|.-..... .|..+...+..+..+.... -+.++++.+|++|.-.....
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~---------------~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTN---------------QVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTS---------------CEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred CCceEEEECCCCCEEEEECCCC---------------cEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
No 79
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.27 E-value=1.9e+02 Score=24.80 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred EEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc--CceEEEEeeCCcEEEeeCCCC
Q 016480 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTH 245 (389)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~ 245 (389)
.+...++.+++|+.|++|..-..+.-.. . . .-......+....+.+|+.+... ..+.+++|++|.+.-.-..++
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r--~-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSA-R--G-QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCS-S--S-CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--C-CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 3445677899999999999876542110 0 0 00111112233346678877663 334677899998876654433
Q ss_pred ccccCCCCCCCCCCeeecCCCCCCCEEEEE---ecCceEEEEECCCcEEEEeCCCCCccCC
Q 016480 246 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIA---AGPSYMLAVTGNGVVYSFGSGSNFCLGH 303 (389)
Q Consensus 246 gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~---~G~~h~~~lt~~G~vy~wG~n~~gqLG~ 303 (389)
-.. ...-..+-.+.....++.+. .+..+.+++|++|.+.-+-.++.-.+|.
T Consensus 116 ~~~-------~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 116 VAR-------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCC-------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ccc-------CcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 110 01111121222223343322 3577899999999998887766544443
No 80
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=36.57 E-value=1.5e+02 Score=23.07 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=61.3
Q ss_pred ceeecCCCcEEEEecC-CeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC-CCeeEEEEcC
Q 016480 105 DIVETSAGNMQITTGR-YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-ENHAAFVLQS 181 (389)
Q Consensus 105 ~~v~~~~~i~~i~~G~-~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G-~~h~~~lt~~ 181 (389)
.+.+......++-|-. .+.+.+ .||.|-.-..... ........++.. .++.|-|- ..+.+++..+
T Consensus 24 ~~~~~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~--------~~s~lei~sv~~----G~V~L~g~~sg~yL~mn~~ 91 (142)
T 3p6j_A 24 QISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD--------THIQFQISPEGN----GEVLLKSTETGQYLRINPD 91 (142)
T ss_dssp EEEECSTTCEEEEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEEEET----TEEEEEETTTTEEEEECTT
T ss_pred EECcccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC--------CceEEEEEEccC----CEEEEEEecCCEEEeECCC
Confidence 3455666788998865 556667 8999985533211 011112223322 46777664 4677888999
Q ss_pred CcEEEEeCCCCCcccCCCCCCceecCEEecc--cCCcceEEEEccCceEEEEeeCCcEEE
Q 016480 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA--LKGVPCKQVTAGLNFTGFLTIRGHVHT 239 (389)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~hs~~lt~~G~v~~ 239 (389)
|+||+--... .. .....+.. .-...|..+..|+ -++++.+|++|.
T Consensus 92 G~l~Gs~~~t---------~e--csflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 92 GTVDGTRDRS---------DT--HIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp SBEEEECCTT---------CG--GGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CCEeecccCC---------CC--ceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 9999742211 01 11112111 1222334444454 789999999986
No 81
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=36.48 E-value=2.8e+02 Score=26.19 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=56.1
Q ss_pred CEEEEEcCCC---eeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecc---cCCcceEEEEcc-CceEEEEeeCCc
Q 016480 164 HVVQVSASEN---HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA---LKGVPCKQVTAG-LNFTGFLTIRGH 236 (389)
Q Consensus 164 ~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~---~~~~~i~~i~~G-~~hs~~lt~~G~ 236 (389)
.|..++...+ ..+.-+.+|.|+.|-....-.+ ..+.. .....|..++.. ....+....+|.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL------------KYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE------------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe------------EEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence 5777776543 4444577899999975431110 11100 122345555553 334444566889
Q ss_pred EEEeeCCCCccccCCCCCCCCCCeeecCCC--CCCCEEEEEe-cCceEEEEECCCcEEEEeCC
Q 016480 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLE--EVGSVVQIAA-GPSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 237 v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~~i~~I~~-G~~h~~~lt~~G~vy~wG~n 296 (389)
|..|-......+ ..+.... ....+..+.. .....++-+.+|.++.|-..
T Consensus 276 i~~wd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 276 IRVWDVTTSKCV-----------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEETTTTEEE-----------EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCcEE-----------EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 999965422111 0111100 0012333332 55566777888899988654
No 82
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=36.39 E-value=2e+02 Score=24.48 Aligned_cols=148 Identities=10% Similarity=0.120 Sum_probs=69.6
Q ss_pred CEEEEEcCC--CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc--cCceEEEEeeCCcEEE
Q 016480 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHT 239 (389)
Q Consensus 164 ~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~hs~~lt~~G~v~~ 239 (389)
.|..++... ...+.-..+|.|..|-....-. ...+.......+..++. ...+.++-+.+|.|..
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 218 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 566665543 3444456788888886543110 01111111223444443 3344555677899999
Q ss_pred eeCCCCccccCCCCCCCCCCeeecCCCCCC-CE-EEEE-ecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEee
Q 016480 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVG-SV-VQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (389)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~-~i-~~I~-~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~ 316 (389)
|-......+. .+....... .+ .... .+..+.+.-..+|.|+.|-.... ..+.
