Query 016486
Match_columns 388
No_of_seqs 266 out of 1419
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0703 AroK Shikimate kinase 100.0 1.1E-36 2.4E-41 277.6 16.1 153 186-345 2-170 (172)
2 PLN02199 shikimate kinase 100.0 6E-35 1.3E-39 286.0 17.7 202 113-351 60-296 (303)
3 PRK13948 shikimate kinase; Pro 100.0 4.4E-32 9.5E-37 249.2 17.0 157 183-345 7-177 (182)
4 PRK14021 bifunctional shikimat 100.0 2.8E-30 6E-35 271.3 14.7 181 185-371 5-205 (542)
5 PRK13949 shikimate kinase; Pro 100.0 3E-29 6.4E-34 226.7 14.9 149 187-341 2-169 (169)
6 PF01202 SKI: Shikimate kinase 100.0 2.7E-29 5.9E-34 223.3 11.5 142 195-342 1-158 (158)
7 PRK05057 aroK shikimate kinase 100.0 5.8E-28 1.3E-32 218.4 16.5 153 185-343 3-171 (172)
8 PRK13946 shikimate kinase; Pro 100.0 7.5E-28 1.6E-32 219.0 17.1 163 181-349 5-182 (184)
9 PRK00625 shikimate kinase; Pro 100.0 7.1E-28 1.5E-32 219.5 17.0 151 187-341 1-171 (173)
10 PRK13947 shikimate kinase; Pro 99.9 1.4E-26 3E-31 205.4 16.1 146 188-339 3-163 (171)
11 PRK00131 aroK shikimate kinase 99.9 1.2E-24 2.5E-29 191.3 16.6 156 184-345 2-173 (175)
12 PRK03731 aroL shikimate kinase 99.9 1.1E-24 2.5E-29 193.8 15.5 149 187-343 3-170 (171)
13 PRK08154 anaerobic benzoate ca 99.9 8.6E-24 1.9E-28 207.8 18.0 155 185-345 132-303 (309)
14 PRK13951 bifunctional shikimat 99.9 1.1E-23 2.4E-28 219.3 17.2 172 187-367 1-184 (488)
15 cd00464 SK Shikimate kinase (S 99.9 1.5E-22 3.3E-27 175.4 14.7 138 188-328 1-153 (154)
16 PRK09169 hypothetical protein; 99.9 2.7E-23 5.9E-28 238.5 9.8 278 27-327 1947-2268(2316)
17 COG3265 GntK Gluconate kinase 99.7 4.7E-16 1E-20 139.5 10.1 134 192-343 1-159 (161)
18 PRK10078 ribose 1,5-bisphospho 99.6 5.2E-16 1.1E-20 141.1 9.0 154 186-347 2-180 (186)
19 PRK03839 putative kinase; Prov 99.6 1.2E-15 2.6E-20 137.3 11.2 140 187-344 1-154 (180)
20 PRK05541 adenylylsulfate kinas 99.6 8.2E-16 1.8E-20 137.9 9.1 147 184-344 5-173 (176)
21 PRK04182 cytidylate kinase; Pr 99.6 5.1E-15 1.1E-19 131.1 13.4 148 187-347 1-177 (180)
22 KOG3354 Gluconate kinase [Carb 99.6 3.1E-15 6.7E-20 135.4 12.0 137 187-343 13-188 (191)
23 PRK14532 adenylate kinase; Pro 99.6 1.8E-14 3.8E-19 130.4 10.9 146 187-342 1-186 (188)
24 PRK05537 bifunctional sulfate 99.5 8.4E-15 1.8E-19 155.5 7.3 165 163-343 365-562 (568)
25 COG1102 Cmk Cytidylate kinase 99.5 1.6E-13 3.5E-18 124.9 13.6 146 187-347 1-176 (179)
26 PRK13975 thymidylate kinase; P 99.5 5.7E-14 1.2E-18 127.2 7.7 148 186-345 2-192 (196)
27 PRK14530 adenylate kinase; Pro 99.5 1.3E-12 2.8E-17 121.5 14.3 103 185-293 2-118 (215)
28 TIGR01313 therm_gnt_kin carboh 99.4 1.7E-12 3.8E-17 114.7 12.4 140 189-341 1-161 (163)
29 PRK03846 adenylylsulfate kinas 99.4 8.4E-13 1.8E-17 121.4 9.0 151 185-343 23-192 (198)
30 PRK00889 adenylylsulfate kinas 99.4 4.2E-12 9E-17 113.8 12.2 147 185-343 3-170 (175)
31 PRK06762 hypothetical protein; 99.3 1.3E-11 2.9E-16 109.3 12.0 142 186-342 2-163 (166)
32 PRK06217 hypothetical protein; 99.3 1.9E-11 4E-16 111.0 12.8 94 187-293 2-96 (183)
33 TIGR02173 cyt_kin_arch cytidyl 99.3 3.1E-11 6.8E-16 106.3 13.6 142 187-341 1-170 (171)
34 TIGR02322 phosphon_PhnN phosph 99.3 1.9E-11 4.1E-16 109.6 11.2 144 186-342 1-177 (179)
35 PRK01184 hypothetical protein; 99.3 8.7E-11 1.9E-15 105.9 15.2 148 187-345 2-180 (184)
36 TIGR03575 selen_PSTK_euk L-ser 99.3 3.5E-12 7.6E-17 128.1 4.3 91 189-293 2-114 (340)
37 PRK11860 bifunctional 3-phosph 99.2 3.1E-11 6.8E-16 130.2 10.3 185 145-343 388-655 (661)
38 TIGR01360 aden_kin_iso1 adenyl 99.2 2.2E-10 4.7E-15 102.4 13.7 148 186-343 3-187 (188)
39 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 2.4E-10 5.2E-15 102.5 13.7 145 189-341 2-182 (183)
40 PTZ00322 6-phosphofructo-2-kin 99.2 4.2E-12 9.1E-17 137.0 2.5 133 183-319 212-379 (664)
41 TIGR03574 selen_PSTK L-seryl-t 99.2 1.1E-10 2.5E-15 110.7 12.0 146 189-343 2-169 (249)
42 PRK13477 bifunctional pantoate 99.2 2.9E-11 6.4E-16 127.2 6.8 147 185-343 283-503 (512)
43 PRK13808 adenylate kinase; Pro 99.2 5.5E-10 1.2E-14 112.1 15.5 155 187-350 1-200 (333)
44 PRK02496 adk adenylate kinase; 99.2 4.6E-10 1E-14 101.4 13.6 150 187-341 2-182 (184)
45 PLN02674 adenylate kinase 99.2 7.1E-10 1.5E-14 106.9 15.2 104 184-293 29-150 (244)
46 PRK14531 adenylate kinase; Pro 99.1 1.1E-09 2.3E-14 99.7 13.9 39 186-224 2-40 (183)
47 PRK06547 hypothetical protein; 99.1 9.5E-11 2.1E-15 106.9 7.0 105 185-293 14-130 (172)
48 cd02021 GntK Gluconate kinase 99.1 4.9E-10 1.1E-14 97.5 10.7 108 189-310 2-119 (150)
49 cd00227 CPT Chloramphenicol (C 99.1 1.3E-09 2.7E-14 98.2 12.8 142 185-341 1-174 (175)
50 PRK00279 adk adenylate kinase; 99.1 1.9E-09 4.1E-14 100.3 13.7 100 187-293 1-119 (215)
51 TIGR00455 apsK adenylylsulfate 99.1 6.8E-10 1.5E-14 100.5 10.3 147 184-341 16-184 (184)
52 PRK08233 hypothetical protein; 99.1 1.1E-09 2.5E-14 97.3 11.6 148 185-343 2-177 (182)
53 PRK09825 idnK D-gluconate kina 99.0 1.2E-08 2.7E-13 93.1 15.9 153 184-346 1-171 (176)
54 PRK14733 coaE dephospho-CoA ki 99.0 4.4E-09 9.6E-14 98.9 13.2 148 186-342 6-197 (204)
55 cd02020 CMPK Cytidine monophos 99.0 1.5E-09 3.4E-14 92.8 9.0 92 189-293 2-95 (147)
56 PRK11545 gntK gluconate kinase 99.0 4.9E-09 1.1E-13 94.3 12.2 96 192-293 1-103 (163)
57 TIGR01351 adk adenylate kinase 99.0 9E-09 1.9E-13 95.4 14.0 38 188-225 1-38 (210)
58 PRK05506 bifunctional sulfate 99.0 1.1E-09 2.3E-14 117.7 8.2 150 185-343 459-628 (632)
59 PRK08356 hypothetical protein; 99.0 1.2E-08 2.5E-13 93.8 13.8 143 187-344 6-193 (195)
60 PRK14527 adenylate kinase; Pro 99.0 1.7E-08 3.8E-13 92.1 14.7 41 185-225 5-45 (191)
61 PLN02200 adenylate kinase fami 99.0 1.2E-08 2.6E-13 97.3 14.2 153 186-346 43-227 (234)
62 PRK00081 coaE dephospho-CoA ki 99.0 1.1E-08 2.5E-13 94.2 13.2 145 187-343 3-193 (194)
63 PF01583 APS_kinase: Adenylyls 98.9 2.3E-09 4.9E-14 97.1 7.7 103 185-293 1-112 (156)
64 PF13207 AAA_17: AAA domain; P 98.9 1.5E-09 3.2E-14 90.7 6.0 34 188-221 1-34 (121)
65 PHA02530 pseT polynucleotide k 98.9 1.1E-08 2.3E-13 99.0 12.2 104 187-293 3-115 (300)
66 COG0529 CysC Adenylylsulfate k 98.9 7.5E-09 1.6E-13 96.0 10.5 148 184-344 21-192 (197)
67 PRK08118 topology modulation p 98.9 3E-09 6.4E-14 96.2 7.8 88 187-292 2-90 (167)
68 PRK00023 cmk cytidylate kinase 98.9 1.9E-08 4.1E-13 95.3 13.5 39 185-223 3-41 (225)
69 PF13671 AAA_33: AAA domain; P 98.9 3.7E-09 8.1E-14 90.4 7.5 111 188-312 1-121 (143)
70 TIGR00152 dephospho-CoA kinase 98.9 1.8E-08 3.8E-13 91.8 12.3 137 189-337 2-186 (188)
71 PRK14528 adenylate kinase; Pro 98.9 3.8E-08 8.3E-13 90.2 14.3 39 187-225 2-40 (186)
72 cd01428 ADK Adenylate kinase ( 98.9 1.3E-08 2.9E-13 91.5 11.1 38 188-225 1-38 (194)
73 PRK03333 coaE dephospho-CoA ki 98.9 3.1E-09 6.6E-14 108.6 7.8 148 188-346 3-195 (395)
74 PRK14526 adenylate kinase; Pro 98.9 3.3E-08 7.2E-13 93.1 14.1 48 187-234 1-54 (211)
75 PTZ00088 adenylate kinase 1; P 98.9 1.2E-08 2.6E-13 97.3 11.3 102 185-292 5-121 (229)
76 PRK05416 glmZ(sRNA)-inactivati 98.9 2E-08 4.3E-13 99.0 12.2 132 186-343 6-160 (288)
77 PRK04040 adenylate kinase; Pro 98.8 9.2E-08 2E-12 88.4 14.5 40 186-225 2-43 (188)
78 PRK14730 coaE dephospho-CoA ki 98.8 9.9E-08 2.1E-12 88.5 14.1 40 187-226 2-41 (195)
79 PLN02422 dephospho-CoA kinase 98.8 1.1E-07 2.4E-12 91.2 14.5 146 188-345 3-196 (232)
80 PRK14734 coaE dephospho-CoA ki 98.8 1.3E-07 2.8E-12 88.0 14.1 37 188-225 3-39 (200)
81 PLN02165 adenylate isopentenyl 98.8 1.7E-08 3.7E-13 101.4 8.7 83 183-265 40-142 (334)
82 cd02022 DPCK Dephospho-coenzym 98.8 5.3E-08 1.1E-12 88.4 11.1 37 189-226 2-38 (179)
83 PLN02459 probable adenylate ki 98.8 1.2E-07 2.6E-12 92.5 14.0 40 186-225 29-68 (261)
84 PRK13973 thymidylate kinase; P 98.8 2.1E-07 4.6E-12 86.9 14.5 157 184-346 1-209 (213)
85 TIGR00017 cmk cytidylate kinas 98.7 1.1E-07 2.5E-12 89.8 12.3 38 187-224 3-40 (217)
86 cd01672 TMPK Thymidine monopho 98.7 1E-07 2.2E-12 85.1 11.3 31 187-217 1-34 (200)
87 COG0283 Cmk Cytidylate kinase 98.7 2.4E-07 5.2E-12 88.1 13.8 38 187-224 5-42 (222)
88 PRK05480 uridine/cytidine kina 98.7 3.1E-07 6.6E-12 84.8 13.5 38 185-222 5-45 (209)
89 cd02023 UMPK Uridine monophosp 98.7 2.9E-07 6.3E-12 84.1 12.5 35 189-223 2-39 (198)
90 PRK14529 adenylate kinase; Pro 98.6 5.5E-07 1.2E-11 85.9 13.9 101 187-293 1-118 (223)
91 PRK09518 bifunctional cytidyla 98.6 1.3E-07 2.9E-12 103.1 10.9 37 188-224 3-39 (712)
92 PRK07261 topology modulation p 98.6 1.2E-07 2.7E-12 85.8 8.3 89 187-292 1-90 (171)
93 PTZ00451 dephospho-CoA kinase; 98.6 8.9E-07 1.9E-11 85.5 14.6 39 188-226 3-41 (244)
94 PRK14732 coaE dephospho-CoA ki 98.6 8.3E-07 1.8E-11 82.6 13.1 146 189-346 2-193 (196)
95 PRK14731 coaE dephospho-CoA ki 98.6 1.7E-06 3.7E-11 80.7 14.8 38 187-225 6-43 (208)
96 PLN02842 nucleotide kinase 98.6 7.3E-07 1.6E-11 94.0 13.2 153 190-351 1-210 (505)
97 TIGR00041 DTMP_kinase thymidyl 98.6 5.5E-07 1.2E-11 81.5 10.7 27 185-211 2-28 (195)
98 COG0563 Adk Adenylate kinase a 98.5 1E-06 2.2E-11 81.2 11.9 39 187-225 1-39 (178)
99 PRK00698 tmk thymidylate kinas 98.5 1.3E-06 2.7E-11 79.3 12.3 26 185-210 2-27 (205)
100 cd02027 APSK Adenosine 5'-phos 98.5 4.8E-07 1E-11 80.2 8.2 96 189-292 2-108 (149)
101 COG1936 Predicted nucleotide k 98.5 1.1E-06 2.3E-11 81.3 10.5 136 187-343 1-156 (180)
102 COG0237 CoaE Dephospho-CoA kin 98.5 9.2E-07 2E-11 83.2 10.3 38 187-225 3-40 (201)
103 PRK13974 thymidylate kinase; P 98.5 2.2E-06 4.7E-11 80.1 12.3 27 185-211 2-28 (212)
104 PF07931 CPT: Chloramphenicol 98.4 3.6E-06 7.9E-11 77.5 13.2 142 186-342 1-174 (174)
105 cd02030 NDUO42 NADH:Ubiquinone 98.4 4.1E-06 8.9E-11 78.6 13.3 27 189-215 2-28 (219)
106 PRK12339 2-phosphoglycerate ki 98.4 3.6E-06 7.8E-11 78.7 12.7 41 185-225 2-43 (197)
107 TIGR00235 udk uridine kinase. 98.4 6.6E-06 1.4E-10 76.2 13.9 37 185-221 5-44 (207)
108 PRK00300 gmk guanylate kinase; 98.4 2.8E-06 6.1E-11 77.6 11.3 27 185-211 4-30 (205)
109 PF01121 CoaE: Dephospho-CoA k 98.4 1.6E-06 3.4E-11 80.0 9.3 38 188-226 2-39 (180)
110 PRK09270 nucleoside triphospha 98.4 3E-06 6.4E-11 79.9 10.9 134 185-325 32-223 (229)
111 PF13189 Cytidylate_kin2: Cyti 98.4 1.4E-06 3.1E-11 79.5 8.4 98 188-293 1-126 (179)
112 KOG0635 Adenosine 5'-phosphosu 98.3 4.2E-06 9E-11 76.5 10.5 151 184-343 29-200 (207)
113 PF00406 ADK: Adenylate kinase 98.3 2.2E-06 4.8E-11 75.2 8.5 35 191-225 1-35 (151)
