BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016484
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 168/291 (57%), Gaps = 11/291 (3%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
DY L S+LF+E QRSGRLP +Q++TWR +S L+D DL GGY+DAGD VKFG
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 100 PMAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PMA+T T+L+W +I+F G S L++ + A++W TDY +KA T + Y QVG +
Sbjct: 64 PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDA 122
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W RPEDM R YK+ T PGSD+ S+VF++ D +YS LL A
Sbjct: 123 DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHAR 182
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
++FDFA+ YRG YSDS+ FY S + Y DEL+W A+WL+RA+ +++YL +S
Sbjct: 183 QLFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYD 240
Query: 278 ILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLI 328
G K +G +VLL+K Q YK +Y+ LI
Sbjct: 241 EFGLQNWGGGLNWDSKVSGVQVLLAK------LTNKQAYKDTVQSYVNYLI 285
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 150/233 (64%), Gaps = 5/233 (2%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y++AL KS+ F+E QRSG+LP N +++WRG+SGL+DG+ +DL GG+YDAGD+VKFG
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 100 PMAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PMAFT T+L+W IE G + K +RW DY +KA +P LYVQVGD +
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAH-PSPNVLYVQVGDGDA 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGSDV S+VF D DP+Y+ L++ A
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLA 270
+++ FAD YRG YSD + + FY S+SGY DEL+WGA WL++A+ + SYLA
Sbjct: 184 QLYTFADTYRGVYSDCVPAGA--FYNSWSGYQDELVWGAYWLYKATGDDSYLA 234
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 137/241 (56%), Gaps = 13/241 (5%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQ-QLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFG 98
+Y +AL K+I F+E QRSG+L + +L WRG+SGL DG +DL GG+YDAGD+VKF
Sbjct: 25 NYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFN 84
Query: 99 LPMAFTTTLLSWSVIEFGSSMQ-----NHLENAKAAIRWGTDYLLKASTATPGALYVQVG 153
LPM+++ +L W+V E+ + + NH+ N I+W DY +K Y QVG
Sbjct: 85 LPMSYSAAMLGWAVYEYEDAFKQSGQYNHILN---NIKWACDYFIKCHPEKD-VYYYQVG 140
Query: 154 DPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLL 213
D + DH W E M R YKV +PGS V S++FK D YS + L
Sbjct: 141 DGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECL 200
Query: 214 KTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQ 273
K A ++F+FAD + SD + FY S+SG+ DEL W A WL+ A+ +SSYL +
Sbjct: 201 KHAKELFEFADTTK---SDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAE 257
Query: 274 S 274
S
Sbjct: 258 S 258
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 135/237 (56%), Gaps = 7/237 (2%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL KSI+F+E QRSG LP +++ WR +SG+ DGS VDL GG+YDAGD+VKF L
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 100 PMAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGK 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQS 274
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 184 NLFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAES 236
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 135/237 (56%), Gaps = 7/237 (2%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL KSI+F+E QRSG LP +++ WR +SG+ DGS VDL GG+YDAGD+VKF L
Sbjct: 5 NYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNL 64
Query: 100 PMAFTTTLLSWSVIEFGSSMQN--HLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T+ +L+WS+ E + + I+W DY +K + TPG Y QVGD
Sbjct: 65 PMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCN-PTPGVYYYQVGDGGK 123
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV PGS V +VVFK SDP+Y+ K + A
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQS 274
+FD ADK + SD+ Y S S + D+L W A WL+ A+ +S+YL +S
Sbjct: 184 NLFDMADKAK---SDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAES 236
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 143/248 (57%), Gaps = 10/248 (4%)
Query: 40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
+Y +AL K+I+F+E Q SG+LP + WRG+S L DG +DL GG++DAGD+VKF L
Sbjct: 27 NYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNL 86
Query: 100 PMAFTTTLLSWSVIEFGSSM--QNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
PM++T T+LSW+V E+ + LE+ I W DY +K + Y QVGD +
Sbjct: 87 PMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKY-VYYYQVGDGSK 145
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
DH W E M R +KV+ +PGS V S+V KD +P+ + L+ A
Sbjct: 146 DHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAK 205
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYL----AYIQ 273
++++FA+ + SD+ + +Y S+SG+ DEL W A WL+ A+ +S+YL +Y+Q
Sbjct: 206 ELYEFAEVTK---SDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQ 262
Query: 274 SNGHILGA 281
+ I G+
Sbjct: 263 NWPKISGS 270
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 12/235 (5%)
Query: 39 QDYSDALGKSILFFEGQRSG-RLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKF 97
DYS AL SI+FF+ + G + N WRG +DGS VDL GGY+DAGD+VKF
Sbjct: 4 HDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKF 63
Query: 98 GLPMAFTTTLLSWSVIEFGSSMQNHLENAK--AAIRWGTDYLLKASTATPGALYVQVGDP 155
GLP ++ +L WS+ EF S K +++ TDY LK S Y QVG+