T Consensus 219 wd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------------~~~~ 273 (312)
T 4ery_A 219 WDYSKGKCLK-----------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--------------EIVQ 273 (312)
T ss_dssp EETTTTEEEE-----------EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC--------------CEEE
T ss_pred EECCCCcEEE-----------EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc--------------hhhh
Confidence 9654321111 111110000 01 1111 12333444457889999965331 1222
Q ss_pred ccccCCccEEEEEecCCeEEEEe----cCCcEEEEe
Q 016480 317 TFRRKGIHVVRVSAGDEHVVALD----SSGYVYTWG 348 (389)
Q Consensus 317 ~~~~~~~~v~~i~~G~~hs~alt----~~G~v~~wG 348 (389)
.+......|..+++-....++.+ .||.|..|=
T Consensus 274 ~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred hhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 22222335777777655443332 478888884
No 83
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.02 E-value=2.6e+02 Score=25.59 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEc-----cCceEEEEeeCCcEEEe
Q 016480 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTC 240 (389)
Q Consensus 166 ~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~hs~~lt~~G~v~~w 240 (389)
..++.+.++.+++|+.|++|.+-...--..|..... ......+..-.+.+|+.+.. ...+.+++|++|.+.-.
T Consensus 51 ~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G--~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt 128 (370)
T 3l6v_A 51 LWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG--RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKT 128 (370)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC--cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEe
Q ss_pred eCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecc
Q 016480 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (389)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~ 318 (389)
-...+- .....-...-.+.....++.+..-. .+.+++|++|++.-+-...--.+|..... ++.-.+
T Consensus 129 ~l~e~~-------~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~G-----V~~i~L 196 (370)
T 3l6v_A 129 PLSEFA-------FRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATG-----VRGIRL 196 (370)
T ss_dssp EGGGGC-------SCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCC
T ss_pred EHHHhh-------cccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCC-----eeeEEe
Q ss_pred ccCCccEEEEEecC-------------------------------------CeEEEEecCC
Q 016480 319 RRKGIHVVRVSAGD-------------------------------------EHVVALDSSG 342 (389)
Q Consensus 319 ~~~~~~v~~i~~G~-------------------------------------~hs~alt~~G 342 (389)
. .+..|+.+..-. .+.+.+|++|
T Consensus 197 ~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G 256 (370)
T 3l6v_A 197 A-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENG 256 (370)
T ss_dssp C-TTCCEEEEEEECCC-----------------------------------CEEEEEETTS
T ss_pred C-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCC
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=35.89 E-value=2.3e+02 Score=24.98 Aligned_cols=164 Identities=9% Similarity=0.015 Sum_probs=77.0
Q ss_pred CCEEEEEcC------CCe-eEEEEcCCcEEEEeCCCCCcccCCCCCCceecCE-Eec------ccCCcceEEEEccCc-e
Q 016480 163 AHVVQVSAS------ENH-AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR-LVE------ALKGVPCKQVTAGLN-F 227 (389)
Q Consensus 163 ~~i~~i~~G------~~h-~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~-~v~------~~~~~~i~~i~~G~~-h 227 (389)
..|..++.. ..+ .+.-..+|.|+.|-....-.-+... .....|. .+. ......|..++.... .
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 199 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--TLNWSPTLELQGTVESPMTPSQFATSVDISERGL 199 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT--TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc--eeeccCcceeeeeeccccCCCCCceEEEECCCce
Confidence 356666654 334 4455678999999754310000000 0111121 111 112334555555433 3
Q ss_pred EEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecC---C-CCCCCEEEEEec--CceEEEEECC---CcEEEEeCCCC
Q 016480 228 TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP---L-EEVGSVVQIAAG--PSYMLAVTGN---GVVYSFGSGSN 298 (389)
Q Consensus 228 s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~---~-~~~~~i~~I~~G--~~h~~~lt~~---G~vy~wG~n~~ 298 (389)
.++-..+|.|+.|-..... ....+.. . .....|..++.. ..+.++-..+ |.|+.|-....
T Consensus 200 l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 3344567889998543211 1111221 1 002457776654 3344455566 88888865431
Q ss_pred CccCCCCCCCccccEEeecc----------ccCCccEEEEEec--CCeEEEEecCCcEEEEeCC
Q 016480 299 FCLGHGEQHDELQPRAIQTF----------RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKG 350 (389)
Q Consensus 299 gqLG~g~~~~~~~P~~i~~~----------~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n 350 (389)
.. ...+... ......|..++.. ....++-..+|.|+.|=..
T Consensus 269 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 269 ER-----------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CE-----------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cc-----------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 11 1111110 0012356676654 3344555678999999653
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=31.74 E-value=2.7e+02 Score=24.61 Aligned_cols=200 Identities=9% Similarity=-0.010 Sum_probs=93.7
Q ss_pred CcEEEEecC--CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCCC---eeEEEEcCCcE
Q 016480 112 GNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN---HAAFVLQSGQV 184 (389)
Q Consensus 112 ~i~~i~~G~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~~---h~~~lt~~G~v 184 (389)
.|..++... ...++. .||.|+.|-........... . ..... ........|..++.... ..+.-..+|.|
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--T-PLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC--C-CBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc--c-ccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 466666542 233443 78999998765322000000 0 00000 00011124555555433 33333578889
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccC-----CcceEEEEccCc---eEEEEeeCC---cEEEeeCCCCccccCCCC
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALK-----GVPCKQVTAGLN---FTGFLTIRG---HVHTCGSNTHGQLGHGDT 253 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~-----~~~i~~i~~G~~---hs~~lt~~G---~v~~wG~n~~gqlG~~~~ 253 (389)
+.|-...... ...+.... ...|..++.... ..+.-..+| .|+.|-.....
T Consensus 191 ~iwd~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~------- 251 (416)
T 2pm9_A 191 SIWDLKAKKE------------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN------- 251 (416)
T ss_dssp EEEETTTTEE------------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------
T ss_pred EEEECCCCCc------------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------
Confidence 9997543110 01111111 334666665433 333345555 78888543211
Q ss_pred CCCCCCeeecCCCCCCCEEEEEe---cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEe
Q 016480 254 LDRPTPKSIAPLEEVGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 330 (389)
Q Consensus 254 ~~~~~p~~v~~~~~~~~i~~I~~---G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~ 330 (389)
.+...........|..++. .....+.-..+|.|+.|-.... ..+..+......|..++.
