BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016486
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic
OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2
Length = 387
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/387 (65%), Positives = 301/387 (77%), Gaps = 12/387 (3%)
Query: 3 AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
AA A+ + +S S NP++ T + SSPR S F + S NV+P
Sbjct: 2 AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIPD 60
Query: 58 KTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLT 117
+ + F+C N LS++ +T YEF+DG E+ELRL+L + EI S KDI VDADGT L
Sbjct: 61 RFNS---FSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLA 116
Query: 118 VRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLT 177
V+ R+G ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLT
Sbjct: 117 VKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLT 176
Query: 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG 237
AG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG
Sbjct: 177 AGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEG 236
Query: 238 SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENS 297
DSV E VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA DE S
Sbjct: 237 PDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEES 296
Query: 298 AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSL 357
AKEEARR ++ ++GYSNADVVVKLQGWD HAKSVAQASLSALKQLI SDK LPGKKSL
Sbjct: 297 AKEEARRSKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSL 356
Query: 358 YIRLGCRGDWPNIKPPGWDPSA--GPN 382
YIRLGCRGDWPNIKPPGWDPS+ GP+
Sbjct: 357 YIRLGCRGDWPNIKPPGWDPSSDTGPH 383
>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=aroK PE=3 SV=1
Length = 190
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +FLVG + LA LGYT + T L+E ++I ++G
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VLE ++S+ R VVAT G G R + W +L G +WL
Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107
>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
GN=aroK PE=3 SV=1
Length = 190
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +FLVG + LA LGYT + T L+E ++I ++G
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VLE ++S+ R VVAT G G R + W +L G +WL
Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107
>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=aroK PE=3 SV=1
Length = 189
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G ++FL+G V LA LGY L+E A + I +G D+ +
Sbjct: 10 LQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGEDTFRD 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E +VL L++ R+V+AT G G R W +L+ G +WL
Sbjct: 70 LETEVLGHLAAQTRSVIATGG---GVVLRRQNWSYLHHGLVIWL 110
>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=aroK PE=3 SV=1
Length = 187
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G +++L+G V ELA L + T L+E +I G +
Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQVGGSSIAQIFAEHGEAYFRD 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL LSS+ R V+AT G G R W +L+ G TVWL
Sbjct: 70 LETQVLAQLSSYTRLVIATGG---GIVLRPKNWSYLHHGLTVWL 110
>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK
PE=3 SV=1
Length = 189
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G +++L+G + ELA L T L+E A +I +G
Sbjct: 10 LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGCSIAQIFAEQGEAHFRE 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL LS + R VVAT G G R W +L+ G TVWL
Sbjct: 70 LETQVLAQLSGYTRLVVATGG---GIVLRPKNWSYLHHGLTVWL 110
>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=aroK PE=3 SV=1
Length = 181
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L T ++ AK++I+ G
Sbjct: 4 LLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E DVL + S+ + VAT G G R + W +L+ G VWL
Sbjct: 64 QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLIVWL 105
