Query 016485
Match_columns 388
No_of_seqs 177 out of 354
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 6.4E-67 1.4E-71 531.8 24.5 251 130-388 176-427 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 1.2E-47 2.7E-52 335.5 9.6 124 259-388 1-128 (140)
3 KOG1902 Putative signal transd 100.0 4.6E-41 1E-45 330.5 8.8 134 246-387 60-198 (441)
4 PRK00809 hypothetical protein; 93.6 0.27 5.9E-06 44.2 7.2 93 261-363 2-108 (144)
5 PF01878 EVE: EVE domain; Int 70.9 12 0.00027 32.5 6.0 97 261-364 1-111 (143)
6 PRK02268 hypothetical protein; 42.2 38 0.00082 30.9 4.2 91 261-363 3-100 (141)
7 PF08683 CAMSAP_CKK: Microtubu 18.0 3.2E+02 0.007 24.4 5.6 56 268-326 12-67 (123)
8 cd05840 SPBC215_ISWI_like The 16.9 1.3E+02 0.0029 25.2 2.8 31 265-300 61-91 (93)
9 KOG0921 Dosage compensation co 16.3 7.8E+02 0.017 29.6 9.3 21 132-153 1197-1217(1282)
10 PF13899 Thioredoxin_7: Thiore 9.7 3.3E+02 0.0073 21.0 3.0 20 292-313 6-25 (82)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=6.4e-67 Score=531.83 Aligned_cols=251 Identities=56% Similarity=0.882 Sum_probs=218.5
Q ss_pred CCCccCccccCCcCcccCCCcccCCCCCCCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCC-CccCccccCCCCCCC
Q 016485 130 AFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKE-NVDGLNELNKGPRAK 208 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~w~~~~~k~~~r~~~~~~~~~~~~-~~d~~~e~~~gpr~~ 208 (388)
..+|.+.++.+.+.||.+..+...+..|+...|.....+|+|..+++..+..+ ........++ ..+.++|+|||||+.
T Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nrg~~s~ 254 (487)
T KOG1901|consen 176 AQGYYDQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWG-INYPRLPSDEAGSDSLNEQNRGPRSS 254 (487)
T ss_pred ccccccccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccc-ccCCCccccccccccccccccCcccc
Confidence 57788888888889999888877788999999999899999999986554333 2222223333 378999999999999
Q ss_pred CCCCCCCCCCceecccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCch
Q 016485 209 GFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNG 288 (388)
Q Consensus 209 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~~f~~~~~~ARFFIIKS~nedNIhkSIKygVWaTTp~n 288 (388)
..+++.........+...+ ......+++++++||+++|+..+.+|||||||||+|||||+||||+|||+|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~s-------~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~G 327 (487)
T KOG1901|consen 255 DSRGQDINSSGPTEAGSAS-------APESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNG 327 (487)
T ss_pred cccCccccCCcchhccccc-------cccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCC
Confidence 9998876555433333211 112225788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCccccccccccceeeeeEEEEecCCCCccccccc
Q 016485 289 NKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL 368 (388)
Q Consensus 289 nkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM~SpVDf~k~~~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N 368 (388)
|||||+||++++++.++||||||||||.||||||+|||++||||++++++|+||||.|.|+|+||+|||||+..|+||++
T Consensus 328 NKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~L 407 (487)
T KOG1901|consen 328 NKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIIL 407 (487)
T ss_pred chhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCcceecCC
Q 016485 369 ENNENKPVTNSRDTQEVIVG 388 (388)
Q Consensus 369 ~~NeNKPVt~sRDGQEIe~~ 388 (388)
++|||||||++||+|||.++
T Consensus 408 eNNeNKPVTnSRDTQEV~le 427 (487)
T KOG1901|consen 408 ENNENKPVTNSRDTQEVPLE 427 (487)
T ss_pred ecCCCCCcccccccceecHH
Confidence 99999999999999999763
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=1.2e-47 Score=335.55 Aligned_cols=124 Identities=48% Similarity=0.892 Sum_probs=103.0
Q ss_pred CceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCccc
Q 016485 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338 (388)
Q Consensus 259 ~ARFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM~SpVDf~k~~~~ 338 (388)
++|||||||++++||++|+++|||+|+++++++|++||+++ ++||||||||+|++|||||+|++++|++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 58999999999999999999999999999999999999998 589999999999999999999999999988899
Q ss_pred cc----cccccceeeeeEEEEecCCCCcccccccCCCCCCCcccCCCcceecCC
Q 016485 339 WQ----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVIVG 388 (388)
Q Consensus 339 Wq----qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~sRDGQEIe~~ 388 (388)
|. ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~ 128 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPE 128 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CC
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHH
Confidence 95 469999999999999999999999999999999999999999999974
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=4.6e-41 Score=330.46 Aligned_cols=134 Identities=37% Similarity=0.611 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEE
Q 016485 246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAE 325 (388)
Q Consensus 246 ~qyN~~~f~~~~~~ARFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~Ae 325 (388)
+++++...+. ..+|||||||.|.+||++|++.|||+||+.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5555555554 699999999999999999999999999999999999999998 68999999999999999999
Q ss_pred eeCCCCCCCCcccccc-----ccccceeeeeEEEEecCCCCcccccccCCCCCCCcccCCCcceecC
Q 016485 326 MVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVIV 387 (388)
Q Consensus 326 M~SpVDf~k~~~~Wqq-----dkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~sRDGQEIe~ 387 (388)
|+|+|...++...|.+ ..|++.|+||||++++|||.++.||+|+|||||||++||||||+++
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep 198 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEP 198 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccCh
Confidence 9999998888767865 6899999999999999999999999999999999999999999986
No 4
>PRK00809 hypothetical protein; Provisional
Probab=93.57 E-value=0.27 Score=44.22 Aligned_cols=93 Identities=16% Similarity=0.272 Sum_probs=61.8
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCCCCC
Q 016485 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFDK 334 (388)
Q Consensus 261 RFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN------~Sg~FqG~AeM~SpVDf~k 334 (388)
+|+|+=+ |+||+.++.++|||-.....-.-|. .- ...-.+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr----~M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIE----KV----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHh----hC----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 5777766 9999999999999999643221111 11 123577788877 5789999999998642222
Q ss_pred Cccccc------cccccceeeeeEEEEec--CCCCcc
Q 016485 335 TVEYWQ------QDKWVGCFPLKWLIIKD--VPNSSL 363 (388)
Q Consensus 335 ~~~~Wq------qdkw~G~F~VeWi~vkd--VPf~~l 363 (388)
+ .+|. .+.+--..+|+++.+.+ ||...|
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L 108 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL 108 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence 1 2231 22333578899998888 776655
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=70.94 E-value=12 Score=32.46 Aligned_cols=97 Identities=16% Similarity=0.332 Sum_probs=51.0
Q ss_pred eEEEEecC----ChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-CCCCeeEEEEeeCCC--CC-
Q 016485 261 KFFIIKSY----SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPV--DF- 332 (388)
Q Consensus 261 RFFIIKS~----nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN-~Sg~FqG~AeM~SpV--Df- 332 (388)
+|+|+|+. +-+++ .-.+..+|.-..+...+- ++++.+ . .--+||+.-. +.+.|.|+|+.++.. |.
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk---~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK---P-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC-----T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC---C-CCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 58999998 66666 444455555433322221 444432 2 3456666656 679999999999764 21
Q ss_pred --CCCcccccccc--ccceeeeeEEEEec--CCCCccc
Q 016485 333 --DKTVEYWQQDK--WVGCFPLKWLIIKD--VPNSSLR 364 (388)
Q Consensus 333 --~k~~~~Wqqdk--w~G~F~VeWi~vkd--VPf~~l~ 364 (388)
+....++.... .....+|+++.+-+ |+...|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk 111 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELK 111 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHh
Confidence 11112122211 23467888886554 4445554
No 6
>PRK02268 hypothetical protein; Provisional
Probab=42.22 E-value=38 Score=30.92 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=55.0
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-------CCCCeeEEEEeeCCCCCC
Q 016485 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-------ASGQFVGVAEMVGPVDFD 333 (388)
Q Consensus 261 RFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN-------~Sg~FqG~AeM~SpVDf~ 333 (388)
+|.|+ .-|+|++.+.++.|+|-.. |+.+ +..+.- + ...-+|++|=. .-+.|.+++++++.--+.
