Your job contains 1 sequence.
>016485
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPS
YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLAN
FHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKP
RGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLP
LIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK
EKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPN
SSLRHITLENNENKPVTNSRDTQEVIVG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016485
(388 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2092815 - symbol:ECT2 "evolutionarily conserve... 1005 2.3e-101 1
TAIR|locus:2159391 - symbol:ECT3 "AT5G61020" species:3702... 902 1.9e-90 1
TAIR|locus:2095938 - symbol:ECT1 "evolutionarily conserve... 869 6.0e-87 1
TAIR|locus:2089280 - symbol:ECT5 "AT3G13060" species:3702... 653 2.0e-67 2
TAIR|locus:2088995 - symbol:ECT6 "AT3G17330" species:3702... 597 4.0e-58 1
TAIR|locus:2023807 - symbol:ECT7 "AT1G48110" species:3702... 572 4.8e-58 2
TAIR|locus:2010494 - symbol:ECT9 "AT1G27960" species:3702... 564 7.8e-58 2
TAIR|locus:2207405 - symbol:ECT8 "AT1G79270" species:3702... 560 3.4e-54 1
TAIR|locus:2161213 - symbol:ECT10 "evolutionarily conserv... 544 1.7e-52 1
TAIR|locus:2024286 - symbol:ECT11 "AT1G09810" species:370... 515 2.0e-49 1
UNIPROTKB|Q9Y5A9 - symbol:YTHDF2 "YTH domain family prote... 478 6.0e-48 2
UNIPROTKB|Q7Z739 - symbol:YTHDF3 "YTH domain family prote... 449 1.1e-46 2
MGI|MGI:1917431 - symbol:Ythdf1 "YTH domain family 1" spe... 451 1.4e-46 2
MGI|MGI:1918850 - symbol:Ythdf3 "YTH domain family 3" spe... 449 1.4e-46 2
ZFIN|ZDB-GENE-040426-2786 - symbol:ythdf1 "YTH domain fam... 444 6.0e-46 2
CGD|CAL0002569 - symbol:orf19.1939 species:5476 "Candida ... 338 1.1e-30 1
UNIPROTKB|Q5A1Q7 - symbol:CaO19.1939 "Putative uncharacte... 338 1.1e-30 1
SGD|S000002782 - symbol:YDR374C "Putative protein of unkn... 279 2.0e-24 1
ZFIN|ZDB-GENE-041114-114 - symbol:ythdc1 "YTH domain cont... 178 7.3e-12 2
TAIR|locus:2118046 - symbol:AT4G11970 "AT4G11970" species... 183 2.4e-11 1
RGD|621706 - symbol:Ythdc1 "YTH domain containing 1" spec... 187 8.1e-11 2
FB|FBgn0027616 - symbol:YT521-B "YT521-B" species:7227 "D... 182 8.6e-11 2
UNIPROTKB|Q96MU7 - symbol:YTHDC1 "YTH domain-containing p... 185 1.3e-10 2
UNIPROTKB|Q9H6S0 - symbol:YTHDC2 "Probable ATP-dependent ... 171 3.1e-09 1
UNIPROTKB|F1MNU7 - symbol:YTHDC2 "Uncharacterized protein... 169 5.2e-09 1
UNIPROTKB|F1RLG0 - symbol:YTHDC2 "Uncharacterized protein... 167 6.6e-09 1
UNIPROTKB|E2QZR7 - symbol:YTHDC2 "Uncharacterized protein... 166 1.1e-08 1
UNIPROTKB|F1NS70 - symbol:YTHDC2 "Uncharacterized protein... 169 5.1e-08 2
MGI|MGI:2448561 - symbol:Ythdc2 "YTH domain containing 2"... 167 8.0e-08 2
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 136 7.8e-06 1
UNIPROTKB|P35637 - symbol:FUS "RNA-binding protein FUS" s... 118 0.00058 1
UNIPROTKB|H3BPE7 - symbol:FUS "RNA-binding protein FUS" s... 116 0.00096 1
>TAIR|locus:2092815 [details] [associations]
symbol:ECT2 "evolutionarily conserved C-terminal region
2" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 EMBL:AP000603
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:AY123992
IPI:IPI00538679 RefSeq:NP_187955.2 UniGene:At.23650
UniGene:At.67751 ProteinModelPortal:Q9LJE5 SMR:Q9LJE5 STRING:Q9LJE5
PRIDE:Q9LJE5 ProMEX:Q9LJE5 EnsemblPlants:AT3G13460.1 GeneID:820548
KEGG:ath:AT3G13460 TAIR:At3g13460 InParanoid:Q9LJE5 OMA:DSRTNGR
PhylomeDB:Q9LJE5 ProtClustDB:CLSN2690909 Genevestigator:Q9LJE5
Uniprot:Q9LJE5
Length = 667
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 203/382 (53%), Positives = 263/382 (68%)
Query: 15 NPMANGPGVS-GNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHS 73
N +A+ G++ G+ S P +P Q ++ +G G + + YQDP Y+++G ++
Sbjct: 192 NNVASAAGITKGSNGSAPVKPTNQATLNTSSNLYGMGAPGGGLAA-GYQDPRYAYEGYYA 250
Query: 74 PITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHT---RPTS-- 128
P+ W D S + Q + + +G S S S+ PS RNQN+R +N H+T +P+S
Sbjct: 251 PVPWHDGSKYSDVQ-RPVSGSGVASSYSKSSTVPSSRNQNYR---SNSHYTSVHQPSSVT 306
Query: 129 ---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGY 185
A GY ++MY N +YG YG+T R+ GYGS GYDS +GRGW D+KY+ GRG
Sbjct: 307 GYGTAQGYYNRMYQNK-LYGQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGN 365
Query: 186 GASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSS--ESTPEDNLPLIP 243
+ NVDGLNELN+GPRAKG KNQ+G ++ K Q +S+ E DN ++P
Sbjct: 366 SYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVP 425
Query: 244 DKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKS 303
D+E+Y+ EDFP Y++A FFIIKSYSEDDVHKS+KYN+W STPNGNKKL AAY+EA++K+
Sbjct: 426 DREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLAAAYQEAQQKA 485
Query: 304 SDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSL 363
CP+FL FSVNASGQFVG+AEM GPVDF+ VEYWQQDKW G FPLKW I+KDVPNS L
Sbjct: 486 GGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQQDKWTGSFPLKWHIVKDVPNSLL 545
Query: 364 RHITLENNENKPVTNSRDTQEV 385
+HITLENNENKPVTNSRDTQEV
Sbjct: 546 KHITLENNENKPVTNSRDTQEV 567
>TAIR|locus:2159391 [details] [associations]
symbol:ECT3 "AT5G61020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=RCA] EMBL:CP002688
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 IPI:IPI00547508
RefSeq:NP_851236.1 UniGene:At.21835 UniGene:At.70904 PRIDE:F4K1Z0
EnsemblPlants:AT5G61020.1 GeneID:836223 KEGG:ath:AT5G61020
OMA:HASKTCI Uniprot:F4K1Z0
Length = 495
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 169/285 (59%), Positives = 214/285 (75%)
Query: 102 HSNNFPSGRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYGNTFRAGPGYGSF 160
++ ++ SG+ +L + ++G YM +Y+N M G Y N G GYGS+
Sbjct: 111 YTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMDNIYSNYGMCGPYTN----GYGYGSY 166
Query: 161 GYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPAT 220
GYDSW WY V++ YKPR GY G GKEN++GLNE+N+GPRAKGF +Q+G
Sbjct: 167 GYDSWKYMPNWYAVNNTYKPRN-GY--HGYGKENIEGLNEMNRGPRAKGFNSQDGSKVMA 223
Query: 221 VAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYN 280
V+ K Q + +E ED + L+ K+ Y+ DFPE+Y++AKF++IKSYSEDD+HKS+KY+
Sbjct: 224 VSLKEQRVTETEKLSED-VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYS 281
Query: 281 MWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQ 340
+W+STPNGNKKLDA+Y EAK+KS CPVFLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQ
Sbjct: 282 VWSSTPNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQ 341
Query: 341 QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
QDKW+GCFP+KW +KD+PNSSLRHITLENNENKPVTNSRDTQEV
Sbjct: 342 QDKWIGCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEV 386
>TAIR|locus:2095938 [details] [associations]
symbol:ECT1 "evolutionarily conserved C-terminal region
1" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019722 "calcium-mediated signaling" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] GO:GO:0005634 EMBL:CP002686 GO:GO:0019722
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
HOGENOM:HOG000238171 EMBL:AY894117 EMBL:AK317103 IPI:IPI00657449
RefSeq:NP_001030629.1 UniGene:At.27388 SMR:Q3MK94 IntAct:Q3MK94
EnsemblPlants:AT3G03950.3 GeneID:819550 KEGG:ath:AT3G03950
TAIR:At3g03950 eggNOG:NOG299038 OMA:YYEAKEN ProtClustDB:CLSN2688051
Genevestigator:Q3MK94 Uniprot:Q3MK94
Length = 428
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 173/314 (55%), Positives = 213/314 (67%)
Query: 81 SIFGGGQSKHNANAGYTSPISHSNNFPS---G--RNQNHRP--HLANFHHTR--PTSDAF 131
++ GG S + GY S +P G RN NH HL N H ++ P+ D
Sbjct: 70 NLLNGGDSIGSYPWGYIPANYPSGGYPDPRFGYDRNSNHSSFSHLMNPHSSQEVPSFDQL 129
Query: 132 GYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSG 191
GY +Y+N+ +YG YGN +G YG+FGYDSW GRGWYPVD K R +G G
Sbjct: 130 GYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYDSWKLGRGWYPVDGYRKTRSFNHGR-GYS 188
Query: 192 KENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGE 251
E D LNEL +GPR+ FKN + + + + A Q++ + D ++Y+GE
Sbjct: 189 DEKADRLNELCRGPRSSDFKNPQVLNSSMLDAMKQDVSAV------------DLQRYNGE 236
Query: 252 DFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLL 311
+FPES+ AKFF+IKSYSEDDVH +KY W+STP GNKKL+AAY EAKE S +CPV+LL
Sbjct: 237 NFPESFVKAKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLL 296
Query: 312 FSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENN 371
FSVNASGQFVG+AEMVGPVDF+KT+EYWQQDKW+GCFP+KW IIKD+PNS LRHITL NN
Sbjct: 297 FSVNASGQFVGLAEMVGPVDFNKTMEYWQQDKWIGCFPVKWHIIKDIPNSLLRHITLANN 356
Query: 372 ENKPVTNSRDTQEV 385
ENKPVTNSRDTQEV
Sbjct: 357 ENKPVTNSRDTQEV 370
>TAIR|locus:2089280 [details] [associations]
symbol:ECT5 "AT3G13060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR007275
Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347 EMBL:AK228498
IPI:IPI00526241 RefSeq:NP_187912.2 UniGene:At.39501
UniGene:At.47843 ProteinModelPortal:Q0WR25 SMR:Q0WR25 PaxDb:Q0WR25
PRIDE:Q0WR25 EnsemblPlants:AT3G13060.2 GeneID:820492
KEGG:ath:AT3G13060 TAIR:At3g13060 HOGENOM:HOG000238171
InParanoid:Q0WR25 OMA:HITKSFA PhylomeDB:Q0WR25
ProtClustDB:CLSN2690899 Genevestigator:Q0WR25 Uniprot:Q0WR25
Length = 634
Score = 653 (234.9 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 141/258 (54%), Positives = 172/258 (66%)
Query: 131 FGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDS-WISGRGWYPVDSKYKPRGRGYGASG 189
+G+ S + N Y H G + G YGS + + +GW VD+ + RGR S
Sbjct: 278 YGFGSGSNSYNRGYMHSGGRGQ-GSNYGSRLISNVGMGNQGWIGVDNS-RGRGRVSDPSL 335
Query: 190 SGKEN--VDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK 247
G N D LNE N+GPRA K Q V + L S+ + ++N + E+
Sbjct: 336 GGAYNGTFDILNEQNRGPRASKPKTQ-------VL---EELDSAADSKKNNKGSAKEHEE 385
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
+ DF Y++AK FIIKSYSED+VHKS+KYN+W STPNGNKKLDAAYREAK++ CP
Sbjct: 386 SNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAKDEKEPCP 445
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
+FLLFSVNAS QF GVAEMVGPVDF+K+V+YWQQDKW G FP+KW IIKDVPNS RHI
Sbjct: 446 LFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHII 505
Query: 368 LENNENKPVTNSRDTQEV 385
LENN+NKPVTNSRDTQEV
Sbjct: 506 LENNDNKPVTNSRDTQEV 523
Score = 50 (22.7 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 43 PNSSHGRGGLSTVVPSPSYQDPG-YSFDGIHSPI-TWLDTSIFGGGQSKHNANAGYTSPI 100
P+ H S++ P+ S Q G Y G + P+ + S +G G ++ N GY
Sbjct: 238 PSDMHRHS--SSISPALSPQPLGSYGSYGQNIPMGSQRQRSFYGFGSGSNSYNRGYM--- 292
Query: 101 SHSNNFPSGRNQNHR 115
HS G N R
Sbjct: 293 -HSGGRGQGSNYGSR 306
>TAIR|locus:2088995 [details] [associations]
symbol:ECT6 "AT3G17330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] EMBL:CP002686
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:BT025338
IPI:IPI00522737 RefSeq:NP_188359.2 UniGene:At.38744
ProteinModelPortal:Q1JPL5 SMR:Q1JPL5 PRIDE:Q1JPL5
EnsemblPlants:AT3G17330.1 GeneID:820996 KEGG:ath:AT3G17330
TAIR:At3g17330 InParanoid:Q1JPL5 OMA:RECPIFL PhylomeDB:Q1JPL5
ProtClustDB:CLSN2682185 Genevestigator:Q1JPL5 Uniprot:Q1JPL5
Length = 595
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 151/369 (40%), Positives = 197/369 (53%)
Query: 32 QRPNYQY-PYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKH 90
Q P Y PY+ P +S G S V Y DP Y SP T++ I Q
Sbjct: 52 QSPYNPYNPYI-PGASIGVDS-SFVGFQQYYSDPPYE-SAASSP-TYVPYVI----QPDM 103
Query: 91 NANAGYTSPISHSNNFPS-GRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYG 148
+N+ S +++ G Q + +A P S G Y N
Sbjct: 104 VSNSSTDSLVANGGQSDGRGSMQRNGSAIAGLPKDAPKSTTTGQYKQPGIPKNVSTTASA 163
Query: 149 NTFRAGPGYGS--FGYDSWISGRGWYPVDS-KYKPRGRGYGASGSGKENVDG---LNELN 202
++ + Y + Y G + S YKP + Y A G N G +E N
Sbjct: 164 HSLQGKTAYANTLLPYGKSDIANGVSSIASYSYKPCSKIYDARGDN--NTTGSTYTSEQN 221
Query: 203 KGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
+G R + +NQ + K K+ + E N+ + PD+ Y+ EDF YSDA+F
Sbjct: 222 RGSRTRRSRNQ-------LIVKAYTTKAGNADAEGNIVINPDR--YNKEDFSIEYSDARF 272
Query: 263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSSDCPVFLLFSVNASG 318
F+IKSYSEDDVHKS+KY +W+ST NGNKKL + Y +A+ EKS +CP+FL FSVN+SG
Sbjct: 273 FVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSG 332
Query: 319 QFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
F GVAEM GPV FD+ +++WQQDKW G FP+KW IIKDVPNS RHI L NNENKPVTN
Sbjct: 333 LFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNENKPVTN 392
Query: 379 SRDTQEVIV 387
SRDTQE+I+
Sbjct: 393 SRDTQEIIL 401
>TAIR|locus:2023807 [details] [associations]
symbol:ECT7 "AT1G48110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48286 UniGene:At.70184 IPI:IPI01019307
RefSeq:NP_001117446.1 RefSeq:NP_175245.1 ProteinModelPortal:F4HWS5
SMR:F4HWS5 PRIDE:F4HWS5 EnsemblPlants:AT1G48110.1
EnsemblPlants:AT1G48110.2 GeneID:841229 KEGG:ath:AT1G48110
OMA:NYGYYCT Uniprot:F4HWS5
Length = 639
Score = 572 (206.4 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 112/203 (55%), Positives = 144/203 (70%)
Query: 191 GKENV--DGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKY 248
G N+ D + E N+G R++ NQ + K K+ + E N+ + P + Y
Sbjct: 259 GHANIIPDTVREQNRGRRSRALGNQ-------LIVKAYTTKAGNADAEGNIVINPSQ--Y 309
Query: 249 SGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSS 304
+ ED YS+AKFF+IKSYSEDDVHKS+KYN+W+ST +GNKKL +AY +A+ EKS
Sbjct: 310 NKEDLRIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSC 369
Query: 305 DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLR 364
+CP+FL FSVNASG F G+AEM GPV FDK +++WQQDKW G FP+KW IIKDVPNS R
Sbjct: 370 ECPIFLFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFR 429
Query: 365 HITLENNENKPVTNSRDTQEVIV 387
HI L+NNENKPVTNSRDTQE+++
Sbjct: 430 HIILQNNENKPVTNSRDTQEIML 452