114 COG0125 Tmk Thymidylate kinase 98.3 5.9E-06 1.3E-10 78.2 11.5 28 184-211 1-28 (208)
115 KOG3347 Predicted nucleotide k 98.3 1.3E-05 2.7E-10 73.1 12.8 146 184-344 5-170 (176)
116 TIGR03263 guanyl_kin guanylate 98.3 5.2E-06 1.1E-10 74.3 10.1 26 186-211 1-26 (180)
117 PRK13976 thymidylate kinase; P 98.3 3.6E-05 7.9E-10 72.4 16.0 24 188-211 2-25 (209)
118 COG2019 AdkA Archaeal adenylat 98.3 2E-05 4.4E-10 72.8 13.3 151 187-343 5-188 (189)
119 PRK12269 bifunctional cytidyla 98.2 1.3E-05 2.7E-10 89.6 13.9 41 185-225 33-73 (863)
120 PRK14737 gmk guanylate kinase; 98.2 9.3E-06 2E-10 75.0 10.8 26 185-210 3-28 (186)
121 PRK14738 gmk guanylate kinase; 98.2 1.3E-05 2.8E-10 74.6 11.8 25 185-209 12-36 (206)
122 smart00072 GuKc Guanylate kina 98.2 1.3E-05 2.9E-10 73.0 10.6 25 186-210 2-26 (184)
123 PLN02924 thymidylate kinase 98.2 9.7E-06 2.1E-10 76.9 9.9 31 182-212 12-42 (220)
124 COG0194 Gmk Guanylate kinase [ 98.2 1.7E-05 3.7E-10 74.1 11.2 148 185-343 3-182 (191)
125 TIGR00390 hslU ATP-dependent p 98.2 1.7E-06 3.7E-11 89.6 4.8 63 183-245 44-109 (441)
126 PRK06696 uridine kinase; Valid 98.2 1.7E-05 3.7E-10 74.4 11.0 37 185-221 21-62 (223)
127 PRK12338 hypothetical protein; 98.1 3.3E-05 7.1E-10 77.6 13.3 42 185-226 3-45 (319)
128 cd06468 p23_CacyBP p23_like do 98.1 1.9E-06 4.2E-11 70.0 3.4 90 79-169 2-91 (92)
129 KOG3079 Uridylate kinase/adeny 98.1 4.9E-05 1.1E-09 71.1 12.7 151 185-343 7-193 (195)
130 PRK07667 uridine kinase; Provi 98.1 2.4E-05 5.2E-10 72.1 10.4 38 187-224 18-60 (193)
131 COG0572 Udk Uridine kinase [Nu 98.1 8.1E-05 1.8E-09 71.1 13.8 129 187-326 9-193 (218)
132 PF00625 Guanylate_kin: Guanyl 98.1 1.5E-05 3.3E-10 72.3 8.4 27 185-211 1-27 (183)
133 cd06494 p23_NUDCD2_like p23-li 98.0 2.5E-06 5.4E-11 71.1 2.6 82 74-162 1-83 (93)
134 PF13238 AAA_18: AAA domain; P 98.0 1.1E-05 2.4E-10 67.0 5.8 22 189-210 1-22 (129)
135 PRK06761 hypothetical protein; 98.0 1.5E-05 3.3E-10 78.7 7.4 117 186-315 3-133 (282)
136 COG0645 Predicted kinase [Gene 98.0 4.6E-05 9.9E-10 70.2 9.9 101 187-293 2-116 (170)
137 PF00485 PRK: Phosphoribulokin 98.0 2.7E-05 5.8E-10 71.4 8.3 33 189-221 2-43 (194)
138 TIGR01663 PNK-3'Pase polynucle 97.9 5E-05 1.1E-09 80.8 10.3 36 185-220 368-403 (526)
139 PTZ00301 uridine kinase; Provi 97.9 0.00015 3.3E-09 68.4 12.5 38 185-222 2-46 (210)
140 PLN02840 tRNA dimethylallyltra 97.9 2.9E-05 6.3E-10 80.5 7.3 84 182-265 17-119 (421)
141 PLN02348 phosphoribulokinase 97.9 4.8E-05 1E-09 78.3 8.7 36 186-221 49-104 (395)
142 PRK00091 miaA tRNA delta(2)-is 97.9 5.1E-05 1.1E-09 75.7 8.5 81 185-265 3-102 (307)
143 cd02026 PRK Phosphoribulokinas 97.8 7.5E-05 1.6E-09 73.1 9.3 33 189-221 2-37 (273)
144 COG1428 Deoxynucleoside kinase 97.8 0.00026 5.6E-09 67.5 12.3 40 186-225 4-47 (216)
145 PRK07429 phosphoribulokinase; 97.8 9E-05 2E-09 74.5 9.7 37 185-221 7-46 (327)
146 cd02019 NK Nucleoside/nucleoti 97.8 5.4E-05 1.2E-09 58.9 6.1 29 189-217 2-33 (69)
147 PRK07933 thymidylate kinase; V 97.8 0.00013 2.9E-09 68.6 9.9 25 187-211 1-25 (213)
148 KOG3220 Similar to bacterial d 97.8 0.00023 5E-09 67.6 11.3 38 188-226 3-40 (225)
149 COG4088 Predicted nucleotide k 97.8 0.00011 2.5E-09 70.2 9.0 144 187-342 2-172 (261)
150 PF06414 Zeta_toxin: Zeta toxi 97.8 0.0001 2.2E-09 68.0 8.4 40 182-221 11-53 (199)
151 cd02024 NRK1 Nicotinamide ribo 97.8 0.0001 2.2E-09 68.6 8.4 35 189-223 2-37 (187)
152 PRK05201 hslU ATP-dependent pr 97.8 3.1E-05 6.7E-10 80.5 5.4 57 185-241 49-108 (443)
153 KOG0692 Pentafunctional AROM p 97.8 9.4E-06 2E-10 84.8 1.6 80 136-218 489-595 (595)
154 PLN02748 tRNA dimethylallyltra 97.7 7.1E-05 1.5E-09 78.6 7.9 81 185-265 21-120 (468)
155 PF00004 AAA: ATPase family as 97.7 2.4E-05 5.1E-10 65.3 3.6 30 189-218 1-30 (132)
156 cd01673 dNK Deoxyribonucleosid 97.7 0.00018 4E-09 65.2 9.6 28 189-216 2-29 (193)
157 TIGR00174 miaA tRNA isopenteny 97.7 9.9E-05 2.1E-09 73.1 7.8 77 189-265 2-97 (287)
158 PF03668 ATP_bind_2: P-loop AT 97.7 0.00051 1.1E-08 68.1 12.4 128 188-342 3-155 (284)
159 PRK09087 hypothetical protein; 97.7 7.1E-05 1.5E-09 71.2 5.8 36 187-222 45-80 (226)
160 PF04969 CS: CS domain; Inter 97.7 1.5E-05 3.3E-10 61.5 1.0 75 80-156 2-76 (79)
161 cd06463 p23_like Proteins cont 97.7 2.2E-05 4.7E-10 61.0 1.9 83 83-169 1-83 (84)
162 PF02223 Thymidylate_kin: Thym 97.7 0.00019 4.2E-09 64.8 8.3 21 191-211 1-21 (186)
163 PRK15453 phosphoribulokinase; 97.6 0.0002 4.3E-09 71.1 8.9 38 185-222 4-46 (290)
164 cd06467 p23_NUDC_like p23_like 97.6 2.4E-05 5.3E-10 62.3 1.9 83 81-169 1-84 (85)
165 cd06492 p23_mNUDC_like p23-lik 97.6 3.3E-05 7.2E-10 63.4 2.2 84 81-168 1-85 (87)
166 PF08433 KTI12: Chromatin asso 97.5 0.00043 9.4E-09 67.9 9.6 99 188-293 3-111 (270)
167 PRK08099 bifunctional DNA-bind 97.5 0.0029 6.3E-08 65.3 16.1 56 170-226 204-261 (399)
168 cd00071 GMPK Guanosine monopho 97.5 0.00013 2.7E-09 64.0 5.2 24 189-212 2-25 (137)
169 PRK12337 2-phosphoglycerate ki 97.5 0.001 2.2E-08 70.0 12.7 43 185-227 254-297 (475)
170 PLN02772 guanylate kinase 97.5 0.0015 3.3E-08 67.4 13.7 26 185-210 134-159 (398)
171 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0005 1.1E-08 74.2 9.8 106 183-293 220-364 (802)
172 PRK04220 2-phosphoglycerate ki 97.5 0.0011 2.5E-08 66.1 11.7 40 185-224 91-131 (301)
173 cd06495 p23_NUDCD3_like p23-li 97.5 6.7E-05 1.5E-09 63.7 2.5 83 77-161 3-86 (102)
174 PF01591 6PF2K: 6-phosphofruct 97.4 0.00061 1.3E-08 65.2 8.5 61 185-245 11-77 (222)
175 cd02025 PanK Pantothenate kina 97.4 0.00033 7.2E-09 66.2 6.7 33 189-221 2-41 (220)
176 cd06493 p23_NUDCD1_like p23_NU 97.4 9E-05 2E-09 60.0 2.0 83 81-169 1-84 (85)
177 COG4639 Predicted kinase [Gene 97.3 0.00096 2.1E-08 61.2 8.4 98 187-293 3-109 (168)
178 smart00382 AAA ATPases associa 97.3 0.00025 5.4E-09 57.5 4.1 28 186-213 2-29 (148)
179 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00039 8.4E-09 61.7 5.2 40 174-213 9-49 (133)
180 PF07728 AAA_5: AAA domain (dy 97.3 0.00024 5.3E-09 61.0 3.8 29 188-216 1-29 (139)
181 PRK05439 pantothenate kinase; 97.3 0.0015 3.2E-08 65.5 9.9 36 186-221 86-128 (311)
182 TIGR00554 panK_bact pantothena 97.3 0.0012 2.5E-08 65.6 9.0 36 186-221 62-104 (290)
183 COG1660 Predicted P-loop-conta 97.3 0.0018 3.8E-08 63.7 9.9 129 187-343 2-157 (286)
184 PRK06620 hypothetical protein; 97.2 0.0011 2.4E-08 62.6 8.0 103 187-292 45-149 (214)
185 KOG1384 tRNA delta(2)-isopente 97.2 0.0019 4.2E-08 65.2 10.1 81 185-265 6-105 (348)
186 PRK14729 miaA tRNA delta(2)-is 97.2 0.0012 2.5E-08 66.0 8.3 79 186-265 4-101 (300)
187 KOG1970 Checkpoint RAD17-RFC c 97.2 0.00053 1.1E-08 73.1 5.4 79 126-217 63-141 (634)
188 PRK06893 DNA replication initi 97.1 0.0037 8.1E-08 59.1 10.1 33 186-218 39-76 (229)
189 PHA00729 NTP-binding motif con 97.1 0.0005 1.1E-08 66.1 4.0 26 187-212 18-43 (226)
190 PRK08084 DNA replication initi 97.1 0.0042 9E-08 59.1 10.2 35 186-220 45-84 (235)
191 TIGR01650 PD_CobS cobaltochela 97.0 0.00068 1.5E-08 68.4 4.7 32 185-216 63-94 (327)
192 PF13173 AAA_14: AAA domain 97.0 0.00066 1.4E-08 58.2 4.0 39 185-223 1-43 (128)
193 cd00009 AAA The AAA+ (ATPases 97.0 0.00079 1.7E-08 55.4 4.2 34 185-218 18-54 (151)
194 PF03215 Rad17: Rad17 cell cyc 97.0 0.00068 1.5E-08 72.2 4.7 61 148-217 16-76 (519)
195 PLN02318 phosphoribulokinase/u 97.0 0.005 1.1E-07 66.8 11.1 35 187-221 66-101 (656)
196 TIGR02640 gas_vesic_GvpN gas v 97.0 0.00066 1.4E-08 65.6 4.0 32 184-215 19-50 (262)
197 COG3709 Uncharacterized compon 97.0 0.0065 1.4E-07 56.4 10.1 150 185-344 4-183 (192)
198 KOG0730 AAA+-type ATPase [Post 96.9 0.0041 8.9E-08 67.6 9.8 49 185-233 467-520 (693)
199 PRK05342 clpX ATP-dependent pr 96.9 0.00084 1.8E-08 69.6 4.3 36 184-219 106-141 (412)
200 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0011 2.3E-08 66.5 4.9 45 171-216 148-192 (325)
201 KOG2265 Nuclear distribution p 96.9 0.00056 1.2E-08 63.2 2.5 92 75-178 15-107 (179)
202 PF05496 RuvB_N: Holliday junc 96.9 0.00087 1.9E-08 64.7 3.7 31 187-217 51-81 (233)
203 KOG4238 Bifunctional ATP sulfu 96.9 0.0031 6.7E-08 64.7 7.8 150 181-344 45-221 (627)
204 COG0324 MiaA tRNA delta(2)-iso 96.8 0.004 8.6E-08 62.5 8.3 35 186-220 3-37 (308)
205 PF13521 AAA_28: AAA domain; P 96.8 0.00087 1.9E-08 59.4 3.1 27 188-215 1-27 (163)
206 PRK08903 DnaA regulatory inact 96.8 0.0065 1.4E-07 56.7 9.1 38 186-223 42-84 (227)
207 PHA02244 ATPase-like protein 96.8 0.0015 3.3E-08 67.1 5.0 37 185-221 118-154 (383)
208 cd02028 UMPK_like Uridine mono 96.8 0.00097 2.1E-08 61.0 3.2 34 189-222 2-40 (179)
209 KOG0744 AAA+-type ATPase [Post 96.8 0.00076 1.7E-08 68.3 2.7 32 186-217 177-208 (423)
210 PRK05800 cobU adenosylcobinami 96.8 0.0011 2.3E-08 60.6 3.3 33 187-219 2-36 (170)
211 TIGR01241 FtsH_fam ATP-depende 96.7 0.0038 8.2E-08 65.6 7.4 33 186-218 88-120 (495)
212 CHL00181 cbbX CbbX; Provisiona 96.7 0.0017 3.6E-08 64.0 4.1 42 185-226 58-108 (287)
213 PRK10416 signal recognition pa 96.7 0.013 2.9E-07 58.7 10.4 36 185-220 113-153 (318)
214 TIGR02639 ClpA ATP-dependent C 96.7 0.037 8.1E-07 61.1 14.8 36 183-218 200-245 (731)
215 TIGR02880 cbbX_cfxQ probable R 96.6 0.0018 4E-08 63.5 4.1 42 185-226 57-107 (284)
216 TIGR00382 clpX endopeptidase C 96.6 0.002 4.4E-08 66.9 4.3 34 185-218 115-148 (413)
217 PRK10646 ADP-binding protein; 96.6 0.0035 7.6E-08 57.0 5.2 40 173-212 14-54 (153)
218 COG0466 Lon ATP-dependent Lon 96.6 0.0019 4.1E-08 70.8 4.0 37 181-217 345-381 (782)
219 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0054 1.2E-07 66.5 6.9 42 186-227 545-588 (802)
220 TIGR00635 ruvB Holliday juncti 96.5 0.015 3.3E-07 56.4 9.6 30 186-215 30-59 (305)
221 PF02367 UPF0079: Uncharacteri 96.5 0.0025 5.4E-08 55.9 3.7 29 185-213 14-42 (123)
222 PTZ00454 26S protease regulato 96.5 0.0046 9.9E-08 63.9 6.2 34 185-218 178-211 (398)
223 CHL00195 ycf46 Ycf46; Provisio 96.5 0.0024 5.1E-08 67.7 4.2 34 185-218 258-291 (489)
224 TIGR02881 spore_V_K stage V sp 96.5 0.0022 4.7E-08 61.6 3.5 26 185-210 41-66 (261)
225 PRK11784 tRNA 2-selenouridine 96.5 0.025 5.4E-07 57.5 11.1 106 186-293 141-248 (345)
226 PRK03992 proteasome-activating 96.4 0.0027 5.8E-08 65.0 4.0 33 185-217 164-196 (389)
227 cd03115 SRP The signal recogni 96.4 0.011 2.4E-07 52.7 7.5 33 188-220 2-39 (173)
228 cd02034 CooC The accessory pro 96.4 0.0072 1.5E-07 52.0 5.9 31 189-219 2-37 (116)