T Consensus 3 ~yWI~-v~s~~hv~~g~~~gf~qv~-hgK~---apl~Rm--k--pGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq 73 (141)
T PRK02268 3 RYWIG-VVSAEHVRRGVEGGFMQVC-HGKA---APLRRM--K--PGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ 73 (141)
T ss_pred ceEEE-EccHHHHHHHHhCCEEEeC-CCcc---chhhcC--C--CCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe
Confidence 45533 5579999999999999774 4332 112221 1 13466677722 357899999998753222
Q ss_pred CCccccccccccceeeeeEEEEecCCCCcc
Q 016485 334 KTVEYWQQDKWVGCFPLKWLIIKDVPNSSL 363 (388)
Q Consensus 334 k~~~~Wqqdkw~G~F~VeWi~vkdVPf~~l 363 (388)
..+. .+-.-=.++|+|+.+.++|+.-|
T Consensus 74 ~~m~---~~f~P~Rr~v~~~~~~e~pi~pL 100 (141)
T PRK02268 74 VEMA---PGFIPWRRDVDYYPCAETPIRPL 100 (141)
T ss_pred cccC---CCceeEEEEeeEeecCccchHHh
Confidence 1110 01111256799999999998654
No 7
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=17.97 E-value=3.2e+02 Score=24.41 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=40.8
Q ss_pred CChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEe
Q 016485 268 YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEM 326 (388)
Q Consensus 268 ~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM 326 (388)
.|..-|+.|+++-+-+ .+.|++..+.|.++. +++...+++++|. ...-+|.|+=.+
T Consensus 12 SNr~iI~nAL~~~~La-G~vN~~~r~~~l~~~-~~s~~~hflILfr-d~~~~fRglY~~ 67 (123)
T PF08683_consen 12 SNRRIIHNALSHCCLA-GPVNEKQRNKALEEM-SKSEANHFLILFR-DAGCQFRGLYSY 67 (123)
T ss_dssp --HHHHHHHHHHTTT--SSTTHHHHHHHHHHH-HHS--S-EEEEES-SSS-SEEEEEEE
T ss_pred ChHHHHHHHHHHhcCC-CccCHHHHHHHHHHH-hhCCCCeEEEEEe-cCCCceEEEEEE
Confidence 3577899999997775 677888888888865 5566678888998 778999999888
No 8
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=16.94 E-value=1.3e+02 Score=25.15 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=25.4
Q ss_pred EecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHH
Q 016485 265 IKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK 300 (388)
Q Consensus 265 IKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreak 300 (388)
|+-+++++|+..++..- ...+.|-+||+.|+
T Consensus 61 l~pl~~~~~~~~l~~~~-----~k~k~l~~ay~~A~ 91 (93)
T cd05840 61 LKPLTEEKIAKFLKKPK-----RKDKELIKAYKAAK 91 (93)
T ss_pred cccCCHHHHHHHhhcCC-----CCCHHHHHHHHHhc
Confidence 67788999999988543 55699999999984
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=16.28 E-value=7.8e+02 Score=29.65 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=9.8
Q ss_pred CccCccccCCcCcccCCCcccC
Q 016485 132 GYMSQMYANNPMYGHYGNTFRA 153 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~g~~~~~ 153 (388)
||...-|- ++-||+.++.++.
T Consensus 1197 gys~gGyg-sGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1197 GYSGGGYG-SGGYGGSAPSARA 1217 (1282)
T ss_pred CCCCCCcC-CCCCCCCCCCCCC
Confidence 34344442 4555555555433
No 10
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=9.73 E-value=3.3e+02 Score=21.04 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEEE
Q 016485 292 LDAAYREAKEKSSDCPVFLLFS 313 (388)
Q Consensus 292 Ln~AFreake~~~~~~V~LfFS 313 (388)
+++|..+|++. +.||+|+|.
T Consensus 6 ~~~al~~A~~~--~kpvlv~f~ 25 (82)
T PF13899_consen 6 YEEALAEAKKE--GKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHHHH--TSEEEEEEE
T ss_pred HHHHHHHHHHc--CCCEEEEEE
Confidence 56777777654 369999995
Done!