Score = 42 (19.8 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 157 YGSFGYDSWISGRG-WYPVDSKYKPRGRGYGASG 189
Y S ++ +G +YPVD+ Y GY + G
Sbjct: 2 YTSEAAPDFVVDQGMYYPVDASYGYYCTGYESPG 35
>TAIR|locus:2010494 [details] [associations]
symbol:ECT9 "AT1G27960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016571 "histone methylation" evidence=RCA]
EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 EMBL:BT022109 IPI:IPI00540009 RefSeq:NP_174117.2
UniGene:At.40970 ProteinModelPortal:Q500V8 SMR:Q500V8
EnsemblPlants:AT1G27960.1 GeneID:839689 KEGG:ath:AT1G27960
TAIR:At1g27960 InParanoid:Q500V8 OMA:DIFISCE PhylomeDB:Q500V8
ProtClustDB:CLSN2918485 Genevestigator:Q500V8 Uniprot:Q500V8
Length = 539
Score = 564 (203.6 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 119/243 (48%), Positives = 157/243 (64%)
Query: 149 NTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRG-YGASGSGK--ENVDGLNELNKGP 205
N F GP +G +D++ S + Y R + AS S EN L L++
Sbjct: 216 NDFNMGPAHGGL-HDAFESAANLSYREQAYAQCKRSPFSASSSSPTWENDYNLPPLDEA- 273
Query: 206 RAKGFKNQEGFDPATV---AAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
R++ + N PA + + ++S + + +++ ++ + DAKF
Sbjct: 274 RSESY-NDFSHCPAMLDMLTESNRGPRASRLNSKSKMISYDRVDRFCQQELLSQFRDAKF 332
Query: 263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVG 322
F+IKSYSED+VHKS+K+ +W ST NGNKKLDAAYREAK+K CPVFLLFSVNAS QF G
Sbjct: 333 FVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNASSQFCG 392
Query: 323 VAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDT 382
VAEMVGPVDF+ +VEYWQQD+W G FP++WLI+KDVPNS RHI +E+N+NKPVTNSRDT
Sbjct: 393 VAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVPNSLFRHIIIESNDNKPVTNSRDT 452
Query: 383 QEV 385
QEV
Sbjct: 453 QEV 455
Score = 48 (22.0 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 25/94 (26%), Positives = 40/94 (42%)
Query: 67 SFDGIHSPITWL-DTSIFGG----GQSKHNANAGYTSPIS-HSNN-FPSGRNQNHRPHLA 119
SF G+++ + L D I GQ + + G +P S HS++ PS + P +
Sbjct: 19 SFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSNHSHSDVPSFDKVS--PGMI 76
Query: 120 N--FHHTRPTSDAFGYMSQMYANNPMYGHYGNTF 151
N F+H+ F S N HYG+ +
Sbjct: 77 NEMFYHSNGVPSDFQRSSLSTRNQSSLQHYGDLY 110
>TAIR|locus:2207405 [details] [associations]
symbol:ECT8 "AT1G79270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009805 "coumarin biosynthetic process" evidence=RCA]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=RCA] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AF326910 EMBL:AY113874 IPI:IPI00530579
RefSeq:NP_565205.1 UniGene:At.25521 UniGene:At.48393
ProteinModelPortal:Q9FPE7 SMR:Q9FPE7 IntAct:Q9FPE7 STRING:Q9FPE7
PRIDE:Q9FPE7 EnsemblPlants:AT1G79270.1 GeneID:844267
KEGG:ath:AT1G79270 TAIR:At1g79270 InParanoid:Q9FPE7 OMA:TNGECES
PhylomeDB:Q9FPE7 ProtClustDB:CLSN2917492 ArrayExpress:Q9FPE7
Genevestigator:Q9FPE7 Uniprot:Q9FPE7
Length = 528
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 119/227 (52%), Positives = 154/227 (67%)
Query: 168 GRGWYPVDSKYKPRG-----RGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVA 222
GR YP+D K G A KEN +N+L G N E + ++
Sbjct: 234 GRIAYPMDPVKKKSGALNRDETEKAKARTKENGTSMNDLANGQ--DHITNGE-CESCSLD 290
Query: 223 AKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMW 282
A+G N +S+ + + +++Y+ F Y +A FF+IKSYSEDD+HKS+KYN+W
Sbjct: 291 AEG-NERSN------GVGSVIRRDQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVW 343
Query: 283 TSTPNGNKKLDAAYREAKEKSSD----CPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338
+ST NGNKKLD+AY+E+++K++D CPVFL FSVNASGQF GVAEM+G VD++K++E+
Sbjct: 344 SSTLNGNKKLDSAYQESQKKAADKSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEF 403
Query: 339 WQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
WQQDKW G FP+KW IIKDVPN LRHI LENNENKPVTNSRDTQEV
Sbjct: 404 WQQDKWTGYFPVKWHIIKDVPNPQLRHIILENNENKPVTNSRDTQEV 450
>TAIR|locus:2161213 [details] [associations]
symbol:ECT10 "evolutionarily conserved C-terminal region
10" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] EMBL:CP002688 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 IPI:IPI00522420 RefSeq:NP_974954.1 UniGene:At.28271
UniGene:At.29291 ProteinModelPortal:F4KDJ9 SMR:F4KDJ9 PRIDE:F4KDJ9
EnsemblPlants:AT5G58190.2 GeneID:835931 KEGG:ath:AT5G58190
OMA:RFCHILL PhylomeDB:F4KDJ9 Uniprot:F4KDJ9
Length = 528
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 129/346 (37%), Positives = 185/346 (53%)
Query: 61 YQDPGYSFDGIHSPITWLDTSI----------FGGGQSKHNANAGYTSPISHSNNFPSGR 110
YQ PGY F+ P L+ I FG + H + P S + P G+
Sbjct: 117 YQYPGYGFNPY--PSVMLEGQIPVSPAYYPQPFGAPSAMHYLPSDI-DPTSAAYMIPYGQ 173
Query: 111 --NQNHRPHLANFHHTR--PTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSF----GY 162
N+ + + T P G + N +G+ + G + Y
Sbjct: 174 YGGGNYSGNQGDISLTSHIPYPQTMGILGPYDHNASQVALHGSGVASSSSLGGYYHVGSY 233
Query: 163 DSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNEL--NKGPRAKG-FKNQEGFDPA 219
+ S +Y VD++ + + ++ ++L N+GPRA K++ P
Sbjct: 234 QNPSSTPSYYGVDNRVRLTPDIGKRREKDQGSISSTSDLYGNRGPRASSRVKSKNSSKPC 293
Query: 220 TVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKY 279
+ + SS + P +L Y+ +F Y +AKFFI+KS+SED+VH+S+KY
Sbjct: 294 STIGDSAS-DSSTAGPNPSL--------YNHPEFVTDYKNAKFFIVKSFSEDNVHRSIKY 344
Query: 280 NMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW 339
N+W STP+GNKKLD AYR+A++ CP+FL FSVNASGQF GV+EMVGPVDF+K YW
Sbjct: 345 NVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQFCGVSEMVGPVDFEKDAGYW 404
Query: 340 QQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
QQD+W G FP+KW I+KD+PN+ HI L+NN+NKPVT+SRD+QEV
Sbjct: 405 QQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHSRDSQEV 450
>TAIR|locus:2024286 [details] [associations]
symbol:ECT11 "AT1G09810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK221696 EMBL:AK226991 IPI:IPI00570420
RefSeq:NP_172452.3 UniGene:At.42210 ProteinModelPortal:Q56XH8
SMR:Q56XH8 PRIDE:Q56XH8 EnsemblPlants:AT1G09810.1 GeneID:837511
KEGG:ath:AT1G09810 TAIR:At1g09810 HOGENOM:HOG000137356
InParanoid:Q56XH8 OMA:WSSTING PhylomeDB:Q56XH8
ProtClustDB:CLSN2920224 Genevestigator:Q56XH8 Uniprot:Q56XH8
Length = 470
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 121/302 (40%), Positives = 171/302 (56%)
Query: 101 SHSNNFPSG--RNQNHRPHLAN--FHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPG 156
+H+ +F G R++N A+ RP + A P+ G++ R P
Sbjct: 61 AHTTDFRKGNHRDKNSSDVYADSTLRGDRPKGSNCLSQTSFSAPKPL-GNFNGAGRLPPN 119
Query: 157 YGSFGYDSWISGR---GWYPVDSKYKPRGRGYGASGSGKENVDGL---NELNKGPRAKGF 210
+ + G+ G + S K Y +G N +G + NK P G
Sbjct: 120 TQAHAFRPPFKGKEAAGQFLTFSNQKTSCVPYSGYINGNSN-NGFWDQRDHNKKPERNGE 178
Query: 211 KNQEGFDPATVAAKGQNLKSSESTP---EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKS 267
+ A + SES+P ++ L +E Y+ DF Y DAKFF+IKS
Sbjct: 179 SDYLVELKCGPRANAKTRPPSESSPLKQNNSFALALRREMYNLPDFQTDYEDAKFFVIKS 238