229 COG1219 ClpX ATP-dependent pro 96.4 0.0028 6.1E-08 64.2 3.8 37 183-219 94-130 (408)
230 cd02029 PRK_like Phosphoribulo 96.4 0.002 4.3E-08 63.7 2.6 34 189-222 2-40 (277)
231 cd01129 PulE-GspE PulE/GspE Th 96.4 0.024 5.2E-07 55.2 10.0 101 78-224 18-121 (264)
232 KOG2004 Mitochondrial ATP-depe 96.3 0.0026 5.7E-08 69.8 3.5 35 182-216 434-468 (906)
233 PRK04195 replication factor C 96.3 0.0055 1.2E-07 64.2 5.6 33 186-218 39-71 (482)
234 TIGR01243 CDC48 AAA family ATP 96.3 0.0069 1.5E-07 66.7 6.6 42 185-226 486-529 (733)
235 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0035 7.7E-08 53.7 3.4 36 185-222 14-49 (107)
236 PF07724 AAA_2: AAA domain (Cd 96.3 0.0034 7.5E-08 57.4 3.5 32 187-218 4-39 (171)
237 TIGR01242 26Sp45 26S proteasom 96.3 0.0041 8.8E-08 62.7 4.3 33 186-218 156-188 (364)
238 COG2256 MGS1 ATPase related to 96.3 0.0083 1.8E-07 62.2 6.4 35 186-220 48-82 (436)
239 PTZ00361 26 proteosome regulat 96.3 0.0086 1.9E-07 62.7 6.7 34 185-218 216-249 (438)
240 TIGR03499 FlhF flagellar biosy 96.3 0.0084 1.8E-07 58.8 6.3 36 185-220 193-235 (282)
241 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.0034 7.4E-08 57.9 3.3 37 185-221 37-78 (226)
242 TIGR03167 tRNA_sel_U_synt tRNA 96.3 0.039 8.3E-07 55.4 10.9 105 187-293 128-235 (311)
243 CHL00176 ftsH cell division pr 96.3 0.008 1.7E-07 65.7 6.5 33 186-218 216-248 (638)
244 cd06465 p23_hB-ind1_like p23_l 96.2 0.0029 6.3E-08 53.2 2.5 84 80-169 2-86 (108)
245 COG1220 HslU ATP-dependent pro 96.2 0.0085 1.9E-07 61.2 6.1 38 180-217 44-81 (444)
246 PF08303 tRNA_lig_kinase: tRNA 96.2 0.1 2.2E-06 48.3 12.6 61 189-265 2-64 (168)
247 PF13191 AAA_16: AAA ATPase do 96.2 0.0053 1.1E-07 54.2 4.2 43 170-212 6-50 (185)
248 PRK10733 hflB ATP-dependent me 96.2 0.034 7.3E-07 60.8 11.2 33 186-218 185-217 (644)
249 TIGR03689 pup_AAA proteasome A 96.2 0.0071 1.5E-07 64.5 5.8 29 185-213 215-243 (512)
250 PF07726 AAA_3: ATPase family 96.2 0.0031 6.6E-08 56.1 2.4 30 188-217 1-30 (131)
251 COG0714 MoxR-like ATPases [Gen 96.2 0.0043 9.4E-08 61.6 3.8 36 182-217 39-74 (329)
252 KOG0731 AAA+-type ATPase conta 96.1 0.015 3.2E-07 64.5 7.9 42 186-227 344-387 (774)
253 TIGR02782 TrbB_P P-type conjug 96.1 0.031 6.8E-07 55.5 9.5 40 185-224 131-175 (299)
254 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0047 1E-07 63.2 3.7 28 185-212 77-104 (361)
255 KOG3327 Thymidylate kinase/ade 96.1 0.016 3.4E-07 54.7 6.9 151 184-347 3-199 (208)
256 PRK12724 flagellar biosynthesi 96.1 0.027 5.9E-07 59.0 9.3 36 185-220 222-263 (432)
257 PF00448 SRP54: SRP54-type pro 96.1 0.013 2.9E-07 54.7 6.3 34 187-220 2-40 (196)
258 PRK13342 recombination factor 96.1 0.0059 1.3E-07 62.8 4.2 33 186-218 36-68 (413)
259 cd06466 p23_CS_SGT1_like p23_l 96.1 0.0029 6.3E-08 50.0 1.5 83 82-169 1-83 (84)
260 TIGR00064 ftsY signal recognit 96.0 0.025 5.5E-07 55.4 8.3 36 185-220 71-111 (272)
261 CHL00095 clpC Clp protease ATP 96.0 0.1 2.2E-06 58.5 14.0 36 183-218 197-242 (821)
262 PHA02575 1 deoxynucleoside mon 96.0 0.0088 1.9E-07 57.7 4.8 37 187-224 1-38 (227)
263 COG0802 Predicted ATPase or ki 96.0 0.0082 1.8E-07 54.5 4.3 32 181-212 19-51 (149)
264 TIGR03015 pepcterm_ATPase puta 96.0 0.02 4.3E-07 54.2 7.2 25 187-211 44-68 (269)
265 COG1618 Predicted nucleotide k 96.0 0.0057 1.2E-07 56.6 3.3 26 186-211 5-30 (179)
266 PLN00020 ribulose bisphosphate 96.0 0.014 3.1E-07 60.3 6.4 42 186-227 148-191 (413)
267 PRK06526 transposase; Provisio 96.0 0.015 3.3E-07 56.4 6.3 26 185-210 97-122 (254)
268 PRK00080 ruvB Holliday junctio 96.0 0.0068 1.5E-07 60.2 3.9 31 186-216 51-81 (328)
269 PRK05703 flhF flagellar biosyn 95.9 0.023 4.9E-07 59.2 7.9 35 186-220 221-262 (424)
270 COG1072 CoaA Panthothenate kin 95.9 0.021 4.6E-07 56.6 7.2 117 185-315 81-237 (283)
271 PRK00149 dnaA chromosomal repl 95.9 0.064 1.4E-06 55.8 11.1 36 187-222 149-191 (450)
272 PRK12726 flagellar biosynthesi 95.9 0.052 1.1E-06 56.4 10.2 60 161-220 172-245 (407)
273 PF03266 NTPase_1: NTPase; In 95.9 0.0063 1.4E-07 55.5 3.2 23 188-210 1-23 (168)
274 PF13401 AAA_22: AAA domain; P 95.9 0.007 1.5E-07 50.7 3.2 26 185-210 3-28 (131)
275 COG2274 SunT ABC-type bacterio 95.9 0.044 9.6E-07 60.7 10.1 26 185-210 498-523 (709)
276 PF05729 NACHT: NACHT domain 95.9 0.0074 1.6E-07 51.9 3.3 25 187-211 1-25 (166)
277 PRK09183 transposase/IS protei 95.9 0.0097 2.1E-07 57.7 4.5 38 185-222 101-143 (259)
278 COG0464 SpoVK ATPases of the A 95.8 0.021 4.6E-07 59.7 7.1 36 185-220 275-310 (494)
279 TIGR00763 lon ATP-dependent pr 95.8 0.0083 1.8E-07 66.7 4.1 33 185-217 346-378 (775)
280 PF00005 ABC_tran: ABC transpo 95.8 0.0081 1.8E-07 51.0 3.2 27 184-210 9-35 (137)
281 PF01695 IstB_IS21: IstB-like 95.8 0.011 2.5E-07 54.2 4.3 41 185-225 46-91 (178)
282 COG1116 TauB ABC-type nitrate/ 95.8 0.0079 1.7E-07 58.7 3.4 37 183-219 26-66 (248)
283 COG1124 DppF ABC-type dipeptid 95.7 0.0081 1.8E-07 58.6 3.3 40 181-220 28-71 (252)
284 KOG0745 Putative ATP-dependent 95.7 0.0092 2E-07 62.6 3.9 37 183-219 223-259 (564)
285 COG3839 MalK ABC-type sugar tr 95.7 0.0081 1.8E-07 61.0 3.3 35 185-219 28-66 (338)
286 PF00910 RNA_helicase: RNA hel 95.7 0.0075 1.6E-07 50.5 2.6 23 189-211 1-23 (107)
287 KOG3078 Adenylate kinase [Nucl 95.7 0.062 1.3E-06 52.2 9.1 40 185-224 14-53 (235)
288 PRK00771 signal recognition pa 95.7 0.026 5.7E-07 59.1 6.9 36 185-220 94-134 (437)
289 KOG0736 Peroxisome assembly fa 95.6 0.027 5.9E-07 62.5 6.9 42 186-227 705-748 (953)
290 TIGR00960 3a0501s02 Type II (G 95.6 0.011 2.3E-07 54.8 3.3 28 183-210 26-53 (216)
291 PF06068 TIP49: TIP49 C-termin 95.6 0.013 2.9E-07 60.3 4.3 36 182-217 46-83 (398)
292 TIGR01166 cbiO cobalt transpor 95.6 0.011 2.4E-07 53.6 3.3 29 182-210 14-42 (190)
293 PRK05642 DNA replication initi 95.5 0.069 1.5E-06 50.9 8.8 36 187-222 46-86 (234)
294 TIGR01243 CDC48 AAA family ATP 95.5 0.012 2.5E-07 65.0 3.9 34 185-218 211-244 (733)
295 cd03269 ABC_putative_ATPase Th 95.5 0.012 2.5E-07 54.2 3.4 28 183-210 23-50 (210)
296 TIGR00959 ffh signal recogniti 95.5 0.065 1.4E-06 56.1 9.2 35 186-220 99-139 (428)
297 cd03261 ABC_Org_Solvent_Resist 95.5 0.012 2.5E-07 55.3 3.4 28 183-210 23-50 (235)
298 COG4619 ABC-type uncharacteriz 95.5 0.011 2.4E-07 55.5 3.2 29 182-210 25-53 (223)
299 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.012 2.6E-07 54.4 3.4 28 183-210 27-54 (218)
300 cd03292 ABC_FtsE_transporter F 95.5 0.012 2.6E-07 54.1 3.4 28 183-210 24-51 (214)
301 cd03225 ABC_cobalt_CbiO_domain 95.5 0.012 2.6E-07 54.1 3.3 28 183-210 24-51 (211)
302 PRK14956 DNA polymerase III su 95.5 0.061 1.3E-06 57.2 8.9 28 186-213 40-67 (484)
303 TIGR02673 FtsE cell division A 95.5 0.012 2.7E-07 54.1 3.4 28 183-210 25-52 (214)
304 PRK11034 clpA ATP-dependent Cl 95.4 0.29 6.2E-06 54.8 14.5 27 184-210 205-231 (758)
305 CHL00206 ycf2 Ycf2; Provisiona 95.4 0.029 6.2E-07 67.5 7.0 38 185-222 1629-1668(2281)
306 PRK13695 putative NTPase; Prov 95.4 0.013 2.9E-07 52.6 3.4 28 187-214 1-31 (174)
307 cd01130 VirB11-like_ATPase Typ 95.4 0.014 3E-07 53.4 3.5 27 185-211 24-50 (186)
308 PRK08727 hypothetical protein; 95.4 0.16 3.5E-06 48.3 10.9 35 187-221 42-81 (233)
309 TIGR01425 SRP54_euk signal rec 95.4 0.046 9.9E-07 57.3 7.7 35 186-220 100-139 (429)
310 cd03259 ABC_Carb_Solutes_like 95.4 0.013 2.8E-07 54.0 3.4 28 183-210 23-50 (213)
311 TIGR00362 DnaA chromosomal rep 95.4 0.1 2.2E-06 53.3 10.2 36 187-222 137-179 (405)
312 TIGR00368 Mg chelatase-related 95.4 0.0057 1.2E-07 65.0 1.1 37 184-222 209-245 (499)
313 cd03256 ABC_PhnC_transporter A 95.4 0.013 2.8E-07 54.8 3.4 28 183-210 24-51 (241)
314 KOG0739 AAA+-type ATPase [Post 95.4 0.12 2.7E-06 52.4 10.3 135 187-324 167-345 (439)
315 cd03262 ABC_HisP_GlnQ_permease 95.4 0.014 3E-07 53.7 3.4 28 183-210 23-50 (213)
316 cd03219 ABC_Mj1267_LivG_branch 95.4 0.012 2.6E-07 55.0 3.1 28 183-210 23-50 (236)
317 PRK14086 dnaA chromosomal repl 95.4 0.081 1.8E-06 57.7 9.7 37 188-224 316-359 (617)
318 cd03293 ABC_NrtD_SsuB_transpor 95.4 0.014 3E-07 54.2 3.3 28 183-210 27-54 (220)
319 TIGR02203 MsbA_lipidA lipid A 95.3 0.14 2.9E-06 54.2 11.1 34 184-217 356-393 (571)
320 COG1126 GlnQ ABC-type polar am 95.3 0.013 2.9E-07 56.5 3.2 37 182-218 24-64 (240)
321 cd03235 ABC_Metallic_Cations A 95.3 0.013 2.8E-07 54.0 3.1 28 183-210 22-49 (213)
322 cd03224 ABC_TM1139_LivF_branch 95.3 0.013 2.8E-07 54.1 3.1 28 183-210 23-50 (222)
323 cd03260 ABC_PstB_phosphate_tra 95.3 0.015 3.3E-07 54.1 3.6 28 183-210 23-50 (227)
324 TIGR02315 ABC_phnC phosphonate 95.3 0.014 3.1E-07 54.8 3.4 28 183-210 25-52 (243)
325 cd03258 ABC_MetN_methionine_tr 95.3 0.014 3.1E-07 54.5 3.4 28 183-210 28-55 (233)
326 PRK14974 cell division protein 95.3 0.077 1.7E-06 53.8 8.8 36 185-220 139-179 (336)
327 cd03226 ABC_cobalt_CbiO_domain 95.3 0.015 3.1E-07 53.5 3.3 28 183-210 23-50 (205)
328 PRK11331 5-methylcytosine-spec 95.3 0.014 3E-07 61.5 3.5 31 182-212 190-220 (459)
329 COG2074 2-phosphoglycerate kin 95.3 0.03 6.6E-07 55.2 5.6 49 172-224 79-128 (299)
330 cd03265 ABC_DrrA DrrA is the A 95.3 0.015 3.3E-07 54.0 3.4 28 183-210 23-50 (220)
331 cd03230 ABC_DR_subfamily_A Thi 95.3 0.015 3.3E-07 52.2 3.3 29 182-210 22-50 (173)
332 PHA02544 44 clamp loader, smal 95.3 0.022 4.8E-07 55.6 4.7 30 188-217 45-74 (316)
333 TIGR02211 LolD_lipo_ex lipopro 95.3 0.015 3.3E-07 53.8 3.4 28 183-210 28-55 (221)
334 PRK00411 cdc6 cell division co 95.3 0.03 6.4E-07 56.3 5.7 26 185-210 54-79 (394)
335 TIGR00602 rad24 checkpoint pro 95.3 0.011 2.4E-07 64.6 2.7 33 184-216 108-140 (637)
336 TIGR03608 L_ocin_972_ABC putat 95.3 0.016 3.4E-07 53.0 3.4 28 183-210 21-48 (206)
337 PRK10787 DNA-binding ATP-depen 95.3 0.017 3.7E-07 64.5 4.3 34 184-217 347-380 (784)
338 PRK08181 transposase; Validate 95.3 0.023 5E-07 55.8 4.7 40 185-224 105-149 (269)
339 TIGR01978 sufC FeS assembly AT 95.3 0.015 3.3E-07 54.5 3.3 28 183-210 23-50 (243)
340 PRK12727 flagellar biosynthesi 95.3 0.058 1.3E-06 58.1 8.0 36 185-220 349-391 (559)
341 cd03301 ABC_MalK_N The N-termi 95.3 0.016 3.5E-07 53.3 3.4 28 183-210 23-50 (213)
342 cd03263 ABC_subfamily_A The AB 95.2 0.016 3.5E-07 53.6 3.4 28 183-210 25-52 (220)
343 cd01918 HprK_C HprK/P, the bif 95.2 0.02 4.3E-07 51.9 3.8 35 184-219 12-46 (149)
344 COG1222 RPT1 ATP-dependent 26S 95.2 0.053 1.1E-06 55.8 7.2 62 158-227 165-228 (406)