>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3
SV=1
Length = 187
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Query: 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD 239
+ +LL+G +I+L+G + LA L Y T L+E +Q+I+ + +G
Sbjct: 3 TQKLLQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILIERVTQQSINDIFVTQGET 62
Query: 240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAK 299
+ E VL +++ R+V+AT GG G + W +L+ G +WL + + +
Sbjct: 63 VFRDIETQVLSEVAACTRSVIAT-GG--GIVLNSQNWSYLHHGLIIWLDVSIKLLKTRLI 119
Query: 300 EEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSAL 341
+ R + +D+ +KL+ D +A L+ +
Sbjct: 120 NDTTRPL------LKESDLTLKLKTLDEQRRNLYNKADLTIV 155
>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=aroK PE=3 SV=1
Length = 181
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L T ++ K++I+ G
Sbjct: 4 LLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATKKSINEIFAEAGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEAMDENSAKEE 301
E DVL + S+ + VAT G G R + W +L+ G +WL + + A +
Sbjct: 64 QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWLDVPVDILYARLAADT 120
Query: 302 ARRHVKD----GKLG---------YSNADVVVKLQGWDADH--AKSVAQASLSALKQ 343
R ++D GKL YS AD+ + + + A V QA S LKQ
Sbjct: 121 TRPLLQDDDPKGKLRSLLEQRTPLYSQADLRICVNAEETPEQIANKVMQAIPSVLKQ 177
>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK2 PE=1 SV=1
Length = 307
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L G I+LVG VA LA LGY+ + +L+E + + E S++
Sbjct: 92 LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL LSS R VVAT G GA R W+++ G +VWL
Sbjct: 152 DNESSVLRDLSSMRRLVVATGG---GAVIRPVNWKYMKKGLSVWL 193
>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1
PE=1 SV=2
Length = 303
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG V ++ LGYT L+E T + + ++
Sbjct: 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR 159
Query: 244 G-ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
G E D L+ LSS + VV+T GG A R W++++ G ++WL
Sbjct: 160 GKETDALKKLSSRYQVVVSTGGG---AVIRPINWKYMHKGISIWL 201
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 85/221 (38%), Gaps = 36/221 (16%)
Query: 168 DIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227
D +E+ ++ + L G ++LVG V LA LGY+ L+E Q
Sbjct: 86 DEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIE----Q 141
Query: 228 TIDSWMLAE-----GSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAG 282
+ +AE G + E +VL LS R VV+T GG A R W+H++ G
Sbjct: 142 AVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGG---AVVRPINWRHMHKG 198
Query: 283 FTVWLS----------QTEAMDENSAKEEARRHVKDGKL------------GYSNADVVV 320
+VWL TE E V D L Y+NA V
Sbjct: 199 ISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARV 258
Query: 321 KLQGWDADHAKSVAQASLS--ALKQLIQSDKKLPGKKSLYI 359
L+ K V + + L+ LIQ + L +KS+ +
Sbjct: 259 SLENIALKREKDVCHITPAEITLEVLIQIENFLKTQKSVVV 299
>sp|Q7NH27|AROK_GLOVI Shikimate kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=aroK
PE=3 SV=1
Length = 177
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
+LKG S++LVG V LA LGY + L+E + + + EG
Sbjct: 1 MLKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALIEQVSGKRVGEIFEREGEAVFR 60
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL +S++ R VVAT GG AR + W +L+ G VWL
Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGV--VLARRN-WGYLHHGVVVWL 102
>sp|B2IX35|AROK_NOSP7 Shikimate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=aroK PE=3 SV=1
Length = 181
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L ++ ++I+ EG
Sbjct: 4 LLQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKATDKSINQLFAEEGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEAMDENSAKEE 301
E DVL + + + +AT G G R + W +L+ G VWL E + A++