Sbjct: 64 GLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVGEG 122
Query: 156 NMDHHCWERPEDMDTPR-NVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLK 214
N DH W PE+ R ++YK +P SD+ + +K+ D +Y+TK L
Sbjct: 123 NADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLN 182
Query: 215 TAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYL 269
A +++ +G + FY + S + D+L W A+WL+ A+ +S+Y+
Sbjct: 183 AAKELYAMGKANQGVGNGQ------SFYQATS-FGDDLAWAATWLYTATNDSTYI 230
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 35/263 (13%)
Query: 40 DYSDALGKSILFFEGQRSGR-LPPNQQLTWRG--------------NSGLSDG------- 77
+Y+ AL S+ F++ G + N L+WRG N+ +SDG
Sbjct: 39 NYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNRS 98
Query: 78 -----SSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAI 130
VD+ GG++DAGD+VKFGLP A+ + + W EF + +A+ +
Sbjct: 99 VLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVIL 158
Query: 131 RWGTDYLLKAS----TATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDV 186
R+ DY ++ + + A QVGD ++DH W PE+ R + ++ + PG+D+
Sbjct: 159 RYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDI 218
Query: 187 XXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYS 246
+ FKD+DP Y+ K L A +FDFA+K + Y S
Sbjct: 219 ISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKG--YYGSS 276
Query: 247 GYLDELLWGASWLHRASQNSSYL 269
+ D+ W A+WL+ A+QN YL
Sbjct: 277 KWQDDYCWAAAWLYLATQNEHYL 299
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 30/248 (12%)
Query: 41 YSDALGKSILFFEGQRSGR-LPPNQQLTW-RGNSGLSD----GSSYHVDLVGGYYDAGDN 94
Y D L + FF+ Q G LP ++ W G SD G+ + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 95 VKFGLPMAFTTTLLSWSVIEFGSSMQN-----------HLENAKAAIRWGTDYLLKASTA 143
K+ +P A L + F +++ + HL A R +LL
Sbjct: 148 GKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQDP 207
Query: 144 TPGALYVQVGDPN---MDHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVV 200
G +Y +V P+ +D RPED D P + +S ++V
Sbjct: 208 ATGGVYHKVTTPSFPPLD----TRPEDDDAPLVLSPISYA-----ATATFCAAMAHAALV 258
Query: 201 FKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLH 260
++ DP+ S+ A + + + + + + ++ Y + DELLW + L
Sbjct: 259 YRPFDPALSSCCADAARRAYAWLGAHEMQPFHNPDGILTGEYGD-AELRDELLWASCALL 317
Query: 261 RASQNSSY 268
R + +S++
Sbjct: 318 RMTGDSAW 325
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 43/232 (18%)
Query: 79 SYHVDLVGGYYDAGDNVKF----GLPM---------AFTTTLLSWSVIEFGSSMQNHLEN 125
+Y D+ GG+YDAGD+ K+ G+ + A L +W G N
Sbjct: 165 NYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNN 224
Query: 126 AKAAI----RWGTDYLLKASTATPGALYVQVGDPN---MDHHC-----WER----PEDMD 169
I RW ++ K + DP+ M HH W P +
Sbjct: 225 GYPDILDEARWEIEFFKKMQV-------TEKEDPSIAGMVHHKIHDFRWTALGMLPHEDP 277
Query: 170 TPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGS 229
PR + VST + ++KD DP+++ L+ A + A K+
Sbjct: 278 QPRYLRPVSTA-----ATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPDI 332
Query: 230 YSDSLNSVVCPFYCSYSG-YL-DELLWGASWLHRASQNSSYLAYIQSNGHIL 279
Y++ P Y+ Y+ DE W A L+ + Y Y+ ++ H L
Sbjct: 333 YAEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYL 384
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 43/232 (18%)
Query: 79 SYHVDLVGGYYDAGDNVKF----GLPM---------AFTTTLLSWSVIEFGSSMQNHLEN 125
+Y D+ GG+YDAGD+ K+ G+ + A L +W G N
Sbjct: 165 NYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNN 224
Query: 126 AKAAI----RWGTDYLLKASTATPGALYVQVGDPN---MDHHC-----WER----PEDMD 169
I RW ++ K + DP+ M HH W P +
Sbjct: 225 GYPDILDEARWEIEFFKKMQV-------TEKEDPSIAGMVHHKIHDFRWTALGMLPHEDP 277
Query: 170 TPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGS 229
PR + VST + ++KD DP+++ L+ A + A K+
Sbjct: 278 QPRYLRPVSTA-----ATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPDI 332
Query: 230 YSDSLNSVVCPFYCSYSG-YL-DELLWGASWLHRASQNSSYLAYIQSNGHIL 279
Y++ P Y+ Y+ DE W A L+ + Y Y+ ++ H L
Sbjct: 333 YAEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYL 384
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 81 HVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGS------------SMQNHLENAKA 128
H D+VGG GDN + MAF + F S M+ H ENA A
Sbjct: 218 HSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALA 277
Query: 129 AIRW 132
+W
Sbjct: 278 LAQW 281
>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
Length = 109
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 138 LKASTATP----GALYVQVGDPNMDHHCWE 163
LK +T TP G +Y+Q D ++ H CW+
Sbjct: 12 LKGTTVTPDKRKGLVYIQQTDDSLIHFCWK 41
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 204 SDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLD---ELLWGASWLH 260
+DP + + LK A D + Y+ + ++ P Y +++G+L+ EL ++ L
Sbjct: 66 NDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125
Query: 261 RASQNSS 267
R QN +
Sbjct: 126 RGIQNQA 132
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 204 SDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLD---ELLWGASWLH 260
+DP + + LK A D + Y+ + ++ P Y +++G+L+ EL ++ L
Sbjct: 74 NDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 133
Query: 261 RASQNSS 267
R QN +
Sbjct: 134 RGIQNQA 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,912,527
Number of Sequences: 62578
Number of extensions: 435113
Number of successful extensions: 789
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 19
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)