Query: 268 YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDC----PVFLLFSVNASGQFVGV 323
YSEDDVHKS+KY++W+ST NGNKKLDAA+R+A+ K+ + P+FL FSVNAS QFVG+
Sbjct: 239 YSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIFLFFSVNASRQFVGL 298
Query: 324 AEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQ 383
AEMVG VDF+K +++WQ DKW G FP++W ++KD+PN LRHI L+NNE+KPVT++RDT
Sbjct: 299 AEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILDNNEDKPVTHTRDTH 358
Query: 384 EV 385
E+
Sbjct: 359 EI 360
>UNIPROTKB|Q9Y5A9 [details] [associations]
symbol:YTHDF2 "YTH domain family protein 2" species:9606
"Homo sapiens" [GO:0006959 "humoral immune response" evidence=TAS]
EMBL:CH471059 GO:GO:0006959 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AL645729 eggNOG:NOG276347 HOVERGEN:HBG060315
EMBL:AF155095 EMBL:AF192968 EMBL:AF432214 EMBL:AK292581
EMBL:AK303833 EMBL:AL356786 EMBL:BC002559 IPI:IPI00306043
IPI:IPI00397024 RefSeq:NP_001166299.1 RefSeq:NP_001166599.1
RefSeq:NP_057342.2 UniGene:Hs.532286 ProteinModelPortal:Q9Y5A9
SMR:Q9Y5A9 IntAct:Q9Y5A9 STRING:Q9Y5A9 PhosphoSite:Q9Y5A9
DMDM:41019527 PaxDb:Q9Y5A9 PRIDE:Q9Y5A9 DNASU:51441
Ensembl:ENST00000373812 Ensembl:ENST00000541996
Ensembl:ENST00000542507 GeneID:51441 KEGG:hsa:51441 UCSC:uc001brc.3
CTD:51441 GeneCards:GC01P029063 HGNC:HGNC:31675 MIM:610640
neXtProt:NX_Q9Y5A9 PharmGKB:PA134964518 InParanoid:Q9Y5A9
OMA:SVPKVVG OrthoDB:EOG4001J0 PhylomeDB:Q9Y5A9 GenomeRNAi:51441
NextBio:55027 PMAP-CutDB:Q9Y5A9 ArrayExpress:Q9Y5A9 Bgee:Q9Y5A9
CleanEx:HS_YTHDF2 Genevestigator:Q9Y5A9 GermOnline:ENSG00000198492
Uniprot:Q9Y5A9
Length = 579
Score = 478 (173.3 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 98/183 (53%), Positives = 119/183 (65%)
Query: 206 RAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKF 262
R GF G D V GQ+ S STP + P++ Y+ +DF + +
Sbjct: 357 RGSGF-GHNGVDGNGV---GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRV 412
Query: 263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVG 322
FIIKSYSEDD+H+S+KYN+W ST +GNK+LDAAYR K PV+LLFSVN SG F G
Sbjct: 413 FIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCG 469
Query: 323 VAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDT 382
VAEM VD++ W QDKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDT
Sbjct: 470 VAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDT 529
Query: 383 QEV 385
QEV
Sbjct: 530 QEV 532
Score = 40 (19.1 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 179 KPRGRGYGASGSGKENVDGLNE 200
+P+G+G DGLN+
Sbjct: 10 RPKGQGNKVQNGSVHQKDGLND 31
>UNIPROTKB|Q7Z739 [details] [associations]
symbol:YTHDF3 "YTH domain family protein 3" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
EMBL:CH471068 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 HOVERGEN:HBG060315 EMBL:AK127574 EMBL:AL832005
EMBL:BX537996 EMBL:BC052970 IPI:IPI00396131 RefSeq:NP_689971.4
UniGene:Hs.491861 ProteinModelPortal:Q7Z739 SMR:Q7Z739
IntAct:Q7Z739 STRING:Q7Z739 PhosphoSite:Q7Z739 DMDM:74738853
PaxDb:Q7Z739 PRIDE:Q7Z739 DNASU:253943 GeneID:253943
KEGG:hsa:253943 UCSC:uc003xuy.3 CTD:253943 GeneCards:GC08P064081
HGNC:HGNC:26465 neXtProt:NX_Q7Z739 PharmGKB:PA134976395
InParanoid:Q7Z739 OrthoDB:EOG4RR6H8 GenomeRNAi:253943 NextBio:92198
PMAP-CutDB:Q7Z739 CleanEx:HS_YTHDF3 Genevestigator:Q7Z739
Uniprot:Q7Z739
Length = 585
Score = 449 (163.1 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 92/184 (50%), Positives = 120/184 (65%)
Query: 206 RAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK----YSGEDFPESYSDAK 261
R GF G + +S S+ E + P++ +K K Y+ +DF + + +
Sbjct: 360 RGAGFNQNNGAGSENFGLGVVPVSASPSSVEVH-PVL-EKLKAINNYNPKDFDWNLKNGR 417
Query: 262 FFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFV 321
FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR K P++LLFSVN SG F
Sbjct: 418 VFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFC 474
Query: 322 GVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRD 381
GVAEM VD++ W QDKW G F +KW+ +KDVPN+ LRHI LENN+NKPVTNSRD
Sbjct: 475 GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRD 534
Query: 382 TQEV 385
TQEV
Sbjct: 535 TQEV 538
Score = 57 (25.1 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 39/140 (27%), Positives = 55/140 (39%)
Query: 29 SKPQRPNYQYPYLDPNSSHGRGGLSTV--VPSPSYQDPGYSFDGIHSPITWLDTSIFGGG 86
S P P+Y P + S G ST P P G +G H ++ +F
Sbjct: 53 SDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHH---YIPDGVF--- 106
Query: 87 QSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGH 146
S+ A G T P + F N P A+F T TS + G +Q A + YG+
Sbjct: 107 -SQPGA-LGNTPPFLGQHGF------NFFPGNADFS-TWGTSGSQGQSTQSSAYSSSYGY 157
Query: 147 YGNTF-RA-GPGYGSFGYDS 164
++ RA G FG D+
Sbjct: 158 PPSSLGRAITDGQAGFGNDT 177
Score = 38 (18.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 22 GVSGNGRSKPQRPNYQYPYLDPNSSHGR 49
G SG+ Q Y Y P SS GR
Sbjct: 137 GTSGSQGQSTQSSAYSSSYGYPPSSLGR 164
>MGI|MGI:1917431 [details] [associations]
symbol:Ythdf1 "YTH domain family 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1917431 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
EMBL:AK046768 EMBL:AK172582 EMBL:BC061479 EMBL:BC065050
IPI:IPI00187444 RefSeq:NP_776122.1 UniGene:Mm.30205
ProteinModelPortal:P59326 SMR:P59326 STRING:P59326
PhosphoSite:P59326 PaxDb:P59326 PRIDE:P59326
Ensembl:ENSMUST00000037299 GeneID:228994 KEGG:mmu:228994 CTD:54915
HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
ChiTaRS:YTHDF1 NextBio:379293 Bgee:P59326 CleanEx:MM_YTHDF1
Genevestigator:P59326 GermOnline:ENSMUSG00000038848 Uniprot:P59326
Length = 559
Score = 451 (163.8 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 87/163 (53%), Positives = 111/163 (68%)
Query: 223 AKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMW 282
A+ + S ES P L + Y+ ++F + + FIIKSYSEDD+H+S+KY++W
Sbjct: 354 AQPTSAPSVESHPV--LEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIW 411
Query: 283 TSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQD 342
ST +GNK+LD A+R K PV+LLFSVN SG F GVAEM PVD+ + W QD
Sbjct: 412 CSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQD 468
Query: 343 KWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
KW G F +KW+ +KDVPN+ LRHI LENN+NKPVTNSRDTQEV
Sbjct: 469 KWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV 511
Score = 54 (24.1 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 43/177 (24%), Positives = 60/177 (33%)
Query: 13 KDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPS-PSYQDPGYSFDGI 71
+DN + NG S + + +++ PYL S+ S P SY P F
Sbjct: 14 QDNKVQNG---SLHQKDAVHDNDFE-PYLSGQSNPSNSYPSMSDPYLSSYYPPSIGFPYS 69
Query: 72 HSPITWLDTSIFGGGQSKHNANAGYTSP----ISHSNNF--PSGRNQNHRPHLANFHHTR 125
S W S G + G S H F P G N H NF
Sbjct: 70 LSEAPW---STAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIYQHRFNFFPEN 126