T Consensus 252 ----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--------------~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 252 ----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--------------EQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp ----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--------------CEEEEEECSSSCCCCEEE
T ss_pred ----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--------------ccceeecCCCCceEEEEE
Confidence 1111111011146777776 4456666778899999954321 111112112224555555
Q ss_pred cC---CeEEEEecCCcEEEEeCCCC
Q 016480 331 GD---EHVVALDSSGYVYTWGKGYC 352 (389)
Q Consensus 331 G~---~hs~alt~~G~v~~wG~n~~ 352 (389)
.. ...+.-..+|.|..|--...
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCC
Confidence 44 33444467889999976543
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=30.40 E-value=3.1e+02 Score=24.88 Aligned_cols=148 Identities=6% Similarity=0.013 Sum_probs=83.5
Q ss_pred CEEEEEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEeeCCcEEEee
Q 016480 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTCG 241 (389)
Q Consensus 164 ~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG 241 (389)
.|..++......+.-..+|.|+.|-...... ...+.. ....|..++... ...+.-+.+|.|+.|-
T Consensus 272 ~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------------LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE------------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------------EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 6777766666777778899999997543110 011111 123455555543 3445557789999995
Q ss_pred CCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC
Q 016480 242 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (389)
Q Consensus 242 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~ 321 (389)
.... + ....+.... ..|..++....+.+.-..||.|..|-..... ...... ...
T Consensus 339 ~~~~-~----------~~~~~~~h~--~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----------~~~~~~--~~~ 392 (464)
T 3v7d_B 339 LENG-E----------LMYTLQGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----------RKFSYH--HTN 392 (464)
T ss_dssp TTTT-E----------EEEEECCCS--SCEEEEEECSSEEEEEETTSEEEEEETTTCC-----------EEEEEE--CTT
T ss_pred CCCC-c----------EEEEEeCCC--CcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----------eeeeec--CCC
Confidence 4321 1 111122221 4688888877888888899999999765421 111111 112
Q ss_pred CccEEEEEecCCeEEEEecCCcEEEEeCCC
Q 016480 322 GIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 322 ~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 351 (389)
...+..+..... .++...+|.|+.|=...
T Consensus 393 ~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 393 LSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp CCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred CccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 224555555444 44445589999996543
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=30.29 E-value=3.1e+02 Score=24.85 Aligned_cols=212 Identities=6% Similarity=-0.029 Sum_probs=101.4
Q ss_pred ecCCCcEEEEecCC--eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC---CCeeEEEEc
Q 016480 108 ETSAGNMQITTGRY--HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQ 180 (389)
Q Consensus 108 ~~~~~i~~i~~G~~--h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~ 180 (389)
.....|..++.-.. ..++. .+|.|+.|-.............. .....+. .....|..++.. ..+.+.-..
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~--~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLR-GHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCC--CCSEEEE-CCSSCCCCEEECTTSTTEEEEECT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccC--CCcEEec-CCCCCeEEEEeCCCCCCeEEEEeC
Confidence 33445666766543 34444 78999999875421110000000 0001111 111134444432 224455567
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc---CceEEEEeeCCcEEEeeCCCCccccCCCCCCCC
Q 016480 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP 257 (389)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~ 257 (389)
+|.|+.|-.+...... ....+..........|..|+.. ....+....+|.|+.|-...... ..
T Consensus 203 dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------~~ 268 (430)
T 2xyi_A 203 DHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------SK 268 (430)
T ss_dssp TSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------SS
T ss_pred CCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------Cc
Confidence 8999999876522111 1111111111123346677663 33344456789999996543210 01
Q ss_pred CCeeecCCCCCCCEEEEEecCc---eEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCC-
Q 016480 258 TPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE- 333 (389)
Q Consensus 258 ~p~~v~~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~- 333 (389)
....+.... ..|..|+.... ..+.-..+|.|..|-....++ |.. .+......|..|+.-..
T Consensus 269 ~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~--~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 269 PSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLH--SFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp CSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSE--EEECCSSCEEEEEECSSC
T ss_pred ceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeE--EeecCCCCEEEEEECCCC
Confidence 111122211 35666666432 234456788999997654221 111 11112235777776543
Q ss_pred --eEEEEecCCcEEEEeCCC
Q 016480 334 --HVVALDSSGYVYTWGKGY 351 (389)
Q Consensus 334 --hs~alt~~G~v~~wG~n~ 351 (389)
..+.-..+|.|..|=...
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEeCCC
Confidence 244456789999997554
No 88
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=28.08 E-value=1.3e+02 Score=26.21 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=12.7
Q ss_pred CeeEEEECCeEEEEecC
Q 016480 121 YHTLLISNSSVFSCGSS 137 (389)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (389)
.|++++.+++||++|-.
T Consensus 102 ~~~~~~~~~~iyv~GG~ 118 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGK 118 (318)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ccceEEECCEEEEEcCc
Confidence 56655578999999953
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=26.92 E-value=3.4e+02 Score=24.14 Aligned_cols=154 Identities=10% Similarity=-0.004 Sum_probs=77.5
Q ss_pred EEecCCeeEEE----ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC---CCeeEEEEcCCcEEEEe
Q 016480 116 ITTGRYHTLLI----SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFTCG 188 (389)
Q Consensus 116 i~~G~~h~~~l----~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~~G~vy~wG 188 (389)
+++......++ .+|.|+.|-....+.+... .+........|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~---------~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN---------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT---------CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC---------CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44444444433 5789999986654432110 00000112267777764 33444456789999997
Q ss_pred CCCCCcccCCCCCCceecC-EEecccCCcceEEEEccCc---eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecC
Q 016480 189 DNSSFCCGHRDTNRPIFRP-RLVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (389)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p-~~v~~~~~~~i~~i~~G~~---hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (389)
....+... ....| ..+.. ....|..++.... ..+.-..+|.|+.|-...... ...+..