345 PRK11034 clpA ATP-dependent Cl 95.2 0.016 3.5E-07 64.5 3.9 31 188-218 490-520 (758)
346 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.023 4.9E-07 44.1 3.6 30 189-218 2-34 (99)
347 PRK11124 artP arginine transpo 95.2 0.017 3.6E-07 54.4 3.4 28 183-210 25-52 (242)
348 COG4608 AppF ABC-type oligopep 95.2 0.016 3.4E-07 57.2 3.3 37 183-219 36-76 (268)
349 cd03218 ABC_YhbG The ABC trans 95.2 0.017 3.6E-07 53.9 3.3 28 183-210 23-50 (232)
350 TIGR03410 urea_trans_UrtE urea 95.2 0.016 3.6E-07 54.0 3.3 28 183-210 23-50 (230)
351 PRK13541 cytochrome c biogenes 95.2 0.018 3.8E-07 52.7 3.4 28 183-210 23-50 (195)
352 cd03257 ABC_NikE_OppD_transpor 95.2 0.017 3.7E-07 53.5 3.3 28 183-210 28-55 (228)
353 PRK10584 putative ABC transpor 95.2 0.018 3.8E-07 53.7 3.4 29 182-210 32-60 (228)
354 cd03229 ABC_Class3 This class 95.2 0.018 3.9E-07 51.9 3.4 28 183-210 23-50 (178)
355 PF01745 IPT: Isopentenyl tran 95.2 0.016 3.5E-07 55.8 3.2 33 188-220 3-35 (233)
356 TIGR03864 PQQ_ABC_ATP ABC tran 95.1 0.018 3.9E-07 54.1 3.4 28 183-210 24-51 (236)
357 PF00308 Bac_DnaA: Bacterial d 95.1 0.19 4.1E-06 47.5 10.4 106 187-292 35-168 (219)
358 TIGR03345 VI_ClpV1 type VI sec 95.1 0.14 3E-06 57.9 11.0 29 183-211 205-233 (852)
359 cd03112 CobW_like The function 95.1 0.027 5.9E-07 50.4 4.4 22 188-209 2-23 (158)
360 PRK15177 Vi polysaccharide exp 95.1 0.018 3.8E-07 53.8 3.3 27 184-210 11-37 (213)
361 cd03266 ABC_NatA_sodium_export 95.1 0.018 3.9E-07 53.2 3.3 29 182-210 27-55 (218)
362 PRK11629 lolD lipoprotein tran 95.1 0.018 3.9E-07 54.0 3.4 28 183-210 32-59 (233)
363 COG1419 FlhF Flagellar GTP-bin 95.1 0.15 3.2E-06 53.1 10.2 113 172-293 186-323 (407)
364 cd03268 ABC_BcrA_bacitracin_re 95.1 0.019 4.1E-07 52.8 3.3 27 184-210 24-50 (208)
365 PF10662 PduV-EutP: Ethanolami 95.1 0.017 3.6E-07 52.0 2.9 23 187-209 2-24 (143)
366 cd03264 ABC_drug_resistance_li 95.1 0.018 3.8E-07 53.1 3.1 25 185-210 25-49 (211)
367 cd03296 ABC_CysA_sulfate_impor 95.1 0.019 4.1E-07 54.1 3.4 28 183-210 25-52 (239)
368 PRK11248 tauB taurine transpor 95.1 0.019 4.1E-07 55.1 3.4 28 183-210 24-51 (255)
369 COG1120 FepC ABC-type cobalami 95.1 0.019 4E-07 56.4 3.4 39 183-221 25-67 (258)
370 PRK06995 flhF flagellar biosyn 95.1 0.031 6.6E-07 59.4 5.2 36 185-220 255-297 (484)
371 cd03222 ABC_RNaseL_inhibitor T 95.0 0.02 4.2E-07 52.8 3.3 26 185-210 24-49 (177)
372 COG3842 PotA ABC-type spermidi 95.0 0.018 3.9E-07 58.8 3.3 27 184-210 29-55 (352)
373 PRK11264 putative amino-acid A 95.0 0.02 4.3E-07 54.1 3.4 27 184-210 27-53 (250)
374 cd03232 ABC_PDR_domain2 The pl 95.0 0.02 4.4E-07 52.4 3.3 27 183-209 30-56 (192)
375 PRK12723 flagellar biosynthesi 95.0 0.064 1.4E-06 55.4 7.2 36 185-220 173-217 (388)
376 PRK14250 phosphate ABC transpo 95.0 0.02 4.4E-07 54.1 3.4 28 183-210 26-53 (241)
377 PRK14242 phosphate transporter 95.0 0.021 4.5E-07 54.2 3.4 28 183-210 29-56 (253)
378 PRK09493 glnQ glutamine ABC tr 95.0 0.021 4.5E-07 53.7 3.4 28 183-210 24-51 (240)
379 cd03247 ABCC_cytochrome_bd The 95.0 0.022 4.8E-07 51.3 3.4 29 182-210 24-52 (178)
380 PRK14247 phosphate ABC transpo 95.0 0.021 4.6E-07 54.0 3.4 28 183-210 26-53 (250)
381 PRK10867 signal recognition pa 95.0 0.079 1.7E-06 55.5 7.8 35 186-220 100-140 (433)
382 cd03254 ABCC_Glucan_exporter_l 94.9 0.022 4.7E-07 53.0 3.4 29 182-210 25-53 (229)
383 PRK10744 pstB phosphate transp 94.9 0.021 4.6E-07 54.6 3.4 28 183-210 36-63 (260)
384 COG1136 SalX ABC-type antimicr 94.9 0.022 4.7E-07 54.9 3.4 34 184-217 29-66 (226)
385 PF08477 Miro: Miro-like prote 94.9 0.024 5.1E-07 46.7 3.2 23 188-210 1-23 (119)
386 cd04155 Arl3 Arl3 subfamily. 94.9 0.028 6E-07 49.1 3.8 28 182-209 10-37 (173)
387 PRK10751 molybdopterin-guanine 94.9 0.023 5E-07 52.5 3.5 27 185-211 5-31 (173)
388 PRK10247 putative ABC transpor 94.9 0.023 4.9E-07 53.2 3.4 28 183-210 30-57 (225)
389 PRK11889 flhF flagellar biosyn 94.9 0.044 9.6E-07 57.3 5.8 35 186-220 241-280 (436)
390 PRK10895 lipopolysaccharide AB 94.9 0.022 4.8E-07 53.6 3.3 28 183-210 26-53 (241)
391 TIGR01189 ccmA heme ABC export 94.9 0.023 5E-07 52.0 3.3 28 183-210 23-50 (198)
392 cd03233 ABC_PDR_domain1 The pl 94.9 0.02 4.3E-07 52.9 2.9 29 183-211 30-58 (202)
393 PRK14274 phosphate ABC transpo 94.9 0.024 5.2E-07 54.1 3.6 27 184-210 36-62 (259)
394 PRK14961 DNA polymerase III su 94.9 0.031 6.7E-07 56.6 4.6 26 187-212 39-64 (363)
395 KOG3877 NADH:ubiquinone oxidor 94.9 0.016 3.5E-07 57.9 2.4 42 185-226 70-114 (393)
396 PRK14262 phosphate ABC transpo 94.9 0.022 4.9E-07 53.8 3.4 28 183-210 26-53 (250)
397 TIGR03005 ectoine_ehuA ectoine 94.9 0.022 4.8E-07 54.0 3.3 28 183-210 23-50 (252)
398 cd03223 ABCD_peroxisomal_ALDP 94.9 0.024 5.2E-07 50.8 3.4 29 182-210 23-51 (166)
399 TIGR03771 anch_rpt_ABC anchore 94.9 0.023 4.9E-07 53.2 3.3 26 185-210 5-30 (223)
400 PRK10908 cell division protein 94.9 0.023 5.1E-07 52.8 3.4 28 183-210 25-52 (222)
401 PRK14088 dnaA chromosomal repl 94.9 0.16 3.4E-06 53.1 9.8 38 187-224 131-175 (440)
402 PRK13540 cytochrome c biogenes 94.9 0.024 5.2E-07 52.0 3.4 27 184-210 25-51 (200)
403 PRK11300 livG leucine/isoleuci 94.9 0.021 4.6E-07 54.1 3.1 27 184-210 29-55 (255)
404 cd03234 ABCG_White The White s 94.9 0.022 4.8E-07 53.1 3.2 30 182-211 29-58 (226)
405 TIGR02770 nickel_nikD nickel i 94.9 0.023 4.9E-07 53.3 3.3 28 184-211 10-37 (230)
406 cd03215 ABC_Carb_Monos_II This 94.9 0.024 5.1E-07 51.4 3.3 28 183-210 23-50 (182)
407 cd03216 ABC_Carb_Monos_I This 94.9 0.025 5.4E-07 50.6 3.4 29 182-210 22-50 (163)
408 cd03295 ABC_OpuCA_Osmoprotecti 94.8 0.024 5.3E-07 53.4 3.4 29 182-210 23-51 (242)
409 TIGR02323 CP_lyasePhnK phospho 94.8 0.024 5.1E-07 53.8 3.3 28 183-210 26-53 (253)
410 cd03246 ABCC_Protease_Secretio 94.8 0.026 5.7E-07 50.7 3.4 28 183-210 25-52 (173)
411 TIGR00972 3a0107s01c2 phosphat 94.8 0.024 5.2E-07 53.6 3.4 28 183-210 24-51 (247)
412 KOG1969 DNA replication checkp 94.8 0.023 5E-07 62.7 3.6 33 185-217 325-357 (877)
413 TIGR01184 ntrCD nitrate transp 94.8 0.025 5.3E-07 53.2 3.4 27 184-210 9-35 (230)
414 PRK13543 cytochrome c biogenes 94.8 0.025 5.4E-07 52.5 3.4 29 182-210 33-61 (214)
415 PRK14949 DNA polymerase III su 94.8 0.48 1E-05 54.0 13.9 27 187-213 39-65 (944)
416 PRK14267 phosphate ABC transpo 94.8 0.024 5.3E-07 53.7 3.3 28 183-210 27-54 (253)
417 PF00931 NB-ARC: NB-ARC domain 94.8 0.033 7.2E-07 53.0 4.3 26 184-209 17-42 (287)
418 cd03298 ABC_ThiQ_thiamine_tran 94.8 0.025 5.5E-07 52.0 3.4 29 182-210 20-48 (211)
419 PRK14241 phosphate transporter 94.8 0.025 5.3E-07 54.0 3.3 28 183-210 27-54 (258)
420 PRK10771 thiQ thiamine transpo 94.8 0.025 5.4E-07 53.0 3.3 28 183-210 22-49 (232)
421 PRK12377 putative replication 94.8 0.11 2.3E-06 50.6 7.8 39 186-224 101-144 (248)
422 cd03251 ABCC_MsbA MsbA is an e 94.8 0.026 5.6E-07 52.7 3.4 28 183-210 25-52 (234)
423 KOG2028 ATPase related to the 94.8 0.015 3.2E-07 60.2 1.8 82 119-217 112-196 (554)
424 cd01120 RecA-like_NTPases RecA 94.8 0.024 5.2E-07 48.1 2.9 32 189-220 2-38 (165)
425 PRK13539 cytochrome c biogenes 94.8 0.026 5.7E-07 52.1 3.4 27 184-210 26-52 (207)
426 PRK10619 histidine/lysine/argi 94.7 0.026 5.6E-07 53.8 3.4 27 184-210 29-55 (257)
427 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.026 5.6E-07 54.2 3.4 26 185-210 24-49 (246)
428 PRK14256 phosphate ABC transpo 94.7 0.026 5.7E-07 53.5 3.4 28 183-210 27-54 (252)
429 cd03245 ABCC_bacteriocin_expor 94.7 0.027 5.8E-07 52.1 3.4 29 182-210 26-54 (220)
430 cd03214 ABC_Iron-Siderophores_ 94.7 0.028 6E-07 50.9 3.4 28 183-210 22-49 (180)
431 cd03228 ABCC_MRP_Like The MRP 94.7 0.028 6.1E-07 50.4 3.4 29 182-210 24-52 (171)
432 PRK14248 phosphate ABC transpo 94.7 0.026 5.7E-07 54.2 3.4 28 183-210 44-71 (268)
433 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.027 6E-07 52.8 3.5 28 183-210 26-53 (238)
434 PRK04296 thymidine kinase; Pro 94.7 0.025 5.4E-07 52.1 3.1 25 186-210 2-26 (190)
435 PRK06645 DNA polymerase III su 94.7 0.035 7.5E-07 59.3 4.6 28 186-213 43-70 (507)
436 PRK11831 putative ABC transpor 94.7 0.026 5.5E-07 54.5 3.3 27 184-210 31-57 (269)
437 PRK12402 replication factor C 94.7 0.029 6.2E-07 54.8 3.7 24 188-211 38-61 (337)
438 COG1341 Predicted GTPase or GT 94.7 0.025 5.5E-07 58.5 3.4 37 183-219 70-111 (398)
439 PRK14244 phosphate ABC transpo 94.7 0.028 6E-07 53.3 3.4 28 183-210 28-55 (251)
440 cd03248 ABCC_TAP TAP, the Tran 94.7 0.028 6.1E-07 52.3 3.4 29 182-210 36-64 (226)
441 cd03238 ABC_UvrA The excision 94.7 0.029 6.2E-07 51.6 3.4 26 183-208 18-43 (176)
442 PRK10575 iron-hydroxamate tran 94.7 0.025 5.3E-07 54.4 3.1 28 183-210 34-61 (265)
443 PRK14239 phosphate transporter 94.7 0.027 5.8E-07 53.3 3.3 27 183-209 28-54 (252)
444 PRK11247 ssuB aliphatic sulfon 94.7 0.027 5.9E-07 54.4 3.4 28 183-210 35-62 (257)
445 PRK14255 phosphate ABC transpo 94.7 0.027 5.9E-07 53.3 3.4 28 183-210 28-55 (252)
446 cd03250 ABCC_MRP_domain1 Domai 94.7 0.029 6.2E-07 51.5 3.4 29 182-210 27-55 (204)
447 cd03252 ABCC_Hemolysin The ABC 94.7 0.028 6.1E-07 52.7 3.4 28 183-210 25-52 (237)
448 PRK15093 antimicrobial peptide 94.7 0.025 5.4E-07 56.6 3.2 29 182-210 29-57 (330)
449 PRK13341 recombination factor 94.7 0.033 7.1E-07 61.8 4.3 35 186-220 52-86 (725)
450 TIGR02324 CP_lyasePhnL phospho 94.6 0.029 6.2E-07 52.1 3.4 29 182-210 30-58 (224)
451 PRK13538 cytochrome c biogenes 94.6 0.029 6.2E-07 51.7 3.3 29 182-210 23-51 (204)
452 PRK11701 phnK phosphonate C-P 94.6 0.028 6.1E-07 53.6 3.4 29 182-210 28-56 (258)
453 TIGR02868 CydC thiol reductant 94.6 0.023 5E-07 59.6 3.0 28 183-210 358-385 (529)
454 PRK14253 phosphate ABC transpo 94.6 0.029 6.2E-07 53.1 3.4 28 183-210 26-53 (249)
455 PRK14962 DNA polymerase III su 94.6 0.037 8.1E-07 58.4 4.6 26 187-212 37-62 (472)
456 PRK14273 phosphate ABC transpo 94.6 0.029 6.2E-07 53.3 3.4 28 183-210 30-57 (254)
457 PRK10865 protein disaggregatio 94.6 0.03 6.6E-07 63.1 4.1 28 183-210 196-223 (857)
458 PRK14251 phosphate ABC transpo 94.6 0.029 6.3E-07 53.1 3.4 28 183-210 27-54 (251)
459 PRK13645 cbiO cobalt transport 94.6 0.028 6.1E-07 54.7 3.3 28 183-210 34-61 (289)
460 KOG0735 AAA+-type ATPase [Post 94.6 0.098 2.1E-06 58.0 7.7 46 182-227 697-744 (952)
461 cd03290 ABCC_SUR1_N The SUR do 94.6 0.03 6.5E-07 51.9 3.4 28 183-210 24-51 (218)