Query: 126 PTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRG 182
P A+G S YG+++ P S G + + G+ + DS K G
Sbjct: 127 PAFSAWG-TSGSQGQQTQSSAYGSSYTYPPS--SLG-GTVVDGQTGFHSDSLNKAPG 179
Score = 37 (18.1 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 11 SNKDNPMANGPGVSGNGRSKPQRPNYQYPY 40
S + NP + P +S S P+ +PY
Sbjct: 39 SGQSNPSNSYPSMSDPYLSSYYPPSIGFPY 68
>MGI|MGI:1918850 [details] [associations]
symbol:Ythdf3 "YTH domain family 3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1918850 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
HOGENOM:HOG000232058 HOVERGEN:HBG060315 CTD:253943
OrthoDB:EOG4RR6H8 EMBL:AK137245 EMBL:AK039176 EMBL:AK053736
EMBL:BC057158 EMBL:BC067040 EMBL:BC067042 IPI:IPI00227149
IPI:IPI00465894 IPI:IPI00742314 RefSeq:NP_001139391.1
RefSeq:NP_766265.3 UniGene:Mm.23834 ProteinModelPortal:Q8BYK6
SMR:Q8BYK6 STRING:Q8BYK6 PhosphoSite:Q8BYK6 PaxDb:Q8BYK6
PRIDE:Q8BYK6 Ensembl:ENSMUST00000108345 Ensembl:ENSMUST00000108346
GeneID:229096 KEGG:mmu:229096 UCSC:uc008org.2 UCSC:uc008orh.2
UCSC:uc008ori.2 OMA:STGMTSI ChiTaRS:YTHDF3 NextBio:379337
Bgee:Q8BYK6 CleanEx:MM_YTHDF3 Genevestigator:Q8BYK6 Uniprot:Q8BYK6
Length = 585
Score = 449 (163.1 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 92/184 (50%), Positives = 120/184 (65%)
Query: 206 RAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK----YSGEDFPESYSDAK 261
R GF G + +S S+ E + P++ +K K Y+ +DF + + +
Sbjct: 360 RGTGFNQNNGTGSENFGLGVVPVSASPSSVEVH-PVL-EKLKAINNYNPKDFDWNLKNGR 417
Query: 262 FFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFV 321
FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR K P++LLFSVN SG F
Sbjct: 418 VFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFC 474
Query: 322 GVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRD 381
GVAEM VD++ W QDKW G F +KW+ +KDVPN+ LRHI LENN+NKPVTNSRD
Sbjct: 475 GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRD 534
Query: 382 TQEV 385
TQEV
Sbjct: 535 TQEV 538
Score = 56 (24.8 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 39/140 (27%), Positives = 55/140 (39%)
Query: 29 SKPQRPNYQYPYLDPNSSHGRGGLSTV--VPSPSYQDPGYSFDGIHSPITWLDTSIFGGG 86
S P P+Y P + S G ST P P G +G H ++ +F
Sbjct: 53 SDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHH---YIPDGVF--- 106
Query: 87 QSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGH 146
S+ A G T P + F N P A+F T TS + G +Q A + YG+
Sbjct: 107 -SQPGA-LGNTPPFLGQHGF------NFFPGNADFS-TWGTSGSQGQSTQNSAYSSSYGY 157
Query: 147 YGNTF-RA-GPGYGSFGYDS 164
++ RA G FG D+
Sbjct: 158 PPSSLGRAITDGQAGFGNDT 177
Score = 39 (18.8 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 22 GVSGNGRSKPQRPNYQYPYLDPNSSHGR 49
G SG+ Q Y Y P SS GR
Sbjct: 137 GTSGSQGQSTQNSAYSSSYGYPPSSLGR 164
>ZFIN|ZDB-GENE-040426-2786 [details] [associations]
symbol:ythdf1 "YTH domain family, member 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-040426-2786 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
CTD:54915 HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
EMBL:BX649575 EMBL:CR759927 EMBL:BC046885 IPI:IPI00501109
RefSeq:NP_997878.1 UniGene:Dr.116333 Ensembl:ENSDART00000025171
GeneID:327606 KEGG:dre:327606 InParanoid:Q802Z0 OMA:PSMTDPY
NextBio:20810106 Uniprot:Q802Z0
Length = 614
Score = 444 (161.4 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 82/138 (59%), Positives = 103/138 (74%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
Y+ ++F + + + FIIKSYSEDD+H+S+KY++W ST +GNK+LD+A+R K P
Sbjct: 417 YNPKEFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRAINGKG---P 473
Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
V+LLFSVN SG F GVAEM PVD+ + W QDKW G F + WL +KDVPNS LRHI
Sbjct: 474 VYLLFSVNGSGHFCGVAEMRSPVDYGTSAGVWAQDKWKGKFDVDWLFVKDVPNSQLRHIR 533
Query: 368 LENNENKPVTNSRDTQEV 385
LENN+NKPVTNSRDTQEV
Sbjct: 534 LENNDNKPVTNSRDTQEV 551
Score = 55 (24.4 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 20/76 (26%), Positives = 27/76 (35%)
Query: 107 PSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWI 166
P G + PH NF P A+G S YG ++ P S G
Sbjct: 108 PGGLGSSIYPHRFNFFPENPAFSAWG-TSGSQGQQTQSSAYGGSYSYPPS--SLGGTLVP 164
Query: 167 SGRGWYPVDSKYKPRG 182
G+ +P D+ K G
Sbjct: 165 DGQTGFPSDTLNKAPG 180
Score = 44 (20.5 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 14 DNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVP 57
+NP + G SG+ + Q Y Y P SS G T+VP
Sbjct: 125 ENPAFSAWGTSGSQGQQTQSSAYGGSYSYPPSSLG----GTLVP 164
>CGD|CAL0002569 [details] [associations]
symbol:orf19.1939 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 67/142 (47%), Positives = 95/142 (66%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSS--- 304
Y+G F + +KFF+IKSY+ DV+ S +N+WTST GN++LD AY E + ++
Sbjct: 205 YTGAIFTVPKT-SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDV 263
Query: 305 DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW-QQDKWVGCFPLKWLIIKDVPNSSL 363
D +FL FSVN+SG+F G+AEM +DF W +Q +W G FP++WL+IKDVPN
Sbjct: 264 DGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWCEQTRWKGIFPVEWLLIKDVPNKFF 323
Query: 364 RHITLENNENKPVTNSRDTQEV 385
+H+ + N+ K VTNSRDTQE+
Sbjct: 324 QHLKIPANDYKLVTNSRDTQEI 345
>UNIPROTKB|Q5A1Q7 [details] [associations]
symbol:CaO19.1939 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 67/142 (47%), Positives = 95/142 (66%)
Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSS--- 304
Y+G F + +KFF+IKSY+ DV+ S +N+WTST GN++LD AY E + ++
Sbjct: 205 YTGAIFTVPKT-SKFFVIKSYNILDVNASFIHNIWTSTELGNRRLDKAYTELSKTNNPDV 263
Query: 305 DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW-QQDKWVGCFPLKWLIIKDVPNSSL 363
D +FL FSVN+SG+F G+AEM +DF W +Q +W G FP++WL+IKDVPN
Sbjct: 264 DGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWCEQTRWKGIFPVEWLLIKDVPNKFF 323
Query: 364 RHITLENNENKPVTNSRDTQEV 385
+H+ + N+ K VTNSRDTQE+
Sbjct: 324 QHLKIPANDYKLVTNSRDTQEI 345
>SGD|S000002782 [details] [associations]
symbol:YDR374C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
SGD:S000002782 EMBL:BK006938 EMBL:U28373 KO:K02139
RefSeq:NP_010665.3 GeneID:851983 KEGG:sce:YDR377W
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 RefSeq:NP_010662.3
GeneID:851980 KEGG:sce:YDR374C PIR:S61169 ProteinModelPortal:Q06390
SMR:Q06390 DIP:DIP-5677N IntAct:Q06390 MINT:MINT-514883
STRING:Q06390 EnsemblFungi:YDR374C CYGD:YDR374c eggNOG:NOG276347
GeneTree:ENSGT00390000017549 HOGENOM:HOG000001065 OrthoDB:EOG4K9FMS
NextBio:970124 Genevestigator:Q06390 GermOnline:YDR374C
Uniprot:Q06390
Length = 306
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 55/128 (42%), Positives = 83/128 (64%)
Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
+++FF+IKS S V +S +W+ST GNK+L AY K+ +S VFL FS+N SG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAY---KKLNSGAKVFLFFSINTSG 210
