Query 016485
Match_columns 388
No_of_seqs 177 out of 354
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 2.3E-51 7.8E-56 360.3 11.4 125 257-388 5-129 (141)
2 2yud_A YTH domain-containing p 100.0 3.7E-51 1.3E-55 371.9 7.4 140 240-387 8-153 (180)
3 2hd9_A UPF0310 protein PH1033; 95.6 0.034 1.1E-06 48.4 7.6 96 261-365 2-109 (145)
4 2p5d_A UPF0310 protein mjecl36 91.6 0.27 9.4E-06 42.7 5.8 96 260-364 4-112 (147)
5 2eve_A Hypothetical protein ps 45.2 84 0.0029 28.0 8.2 97 261-365 2-116 (157)
6 3eop_A Thymocyte nuclear prote 32.7 81 0.0028 28.7 6.2 100 261-366 2-128 (176)
7 3goe_A DNA repair protein RAD6 21.1 76 0.0026 25.7 3.3 44 263-312 12-55 (82)
8 2ar1_A Hypothetical protein; s 17.1 4.3E+02 0.015 23.7 7.8 99 259-364 18-133 (172)
9 2gbs_A Hypothetical protein RP 9.7 3.6E+02 0.012 23.5 4.8 64 261-330 2-70 (145)
10 4f0q_A Restriction endonucleas 9.0 3.6E+02 0.012 27.7 5.2 45 284-328 127-186 (456)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-51 Score=360.34 Aligned_cols=125 Identities=30% Similarity=0.534 Sum_probs=120.3
Q ss_pred CCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCc
Q 016485 257 YSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTV 336 (388)
Q Consensus 257 ~~~ARFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM~SpVDf~k~~ 336 (388)
..++|||||||+++||||+|++||||+||+++|++|++||+++ .+||||||||+||+|||||+|++++|+ ...
T Consensus 5 ~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~ 77 (141)
T 2yu6_A 5 SSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EKS 77 (141)
T ss_dssp CCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CCC
T ss_pred CCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CCC
Confidence 4799999999999999999999999999999999999999998 599999999999999999999999999 556
Q ss_pred cccccccccceeeeeEEEEecCCCCcccccccCCCCCCCcccCCCcceecCC
Q 016485 337 EYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVIVG 388 (388)
Q Consensus 337 ~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~sRDGQEIe~~ 388 (388)
.+|++++|.|.|+|+||+++||||..++||+|++||||||+++||||||+++
T Consensus 78 ~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~ 129 (141)
T 2yu6_A 78 QDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 129 (141)
T ss_dssp CCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTT
T ss_pred ccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHH
Confidence 7799999999999999999999999999999999999999999999999974
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-51 Score=371.89 Aligned_cols=140 Identities=31% Similarity=0.524 Sum_probs=131.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCC
Q 016485 240 PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ 319 (388)
Q Consensus 240 ~~~~~~~qyN~~~f~~~~~~ARFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~ 319 (388)
...+++++||+.+++. +++|||||||++++|||+||+||||+||++||++|++||+++ ++||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 3445789999988885 799999999999999999999999999999999999999998 58999999999999
Q ss_pred eeEEEEeeCCCCCCCCccccc------cccccceeeeeEEEEecCCCCcccccccCCCCCCCcccCCCcceecC
Q 016485 320 FVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVIV 387 (388)
Q Consensus 320 FqG~AeM~SpVDf~k~~~~Wq------qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~sRDGQEIe~ 387 (388)
|||||+|+++++++....+|+ +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~ 153 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIEL 153 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCH
Confidence 999999999999988888896 46799999999999999999999999999999999999999999986
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=95.57 E-value=0.034 Score=48.43 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=63.0
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCC--------CCeeEEEEeeCCCCC
Q 016485 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDF 332 (388)
Q Consensus 261 RFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~S--------g~FqG~AeM~SpVDf 332 (388)
+|.|+|| +.|++...++.|+|-. .+..+..- + . .. ..-.+||++-+.. ..|.|+|+.++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~l---r-~--mk-~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTL---S-R--VK-PGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHH---T-T--CC-TTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHH---H-h--CC-CCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 5899999 8999999999999977 54443222 2 1 11 2356777876655 899999999985422
Q ss_pred CCCc----cccccccccceeeeeEEEEecCCCCcccc
Q 016485 333 DKTV----EYWQQDKWVGCFPLKWLIIKDVPNSSLRH 365 (388)
Q Consensus 333 ~k~~----~~Wqqdkw~G~F~VeWi~vkdVPf~~l~H 365 (388)
+.+. ..|..+..--...|+++.+..||+..+..