462 PRK13638 cbiO cobalt transport 94.6 0.027 5.9E-07 54.2 3.2 27 184-210 25-51 (271)
463 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.6 0.029 6.4E-07 52.6 3.3 28 183-210 45-72 (224)
464 cd03244 ABCC_MRP_domain2 Domai 94.6 0.031 6.7E-07 51.7 3.4 29 182-210 26-54 (221)
465 cd01131 PilT Pilus retraction 94.6 0.028 6.1E-07 52.1 3.1 24 188-211 3-26 (198)
466 TIGR01277 thiQ thiamine ABC tr 94.6 0.03 6.6E-07 51.8 3.3 29 182-210 20-48 (213)
467 TIGR01618 phage_P_loop phage n 94.6 0.047 1E-06 52.3 4.7 38 186-225 12-49 (220)
468 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.032 6.9E-07 51.3 3.4 29 182-210 30-58 (207)
469 PRK14259 phosphate ABC transpo 94.6 0.03 6.5E-07 54.1 3.3 28 183-210 36-63 (269)
470 PRK14261 phosphate ABC transpo 94.6 0.03 6.6E-07 53.1 3.3 28 183-210 29-56 (253)
471 PRK09580 sufC cysteine desulfu 94.6 0.028 6.1E-07 52.9 3.1 28 183-210 24-51 (248)
472 cd03267 ABC_NatA_like Similar 94.5 0.031 6.7E-07 52.8 3.3 27 184-210 45-71 (236)
473 PRK15455 PrkA family serine pr 94.5 0.026 5.7E-07 61.3 3.2 27 185-211 102-128 (644)
474 CHL00131 ycf16 sulfate ABC tra 94.5 0.028 6.1E-07 53.1 3.1 27 183-209 30-56 (252)
475 PRK14237 phosphate transporter 94.5 0.032 6.9E-07 53.8 3.5 28 183-210 43-70 (267)
476 TIGR02928 orc1/cdc6 family rep 94.5 0.045 9.8E-07 54.3 4.6 25 186-210 40-64 (365)
477 KOG0734 AAA+-type ATPase conta 94.5 0.066 1.4E-06 57.7 6.0 63 186-260 337-400 (752)
478 TIGR02639 ClpA ATP-dependent C 94.5 0.031 6.6E-07 61.8 3.7 35 188-222 486-522 (731)
479 cd03253 ABCC_ATM1_transporter 94.5 0.032 7E-07 52.1 3.4 28 183-210 24-51 (236)
480 PF03193 DUF258: Protein of un 94.5 0.033 7.1E-07 51.1 3.3 31 180-210 29-59 (161)
481 PRK15056 manganese/iron transp 94.5 0.031 6.7E-07 54.0 3.3 28 183-210 30-57 (272)
482 PRK14269 phosphate ABC transpo 94.5 0.032 7E-07 52.8 3.4 29 182-210 24-52 (246)
483 PRK14260 phosphate ABC transpo 94.5 0.032 7E-07 53.3 3.4 29 182-210 29-57 (259)
484 PRK14240 phosphate transporter 94.5 0.032 7E-07 52.8 3.4 28 183-210 26-53 (250)
485 PRK14245 phosphate ABC transpo 94.5 0.032 7E-07 52.8 3.4 27 183-209 26-52 (250)
486 TIGR03411 urea_trans_UrtD urea 94.5 0.032 6.9E-07 52.4 3.3 28 183-210 25-52 (242)
487 PLN03025 replication factor C 94.5 0.033 7.2E-07 55.1 3.6 24 187-210 35-58 (319)
488 cd03294 ABC_Pro_Gly_Bertaine T 94.5 0.032 7E-07 53.8 3.4 29 182-210 46-74 (269)
489 PRK13649 cbiO cobalt transport 94.5 0.031 6.7E-07 54.0 3.3 27 184-210 31-57 (280)
490 PRK10418 nikD nickel transport 94.5 0.033 7E-07 53.1 3.3 28 183-210 26-53 (254)
491 PRK13632 cbiO cobalt transport 94.5 0.032 7E-07 53.8 3.3 28 183-210 32-59 (271)
492 PRK13648 cbiO cobalt transport 94.4 0.033 7.2E-07 53.6 3.4 28 183-210 32-59 (269)
493 PRK14955 DNA polymerase III su 94.4 0.036 7.8E-07 56.9 3.8 27 187-213 39-65 (397)
494 cd03272 ABC_SMC3_euk Eukaryoti 94.4 0.039 8.4E-07 51.8 3.7 29 183-211 20-48 (243)
495 PRK09544 znuC high-affinity zi 94.4 0.034 7.3E-07 53.4 3.4 28 183-210 27-54 (251)
496 PRK10419 nikE nickel transport 94.4 0.033 7.1E-07 53.8 3.3 29 182-210 34-62 (268)
497 PLN02796 D-glycerate 3-kinase 94.4 0.035 7.5E-07 56.7 3.6 35 187-221 101-140 (347)
498 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.034 7.4E-07 48.8 3.2 28 183-210 23-50 (144)
499 COG1484 DnaC DNA replication p 94.4 0.16 3.6E-06 49.3 8.1 70 183-265 102-178 (254)
500 PRK14963 DNA polymerase III su 94.4 0.03 6.6E-07 59.5 3.3 26 187-212 37-62 (504)
No 1
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=277.64 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=141.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG 265 (388)
.++|||||||||||||||+.||+.|+++|+|+|.+||+.+||+|++||+++||+.||++|.++++++...++.|||||||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999877899999999
Q ss_pred cccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCccc
Q 016486 266 QQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADH 329 (388)
Q Consensus 266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~ 329 (388)
++++++||.+|+. |++|||+++++. | ..++.+.++++|++|.+.|++ ||++++++..+ +
T Consensus 82 ---~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~-~- 156 (172)
T COG0703 82 ---AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRS-E- 156 (172)
T ss_pred ---cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCc-H-
Confidence 6999999999996 899999999988 1 245568899999999999999 89999888876 3
Q ss_pred HHHHHHHHHHHHHHhh
Q 016486 330 AKSVAQASLSALKQLI 345 (388)
Q Consensus 330 ~eeVa~eIl~~L~~~~ 345 (388)
+++.+|+..|....
T Consensus 157 --~v~~~i~~~l~~~~ 170 (172)
T COG0703 157 --EVVEEILEALEGSL 170 (172)
T ss_pred --HHHHHHHHHHHHhc
Confidence 89999999988654
No 2
>PLN02199 shikimate kinase
Probab=100.00 E-value=6e-35 Score=286.00 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=175.8
Q ss_pred CCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEE
Q 016486 113 GTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLV 192 (388)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLI 192 (388)
..|++|.-. ++++..+||++.|| | +|++. ++.+.... .+++++++|+|+
T Consensus 60 ~~~~~~~~~-~~~~~~~le~~~~~----~------~de~~--Lk~~a~~i------------------~~~l~~~~I~LI 108 (303)
T PLN02199 60 AVSPAVSCS-DNNSSALLETGSVY----P------FDEDI--LKRKAEEV------------------KPYLNGRSMYLV 108 (303)
T ss_pred ccccccccC-CCCchhhcccCCCC----C------CCHHH--HHHHHHHH------------------HHHcCCCEEEEE
Confidence 345666544 88889999999998 6 67764 66665533 678889999999
Q ss_pred ecCCCchHHHHHHHHHhcCCcceechhHHHHH-hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccc
Q 016486 193 GDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAA 271 (388)
Q Consensus 193 G~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~-~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~ 271 (388)
|+|||||||||+.||+.||++|||+|.+|++. .|+++.+||+..||+.||++|.++|+++....++||||||| +++
T Consensus 109 G~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG---~V~ 185 (303)
T PLN02199 109 GMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGG---AVI 185 (303)
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCc---ccC
Confidence 99999999999999999999999999999997 68999999999999999999999999998777899999999 699
Q ss_pred cHHHHHhhcCCcEEEEEcCccc------c-c---------cC------HHHHHHHHHHHhHhccccCcEEEE--------
Q 016486 272 RADKWQHLYAGFTVWLSQTEAM------D-E---------NS------AKEEARRHVKDGKLGYSNADVVVK-------- 321 (388)
Q Consensus 272 r~enr~~L~~g~VVyLd~~~e~------D-~---------~d------~~e~l~~l~~eR~~~Y~~AD~vV~-------- 321 (388)
+++||++|++|++|||++++++ + . .+ +.+.+.++|++|.++|++||++|+
T Consensus 186 ~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~ 265 (303)
T PLN02199 186 RPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKR 265 (303)
T ss_pred CHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccc
Confidence 9999999999999999999987 1 0 11 146899999999999999999999
Q ss_pred ----cCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 016486 322 ----LQGWDADHAKSVAQASLSALKQLIQSDKKL 351 (388)
Q Consensus 322 ----~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l 351 (388)
+++.++ ++++.+|++.++.++.+++.|
T Consensus 266 ~~~~td~~s~---~ei~~eIl~~l~~~l~~~~~~ 296 (303)
T PLN02199 266 GYKNVSDLTP---TEIAIEAFEQVLSFLEKEETM 296 (303)
T ss_pred cccccCCCCH---HHHHHHHHHHHHHHHhhcccc
Confidence 666665 599999999999999877765
No 3
>PRK13948 shikimate kinase; Provisional
Probab=100.00 E-value=4.4e-32 Score=249.15 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=142.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt 262 (388)
...+.+|+|+|+|||||||+|+.||+.||++|||+|.++++.+|++++++|++.||+.||++|.++++++....+.||||
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~ 86 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL 86 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999998777899999
Q ss_pred cCCcccccccHHHHHhhcC-CcEEEEEcCccc-------c------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcc
Q 016486 263 LGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDAD 328 (388)
Q Consensus 263 GGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e 328 (388)
||| ++.+++|++.|++ |++|||++++++ + ..+..+++.++|++|.++|+.||++|++++.+++
T Consensus 87 GgG---~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~~ 163 (182)
T PRK13948 87 GGG---TFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRSE 163 (182)
T ss_pred CCc---EEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHH
Confidence 999 6999999999886 899999999987 1 1234678999999999999889999999988765
Q ss_pred cHHHHHHHHHHHHHHhh
Q 016486 329 HAKSVAQASLSALKQLI 345 (388)
Q Consensus 329 ~~eeVa~eIl~~L~~~~ 345 (388)
+++++|++.|+.++
T Consensus 164 ---ei~~~i~~~l~~~~ 177 (182)
T PRK13948 164 ---EVVEEIVEKLWAWA 177 (182)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 99999999998754
No 4
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.97 E-value=2.8e-30 Score=271.28 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=154.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
+...|+|+|||||||||||+.||++||++|+|+|++||+.+|++++++|+++||+.||++|.++|++++...+.||||||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG 84 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG 84 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999998866679999999
Q ss_pred CcccccccHHHHHhh----cC-CcEEEEEcCccc-------cc------cCHHHHHHHHHHHhHhcccc-CcEEEEcCCC
Q 016486 265 GQQGAAARADKWQHL----YA-GFTVWLSQTEAM-------DE------NSAKEEARRHVKDGKLGYSN-ADVVVKLQGW 325 (388)
Q Consensus 265 G~~gav~r~enr~~L----~~-g~VVyLd~~~e~-------D~------~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~ 325 (388)
| ++++++||++| ++ |++|||++++++ +. .+..+++.++|++|.+.|++ ||++|++++.
T Consensus 85 G---~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~~~~~ 161 (542)
T PRK14021 85 G---APMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHTRGL 161 (542)
T ss_pred c---hhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEECCCC
Confidence 9 69999999976 44 899999999987 11 23467899999999999999 9999999998
Q ss_pred CcccHHHHHHHHHHHHHHhhhcCCCC-CCCccceeeccccCCCCCCC
Q 016486 326 DADHAKSVAQASLSALKQLIQSDKKL-PGKKSLYIRLGCRGDWPNIK 371 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~~~~~~~~~l-~g~k~lyi~~g~~g~~~~~~ 371 (388)
+++ +++++|++.++.....-..+ .+.+.++++.|+..+.+++.