Query: 319 QFVGVAEMVGPVDFDKTVEYWQQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
+F GVAEMV + D W+ ++ G F ++W+I++D+ N SL+ + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270
Query: 378 NSRDTQEV 385
+SRDTQE+
Sbjct: 271 HSRDTQEI 278
>ZFIN|ZDB-GENE-041114-114 [details] [associations]
symbol:ythdc1 "YTH domain containing 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-041114-114 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:91746 HOVERGEN:HBG055528 EMBL:BC085378
IPI:IPI00509525 RefSeq:NP_001007411.1 UniGene:Dr.84175
ProteinModelPortal:Q5U3V6 SMR:Q5U3V6 PRIDE:Q5U3V6 GeneID:492769
KEGG:dre:492769 InParanoid:Q5U3V6 NextBio:20865266 Bgee:Q5U3V6
Uniprot:Q5U3V6
Length = 679
Score = 178 (67.7 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 54/203 (26%), Positives = 94/203 (46%)
Query: 189 GSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKY 248
G+ + + D +E + R++ +G + +A G + SE E + D K
Sbjct: 231 GNEQNDYDTRSEASDS-RSESVSFSDG--ESVHSASGSDASGSEKKHEKLSSSVRDVRKD 287
Query: 249 SGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPV 308
+A+FF+IKS + ++V + +W++ P KKL+AA+R A+ V
Sbjct: 288 RINKLKHILREARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRAARS------V 341
Query: 309 FLLFSVNASGQFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPNSS 362
L+FSV SG+F G A + + +W K +G F + W+ +++P +
Sbjct: 342 VLIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLGGVFKIDWICRRELPFTK 401
Query: 363 LRHITLENNENKPVTNSRDTQEV 385
H+ NE+KPV RD QE+
Sbjct: 402 TAHLANPWNEHKPVKIGRDGQEI 424
Score = 57 (25.1 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 12 NKDNPMANGPGVSGNGRSKPQRPNYQY-P---YLDPNSSHGRGGLSTVVPSPSYQDPGYS 67
N PM SG+ K P ++ P Y D + GRGG S S Y + G S
Sbjct: 66 NTRQPMKRAAPSSGSNGKKTSNPRGRHAPEDLYDDRKNHSGRGGASRADLSKGYGEKGLS 125
>TAIR|locus:2118046 [details] [associations]
symbol:AT4G11970 "AT4G11970" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48848 UniGene:At.68491 IPI:IPI00541281
RefSeq:NP_192934.2 ProteinModelPortal:F4JPV2 SMR:F4JPV2
PRIDE:F4JPV2 EnsemblPlants:AT4G11970.1 GeneID:826804
KEGG:ath:AT4G11970 OMA:GIWATQV PhylomeDB:F4JPV2 Uniprot:F4JPV2
Length = 444
Score = 183 (69.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 58/205 (28%), Positives = 95/205 (46%)
Query: 187 ASGSGKENVDGLNE-LNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDK 245
+S + KEN ++ L + G N + + + +K + S N P +
Sbjct: 2 SSDTAKENASVVDSSLTDWKQDLG--NSDDPESTSYRSKEDHKLSKVDVDRRNFPDQLES 59
Query: 246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSD 305
K + P Y ++FIIKS + D++ SV+ +W + L+ A+ ++
Sbjct: 60 AKANKNSKP-GYR-TRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR---- 113
Query: 306 CPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPN 360
V L+FSVN SG F G AEM+ PV + + + W Q + W F +KWL + ++P
Sbjct: 114 --VILIFSVNMSGFFQGYAEMLSPVGWRRD-QIWSQGGGKNNPWGRSFKVKWLRLSELPF 170
Query: 361 SSLRHITLENNENKPVTNSRDTQEV 385
H+ N+ KPV SRD QE+
Sbjct: 171 QKTLHLKNPLNDYKPVKISRDCQEL 195
>RGD|621706 [details] [associations]
symbol:Ythdc1 "YTH domain containing 1" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] RGD:621706 GO:GO:0016604 GO:GO:0000398
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 CTD:91746
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
OrthoDB:EOG4ZW5BC EMBL:D78303 EMBL:AF144731 IPI:IPI00196301
IPI:IPI00213467 RefSeq:NP_596914.1 UniGene:Rn.48752
ProteinModelPortal:Q9QY02 SMR:Q9QY02 STRING:Q9QY02
PhosphoSite:Q9QY02 PRIDE:Q9QY02 GeneID:170956 KEGG:rno:170956
UCSC:RGD:621706 InParanoid:Q9QY02 NextBio:621483
ArrayExpress:Q9QY02 Genevestigator:Q9QY02
GermOnline:ENSRNOG00000001996 Uniprot:Q9QY02
Length = 738
Score = 187 (70.9 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 61/205 (29%), Positives = 96/205 (46%)
Query: 188 SGSGKENVDGLNELNKG-PRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKE 246
SGSG DG +E K RA+G + FD + +A ++ SE E +
Sbjct: 290 SGSG---TDGSDEKKKERKRARGI-SPIVFDRSGSSAS-ESYAGSEKKHEKLSSSVRAVR 344
Query: 247 KYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDC 306
K DA+FF+IKS + ++V + +W++ P KKL+ A+R A+
Sbjct: 345 KDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----- 399
Query: 307 PVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPN 360
V L+FSV SG+F G A + + +W K +G F + W+ +++P
Sbjct: 400 -VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPF 458
Query: 361 SSLRHITLENNENKPVTNSRDTQEV 385
+ H+T NE+KPV RD QE+
Sbjct: 459 TKSAHLTNPWNEHKPVKIGRDGQEI 483
Score = 38 (18.4 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 2 ADKVSLSVESNKDNPMANGPGVSGNGRSKPQR 33
+D S SV S D + +G G G+ K +R
Sbjct: 274 SDSGSESV-SFTDGSVRSGSGTDGSDEKKKER 304
>FB|FBgn0027616 [details] [associations]
symbol:YT521-B "YT521-B" species:7227 "Drosophila
melanogaster" [GO:0016604 "nuclear body" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] EMBL:AE014296 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 FlyBase:FBgn0027616 UniGene:Dm.7409 GeneID:38420
KEGG:dme:Dmel_CG12076 CTD:38420 GeneTree:ENSGT00690000102240
GenomeRNAi:38420 NextBio:808571 RefSeq:NP_647811.2
ProteinModelPortal:Q9VZQ1 SMR:Q9VZQ1 IntAct:Q9VZQ1
EnsemblMetazoa:FBtr0073078 UCSC:CG12076-RA InParanoid:Q9VZQ1
OMA:ADYMRNM PhylomeDB:Q9VZQ1 ArrayExpress:Q9VZQ1 Bgee:Q9VZQ1
Uniprot:Q9VZQ1
Length = 721
Score = 182 (69.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 52/167 (31%), Positives = 78/167 (46%)
Query: 230 SSESTPE-DNLPLIPDKEKYSGEDFPES----YSDAKFFIIKSYSEDDVHKSVKYNMWTS 284
S STPE D++ G D+ + D +FF+IKS + D+V S ++W +
Sbjct: 219 SKSSTPEKDSVGGGTHSHSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWAT 278
Query: 285 TPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKW 344
P + L+ A++EA+ V L+FSVN SG+F G A M P D W
Sbjct: 279 LPQNDANLNQAFKEARN------VLLIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPS 332
Query: 345 V------GCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
+ G L W+ K++ ++ H+ NE KPV RD QE+
Sbjct: 333 ISPKALGGVIELDWICRKELSFNATLHLHNTWNEGKPVKIGRDGQEI 379
Score = 43 (20.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 2 ADKVSLSVESNKDNPMANGPGVSGNGRSKP 31
+D S +S + G G GNGR KP
Sbjct: 189 SDSESSDSDSGTQHKRNGGNG-GGNGRGKP 217
>UNIPROTKB|Q96MU7 [details] [associations]
symbol:YTHDC1 "YTH domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0016604 GO:GO:0000398 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK056430 EMBL:AC074378 EMBL:BC041119
EMBL:BC053863 EMBL:AB075846 IPI:IPI00144293 IPI:IPI00376222
RefSeq:NP_001026902.1 RefSeq:NP_588611.2 UniGene:Hs.175955 PDB:2YUD
PDBsum:2YUD ProteinModelPortal:Q96MU7 SMR:Q96MU7 IntAct:Q96MU7
STRING:Q96MU7 PhosphoSite:Q96MU7 DMDM:47606762 PaxDb:Q96MU7
PRIDE:Q96MU7 Ensembl:ENST00000344157 Ensembl:ENST00000355665