Sbjct: 64 QIESDVLSQVCAFTKLTIATGG---GIVLRRENWGYLHHGLIVWLDVPVELIYRRLAEDT 120
Query: 302 ARRHVKD----GKLG---------YSNADVVVKLQ 323
R ++D GKL YS AD+ + +Q
Sbjct: 121 TRPLLQDADLKGKLRSLLEQRTPLYSQADLHITVQ 155
>sp|Q7VE85|AROK_PROMA Shikimate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375
/ SS120) GN=aroK PE=3 SV=1
Length = 190
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G I+LVG LA L Y+ + EL+E AK ++ EG + +
Sbjct: 14 LGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELIEKVAKSSVSQIFREEGENGFRD 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL+ + VVAT G G R++ W L+ G +WL
Sbjct: 74 IETQVLKQIGQRHSLVVATGG---GLVTRSENWGVLHQGIVIWL 114
>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2
PE=1 SV=1
Length = 300
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG V +A LGYT L+E K T + + +SV
Sbjct: 96 LNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFR 155
Query: 244 -GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E + L+ LS VV + GG GA R W++++ G ++WL
Sbjct: 156 EKETEALKKLSLMYHQVVVSTGG--GAVIRPINWKYMHKGISIWL 198
>sp|Q46HR4|AROK_PROMT Shikimate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=aroK
PE=3 SV=1
Length = 198
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +IFL+G + LA + Y + T +++E +KQ+I S +G +
Sbjct: 14 LGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDDVIEKASKQSISSIFEKDGEKVFRD 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL+ +S H V+AT G G + W L+ G +WL
Sbjct: 74 VEKKVLKEISQHHSLVIATGG---GLVTLPENWGILHQGIVIWL 114
>sp|A2C650|AROK_PROM3 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=aroK PE=3 SV=1
Length = 192
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G +++LVG LA L Y + T ++E A Q I EG +
Sbjct: 12 QRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQLAGQPIPKIFNEEGEEGF 71
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEE 301
E VL ++ VVAT GG ++ + W L+ G +WL N +EE
Sbjct: 72 RAMESQVLNAIGQRHSLVVATGGGM---VSKPENWGILHQGIVIWL--------NPGREE 120
Query: 302 ARRHV 306
R +
Sbjct: 121 LFRRL 125
>sp|Q3B009|AROK_SYNS9 Shikimate kinase OS=Synechococcus sp. (strain CC9902) GN=aroK PE=3
SV=1
Length = 191
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G SI+L+G LA LGY + ++E A TI +G +
Sbjct: 12 LSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADAVIEQVAGCTIPEIFERDGEAGFRS 71
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
E VL ++S VVAT G G + + W L++G VWL A
Sbjct: 72 IESQVLNAISQRHSLVVATGG---GVVTKPENWGQLHSGIVVWLDVNRA 117
>sp|Q7V904|AROK_PROMM Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=aroK PE=3 SV=1
Length = 192
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G +++LVG LA L Y + T ++E A Q I EG
Sbjct: 12 QRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQLAGQPIPKIFSEEGEAGF 71
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEE 301
E VL ++ VVAT G G ++ + W L+ G +WL N +EE
Sbjct: 72 RTMESQVLNAIGQRHSLVVATGG---GIVSKPENWGVLHQGIVIWL--------NPGREE 120
Query: 302 ARRHV 306
R +
Sbjct: 121 LLRRL 125
>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843)
GN=aroK PE=3 SV=1
Length = 190
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G S+FL+G + L+ L Y T L+E A + I + EG +
Sbjct: 10 LRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILIERVAGKKIREIFVDEGEATFRE 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL LSS + V+AT GG G + W +L G +WL
Sbjct: 70 LETQVLAELSSLTKTVIAT-GG--GMVLKPMNWSYLRHGLMIWL 110
>sp|Q8DKH7|AROK_THEEB Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1)
GN=aroK PE=3 SV=1
Length = 183
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +I+LVG LA LGY+ + T ++ F ++ I EG +
Sbjct: 7 LGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVITAFRQRPIREIFAQEGEPAFRE 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL +SS+ VVAT GG G W +L+ G VWL
Sbjct: 67 LEQQVLAQVSSYHHLVVAT-GG--GIVLNPMNWSYLHHGIVVWL 107