T Consensus 162 ~~~---~~~~~i~~~~~~~~~~v~~~~~~p~~v~iG~g~l~~l~~~l 205 (542)
T PRK14021 162 TPQ---AAAKKLIDMVAERTVHVTGAGIEPYDVRIGEGAMNHLPQVL 205 (542)
T ss_pred CHH---HHHHHHHHHHHhcceEeecCCCCCceEEEcCChHHHHHHHH
Confidence 765 99999999997632211111 34577899999877665544
No 5
>PRK13949 shikimate kinase; Provisional
Probab=99.96 E-value=3e-29 Score=226.70 Aligned_cols=149 Identities=20% Similarity=0.246 Sum_probs=133.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|+|||||||+|+.||+.||++|+|+|.++++..++++.++|++.|++.||++|.++++++....+.|||||||
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg- 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG- 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc-
Confidence 4799999999999999999999999999999999999999999999999999999999999999987667899999999
Q ss_pred ccccccHHHHHhhcC-CcEEEEEcCccc-------cc--------cC---HHHHHHHHHHHhHhccccCcEEEEcCCCCc
Q 016486 267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------DE--------NS---AKEEARRHVKDGKLGYSNADVVVKLQGWDA 327 (388)
Q Consensus 267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~--------~d---~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~ 327 (388)
++..++++++|++ |++|||++|++. +. .+ ..+.+.++|++|.++|++||++|++++.++
T Consensus 81 --~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~ 158 (169)
T PRK13949 81 --APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKLED 158 (169)
T ss_pred --ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence 5999999999986 999999999986 10 11 124678899999999999999999999875
Q ss_pred ccHHHHHHHHHHHH
Q 016486 328 DHAKSVAQASLSAL 341 (388)
Q Consensus 328 e~~eeVa~eIl~~L 341 (388)
++++++|++.+
T Consensus 159 ---~e~~~~I~~~~ 169 (169)
T PRK13949 159 ---ESQIEQLVQRL 169 (169)
T ss_pred ---HHHHHHHHHhC
Confidence 49999988753
No 6
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.96 E-value=2.7e-29 Score=223.26 Aligned_cols=142 Identities=23% Similarity=0.283 Sum_probs=123.1
Q ss_pred CCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHH
Q 016486 195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARAD 274 (388)
Q Consensus 195 ~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~e 274 (388)
|||||||||++||+.||++|+|+|++|++.+|++++++|.++|++.||+.|.++|+++....++||||||| +++.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG---~~~~~~ 77 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGG---IVLKEE 77 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TT---GGGSHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCC---CcCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999877999999999 699999
Q ss_pred HHHhhcC-CcEEEEEcCccc--------cc------cCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHHHHHHHHH
Q 016486 275 KWQHLYA-GFTVWLSQTEAM--------DE------NSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAKSVAQASL 338 (388)
Q Consensus 275 nr~~L~~-g~VVyLd~~~e~--------D~------~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl 338 (388)
++++|++ +.+|||+++++. +. ....+.+.+++.+|.+.|++ ++++|++++.++ ++++++|+
T Consensus 78 ~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~---~~i~~~i~ 154 (158)
T PF01202_consen 78 NRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPP---EEIAEEIL 154 (158)
T ss_dssp HHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHH---HHHHHHHH
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCH---HHHHHHHH
Confidence 9999995 999999999987 11 11223456666699999999 889999998764 49999999
Q ss_pred HHHH
Q 016486 339 SALK 342 (388)
Q Consensus 339 ~~L~ 342 (388)
+.|+
T Consensus 155 ~~l~ 158 (158)
T PF01202_consen 155 EFLK 158 (158)
T ss_dssp HHH-
T ss_pred HHhC
Confidence 9875
No 7
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.96 E-value=5.8e-28 Score=218.45 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=138.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
+.++|+|+|++||||||+|+.||+.+|++|+|+|..+++..|+++.++|+..|+..||+.|.++++.+.....+||+|||
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg 82 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG 82 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999998877789999999
Q ss_pred CcccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486 265 GQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDAD 328 (388)
Q Consensus 265 G~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e 328 (388)
| ++.+++++++|++ +++|||++|++. + .....+.+.+++++|.++|++ ||++|++++.+++
T Consensus 83 g---~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt~~~s~~ 159 (172)
T PRK05057 83 G---SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIRTDDQSAK 159 (172)
T ss_pred c---hhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEECCCCCHH
Confidence 9 6999999999985 999999999987 1 123456799999999999999 9999999998865
Q ss_pred cHHHHHHHHHHHHHH
Q 016486 329 HAKSVAQASLSALKQ 343 (388)
Q Consensus 329 ~~eeVa~eIl~~L~~ 343 (388)
+++++|++.+++
T Consensus 160 ---ei~~~i~~~l~~ 171 (172)
T PRK05057 160 ---VVANQIIHMLES 171 (172)
T ss_pred ---HHHHHHHHHHhh
Confidence 999999888753
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.96 E-value=7.5e-28 Score=218.96 Aligned_cols=163 Identities=25% Similarity=0.286 Sum_probs=146.1
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
.+.+.+++|+|+|++||||||+|+.||++||++|+|+|.++++..|+++.++|...|+..|++.|.+++..+.....+||
T Consensus 5 ~~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 5 RAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hhccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999987778999
Q ss_pred EecCCcccccccHHHHHhhcC-CcEEEEEcCccc--------c------ccCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486 261 ATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM--------D------ENSAKEEARRHVKDGKLGYSNADVVVKLQGW 325 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~--------D------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~ 325 (388)
+|||| .++.+++|++|+. +++|||++|++. . ..++.+.+++++++|.++|..+|++|++++.
T Consensus 85 ~~ggg---~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~ 161 (184)
T PRK13946 85 ATGGG---AFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVASRDV 161 (184)
T ss_pred ECCCC---CcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCC
Confidence 99999 5899999999975 899999999987 1 1345678899999999999999999999988
Q ss_pred CcccHHHHHHHHHHHHHHhhhcCC
Q 016486 326 DADHAKSVAQASLSALKQLIQSDK 349 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~~~~~~~~ 349 (388)
+++ ++++.|+..|+.+..++.
T Consensus 162 ~~~---~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 162 PKE---VMADEVIEALAAYLEKEE 182 (184)
T ss_pred CHH---HHHHHHHHHHHHhhcccc
Confidence 764 999999999998877553
No 9
>PRK00625 shikimate kinase; Provisional
Probab=99.96 E-value=7.1e-28 Score=219.45 Aligned_cols=151 Identities=21% Similarity=0.177 Sum_probs=128.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC----chhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~----sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt 262 (388)
++|+|+|||||||||+|+.||++||++|+|+|++|++.+|+ +++++|+.+|++.||+.|.++++.+.. .+.||+|
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~ 79 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence 47999999999999999999999999999999999999998 999999999999999999999998875 5789999
Q ss_pred cCCcccccccHHHHHhhcC-CcEEEEEcCccc-------cc----cCHHHHHHHHHHHhHhcccc-CcEEEEcCCC--Cc
Q 016486 263 LGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------DE----NSAKEEARRHVKDGKLGYSN-ADVVVKLQGW--DA 327 (388)
Q Consensus 263 GGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~----~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~--s~ 327 (388)
||| ++..+++++.|+. +++|||++|+++ .+ ....+.+.++|++|.+.|++ ||++|+++.. ++
T Consensus 80 GGg---~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~~~ 156 (173)
T PRK00625 80 GGG---TLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDHVAETS 156 (173)
T ss_pred CCC---ccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCCcccCC
Confidence 999 6999999999975 899999999877 11 11257899999999999998 9999887732 21
Q ss_pred -ccHHHHHHHHHHHH
Q 016486 328 -DHAKSVAQASLSAL 341 (388)
Q Consensus 328 -e~~eeVa~eIl~~L 341 (388)
..+.++++.++..|
T Consensus 157 ~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 157 SESLMRACQSFCTLL 171 (173)
T ss_pred CCCHHHHHHHHHHHh
Confidence 22346666665544
No 10
>PRK13947 shikimate kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=205.43 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=132.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ 267 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~ 267 (388)
+|+|+|+|||||||+|+.||++||++|+|.|.+++++.|+++.++|.+.|+..|++.|.++++.+....++||+||||
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g-- 80 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG-- 80 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC--
Confidence 799999999999999999999999999999999999999999999999999999999999999998777899999999
Q ss_pred cccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHH
Q 016486 268 GAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKS 332 (388)
Q Consensus 268 gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~ee 332 (388)
.+++++++..|++ +++|||+++++. . ..+..+.+.+++.+|.++|..||++|++++.+++ +
T Consensus 81 -~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~---~ 156 (171)
T PRK13947 81 -VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTID---E 156 (171)
T ss_pred -CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHH---H
Confidence 5899999998886 899999999886 1 1335678889999999999889999999988764 8
Q ss_pred HHHHHHH
Q 016486 333 VAQASLS 339 (388)
Q Consensus 333 Va~eIl~ 339 (388)
++++|..
T Consensus 157 i~~~I~~ 163 (171)
T PRK13947 157 VAEEIIK 163 (171)
T ss_pred HHHHHHH
Confidence 9988888
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.93 E-value=1.2e-24 Score=191.27 Aligned_cols=156 Identities=29% Similarity=0.365 Sum_probs=138.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG 263 (388)
.++++|+|+|++||||||+|+.||+.||++|+|+|.++++..|.++.+++.+.|+..|++.|.++++.+....++||++|
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g 81 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTG 81 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999987667899999
Q ss_pred CCcccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486 264 GGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA 327 (388)
Q Consensus 264 GG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~ 327 (388)
|| .++.+.+|+.|+. +++|||++|.+. + ..+..+.+.+++.+|.+.|.. +|++|++++.++
T Consensus 82 ~~---~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~ 158 (175)
T PRK00131 82 GG---AVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSP 158 (175)
T ss_pred CC---EeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCH
Confidence 88 5889999999954 899999999986 1 123456788999999999988 999999999886
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 016486 328 DHAKSVAQASLSALKQLI 345 (388)
Q Consensus 328 e~~eeVa~eIl~~L~~~~ 345 (388)
+ ++++.|++.|+.+.
T Consensus 159 ~---e~~~~I~~~v~~~~ 173 (175)
T PRK00131 159 E---EVVNEILEKLEAAW 173 (175)
T ss_pred H---HHHHHHHHHHHhhc
Confidence 5 99999999998653
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.92 E-value=1.1e-24 Score=193.77 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=130.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|++||||||+|+.||++||++|+|+|.+++...|+++.+++.+.|++.|++.|.++++.+. ..+.||+||||
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg- 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG- 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC-
Confidence 5799999999999999999999999999999999999999999999999999999999999997664 46789999999
Q ss_pred ccccccHHHHHhhcC-CcEEEEEcCccc-------c----------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486 267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------D----------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA 327 (388)
Q Consensus 267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D----------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~ 327 (388)
.+++++++++|++ +++|||+++++. . +.+..+.+.+.+++|.+.|.. ++++|+.+ .+
T Consensus 81 --~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~-~~- 156 (171)
T PRK03731 81 --IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT-QP- 156 (171)
T ss_pred --ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCC-CC-
Confidence 5999999999985 899999999886 1 123357788999999999998 88888876 33
Q ss_pred ccHHHHHHHHHHHHHH
Q 016486 328 DHAKSVAQASLSALKQ 343 (388)
Q Consensus 328 e~~eeVa~eIl~~L~~ 343 (388)
+++|+++|+..|++
T Consensus 157 --~e~v~~~i~~~l~~ 170 (171)
T PRK03731 157 --PSQVVSEILSALAQ 170 (171)
T ss_pred --HHHHHHHHHHHHhc
Confidence 45999999988764
No 13
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.91 E-value=8.6e-24 Score=207.82 Aligned_cols=155 Identities=23% Similarity=0.277 Sum_probs=137.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhc-CCCeEEEec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS-HVRAVVATL 263 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~-~~~~VVStG 263 (388)
++.+|+|+|++||||||+|+.||+.||++|||+|..+++..|+++.+++...|++.|+++|.+++.++.. ...+||+||
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G 211 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG 211 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999999999999998764 456899999
Q ss_pred CCcccccccHHHHHhhcC-CcEEEEEcCccc--------c-------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCc
Q 016486 264 GGQQGAAARADKWQHLYA-GFTVWLSQTEAM--------D-------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDA 327 (388)
Q Consensus 264 GG~~gav~r~enr~~L~~-g~VVyLd~~~e~--------D-------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~ 327 (388)
|| ++..+.++.++.. +++|||++|++. + .....+.+.+++++|.++|..||++|++++.++
T Consensus 212 gg---~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~~s~ 288 (309)
T PRK08154 212 GG---IVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSGLTV 288 (309)
T ss_pred Cc---hhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence 99 5888889887764 889999999986 1 123457899999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 016486 328 DHAKSVAQASLSALKQLI 345 (388)
Q Consensus 328 e~~eeVa~eIl~~L~~~~ 345 (388)
+ +++++|...++.++
T Consensus 289 e---e~~~~I~~~l~~~~ 303 (309)
T PRK08154 289 A---QSLARLRELVRPAL 303 (309)
T ss_pred H---HHHHHHHHHHHHHh
Confidence 5 99999999987654
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.91 E-value=1.1e-23 Score=219.25 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=142.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|+|||||||+|+.||+.||++|+|+|+++++..|+++.++|+++|+++||++|.++++++....+.||+||||
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg- 79 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG- 79 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc-
Confidence 4799999999999999999999999999999999999999999999999999999999999999998767899999999
Q ss_pred ccccccHHHHHhhcCCcEEEEEcCccc-------cc----cCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHH
Q 016486 267 QGAAARADKWQHLYAGFTVWLSQTEAM-------DE----NSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQ 335 (388)
Q Consensus 267 ~gav~r~enr~~L~~g~VVyLd~~~e~-------D~----~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~ 335 (388)
+++++++|+.|+++.+|||++++++ +. ....+++.++|++|++.|+++ ++|++++.+++ +++.
T Consensus 80 --vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~IDt~~~s~~---e~~~ 153 (488)
T PRK13951 80 --VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGIDTSKLNEW---ETTA 153 (488)
T ss_pred --cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEECCCCCHH---HHHH
Confidence 6999999999998779999999987 11 112467899999999999986 47999988763 5555
Q ss_pred HH-HHHHHHhhhcCCCCCCCccceeeccccCCC
Q 016486 336 AS-LSALKQLIQSDKKLPGKKSLYIRLGCRGDW 367 (388)
Q Consensus 336 eI-l~~L~~~~~~~~~l~g~k~lyi~~g~~g~~ 367 (388)
+| ++.+.. .... --.++|.++|..|...+.