T Consensus 111 ~~~~~~~~------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~ 172 (402)
T 2aq5_A 111 IPDGGLVL------PLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----------VLTLGP 172 (402)
T ss_dssp CCTTCCSS------CBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------EEEECT
T ss_pred ccCCCCcc------ccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------cEEEec
Confidence 66532111 01111 11211 2345666666544 334446789999995432111 111210
Q ss_pred CCCCCCEEEEEec--CceEEEEECCCcEEEEeCC
Q 016480 265 LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 265 ~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 296 (389)
......|..++.. ....+.-..+|.|+.|-..
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 1111457777664 3345555678899999653
No 90
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.96 E-value=4e+02 Score=24.40 Aligned_cols=130 Identities=9% Similarity=0.062 Sum_probs=59.1
Q ss_pred CEEEEEcCCCeeEEEEcCCc-EEEEeCCC-CCcccCCCCCCceecCEEecccCCcceEEEEcc---------CceEEEEe
Q 016480 164 HVVQVSASENHAAFVLQSGQ-VFTCGDNS-SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---------LNFTGFLT 232 (389)
Q Consensus 164 ~i~~i~~G~~h~~~lt~~G~-vy~wG~n~-~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---------~~hs~~lt 232 (389)
.+..|..|...-++++.||+ +|...... .+.-|. ....-..+..-....+..|..+ .-+.++++
T Consensus 71 v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~-----~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 71 VIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE-----RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp EEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEE-----EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred EEEEEECCCCCcEEECCCCCEEEEEcccccccccCC-----CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 45566666554489998887 77653100 000000 0001111222223334555544 35678888
Q ss_pred eCCc-EEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEEEecCceEEEEECCCcEEEEeCCCCCcc
Q 016480 233 IRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCL 301 (389)
Q Consensus 233 ~~G~-v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqL 301 (389)
.||+ +|.......+.+..-+......-..|+.. ....-...|..-.++++.||++........|.+
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---CcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 8886 67653321222211111111111111110 011112335555668889999888776554443
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=24.33 E-value=3.4e+02 Score=23.26 Aligned_cols=216 Identities=7% Similarity=-0.032 Sum_probs=98.7
Q ss_pred CCcEEEEecC--CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeec--CCCCCCEEEEEcC--CCeeEEEEcCC
Q 016480 111 AGNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN--FPSAAHVVQVSAS--ENHAAFVLQSG 182 (389)
Q Consensus 111 ~~i~~i~~G~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~--~~~~~~i~~i~~G--~~h~~~lt~~G 182 (389)
..|..++... ...++. .||.|+.|-..... ....+. ......|..++.. ....+.-..+|
T Consensus 116 ~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------------EEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence 3477776543 233443 78999999754211 111111 1122367777764 33455556789
Q ss_pred cEEEEeCCCCCcccC-------CCCC-------CceecCE-EecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCcc
Q 016480 183 QVFTCGDNSSFCCGH-------RDTN-------RPIFRPR-LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ 247 (389)
Q Consensus 183 ~vy~wG~n~~gqlG~-------~~~~-------~~~~~p~-~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gq 247 (389)
.|+.|-....-.+.. .... .....|. .........|..++......+.-+.+|.|..|-.....+
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTC
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccc
Confidence 999997654211100 0000 0000000 000112334555555555666667799999996543222
Q ss_pred ccCCCCCCCCCCeeecCCCC-CCCEEE--EEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccC-
Q 016480 248 LGHGDTLDRPTPKSIAPLEE-VGSVVQ--IAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK- 321 (389)
Q Consensus 248 lG~~~~~~~~~p~~v~~~~~-~~~i~~--I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~- 321 (389)
.-............+..+.. ...|.. ++.. ....++-..+|.|+.|-..... .....+..+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~ 333 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED----------PHKAKCTTLTHHK 333 (366)
T ss_dssp CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS----------GGGCEEEEECCTT
T ss_pred cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC----------CccccceEEcccc
Confidence 10000000011111111100 011222 2222 4455556778899998754321 111111112111
Q ss_pred -CccEEEEEecC--CeEEEEecCCcEEEEe
Q 016480 322 -GIHVVRVSAGD--EHVVALDSSGYVYTWG 348 (389)
Q Consensus 322 -~~~v~~i~~G~--~hs~alt~~G~v~~wG 348 (389)
...|..++... .+.+.-..+|.|+.|=
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 23677776653 3445557788999884
No 92
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=24.33 E-value=3.5e+02 Score=23.43 Aligned_cols=22 Identities=0% Similarity=-0.040 Sum_probs=15.3
Q ss_pred cCCCeeEEEEcCCcEEEEeCCC
Q 016480 170 ASENHAAFVLQSGQVFTCGDNS 191 (389)
Q Consensus 170 ~G~~h~~~lt~~G~vy~wG~n~ 191 (389)
.|.-..++++.+|++|..+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCC
Confidence 3555667778888888877544
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=23.90 E-value=4e+02 Score=23.93 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=72.1
Q ss_pred cCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCC-CCCEEEEEcCC--CeeEEEEcCCcEEEEeCCCCCc
Q 016480 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFC 194 (389)
Q Consensus 119 G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~-~~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gq 194 (389)
+....+++ -|+.||.|-... |+ ....+.+.. ...|..|+... .+.+.-+.||.|..|-....-.