GeneID:91746 KEGG:hsa:91746 UCSC:uc003hdx.3 UCSC:uc003hdy.3
CTD:91746 GeneCards:GC04M069176 HGNC:HGNC:30626 HPA:HPA036462
HPA:HPA036463 neXtProt:NX_Q96MU7 PharmGKB:PA143485673
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
InParanoid:Q96MU7 OMA:VIHKMRH OrthoDB:EOG4ZW5BC PhylomeDB:Q96MU7
ChiTaRS:YTHDC1 EvolutionaryTrace:Q96MU7 GenomeRNAi:91746
NextBio:77419 Bgee:Q96MU7 CleanEx:HS_YTHDC1 Genevestigator:Q96MU7
GermOnline:ENSG00000083896 Uniprot:Q96MU7
Length = 727
Score = 185 (70.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 61/205 (29%), Positives = 96/205 (46%)
Query: 188 SGSGKENVDGLNELNKG-PRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKE 246
SGSG DG +E K RA+G + FD + +A ++ SE E +
Sbjct: 287 SGSG---TDGSDEKKKERKRARGI-SPIVFDRSGSSAS-ESYAGSEKKHEKLSSSVRAVR 341
Query: 247 KYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDC 306
K DA+FF+IKS + ++V + +W++ P KKL+ A+R A+
Sbjct: 342 KDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----- 396
Query: 307 PVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW-----QQDKWVG-CFPLKWLIIKDVPN 360
V L+FSV SG+F G A + + +W K +G F + W+ +++P
Sbjct: 397 -VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPF 455
Query: 361 SSLRHITLENNENKPVTNSRDTQEV 385
+ H+T NE+KPV RD QE+
Sbjct: 456 TKSAHLTNPWNEHKPVKIGRDGQEI 480
Score = 38 (18.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 2 ADKVSLSVESNKDNPMANGPGVSGNGRSKPQR 33
+D S SV S D + +G G G+ K +R
Sbjct: 271 SDSGSESV-SFTDGSVRSGSGTDGSDEKKKER 301
>UNIPROTKB|Q9H6S0 [details] [associations]
symbol:YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AC093208 EMBL:AC010389 EMBL:BC137285
EMBL:AK025593 IPI:IPI00010200 RefSeq:NP_073739.3 UniGene:Hs.231942
PDB:2YU6 PDBsum:2YU6 ProteinModelPortal:Q9H6S0 SMR:Q9H6S0
IntAct:Q9H6S0 PhosphoSite:Q9H6S0 DMDM:239938805 PaxDb:Q9H6S0
PeptideAtlas:Q9H6S0 PRIDE:Q9H6S0 Ensembl:ENST00000161863
GeneID:64848 KEGG:hsa:64848 UCSC:uc003kqn.3 CTD:64848
GeneCards:GC05P112877 HGNC:HGNC:24721 HPA:HPA037364
neXtProt:NX_Q9H6S0 PharmGKB:PA134912676 HOGENOM:HOG000155703
HOVERGEN:HBG063891 InParanoid:Q9H6S0 OMA:RAFWESS OrthoDB:EOG4JWVCN
PhylomeDB:Q9H6S0 EvolutionaryTrace:Q9H6S0 GenomeRNAi:64848
NextBio:66962 ArrayExpress:Q9H6S0 Bgee:Q9H6S0 CleanEx:HS_YTHDC2
Genevestigator:Q9H6S0 GermOnline:ENSG00000047188 Uniprot:Q9H6S0
Length = 1430
Score = 171 (65.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 49/167 (29%), Positives = 85/167 (50%)
Query: 227 NLKSSESTPEDN---LPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
+LKS++S+ + P P K S P ++FI+KS + ++ S + +W+
Sbjct: 1252 SLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWS 1311
Query: 284 STPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 343
+TP+ +KL+ A+ E+ V+L+FSV SG F G + M + +K+ + W
Sbjct: 1312 TTPSNERKLNRAFWESSI------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAG 1364
Query: 344 WVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV--IVG 388
G F ++W+ + +P H+ N+NK V SRD QE+ +VG
Sbjct: 1365 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVG 1411
>UNIPROTKB|F1MNU7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:64848 OMA:RAFWESS EMBL:DAAA02027655
IPI:IPI00689346 RefSeq:NP_001179740.1 UniGene:Bt.24975
ProteinModelPortal:F1MNU7 Ensembl:ENSBTAT00000018745 GeneID:541024
KEGG:bta:541024 NextBio:20878969 Uniprot:F1MNU7
Length = 1429
Score = 169 (64.5 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 47/162 (29%), Positives = 83/162 (51%)
Query: 227 NLKSSEST--PEDNL-PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
++KS++S+ P P P K S P+ ++FI+KS + ++ S + +W+
Sbjct: 1251 SVKSTDSSNYPSPCASPSPPSSAKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWS 1310
Query: 284 STPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 343
+TP+ +KL+ A+ E+ V+L+FSV SG F G + M + +K+ + W
Sbjct: 1311 TTPSNERKLNRAFWESSM------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAG 1363
Query: 344 WVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
G F ++W+ + +P H+ N+NK V SRD QE+
Sbjct: 1364 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQEL 1405
>UNIPROTKB|F1RLG0 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002110 InterPro:IPR001650
InterPro:IPR007502 Pfam:PF00271 Pfam:PF04408 PROSITE:PS50088
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00700000104393
InterPro:IPR011709 Pfam:PF07717 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:CU462841
Ensembl:ENSSSCT00000015529 Uniprot:F1RLG0
Length = 1151
Score = 167 (63.8 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 46/162 (28%), Positives = 82/162 (50%)
Query: 227 NLKSSESTPEDN---LPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
++KS++S+ + P P K S P ++FI+KS + ++ S + +W+
Sbjct: 973 SVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWS 1032
Query: 284 STPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 343
+TP+ +KL+ A+ E+ V+L+FSV SG F G + M + +K+ + W
Sbjct: 1033 TTPSNERKLNRAFWESSM------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAG 1085
Query: 344 WVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
G F ++W+ + +P H+ N+NK V SRD QE+
Sbjct: 1086 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQEL 1127
>UNIPROTKB|E2QZR7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 GO:GO:0008026
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 OMA:RAFWESS
EMBL:AAEX03007702 Ensembl:ENSCAFT00000000357 Uniprot:E2QZR7
Length = 1376
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/162 (28%), Positives = 82/162 (50%)
Query: 227 NLKSSESTPEDN---LPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
++KS++S+ + P P K S P ++FI+KS + ++ S + +W+
Sbjct: 1198 SVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWS 1257
Query: 284 STPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 343
+TP+ +KL+ A+ E+ V+L+FSV SG F G + M + +K+ + W
Sbjct: 1258 TTPSNERKLNRAFWESSM------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAG 1310
Query: 344 WVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
G F ++W+ + +P H+ N+NK V SRD QE+
Sbjct: 1311 LGGVFKVEWVRKESLPFQFAHHLLNPWNDNKKVQISRDGQEL 1352
>UNIPROTKB|F1NS70 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:AADN02056192 EMBL:AADN02056193
IPI:IPI00591470 Ensembl:ENSGALT00000000247 Uniprot:F1NS70
Length = 1339
Score = 169 (64.5 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 227 NLKSSEST--PEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTS 284
++KS++S+ P + P K S P ++FI+KS + ++ S + +W++
Sbjct: 1160 SVKSTDSSCYPSPCVSPSPVSGKGSKTPSPRLSMPVRYFIMKSSNLQNLDISQQKGIWST 1219
Query: 285 TPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKW 344
TP+ +KL+ A+ E+ V+L+FSV SG F G A M + +++ + W
Sbjct: 1220 TPSNEQKLNRAFWESSL------VYLIFSVQGSGHFQGFARMSSEIGCEQS-QCWGSTGL 1272
Query: 345 VGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