T Consensus 154 ~iv~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~ 184 (488)
T PRK13951 154 LVVLEALDE-KEIS-TIEKPHLVKIILGGFKRV 184 (488)
T ss_pred HHHHHhhhc-ceee-ecCCceeEEEeccccccC
Confidence 55 333311 1101 136788899988887655
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.89 E-value=1.5e-22 Score=175.40 Aligned_cols=138 Identities=27% Similarity=0.359 Sum_probs=121.6
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ 267 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~ 267 (388)
+|+|+|++||||||+|+.||+.||++++|.|.++++..++++.+++...|++.|+..|.+++..+....+.||++|+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~-- 78 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGG-- 78 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCC--
Confidence 589999999999999999999999999999999999999999999999999999999999998888777899999988
Q ss_pred cccccHHHHHhhc-CCcEEEEEcCccc------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486 268 GAAARADKWQHLY-AGFTVWLSQTEAM------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDAD 328 (388)
Q Consensus 268 gav~r~enr~~L~-~g~VVyLd~~~e~------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e 328 (388)
.+....+++.+. .+++|||++|.+. . .....+.+.+++++|.++|++ ||++|++++.+++
T Consensus 79 -~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~~~~~~~~ 153 (154)
T cd00464 79 -AVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTDELSPE 153 (154)
T ss_pred -ccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCCC
Confidence 488887766655 4899999999886 1 011225799999999999999 9999999998764
No 16
>PRK09169 hypothetical protein; Validated
Probab=99.88 E-value=2.7e-23 Score=238.55 Aligned_cols=278 Identities=14% Similarity=0.063 Sum_probs=207.1
Q ss_pred cccCCCCcceeccccccccc---cc--cccCC-CCcccccccc-cccccccccccc-CCCCceeecCCCceEEEEEccCC
Q 016486 27 QHFSSPRHSVSIFKPIFISS---SL--HKSTN-VVPIKTHDRR-RFTCSNSLSSIP-ANTSQYEFSDGSAEIELRLQLGS 98 (388)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (388)
.....+||++.+|+..|... ++ +++.| .....+|+|. .-+-|+++.+.. .++.+|.| ||+|
T Consensus 1947 ~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~~Vkv~N~F~~~~~~YkGVNv~l~~s~~g~~f-----EIQF------ 2015 (2316)
T PRK09169 1947 LVNDALRYSVVLPPQTFVAGYRRILGALDEQGHTRTRVTNHFKKRGPAFKGINVTLDATGEGVRL-----EIQF------ 2015 (2316)
T ss_pred hccceeeEEEecCCccHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCccceEEeeecCCCCceE-----EEEe------
Confidence 46788999999999999887 22 56666 4555677675 457889999998 89999999 9999
Q ss_pred cccccccceeeccCCCeEEEEEcc-CCCcc----hh-hhhhhhhhccCCCCceeecchhH---HHHHhhc---cCCCCCC
Q 016486 99 LEIQSSKDIFVDADGTCLTVRVNR-SGSFI----TL-IETNQLFDKIKPTETIWYIDEDQ---LVINLKK---QDPELKW 166 (388)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l-~~~~~l~~~i~~~e~iw~~d~~~---~v~~~~~---~~~~~~w 166 (388)
|++.|.+++...|+.|..++-++ .|.+. .| -+..+.|..|.=..+++.|+|=+ .-..... ......=
T Consensus 2016 -HT~qSF~lK~r~H~lYkq~q~l~l~gas~e~~~~ll~~Ar~af~aV~vP~G~E~I~dw~~~~~~~~~~~~~~~~~~~~~ 2094 (2316)
T PRK09169 2016 -HTPQTFDLKERFHDLYKQAQALQLQGASSEQQRALLAPARDAFRAVPTPPGCEEIDDWEAEPPSTARPRAPAAAAPAAG 2094 (2316)
T ss_pred -cCHHHHHHHHHhHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcccCCCCcchhhccchhhcCccccccccccccccccc
Confidence 99999999999999999886554 33221 22 22445554444323344433211 0010000 0000000
Q ss_pred -chhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHH
Q 016486 167 -PDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 167 -p~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E 245 (388)
|. ..-.+.....+.+.+|+|+|+||+||||||+.||+.|++.|+|+|..|++..|++|.+||..+| .||+.|
T Consensus 2095 ~~~-----~~~~~~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~E 2167 (2316)
T PRK09169 2095 APR-----SPALAELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQA 2167 (2316)
T ss_pred ccc-----chhhHHHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHH
Confidence 00 0001122355678899999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc--c------------ccCH-------HHHHH
Q 016486 246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM--D------------ENSA-------KEEAR 303 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~--D------------~~d~-------~e~l~ 303 (388)
.+.++.+.. ..+||++||| ++..+++|..|.. |++|||+.+.+. + ..+. .+...
T Consensus 2168 aa~V~Dllr-~~vVLSTGGG---av~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl 2243 (2316)
T PRK09169 2168 AARVRDALR-WEVVLPAEGF---GAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSL 2243 (2316)
T ss_pred HHHHHHHhc-CCeEEeCCCC---cccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHH
Confidence 999999886 6799999999 6999999999985 999999999877 1 1222 15566
Q ss_pred HHHHHhHhcccc-CcEEEEcCCCCc
Q 016486 304 RHVKDGKLGYSN-ADVVVKLQGWDA 327 (388)
Q Consensus 304 ~l~~eR~~~Y~~-AD~vV~~d~~s~ 327 (388)
+++++|.+.|++ +|+.|+++..++
T Consensus 2244 ~Lk~eRhpLYEqvADl~V~~~~~~~ 2268 (2316)
T PRK09169 2244 RTKNKTHKLYEKLQDLEVAPARERD 2268 (2316)
T ss_pred HHHHHhHHHHHHhcCcccccCCCCc
Confidence 788999999988 999999887655
No 17
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.7e-16 Score=139.45 Aligned_cols=134 Identities=22% Similarity=0.151 Sum_probs=94.1
Q ss_pred EecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccCcHHHHHHH--HHHHHHHhc-CCCeEEEecCCc
Q 016486 192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEGSDSVVNGE--CDVLESLSS-HVRAVVATLGGQ 266 (388)
Q Consensus 192 IG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~Ge~~FRe~E--~~vL~~L~~-~~~~VVStGGG~ 266 (388)
||.+||||||||+.||++||++|||+|+++-.. .+|+-...+. ++++..++| .+.+.++.+ ....||+|+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~--DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS--- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN--DDDRWPWLEALGDAAASLAQKNKHVVIACS--- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC--cchhhHHHHHHHHHHHHhhcCCCceEEecH---
Confidence 699999999999999999999999999995322 2222222233 334444443 344445443 335899999
Q ss_pred ccccccHHHHHhhcC---C-cEEEEEcCccccccCHHHHHHHHHHHhHhccccCcE----------------EEEcCCCC
Q 016486 267 QGAAARADKWQHLYA---G-FTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADV----------------VVKLQGWD 326 (388)
Q Consensus 267 ~gav~r~enr~~L~~---g-~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD~----------------vV~~d~~s 326 (388)
.++..+|+.|+. + .+|||+.+. +.+.+++..|+.||+.+++ +|.++-..
T Consensus 76 ---ALKr~YRD~LR~~~~~~~Fv~L~g~~--------~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~ 144 (161)
T COG3265 76 ---ALKRSYRDLLREANPGLRFVYLDGDF--------DLILERMKARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQ 144 (161)
T ss_pred ---HHHHHHHHHHhccCCCeEEEEecCCH--------HHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCC
Confidence 678899999995 3 377777775 5688999999999976531 34444333
Q ss_pred cccHHHHHHHHHHHHHH
Q 016486 327 ADHAKSVAQASLSALKQ 343 (388)
Q Consensus 327 ~e~~eeVa~eIl~~L~~ 343 (388)
+ +++|+++++.+|+.
T Consensus 145 ~--~e~vv~~~~~~l~~ 159 (161)
T COG3265 145 P--PEEVVAQALAWLKE 159 (161)
T ss_pred C--HHHHHHHHHHHHhc
Confidence 3 67999999998875
No 18
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.64 E-value=5.2e-16 Score=141.15 Aligned_cols=154 Identities=11% Similarity=0.059 Sum_probs=110.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHH---------------
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE--------------- 250 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~--------------- 250 (388)
|..|+|+|++|||||||+++|+..++..|++.|..+.+...+...+++...+++.|+.+|...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 56899999999999999999999999999999998887666666677777788888887655442
Q ss_pred --HHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc-------cccCHHHHHHHHHHHhHhccccCcEEE
Q 016486 251 --SLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------DENSAKEEARRHVKDGKLGYSNADVVV 320 (388)
Q Consensus 251 --~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~~d~~e~l~~l~~eR~~~Y~~AD~vV 320 (388)
...+.+..||+.|++ .....+++.+.. ..+|||++|.++ ......+.+.+++ +|.+.|..+|++|
T Consensus 82 ~~~~l~~g~~VI~~G~~----~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl-~r~~~~~~ad~~v 156 (186)
T PRK10078 82 IDLWLHAGFDVLVNGSR----AHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARL-ARAARYQPQDCHT 156 (186)
T ss_pred HHHHHhCCCEEEEeChH----HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHH-HHhhhhccCCEEE
Confidence 122234567777665 444566666654 679999999887 1122234566666 4677888888444
Q ss_pred EcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 321 KLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 321 ~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
..++.++ ++++++|...|..-.+.
T Consensus 157 i~~~~s~---ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 157 LNNDGSL---RQSVDTLLTLLHLSQKE 180 (186)
T ss_pred EeCCCCH---HHHHHHHHHHHhhcCcc
Confidence 3354444 59999998888655443
No 19
>PRK03839 putative kinase; Provisional
Probab=99.64 E-value=1.2e-15 Score=137.32 Aligned_cols=140 Identities=17% Similarity=0.061 Sum_probs=94.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
+.|+|+|+|||||||+|+.||+++|++|+|+|+++++. .+.+++...++..|+.+|..+++.+. . ..||.+|.-
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~vIidG~~- 74 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK---GIGEEKDDEMEIDFDKLAYFIEEEFK-E-KNVVLDGHL- 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc---CCcccCChhhhcCHHHHHHHHHHhcc-C-CCEEEEecc-
Confidence 36999999999999999999999999999999998763 46677777888899999998876442 2 335666621
Q ss_pred ccccccHHHHHhhcCCcEEEEEcCccc-------cccC---HHHHHHHHHHHh--Hhcccc--CcEEEEcCCCCcccHHH
Q 016486 267 QGAAARADKWQHLYAGFTVWLSQTEAM-------DENS---AKEEARRHVKDG--KLGYSN--ADVVVKLQGWDADHAKS 332 (388)
Q Consensus 267 ~gav~r~enr~~L~~g~VVyLd~~~e~-------D~~d---~~e~l~~l~~eR--~~~Y~~--AD~vV~~d~~s~e~~ee 332 (388)
...+..+++|||++++++ .... ..+.....+.+. ...|.. .-++|++++.++ ++
T Consensus 75 ---------~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~---ee 142 (180)
T PRK03839 75 ---------SHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTP---EE 142 (180)
T ss_pred ---------ccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCH---HH
Confidence 112335899999999987 1111 011111111110 012322 335677766655 49
Q ss_pred HHHHHHHHHHHh
Q 016486 333 VAQASLSALKQL 344 (388)
Q Consensus 333 Va~eIl~~L~~~ 344 (388)
|+++|...|+..
T Consensus 143 v~~~I~~~l~~~ 154 (180)
T PRK03839 143 VVEEILELIKSG 154 (180)
T ss_pred HHHHHHHHHhcC
Confidence 999999888754
No 20
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.63 E-value=8.2e-16 Score=137.93 Aligned_cols=147 Identities=22% Similarity=0.119 Sum_probs=101.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHH-----HHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD-----VLESLS 253 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~-----vL~~L~ 253 (388)
.++..|+|+|++||||||+++.|++.|+ ..++|+|.+.+. +...|.+.+.+.|.. +.+.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~ 75 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI---------LGHYGYDKQSRIEMALKRAKLAKFLA 75 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh---------cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999996 788998886432 222233333333321 222343
Q ss_pred cCCCeEEEecCCccccc--ccHHHHHhhcCCcEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhcccc-CcEEEE
Q 016486 254 SHVRAVVATLGGQQGAA--ARADKWQHLYAGFTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYSN-ADVVVK 321 (388)
Q Consensus 254 ~~~~~VVStGGG~~gav--~r~enr~~L~~g~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~~-AD~vV~ 321 (388)
..+..||++|++ .. .+..++..+...++|||++++++ +. ....+.+.+++..|.+.|.. ||++|+
T Consensus 76 ~~g~~VI~~~~~---~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~ 152 (176)
T PRK05541 76 DQGMIVIVTTIS---MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVID 152 (176)
T ss_pred hCCCEEEEEeCC---cHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEe
Confidence 455688888876 23 44455555555789999999987 11 11224566778888999977 999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHHh
Q 016486 322 LQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 322 ~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+++.. ++++++++|+..++..
T Consensus 153 ~~~~~--~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 153 NSCRT--SLDEKVDLILNKLKLR 173 (176)
T ss_pred CCCCC--CHHHHHHHHHHHHHHh
Confidence 98632 2568999998888654
No 21
>PRK04182 cytidylate kinase; Provisional
Probab=99.62 E-value=5.1e-15 Score=131.13 Aligned_cols=148 Identities=21% Similarity=0.249 Sum_probs=95.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH---HhcCchhhhhhccCcHHH---HHHHHHHHHHHh-cCCCeE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET---FAKQTIDSWMLAEGSDSV---VNGECDVLESLS-SHVRAV 259 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~---~~g~sI~eif~~~Ge~~F---Re~E~~vL~~L~-~~~~~V 259 (388)
+.|+|+|++||||||+|+.||+.||++++|+|+++.+ ..|+++.+++. .++..+ +.++..+. .+. ..+.+|
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~V 78 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDRRQL-EIAEKEDNVV 78 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHHHHH-HHHhcCCCEE
Confidence 4699999999999999999999999999998876655 44667776653 344333 34443333 444 444555
Q ss_pred EEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccC---HHHHHH-----------HHHHHhHhccccCc
Q 016486 260 VATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENS---AKEEAR-----------RHVKDGKLGYSNAD 317 (388)
Q Consensus 260 VStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d---~~e~l~-----------~l~~eR~~~Y~~AD 317 (388)
|. |.+. +...++ ..+++|||++|++. +..+ ....+. .++..|.+.|..||
T Consensus 79 i~-g~~~-~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d 150 (180)
T PRK04182 79 LE-GRLA-GWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYD 150 (180)
T ss_pred EE-Eeec-ceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 53 3210 022221 14789999999887 1111 112222 22222233356699
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 318 VVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 318 ~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
++|+++..+++ ++++.|...++.+..+
T Consensus 151 ~~idt~~~~~~---~~~~~I~~~~~~~~~~ 177 (180)
T PRK04182 151 LVINTSRWDPE---GVFDIILTAIDKLLKA 177 (180)
T ss_pred EEEECCCCCHH---HHHHHHHHHHHHHhcc
Confidence 99999998765 9999999999876543
No 22
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.1e-15 Score=135.45 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=102.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHH-----HHHhcC-chhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ETFAKQ-TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI-----E~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
-.|+++|.+||||||+|++|+++||++|+|+|+++ |++... ++. +++.+.|...+-..+.+.+.+.+.+|+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEE
Confidence 47999999999999999999999999999999995 343322 222 345566666666667777777778999
Q ss_pred EecCCcccccccHHHHHhhcC------------C--cEEEEEcCccccccCHHHHHHHHHHHhHhccccCc---------
Q 016486 261 ATLGGQQGAAARADKWQHLYA------------G--FTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNAD--------- 317 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~~------------g--~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD--------- 317 (388)
||+ .++..+|+.|++ . .+|||.++. +.+.+++..|..+|+.+|
T Consensus 90 ACS------aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~--------evi~~Rl~~R~gHFMp~~lleSQf~~L 155 (191)
T KOG3354|consen 90 ACS------ALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASF--------EVILKRLKKRKGHFMPADLLESQFATL 155 (191)
T ss_pred EhH------HHHHHHHHHHHhhcccCCccCCccceEEEeeeeccH--------HHHHHHHhhcccccCCHHHHHHHHHhc
Confidence 999 677888888864 1 367777654 678899999999987653
Q ss_pred ----------EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 318 ----------VVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 318 ----------~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+.|++...+ ++++++.|++.+..