T Consensus 114 S~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 34567888 999999996542 21 111222222 22577777553 3444446789999997543111
Q ss_pred ccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCCCCCEEEE
Q 016480 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI 274 (389)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~I 274 (389)
...+.. ....+..++......+.-..++.++.|-..... .....+.... ..+..+
T Consensus 182 ------------~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~----------~~~~~~~~h~--~~~~~~ 236 (420)
T 4gga_A 182 ------------LRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----------HHVATLSGHS--QEVCGL 236 (420)
T ss_dssp ------------EEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEEEEEECCS--SCEEEE
T ss_pred ------------EEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccc----------eeeEEecccc--cceeee
Confidence 011111 123455666555544455667777777432211 0011111111 234433
Q ss_pred Eec--CceEEEEECCCcEEEEeCC
Q 016480 275 AAG--PSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 275 ~~G--~~h~~~lt~~G~vy~wG~n 296 (389)
... ....+....||.+..|-..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESS
T ss_pred eecCCCCeeeeeeccccceEEeec
Confidence 332 3455556778888888654
No 94
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.41 E-value=3.8e+02 Score=23.57 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=113.3
Q ss_pred EEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC-----CCeeEEEEcCCcEEEEeC
Q 016480 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGD 189 (389)
Q Consensus 116 i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~ 189 (389)
++.+..+.+++ +.|++|.+-..+--..|...... .-...+.+....+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 34455666677 99999998765322212111110 01123445555677777654 356788999999998876
Q ss_pred CCCCcccCCCCCCceecCEEeccc-CCcceEEEEc--cCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCC
Q 016480 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (389)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~--G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (389)
..+-.. . ..-.....+ ++..++.+.. +..+.+++|++|.+.-+-.++.-..|.... =.+.-.+.
T Consensus 132 ~~~~~~-r-------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~-----Gv~~i~L~ 198 (312)
T 1suu_A 132 TDFKAV-K-------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ-----GVCGMKLK 198 (312)
T ss_dssp GGGCC------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC-----CEECCCCC
T ss_pred HHhhcc-C-------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC-----CeEeEEeC
Confidence 543110 0 001111111 2344554443 556788899999999887655433332211 11111222
Q ss_pred CCCCEEEEEe--cCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccc-cCCccEEEE--EecCCeEEEEecC
Q 016480 267 EVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRV--SAGDEHVVALDSS 341 (389)
Q Consensus 267 ~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~-~~~~~v~~i--~~G~~hs~alt~~ 341 (389)
..+.|+.+.. ...+.+++|++|.+.-.-..++-..+.+..-. ++..+. .+...++.+ .......++++++
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv-----~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~ 273 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY-----TSYKKSDKKAGSVVDAIAVSEDDEILLVSKR 273 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-----ECSCTTCTTTCSEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-----EeeEccCCCCCeEEEEEEeCCCCEEEEEeCC
Confidence 2256776654 34567889999987777666654444432211 111111 122234432 2355667778888
Q ss_pred CcEEEEeCCCC
Q 016480 342 GYVYTWGKGYC 352 (389)
Q Consensus 342 G~v~~wG~n~~ 352 (389)
|.+.-.-.++.
T Consensus 274 g~~~r~~~~~i 284 (312)
T 1suu_A 274 SKALRTVAGKV 284 (312)
T ss_dssp CEEEEEEGGGS
T ss_pred CeEEEEEcccC
Confidence 87766554443
No 95
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=23.03 E-value=3.9e+02 Score=23.51 Aligned_cols=202 Identities=9% Similarity=0.009 Sum_probs=90.6
Q ss_pred CCcEEEEecCC-eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC---CCeeEEEEcCCcE
Q 016480 111 AGNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQV 184 (389)
Q Consensus 111 ~~i~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G---~~h~~~lt~~G~v 184 (389)
..|..++-... ..++. .+|.|..|-...... + . .+..........|..++.. ....+.-..+|.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~----~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-A----I----NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-C----C----CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc-c----c----cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 34666665332 23333 789999996543110 0 0 0111111112245555543 3344445678899
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCc---eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCee
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~ 261 (389)
+.|-........... ....+.... .....|..++.... ..+.-..+|.|..|-...... ...
T Consensus 139 ~iwd~~~~~~~~~~~---~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~ 203 (416)
T 2pm9_A 139 FIWDMNKCTESPSNY---TPLTPGQSM-SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-----------VIH 203 (416)
T ss_dssp EBCBTTTTSSCTTTC---CCBCCCCSC-CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------EEE
T ss_pred EEEECCCCccccccc---ccccccccc-CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------ceE
Confidence 999765422000000 000000000 11224555555433 333345788999995432111 111
Q ss_pred ecCCC----CCCCEEEEEecCc---eEEEEECCC---cEEEEeCCCCCccCCCCCCCccccEEeeccc-cCCccEEEEEe
Q 016480 262 IAPLE----EVGSVVQIAAGPS---YMLAVTGNG---VVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRVSA 330 (389)
Q Consensus 262 v~~~~----~~~~i~~I~~G~~---h~~~lt~~G---~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~-~~~~~v~~i~~ 330 (389)
+.... ....|..++.... ..+.-..+| .|+.|-.....+ |. ..+. .....|..++.
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~--~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PL--QTLNQGHQKGILSLDW 270 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CS--BCCCSCCSSCEEEEEE
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------Cc--EEeecCccCceeEEEe
Confidence 11110 0145777666533 344445566 788886543211 11 1111 11224555554
Q ss_pred ---cCCeEEEEecCCcEEEEeC
Q 016480 331 ---GDEHVVALDSSGYVYTWGK 349 (389)
Q Consensus 331 ---G~~hs~alt~~G~v~~wG~ 349 (389)
.....+.-..+|.|+.|=.