G F ++W+ + +P H+ N+NK V SRD QE+
Sbjct: 1273 GGVFKVEWIRKESIPFQFTHHLLNPWNDNKEVQISRDGQEL 1313
Score = 37 (18.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 64 PGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSN 104
PGY D I I+ D IF + NA++ Y + HSN
Sbjct: 540 PGY--DEI---ISLRDRIIFDDKRFVDNAHSKYQVFMLHSN 575
>MGI|MGI:2448561 [details] [associations]
symbol:Ythdc2 "YTH domain containing 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
MGI:MGI:2448561 GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683
Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
GeneTree:ENSGT00700000104393 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
CTD:64848 HOGENOM:HOG000155703 OMA:RAFWESS OrthoDB:EOG4JWVCN
EMBL:BC138263 EMBL:BC171951 IPI:IPI00343249 RefSeq:NP_001156485.1
UniGene:Mm.244482 ProteinModelPortal:B2RR83 SMR:B2RR83
PhosphoSite:B2RR83 PaxDb:B2RR83 PRIDE:B2RR83
Ensembl:ENSMUST00000037763 GeneID:240255 KEGG:mmu:240255
UCSC:uc008evb.2 InParanoid:B2RR83 ChiTaRS:YTHDC2 NextBio:384522
Bgee:B2RR83 Genevestigator:B2RR83 Uniprot:B2RR83
Length = 1445
Score = 167 (63.8 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 46/162 (28%), Positives = 82/162 (50%)
Query: 227 NLKSSESTPEDN---LPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWT 283
++KS++S+ + P P K S P ++FI+KS + ++ S + +W+
Sbjct: 1267 SVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWS 1326
Query: 284 STPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDK 343
+TP+ +KL+ A+ E+ V+L+FSV SG F G + M + +K+ + W
Sbjct: 1327 TTPSNERKLNRAFWESSM------VYLVFSVQGSGHFQGFSRMSSEIGREKSQD-WGSAG 1379
Query: 344 WVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
G F ++W+ + +P H+ N+NK V SRD QE+
Sbjct: 1380 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQEL 1421
Score = 38 (18.4 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 182 GRGYGASGSGKENVDGLNELNKGP----RAKGFKN 212
G G G SG G G + GP RAKG K+
Sbjct: 20 GGGGGGSGGGGGGGGG-GPASCGPGGGGRAKGLKD 53
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 136 (52.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 226 QNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTST 285
Q +S + +P D+ + P+ + ++F++KS + ++ SV+ +W +
Sbjct: 205 QPQQSQHQVSQTLIPNPADQTNRTSHPLPQGVN--RYFVVKSNNRENFELSVQQGVWATQ 262
Query: 286 PNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQD--- 342
+ KL+ A+ + V L+FSVN + F G A+M + W+ +
Sbjct: 263 RSNEAKLNEAFDSVEN------VILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGT 316
Query: 343 -KWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
++ F +KWL + ++ R++ NEN PV SRD QE+
Sbjct: 317 AQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQEL 360
>UNIPROTKB|P35637 [details] [associations]
symbol:FUS "RNA-binding protein FUS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008219 GO:GO:0008270 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 Orphanet:803 GO:GO:0000398
EMBL:AJ295163 MIM:612160 eggNOG:NOG240581 KO:K13098 Orphanet:275872
Orphanet:79105 EMBL:S62138 PIR:S33798 HOGENOM:HOG000038010 CTD:2521
ChiTaRS:FUS OrthoDB:EOG4DV5NH EMBL:S62140 EMBL:X71427 EMBL:X71428
EMBL:AF071213 EMBL:AC009088 EMBL:BC000402 EMBL:BC002459
IPI:IPI00221354 IPI:IPI00260715 PIR:S33799 RefSeq:NP_001164105.1
RefSeq:NP_004951.1 UniGene:Hs.46894 PDB:2LA6 PDB:2LCW PDB:4FDD
PDBsum:2LA6 PDBsum:2LCW PDBsum:4FDD ProteinModelPortal:P35637
SMR:P35637 DIP:DIP-29857N IntAct:P35637 MINT:MINT-5005976
STRING:P35637 PhosphoSite:P35637 DMDM:544357 PaxDb:P35637
PRIDE:P35637 DNASU:2521 Ensembl:ENST00000254108
Ensembl:ENST00000380244 GeneID:2521 KEGG:hsa:2521 UCSC:uc002ebe.2
UCSC:uc002ebh.3 GeneCards:GC16P031191 HGNC:HGNC:4010 HPA:HPA008784
MIM:137070 MIM:608030 MIM:614782 neXtProt:NX_P35637 Orphanet:99967
PharmGKB:PA28425 HOVERGEN:HBG095056 InParanoid:P35637 OMA:YGTQSTP
PhylomeDB:P35637 GenomeRNAi:2521 NextBio:9927 ArrayExpress:P35637
Bgee:P35637 CleanEx:HS_FUS Genevestigator:P35637
GermOnline:ENSG00000089280 Uniprot:P35637
Length = 526
Score = 118 (46.6 bits), Expect = 0.00058, P = 0.00058
Identities = 67/266 (25%), Positives = 103/266 (38%)
Query: 13 KDNPMANGPGVSGNGRSKPQRPNY----QYP-YLD---PNSSHGRGGLSTVVPSPSYQDP 64
+ P G G G S+ + +Y YP Y P+S+ G G S+ S SY P
Sbjct: 69 QSTPQGYG-STGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSS--QSSSYGQP 125
Query: 65 GYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHT 124
S P +G QS +N GY ++++ G + +
Sbjct: 126 -QSGSYSQQPSYGGQQQSYGQQQS-YNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSS 183
Query: 125 RPTSDAFG--YMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRG 182
+ G Y +Q + G YG R G G G G G G+ Y+PRG
Sbjct: 184 MSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG 243
Query: 183 RGYGASGSGKENVDGLNELNK--GPRAKGFKN---QEGFDPATVAAKG--QNLKSSESTP 235
RG G G G NK GPR +G ++ Q+ D T+ +G +N+ + ES
Sbjct: 244 RGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENV-TIESVA 302
Query: 236 E--DNLPLIPDKEKYSGEDFPESYSD 259
+ + +I +K +G+ Y+D
Sbjct: 303 DYFKQIGIIKTNKK-TGQPMINLYTD 327
>UNIPROTKB|H3BPE7 [details] [associations]
symbol:FUS "RNA-binding protein FUS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
ChiTaRS:FUS EMBL:AC009088 HGNC:HGNC:4010 ProteinModelPortal:H3BPE7
SMR:H3BPE7 Ensembl:ENST00000568685 Bgee:H3BPE7 Uniprot:H3BPE7
Length = 527
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 67/267 (25%), Positives = 103/267 (38%)
Query: 13 KDNPMANGPGVSGNGRSKPQRPNY----QYP-YLD---PNSSHGRGGLSTVVPSPSYQDP 64
+ P G G G S+ + +Y YP Y P+S+ G G S+ S SY P
Sbjct: 69 QSTPQGYG-STGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSS--QSSSYGQP 125
Query: 65 GYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHT 124
S P +G QS +N GY ++++ G + +
Sbjct: 126 -QSGSYSQQPSYGGQQQSYGQQQS-YNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSS 183
Query: 125 RPTSDAFG--YMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRG 182
+ G Y +Q + G YG R G G G G G G+ Y+PRG
Sbjct: 184 MSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG 243
Query: 183 RGYGASGSGKENVDGLNELNK--GPRAKGFKN----QEGFDPATVAAKG--QNLKSSEST 234
RG G G G NK GPR +G ++ Q+ D T+ +G +N+ + ES
Sbjct: 244 RGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSAEQDNSDNNTIFVQGLGENV-TIESV 302
Query: 235 PE--DNLPLIPDKEKYSGEDFPESYSD 259
+ + +I +K +G+ Y+D
Sbjct: 303 ADYFKQIGIIKTNKK-TGQPMINLYTD 328
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.132 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 388 388 0.00093 117 3 11 23 0.50 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 621 (66 KB)
Total size of DFA: 288 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.23u 0.10s 39.33t Elapsed: 00:00:02
Total cpu time: 39.23u 0.10s 39.33t Elapsed: 00:00:02
Start: Sat May 11 10:18:50 2013 End: Sat May 11 10:18:52 2013