>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK1 PE=1 SV=1
Length = 308
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L G I+LVG V ++ LGY+ + +L+E + + S++
Sbjct: 94 LNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFR 153
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL LSS R VVAT G GA R W+++ G +VWL
Sbjct: 154 DNESSVLRDLSSMKRLVVATGG---GAVIRPVNWKYMKKGLSVWL 195
>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic
OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
Length = 280
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
LKG SIFLVG + + LA L Y + L+ A + + L E +
Sbjct: 87 LKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQ 146
Query: 244 -GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVW----LSQTEAMDENSA 298
E +VL+ LSS R VV GA L G ++W L T D++S
Sbjct: 147 ESETEVLKQLSSMGRLVVC---AGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSF 203
Query: 299 KEEARRHVKD--------GKLGYSNADVVVKLQ 323
E + D + GY ADV + L+
Sbjct: 204 HSEPSPELFDTLKASYEKSRKGYETADVSISLE 236
>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3
SV=1
Length = 195
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+GT+++LVG V LA LGY L ++ A +I +G +
Sbjct: 14 LQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAAGCSIPEIFERDGEEGFRQ 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL--SQTEAMDENSAKEE 301
E VL+ LS VVAT GG A W L G +WL ++ E M A
Sbjct: 74 LERQVLQQLSQWHSLVVATGGGIVTVPA---NWGELRQGVVIWLDVAEEELMRRLQADPG 130
Query: 302 ARRHVKD----GKLG---------YSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS 347
R + G+L Y AD+ V QG + A +++ L L L+++
Sbjct: 131 GRPLLAGDDPAGRLHGLLEKRQPLYGQADLRVSAQG---EGASDISERILQQLPGLLKA 186
>sp|Q3AH55|AROK_SYNSC Shikimate kinase OS=Synechococcus sp. (strain CC9605) GN=aroK PE=3
SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG LA LGY + ++E A +I +G +
Sbjct: 20 LSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADAVIEQAAGCSIPEIFERDGDAGFRS 79
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL ++S VVAT G G + + W L++G +WL
Sbjct: 80 LESQVLSAISQRHSLVVATGG---GVVTQPENWGLLHSGIVIWL 120
>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK3 PE=1 SV=2
Length = 287
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L I+LVG V LA LGY+ + +L+E + + + S++
Sbjct: 89 LNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFR 148
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E +VL LSS R VVAT G GA R W ++ G T+WL
Sbjct: 149 DNESEVLRDLSSMHRLVVATGG---GAVIRPINWSYMKKGSTIWL 190
>sp|A9BCW6|AROK_PROM4 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9211)
GN=aroK PE=3 SV=1
Length = 197
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +++LVG + LA L Y + +++E Q+I EG
Sbjct: 14 LGGRNLYLVGMMGSGKSRTGPVLAKKLSYGFVDVDDVIEKVTNQSISEIFDQEGEIGFRE 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E +L+ + VVAT G G R + W L+ G +W+
Sbjct: 74 IETQILQEIGQRHSLVVATGG---GIVTRPENWGILHQGVVIWI 114
>sp|Q7U469|AROK_SYNPX Shikimate kinase OS=Synechococcus sp. (strain WH8102) GN=aroK PE=3
SV=1
Length = 191
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G S++LVG LA LGY + ++E A +I +G
Sbjct: 10 QRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADAVIEQAAGCSIPEIFERDGEAGF 69
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL ++ VVAT G G + + W L++G VWL
Sbjct: 70 RALESQVLNAIGQRHSLVVATGG---GVVTQQENWGLLHSGIVVWL 112
>sp|Q72DN7|AROK_DESVH Shikimate kinase OS=Desulfovibrio vulgaris (strain Hildenborough /
ATCC 29579 / NCIMB 8303) GN=aroK PE=3 SV=1
Length = 175
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248
+FL+G V LA LG+ T ++ A I + + G D+ + E D
Sbjct: 8 VFLIGGRASGKSTVGRALAARLGWDFADTDAMVTRRAGCDIATLVAERGWDAFRDMESDA 67
Query: 249 LESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLS 288
L ++ R VVAT GG RA+ L AG TV+LS