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECS
T ss_pred CCCCCCeEEEEeCCCCEEEeeC
Confidence 3344555566777888753
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=23.02 E-value=4.1e+02 Score=23.81 Aligned_cols=49 Identities=6% Similarity=0.163 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEecCCe--EEEEecCCcEEEEe
Q 016480 286 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--VVALDSSGYVYTWG 348 (389)
Q Consensus 286 ~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G~~h--s~alt~~G~v~~wG 348 (389)
.+|.|+.|-.... .++..+......|..++..... .+.-..||.|..|=
T Consensus 342 ~d~~I~iwd~~~~--------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 342 AQNQLVIWKYPTM--------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp TTCCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred CCCEEEEEECCCC--------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 5788888854321 1222232223368888765433 33345788899994
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=22.81 E-value=4.1e+02 Score=23.74 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=75.7
Q ss_pred CcEEEEecC-C-eeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcCC--CeeEEEEcCCcEE
Q 016480 112 GNMQITTGR-Y-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVF 185 (389)
Q Consensus 112 ~i~~i~~G~-~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~G~vy 185 (389)
.|..|+... . ..++. .||.|..|-..... .+.. . .+ ...+.....|..|+... ...+.-..||.|.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~--~----~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEII-VGEV--Y----SS-SLTYDCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH-TTCC--C----SC-SEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccc-cCcc--c----ce-eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 466666544 2 33333 78999999753200 0000 0 00 00111123577776543 3445556789998
Q ss_pred EEeCC--CCCcccCCCCCCceecCEEeccc------CCcceEEEEcc----CceEEEEeeCCcEEEeeCCCCccccCCCC
Q 016480 186 TCGDN--SSFCCGHRDTNRPIFRPRLVEAL------KGVPCKQVTAG----LNFTGFLTIRGHVHTCGSNTHGQLGHGDT 253 (389)
Q Consensus 186 ~wG~n--~~gqlG~~~~~~~~~~p~~v~~~------~~~~i~~i~~G----~~hs~~lt~~G~v~~wG~n~~gqlG~~~~ 253 (389)
.|-.. ..+++- .......+..+ ....+..+..- ....+.-+.+|.|+.|-....
T Consensus 137 vwd~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------- 202 (437)
T 3gre_A 137 VLKVNHYQQESEV------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-------- 202 (437)
T ss_dssp EEEEEEEEETTEE------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--------
T ss_pred EEEeccccCCcee------eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------
Confidence 88643 112110 00111111111 23344554422 334445577889999954321
Q ss_pred CCCCCCeeecCCCCCCCEEEEEecC--ceEEEEECCCcEEEEeCC
Q 016480 254 LDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 254 ~~~~~p~~v~~~~~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 296 (389)
.....+........|..++... ...+.-+.+|.|..|-..
T Consensus 203 ---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 203 ---ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp ---CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ---eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 1111222210114677777643 344556778889999654
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=22.77 E-value=3.5e+02 Score=22.95 Aligned_cols=208 Identities=6% Similarity=-0.126 Sum_probs=99.7
Q ss_pred CCcEEEEec--CC-eeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecC-CCCCCEEEEEcC-CCeeEEEEcCCcE
Q 016480 111 AGNMQITTG--RY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSAS-ENHAAFVLQSGQV 184 (389)
Q Consensus 111 ~~i~~i~~G--~~-h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~-~~~~~i~~i~~G-~~h~~~lt~~G~v 184 (389)
..|..++.. .. ..+.- .+|.|+.|-....+++ ..+.. .....|..++.. ....+.-..+|.|
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i 124 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLI 124 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeE
Confidence 345555543 22 33333 7889999965122221 11111 022356665543 4555666788999
Q ss_pred EEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecC
Q 016480 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (389)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (389)
+.|-...... ... .....+..... ....|..++......++.+.+|.|+.|-....+. ........
T Consensus 125 ~iwd~~~~~~---~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~ 190 (342)
T 1yfq_A 125 EVIDPRNYGD---GVI-AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEES 190 (342)
T ss_dssp EEECHHHHTT---BCE-EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEEC
T ss_pred EEEccccccc---ccc-cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeec
Confidence 9996432100 000 00000000000 2335677777777766668889999996543110 01111111
Q ss_pred CCCCCCEEEEEecC---ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeecccc------CCccEEEEEec--CC
Q 016480 265 LEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR------KGIHVVRVSAG--DE 333 (389)
Q Consensus 265 ~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~------~~~~v~~i~~G--~~ 333 (389)
... ..|..|+... ...++-..+|.+..|-....+. .........+..... ....|..++.. ..
T Consensus 191 ~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 191 GLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp SCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred CCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence 111 3577776643 4556667788898887654310 000001111111100 01146666553 33
Q ss_pred eEEEEecCCcEEEEeCC
Q 016480 334 HVVALDSSGYVYTWGKG 350 (389)
Q Consensus 334 hs~alt~~G~v~~wG~n 350 (389)
..++-..+|.|+.|=..
T Consensus 265 ~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CEEEEETTSCEEEEETT
T ss_pred EEEEecCCceEEEEcCc
Confidence 44555778999999654
No 99
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=22.75 E-value=4e+02 Score=23.55 Aligned_cols=184 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred EEEEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEc---CCCeeEEEEcCCcEEEEeC
Q 016480 114 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA---SENHAAFVLQSGQVFTCGD 189 (389)
Q Consensus 114 ~~i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~---G~~h~~~lt~~G~vy~wG~ 189 (389)
+.++....+.+.- .+|.++.|-.. ............+..+.+ .....+.-..+|.|..|-.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 126 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTI---------------IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDS 126 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECC---------------SEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECT
T ss_pred eeeeecCCeEEEEEcCCcEEEEEec---------------ccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeC
Q ss_pred CCCCcccCCCCCCceecCEEecccCCcceEEEEccCc--eEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCCC
Q 016480 190 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE 267 (389)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 267 (389)
.. ..+..........|..++.... ..+.-..+|.|+.| +.........+.....