T Consensus 73 D~t~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~ 109 (145)
T 2hd9_A 73 DFSRIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN 109 (145)
T ss_dssp CCCCCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG
T ss_pred CCCccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh
Confidence 2211 01222222235678999999999877665
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=91.55 E-value=0.27 Score=42.74 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=59.7
Q ss_pred ceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCC--
Q 016485 260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVD-- 331 (388)
Q Consensus 260 ARFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN------~Sg~FqG~AeM~SpVD-- 331 (388)
.+|.|+|+- ++++...++.|+|-. .+..+..-+ . ... ...+||+... .-..|.|+|++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr----~--Mk~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN----K--VKV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT----T--CCT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH----h--CCC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 469999986 667999999999966 443332222 1 112 3456666332 3458999999998542
Q ss_pred ---CCCCccccccccccceeeeeEEEE--ecCCCCccc
Q 016485 332 ---FDKTVEYWQQDKWVGCFPLKWLII--KDVPNSSLR 364 (388)
Q Consensus 332 ---f~k~~~~Wqqdkw~G~F~VeWi~v--kdVPf~~l~ 364 (388)
|+....+...+..--..+|+++.. ..||+..++
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk 112 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELI 112 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHG
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHH
Confidence 222222221222223788999987 888877666
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=45.20 E-value=84 Score=28.04 Aligned_cols=97 Identities=14% Similarity=0.407 Sum_probs=55.7
Q ss_pred eEEEEec----CChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-CCCCeeEEEEeeCC-----C
Q 016485 261 KFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGP-----V 330 (388)
Q Consensus 261 RFFIIKS----~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN-~Sg~FqG~AeM~Sp-----V 330 (388)
+|.++|| |+-||+.. .+..+|.-.++-..+ -|-.+. .-+ ...||+.-| ......|+|+.+.. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr---N~mr~M--k~G-D~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR---NFLRTM--AEG-DEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH---HHHHHC--CTT-CEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH---HHHHhc--CCC-CEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67788887 555789755542211 111121 123 345555555 88999999999974 3
Q ss_pred CCCCCcccccc------ccccceeeeeEEEE--ecCCCCcccc
Q 016485 331 DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRH 365 (388)
Q Consensus 331 Df~k~~~~Wqq------dkw~G~F~VeWi~v--kdVPf~~l~H 365 (388)
.|+....||.. .+|. .++|+-+.. .-|+...++.
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~ 116 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQ 116 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHT
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhc
Confidence 35556666632 2453 555565543 3444444443
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=32.65 E-value=81 Score=28.69 Aligned_cols=100 Identities=17% Similarity=0.341 Sum_probs=58.4
Q ss_pred eEEEEec-------------CChhhHHHH-hhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEe
Q 016485 261 KFFIIKS-------------YSEDDVHKS-VKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEM 326 (388)
Q Consensus 261 RFFIIKS-------------~nedNIhkS-IKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM 326 (388)
+|.++|| |+.||+... .+...|.=-++-..+-. .++ . .-+..||+.-|-.+.-...|+|++
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~-M--k~GD~~fFYHSnck~pgIvGi~eV 76 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRA-M--KLGEEAFFYHSNCKEPGIAGLMKI 76 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHH-C--CTTCEEEEEECCSSSCEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHh-c--CCCCEEEEEecCCCCCeEEEEEEE
Confidence 4778886 566777765 34567886654322211 121 1 223445554444478899999999
Q ss_pred eCCC-----CCCCCcccccc------ccccceeeeeEEEE--ecCCCCccccc
Q 016485 327 VGPV-----DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLRHI 366 (388)
Q Consensus 327 ~SpV-----Df~k~~~~Wqq------dkw~G~F~VeWi~v--kdVPf~~l~HI 366 (388)
+... .|+...+|+.. .+|. .+.|+-+.. +-|+...++..