Sbjct: 68 LRDAAARERVVVATGGGM---VLRAENRALLREAGVTVFLS 105
>sp|Q19825|SYRC_CAEEL Probable arginine--tRNA ligase, cytoplasmic OS=Caenorhabditis
elegans GN=rrt-1 PE=2 SV=2
Length = 713
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 168 DIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227
D VE + + AG + +IFL D + +++L + G+ L+ K +L F+
Sbjct: 202 DFVEKIDVMPAGFI------NIFLNTDY--LRRQISLLASEGVKLPKLTRKRVLVDFSSP 253
Query: 228 TIDSWMLAEGSDSVVNGE--CDVLESLSSHVRAV--VATLGGQQGAAARADKWQHLYAGF 283
I M S + G+ C + E++ V V + G Q G HLY F
Sbjct: 254 NIAKEMHVGHLRSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLI-----AHLYDRF 308
Query: 284 TVWLSQTEAMDENSA--KEEARRHVKDGKLGYSNADVVVKLQGWDADHAKS 332
+L + + + A KE +R +D + + VVKLQ D D K+
Sbjct: 309 PDFLKKLPDISDLQAFYKESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKA 359
>sp|C3LS25|MUTS_VIBCM DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1
(strain M66-2) GN=mutS PE=3 SV=1
Length = 862
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 246 CDVLESLSSHVRAVVATLGG--QQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEAR 303
CD+LE VV GG G +A D+W+ L G T +L + EA EE
Sbjct: 411 CDLLERAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEA-------EERD 463
Query: 304 RHVKDG-KLGYSN 315
RH D K+GY+N
Sbjct: 464 RHGIDTLKVGYNN 476
>sp|Q9KUI6|MUTS_VIBCH DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=mutS PE=3
SV=1
Length = 862
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 246 CDVLESLSSHVRAVVATLGG--QQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEAR 303
CD+LE VV GG G +A D+W+ L G T +L + EA EE
Sbjct: 411 CDLLERAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEA-------EERD 463
Query: 304 RHVKDG-KLGYSN 315
RH D K+GY+N
Sbjct: 464 RHGIDTLKVGYNN 476
>sp|A5F9C4|MUTS_VIBC3 DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=mutS PE=3 SV=1
Length = 862
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 246 CDVLESLSSHVRAVVATLGG--QQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEAR 303
CD+LE VV GG G +A D+W+ L G T +L + EA EE
Sbjct: 411 CDLLERAIKENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEA-------EERD 463
Query: 304 RHVKDG-KLGYSN 315
RH D K+GY+N
Sbjct: 464 RHGIDTLKVGYNN 476
>sp|Q7VFD7|HTPG_HELHP Chaperone protein HtpG OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=htpG PE=3 SV=1
Length = 618
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 199 NEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN---GECDVLESLSSH 255
NE+ ++ +G L LLE FA++ D +L++ D++V GE D + S +
Sbjct: 424 NEQKSIYYMLGENKDALKNAPLLEKFAQKGFDVLLLSDEIDAIVMPMVGEYDKVPLKSIN 483
Query: 256 VRAVVATLGGQQGAAARADKWQHLYAGF 283
+ +A LG + A + ++ L GF
Sbjct: 484 SKEALAELGEESIDEATQNAYEPLIKGF 511
>sp|Q9NA80|SIN1_CAEEL Stress-activated map kinase-interacting protein 1 homolog
OS=Caenorhabditis elegans GN=sinh-1 PE=3 SV=3
Length = 642
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 24/147 (16%)
Query: 30 SSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSL--------SSIPANTSQY 81
+ P + I P+ + T + + T R R L S +P Y
Sbjct: 158 TDPSRQIEIIIPMSCDEEIGFKTLKIEVLTTARIREVIGYCLLQYYLTFDSYLPGEVDDY 217
Query: 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTV--RVNRSGSFITLIETNQLFDKI 139
+F + E+ +L L+ S + TCL + R+ ++G+ +
Sbjct: 218 QFYLAEEDGEIEHELPPLD---SSKLVGQVGFTCLGLVSRIKKNGN-----------SRQ 263
Query: 140 KPTETIWYIDEDQLVINLKKQDPELKW 166
K +W++D+DQ VI + + L+W
Sbjct: 264 KRAVAVWFVDKDQYVIEVDNMEKPLRW 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,242,445
Number of Sequences: 539616
Number of extensions: 5353669
Number of successful extensions: 11596
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 11550
Number of HSP's gapped (non-prelim): 47
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)