T Consensus 127 ~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw-----------d~~~~~~~~~~~~h~~ 182 (420)
T 3vl1_A 127 NF-------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW-----------SVKDGSNPRTLIGHRA 182 (420)
T ss_dssp TS-------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEE-----------ETTTCCCCEEEECCSS
T ss_pred CC-------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEE-----------eCCCCcCceEEcCCCC
Q ss_pred CCCEEEEEecCceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEe-----------------
Q 016480 268 VGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA----------------- 330 (389)
Q Consensus 268 ~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~----------------- 330 (389)
...-..+..-....+.-..+|.|..| +.........+.........+..++.
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iw-----------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLW-----------ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEE-----------ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEe-----------ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Q ss_pred ------cCCeEEEEecCCcEEEE
Q 016480 331 ------GDEHVVALDSSGYVYTW 347 (389)
Q Consensus 331 ------G~~hs~alt~~G~v~~w 347 (389)
-..+.++-..+|.|..|
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEE
No 100
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.27 E-value=4e+02 Score=23.37 Aligned_cols=217 Identities=13% Similarity=0.060 Sum_probs=111.3
Q ss_pred EEecCCeeEEE-ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEc-----CCCeeEEEEcCCcEEEEeC
Q 016480 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA-----SENHAAFVLQSGQVFTCGD 189 (389)
Q Consensus 116 i~~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~-----G~~h~~~lt~~G~vy~wG~ 189 (389)
++.+..+.+++ +.|++|.+-..+--..+...... .....+.+....+|+.+.. ...+.+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR--PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE--EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe--EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 34455566666 99999998776432222211111 0112234455567777754 2335777899998887754
Q ss_pred CCCCcccCCCCCCceecCEEeccc-CCcceEEE--EccCceEEEEeeCCcEEEeeCCCCccccCCCCCCCCCCeeecCCC
Q 016480 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQV--TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (389)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i--~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (389)
.++-.... .......+ ++..++.+ ..+..+.+++|++|+++-+-..+.-.+|.... -.+.-.+.
T Consensus 127 ~e~~~~~r--------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-----Gv~~i~L~ 193 (307)
T 1zi0_A 127 TEFNRLRT--------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-----GVRGIRLG 193 (307)
T ss_dssp GGGTTCCT--------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCC
T ss_pred HHhhcccc--------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-----CeEeEEeC
Confidence 43211100 11111111 22334432 33667788899999999886655443333211 11222233
Q ss_pred CCCCEEEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEe--cCCeEEEEecCC
Q 016480 267 EVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSG 342 (389)
Q Consensus 267 ~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~--G~~hs~alt~~G 342 (389)
..+.|+.+..- ....+++|++|.+--.-..++-.-+.+. .-..+..+......++.+.. .....+++|++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 33678777543 2356777888865444333321111111 11112222222235555444 556678899999
Q ss_pred cEEEEeCCCC
Q 016480 343 YVYTWGKGYC 352 (389)
Q Consensus 343 ~v~~wG~n~~ 352 (389)
.+.-.-.++-
T Consensus 269 ~~ir~~~~~i 278 (307)
T 1zi0_A 269 TLVRTRVSEI 278 (307)
T ss_dssp CEEEEEGGGS
T ss_pred cEEEEecccc
Confidence 9887765443
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=21.93 E-value=4e+02 Score=23.26 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=55.6
Q ss_pred CEEEEEcCCC-eeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEeccc--C---CcceEEEEcc--CceEEEEeeC-
Q 016480 164 HVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--K---GVPCKQVTAG--LNFTGFLTIR- 234 (389)
Q Consensus 164 ~i~~i~~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~---~~~i~~i~~G--~~hs~~lt~~- 234 (389)
.|..++...+ ..+.-..+|.|+.|-....- ....+... . ...|..++.. ..+.++-..+
T Consensus 188 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 188 FATSVDISERGLIATGFNNGTVQISELSTLR------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp CCCEEEECTTSEEEEECTTSEEEEEETTTTE------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred CceEEEECCCceEEEEeCCCcEEEEECCCCc------------eeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 4555554433 44444567889988754310 00111110 1 3346666553 3344444567
Q ss_pred --CcEEEeeCCCCccccCCCCCCCCCCeeecC-----------CCCCCCEEEEEec--CceEEEEECCCcEEEEeCC
Q 016480 235 --GHVHTCGSNTHGQLGHGDTLDRPTPKSIAP-----------LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (389)
Q Consensus 235 --G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~-----------~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 296 (389)
|.|+.|-......+ ..+.. ......|..++.. ....+.-..+|.|+.|-..
T Consensus 256 ~~g~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 256 SFGCITLYETEFGERI-----------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp TEEEEEEEETTTCCEE-----------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCceEEEEECCCCccc-----------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 88999865422111 11111 0012467777765 3455556678999999654
No 102
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.78 E-value=6.5e+02 Score=25.29 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEcCCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEEEEcc--CceEEEEeeCCcEEEeeCCCC
Q 016480 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTH 245 (389)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~G~v~~wG~n~~ 245 (389)
.+...++.+++|+.|++|.--...--.. ...-......+..-++.+|+.+.+. ..+.++.|++|.+.-.-...+
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~lP~~----~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~ 585 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPITLPSA----RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 585 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTTSCCC----C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EecCCCEEEEEecCCcEEEEEeeecccc----cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHh
Q ss_pred ccccCCCCCCCCCCeeecCCCCCCCEEEEEec---CceEEEEECCCcEEEEeCCCCCccCC
Q 016480 246 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGH 303 (389)
Q Consensus 246 gqlG~~~~~~~~~p~~v~~~~~~~~i~~I~~G---~~h~~~lt~~G~vy~wG~n~~gqLG~ 303 (389)
- .....-...-.+.+.+.++.+..- ..+.+++|++|++.-+-.++--.+|.