T Consensus 77 v~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~ 128 (176)
T 3eop_A 77 VKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSY 128 (176)
T ss_dssp EEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHH
T ss_pred eeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcC
Confidence 9742 35666666642 3564 567776654 34666666654
No 7
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=21.06 E-value=76 Score=25.73 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.9
Q ss_pred EEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEE
Q 016485 263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLF 312 (388)
Q Consensus 263 FIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfF 312 (388)
.+++|.-.+|++.+|+- .....+|-+||++++..+....|.|.|
T Consensus 12 ~~~~~~~~~dl~f~I~~------~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPV------DFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEESSSCCEEEEEET------TSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HhhhccCCCCeEEEecC------CCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 45666666666655443 334689999999999888777899988
No 8
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=17.08 E-value=4.3e+02 Score=23.74 Aligned_cols=99 Identities=27% Similarity=0.428 Sum_probs=56.0
Q ss_pred CceEEEEec----CChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCC----
Q 016485 259 DAKFFIIKS----YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV---- 330 (388)
Q Consensus 259 ~ARFFIIKS----~nedNIhkSIKygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM~SpV---- 330 (388)
.-.|.++|| |+.+|+.. -....|.-.++-..+- -.+ +. .-+..||+.-|-.....+.|+|+++...
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr-~M--k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~ 91 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMR-AM--SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDF 91 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHH-HC--CTTCEEEEEECSSSSCEEEEEEEEEEEEEECG
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHH-hc--CCCCEEEEEecCCCCCEEEEEEEEeeeccCCc
Confidence 346999997 56788877 4446797655432211 112 21 2234455444444889999999999742
Q ss_pred -CCCCCcccccc------ccccceeeeeEEEE--ecCCCCccc
Q 016485 331 -DFDKTVEYWQQ------DKWVGCFPLKWLII--KDVPNSSLR 364 (388)
Q Consensus 331 -Df~k~~~~Wqq------dkw~G~F~VeWi~v--kdVPf~~l~ 364 (388)
.|+....||.. .+|. .++|+-+.. .-|+...++
T Consensus 92 t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK 133 (172)
T 2ar1_A 92 TALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELK 133 (172)
T ss_dssp GGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHT
T ss_pred ccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHh
Confidence 35555666652 2443 555555532 334444443
No 9
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=9.66 E-value=3.6e+02 Score=23.55 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=38.3
Q ss_pred eEEEEec----CChhhHHHHhh-cCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCC
Q 016485 261 KFFIIKS----YSEDDVHKSVK-YNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPV 330 (388)
Q Consensus 261 RFFIIKS----~nedNIhkSIK-ygVWaTTp~nnkKLn~AFreake~~~~~~V~LfFSVN~Sg~FqG~AeM~SpV 330 (388)
+|.++|| |+-||+...-. .-.|.--++-..+ .-.+ +. .-+ .-.||+.-|....+.|+|+.+...
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqAr--n~mr-~M--k~G-D~~ffYHS~~~~gIvGi~eVv~e~ 70 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAK--LHMV-AM--RRG-DRAFYYHSNEGKEIVGIAEIIREA 70 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHH--HHHH-HC--CTT-CEEEEEETTTTCEEEEEEEEEEEE
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHH--HHHH-hc--CCC-CEEEEEEeCCCCceEEEEEEEEec
Confidence 4888887 56677776332 2459755442211 1122 21 123 345566666899999999999864
No 10
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=9.01 E-value=3.6e+02 Score=27.70 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=28.2
Q ss_pred cCCchhHHHHHHHHHHH-----hhCCCCCEEEEEEe--CCCC--------CeeEEEEeeC
Q 016485 284 STPNGNKKLDAAYREAK-----EKSSDCPVFLLFSV--NASG--------QFVGVAEMVG 328 (388)
Q Consensus 284 TTp~nnkKLn~AFreak-----e~~~~~~V~LfFSV--N~Sg--------~FqG~AeM~S 328 (388)
++..+|+.|-++|.... +...-.|||+|..+ +.++ .|+|++.|..
T Consensus 127 ~~~~GN~~Ll~~f~~~~~~~~~~R~~iPPifiF~k~~~~r~~r~v~~g~l~f~G~~~i~~ 186 (456)
T 4f0q_A 127 GETKGNRLLLEAARLHAGTTREERLLAPPLFLFRAVTVHRAGRAVVKGHVEFCGAAIIER 186 (456)
T ss_dssp TCSHHHHHHHHHHHHHTCSSHHHHTTCCCEEEEEECCEEETTEEECSSEEEEEEEEEEEE
T ss_pred CCCchhHHHHHHHHHHhCCChhhhccCCCEEEEEeccccccccceeecceeccCcccccc
Confidence 35667888888776542 11122578877664 3343 4999988875
Done!