T Consensus 586 ~-------~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 586 V-------ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp C-------CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred c-------ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
No 103
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.74 E-value=3.9e+02 Score=22.74 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=78.9
Q ss_pred eEEEEcCCcEEEEeCCCCCcccCCCCCCceecCEEecccCCcceEE--EEccCceEEEEeeCCcEEEeeCCCCccccCCC
Q 016480 175 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGD 252 (389)
Q Consensus 175 ~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~hs~~lt~~G~v~~wG~n~~gqlG~~~ 252 (389)
.+++|++|.|-......++-.+ +..-++..+.. .+....+.+++|+.|++|..-..+.-. +.
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~-------------~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~---~r 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPG-------------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS---AR 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTT-------------SCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCC---SS
T ss_pred EEEEeCCCEEEEeeCCcCCcee-------------ccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCC---cC
Confidence 4567888887665533322101 01112233333 334556788899999999986543211 10
Q ss_pred CCCCCCCeeecCCCCCCCEEEEEec--CceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEE-
Q 016480 253 TLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS- 329 (389)
Q Consensus 253 ~~~~~~p~~v~~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~- 329 (389)
..-.+....++ +...++|+.+... ..+.+++|++|.+.-.-..++-... ..-..+-.+.. +..++.+.
T Consensus 69 ~~G~~i~~~i~-L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~~-~d~lv~~~~ 139 (256)
T 1zvt_A 69 GQGEPLTGKLT-LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLPE-NAHVMPPVV 139 (256)
T ss_dssp SCCEEGGGTCC-CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCCT-TCCBCCCEE
T ss_pred CCCeEeeeeec-CCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEECC-CCEEEEEEE
Confidence 00011111222 3333688888763 3457888999987766544431100 01112222221 12333322
Q ss_pred --ecCCeEEEEecCCcEEEEeCCCC
Q 016480 330 --AGDEHVVALDSSGYVYTWGKGYC 352 (389)
Q Consensus 330 --~G~~hs~alt~~G~v~~wG~n~~ 352 (389)
-+..+.+++|++|++.-+-.++.
T Consensus 140 ~~~~~~~i~l~T~~G~~lrf~~~ei 164 (256)
T 1zvt_A 140 IEDASDMLLAITQAGRMLMFPVSDL 164 (256)
T ss_dssp CCCTTCEEEEEETTSEEEEEEGGGS
T ss_pred ecCCCCEEEEEcCCCeEEEEEHHHC
Confidence 25678888999999888765443
No 104
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=20.41 E-value=4.1e+02 Score=22.81 Aligned_cols=205 Identities=8% Similarity=-0.034 Sum_probs=94.7
Q ss_pred CcEEEEecC-CeeEEE--ECCeEEEEecCCCCccCCCCCCceeeeeeeecCCCCCCEEEEEcC--CCeeEEEEcCCcEEE
Q 016480 112 GNMQITTGR-YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (389)
Q Consensus 112 ~i~~i~~G~-~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~ 186 (389)
.|..++-.. ...++. .+|.|+.|-.... + ..+..........|..++.. ....++-..+|.|+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-T----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETT-E----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCC-e----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 455555432 223333 7888888864211 0 01111111222356666654 334445567888888
Q ss_pred EeCCCCCcccCCCCCCceecCEEecccCCcceEEEEccC--ceEEEEeeCCcEEEeeCCCCccccCCCC----CCCCCCe
Q 016480 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDT----LDRPTPK 260 (389)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~G~v~~wG~n~~gqlG~~~~----~~~~~p~ 260 (389)
|-..... .......+.......|..++... ...+.-..+|.|+.|-......-..... .......
T Consensus 123 ~d~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 123 CYFEQEN---------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp EEEETTT---------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred EEecCCC---------cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 8654311 01111112111133466666543 3344446789999996432110000000 0001111
Q ss_pred eecCCC-CCCCEEEEEecC--ceEEEEECCCcEEEEeCCCCCccCCCCCCCccccEEeeccccCCccEEEEEec-CCeEE
Q 016480 261 SIAPLE-EVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEHVV 336 (389)
Q Consensus 261 ~v~~~~-~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~~~~v~~i~~G-~~hs~ 336 (389)
.+..+. ....|..++... .+.++-..+|.|+.|-.... . .+..+......|..++.. +...+
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~--~~~~~~~~~~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------------M--AVATLASETLPLLAVTFITESSLV 259 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------------T--EEEEEECSSCCEEEEEEEETTEEE
T ss_pred heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC------------c--eeEEEccCCCCeEEEEEecCCCEE
Confidence 222221 113577776643 35555677888888865321 1 111111122246555543 33455
Q ss_pred EEecCCcEEEEeCC
Q 016480 337 ALDSSGYVYTWGKG 350 (389)
Q Consensus 337 alt~~G~v~~wG~n 350 (389)
+...+|.|+.|-..
T Consensus 260 ~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 260 AAGHDCFPVLFTYD 273 (372)
T ss_dssp EEETTSSCEEEEEE
T ss_pred EEEeCCeEEEEEcc
Confidence 56688888888653
Done!