T Consensus 156 E~p~~~e~div~isv~~~~---~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 156 EAPDADEEDIVTISVKTYS---VEEIVDTIVKMVAL 188 (191)
T ss_pred cCCCCCccceEEEeeccCC---HHHHHHHHHHHHHh
Confidence 235555544 45888888887653
No 23
>PRK14532 adenylate kinase; Provisional
Probab=99.56 E-value=1.8e-14 Score=130.37 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=98.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
++|+|+|+|||||||+|+.||+++|+.+|++|+++++.. |+.+.++++ .|+..+.++-..++...... +
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~----~ 75 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPE----A 75 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhC----c
Confidence 469999999999999999999999999999999998753 345667776 47777776666665544321 1
Q ss_pred EecCCcccccc-----cHH---HH-HhhcC-----CcEEEEEcCccc--c-----------c----cCHHHHHHHHHHHh
Q 016486 261 ATLGGQQGAAA-----RAD---KW-QHLYA-----GFTVWLSQTEAM--D-----------E----NSAKEEARRHVKDG 309 (388)
Q Consensus 261 StGGG~~gav~-----r~e---nr-~~L~~-----g~VVyLd~~~e~--D-----------~----~d~~e~l~~l~~eR 309 (388)
.+++| +++ +.. .+ +.+.. ..+|||++|.++ + . .....++...++++
T Consensus 76 ~~~~g---~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~ 152 (188)
T PRK14532 76 EAAGG---AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQT 152 (188)
T ss_pred CccCc---EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 23333 122 222 22 23321 369999999887 0 0 11345666666766
Q ss_pred H---hccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 310 K---LGYSNADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 310 ~---~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
. ++|...+.++.+++..+ +++|+++|...|.
T Consensus 153 ~~i~~~y~~~~~~~~id~~~~--~eev~~~I~~~l~ 186 (188)
T PRK14532 153 APLLPYYAGQGKLTEVDGMGS--IEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHh
Confidence 4 56877667777876432 5699999988875
No 24
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.53 E-value=8.4e-15 Score=155.48 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=110.1
Q ss_pred CCCCchhh---hhhHHhhhhhhh-ccCCCeEEEEecCCCchHHHHHHHHHhcCC------cceechhHHHHHhcCchhhh
Q 016486 163 ELKWPDIV---ESWESLTAGSMQ-LLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSW 232 (388)
Q Consensus 163 ~~~wp~~~---~~W~sl~~~~~~-~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~------~fID~D~lIE~~~g~sI~ei 232 (388)
++..|.|. |.|..|+....+ ..++..|+|+|+|||||||||+.||++|+. .++|+|.+...+.
T Consensus 365 G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~------- 437 (568)
T PRK05537 365 GLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS------- 437 (568)
T ss_pred CCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-------
Confidence 34445443 357666654433 335678999999999999999999999996 9999998744332
Q ss_pred hhccCcHHHHHHHHHHH--------HHHhcCCCeEE-EecCCcccccccHHHHHhhcC-C--cEEEEEcCccc----cc-
Q 016486 233 MLAEGSDSVVNGECDVL--------ESLSSHVRAVV-ATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM----DE- 295 (388)
Q Consensus 233 f~~~Ge~~FRe~E~~vL--------~~L~~~~~~VV-StGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~- 295 (388)
|+..|++.|++.. ..+.+.+..|| +..... ...++.+++.+++ + ++|||+++.++ +.
T Consensus 438 ----ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~--~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr 511 (568)
T PRK05537 438 ----SELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPY--RATRREVREMIEAYGGFIEVHVATPLEVCEQRDRK 511 (568)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCch--HHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccc
Confidence 2334444443321 12222233333 222111 1234678888875 5 58999999887 11
Q ss_pred ----cCHHHHHHHHHHHhHhccc-c-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 296 ----NSAKEEARRHVKDGKLGYS-N-ADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 296 ----~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
....+.+..++.+|.++|. . ||++|++++.+++ +++++|+..|+.
T Consensus 512 ~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~~~s~~---eiv~~Il~~L~~ 562 (568)
T PRK05537 512 GLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVTPD---ECAHKILLYLEE 562 (568)
T ss_pred cccccchhchhhccccccccccCCCCCcEEEECCCCCHH---HHHHHHHHHHHH
Confidence 1224567888999999996 4 9999999987654 999999988864
No 25
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.52 E-value=1.6e-13 Score=124.94 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=103.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhh--hhccCcHHHHHHHHHHHHHHhcCCCeEEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW--MLAEGSDSVVNGECDVLESLSSHVRAVVA 261 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~ei--f~~~Ge~~FRe~E~~vL~~L~~~~~~VVS 261 (388)
+.|.|.|++|||||||++.||+.||+++|.+..++.+++ ||++.++ +++...+.-.++.+...+-. .++++||-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a-~~~nvVle 79 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELA-KEGNVVLE 79 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHH-HcCCeEEh
Confidence 468999999999999999999999999999988877664 7898887 35666666666666555433 35677773
Q ss_pred -ecCCcccccccHHHHHhh-cCCcEEEEEcCccc--------cccCHHHHHHHHHHHhH--------hcc-------ccC
Q 016486 262 -TLGGQQGAAARADKWQHL-YAGFTVWLSQTEAM--------DENSAKEEARRHVKDGK--------LGY-------SNA 316 (388)
Q Consensus 262 -tGGG~~gav~r~enr~~L-~~g~VVyLd~~~e~--------D~~d~~e~l~~l~~eR~--------~~Y-------~~A 316 (388)
-.+| |-.. ...+.|||.+|.++ ++.+ .+...+...+|+ .+| .-.
T Consensus 80 grLA~----------Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~-~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiy 148 (179)
T COG1102 80 GRLAG----------WIVREYADLKIWLKAPLEVRAERIAKREGID-VDEALAETVEREESEKKRYKKIYGIDIDDLSIY 148 (179)
T ss_pred hhhHH----------HHhccccceEEEEeCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCccceee
Confidence 2332 3322 24889999999988 2333 223333333343 233 346
Q ss_pred cEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 317 DVVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 317 D~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
|++|+++.++++ +|+..+..++.....+
T Consensus 149 DLVinTs~~~~~---~v~~il~~aid~~~~~ 176 (179)
T COG1102 149 DLVINTSKWDPE---EVFLILLDAIDALSIK 176 (179)
T ss_pred EEEEecccCCHH---HHHHHHHHHHHhhccc
Confidence 899999999975 8888888888776544
No 26
>PRK13975 thymidylate kinase; Provisional
Probab=99.49 E-value=5.7e-14 Score=127.24 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=96.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHHHH----h------cCchhhhhhccCcHHHHHHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----A------KQTIDSWMLAEGSDSVVNGECDVLESLS 253 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE~~----~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~ 253 (388)
++.|+|.|++||||||+++.||++|+ +.+.++|..+.+. . ..++..+|...+++.|+++|..+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~--- 78 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK--- 78 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 47899999999999999999999999 6667776555432 1 1245567888888888876654432
Q ss_pred cCCCeEEE-----------ecCCcccccc---cHHHHHhhcCCcEEEEEcCccc-------cc------cCHHHHHHHHH
Q 016486 254 SHVRAVVA-----------TLGGQQGAAA---RADKWQHLYAGFTVWLSQTEAM-------DE------NSAKEEARRHV 306 (388)
Q Consensus 254 ~~~~~VVS-----------tGGG~~gav~---r~enr~~L~~g~VVyLd~~~e~-------D~------~d~~e~l~~l~ 306 (388)
..||+ +++|. .. ...++..++.+++|||++++++ .. .+..+++.+.|
T Consensus 79 ---~~vi~DRy~~S~~a~~~~~g~---~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y 152 (196)
T PRK13975 79 ---RDVVCDRYVYSSIAYQSVQGI---DEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKY 152 (196)
T ss_pred ---CEEEEECchhHHHHHhcccCC---CHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 23443 34441 21 1122223345899999999987 11 11223455555
Q ss_pred HHhHh---cccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 307 KDGKL---GYSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 307 ~eR~~---~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
.++.. +|.. +.++|++++.++ ++|+++|.+.|...+
T Consensus 153 ~~~~~~~~~~~~~~~~~Id~~~~~~---eev~~~I~~~i~~~~ 192 (196)
T PRK13975 153 LELANNEKFMPKYGFIVIDTTNKSI---EEVFNEILNKIKDKI 192 (196)
T ss_pred HHHHhhcccCCcCCEEEEECCCCCH---HHHHHHHHHHHHHhC
Confidence 55543 2333 467788876665 499999999887654
No 27
>PRK14530 adenylate kinase; Provisional
Probab=99.45 E-value=1.3e-12 Score=121.47 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=73.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcH---------HHHHHHHHHHHHHh-c
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD---------SVVNGECDVLESLS-S 254 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~---------~FRe~E~~vL~~L~-~ 254 (388)
.+.+|+|+|+|||||||+|+.||+.+|+++|++|+++++..++++.++....|.. ...+.+..+++... .
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999998876665554333321 22234555555543 3
Q ss_pred CCCeEEEecCCcccccccHHHHHhhc----CCcEEEEEcCccc
Q 016486 255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAM 293 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e~ 293 (388)
....||. | . ....+..+.|. .+++|||++|.+.
T Consensus 82 ~~~~Ild-G-~----pr~~~q~~~l~~~~~~d~vI~Ld~~~~~ 118 (215)
T PRK14530 82 ADGFVLD-G-Y----PRNLEQAEYLESITDLDVVLYLDVSEEE 118 (215)
T ss_pred CCCEEEc-C-C----CCCHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 3456665 3 2 45555555553 3789999999866
No 28
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.42 E-value=1.7e-12 Score=114.66 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=92.2
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHH-----H-hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~-----~-~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt 262 (388)
|+|+|++||||||+++.|++.+|+.++|+|++... . .|..+ ....++.+++.++..+...+.....+||++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~ 77 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPL---NDDDRWPWLQNLNDASTAAAAKNKVGIITC 77 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCC---ChhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999999999999999999999999998432 2 12222 133456777777776666665555568887
Q ss_pred cCCcccccccHHHHHhhcC-C---cEEEEEcCccc----c---c--cCHHHHHHHHHHH-hHhccccCc-EEEEcCCCCc
Q 016486 263 LGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM----D---E--NSAKEEARRHVKD-GKLGYSNAD-VVVKLQGWDA 327 (388)
Q Consensus 263 GGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~----D---~--~d~~e~l~~l~~e-R~~~Y~~AD-~vV~~d~~s~ 327 (388)
+ ..++.+++.++. + .+|||++|.++ . + ....+.+...+.+ +.+.+.+++ ++|++++.
T Consensus 78 t------~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~~~-- 149 (163)
T TIGR01313 78 S------ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDIDQP-- 149 (163)
T ss_pred c------ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECCCC--
Confidence 6 356677776663 2 47999999877 0 1 1123455555543 233344444 44555543
Q ss_pred ccHHHHHHHHHHHH
Q 016486 328 DHAKSVAQASLSAL 341 (388)
Q Consensus 328 e~~eeVa~eIl~~L 341 (388)
+++++++|...|
T Consensus 150 --~~~~~~~~~~~~ 161 (163)
T TIGR01313 150 --LEGVEEDCIAVV 161 (163)
T ss_pred --HHHHHHHHHHHH
Confidence 458888887765
No 29
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.40 E-value=8.4e-13 Score=121.39 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=95.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeE
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~V 259 (388)
++..|+|+|++||||||+++.|+..| +..++|+|.+.....+. +. +..++..+.++.+. ++...+...+..|
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~-~~-~~~~~~~~~~~~l~-~~a~~~~~~G~~V 99 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD-LG-FSDADRKENIRRVG-EVAKLMVDAGLVV 99 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc-CC-cCcccHHHHHHHHH-HHHHHHhhCCCEE
Confidence 57889999999999999999999987 46889999887554431 11 11122223333332 2333444445566
Q ss_pred EEecCCcccccccHHHHHhhcC-Cc-EEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc--c-CcEEEEcCCC
Q 016486 260 VATLGGQQGAAARADKWQHLYA-GF-TVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS--N-ADVVVKLQGW 325 (388)
Q Consensus 260 VStGGG~~gav~r~enr~~L~~-g~-VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~--~-AD~vV~~d~~ 325 (388)
|++.... ....+...++++.+ ++ +|||++|.+. +.... .+.+..++.+|.+ |+ . ||++|++++.
T Consensus 100 I~~~~~~-~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Idt~~~ 177 (198)
T PRK03846 100 LTAFISP-HRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLDTGEQ 177 (198)
T ss_pred EEEeCCC-CHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEECCCC
Confidence 6433220 01234445556654 66 7999999876 11000 1223345567777 87 6 8999999887
Q ss_pred CcccHHHHHHHHHHHHHH
Q 016486 326 DADHAKSVAQASLSALKQ 343 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~~ 343 (388)
+++ +++++|++.|+.
T Consensus 178 ~~~---~vv~~Il~~l~~ 192 (198)
T PRK03846 178 LVT---NLVEQLLDYLRQ 192 (198)
T ss_pred CHH---HHHHHHHHHHHH
Confidence 754 999999998864
No 30
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.38 E-value=4.2e-12 Score=113.85 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=94.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCCe
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRA 258 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~~ 258 (388)
++..|+|+|++||||||+++.|+..|. +.++|+|.+.+..... + .+. +..+..++.+. .+.+.+...+ .
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~-~--~~~~~~r~~~~~~~~-~~a~~~~~~g-~ 77 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKG-L--GFSKEDRDTNIRRIG-FVANLLTRHG-V 77 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcC-C--CCChhhHHHHHHHHH-HHHHHHHhCC-C
Confidence 577899999999999999999999983 6789999886554321 1 121 22333444433 2222333333 3
Q ss_pred EEEecCCcccccccHHHHHhhcC----CcEEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc-c-CcEEEEcC
Q 016486 259 VVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS-N-ADVVVKLQ 323 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~-~-AD~vV~~d 323 (388)
+|.+++. ......|+.++. ..+|||++|.++ +.... .+.+..++.+|.++|. . ||++|+++
T Consensus 78 ~vi~~~~----~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~ 153 (175)
T PRK00889 78 IVLVSAI----SPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTD 153 (175)
T ss_pred EEEEecC----CCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECC
Confidence 4444433 223455555542 569999999876 11110 1123346678899997 4 89999999
Q ss_pred CCCcccHHHHHHHHHHHHHH
Q 016486 324 GWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 324 ~~s~e~~eeVa~eIl~~L~~ 343 (388)
+.++ ++++++|++.|..
T Consensus 154 ~~~~---~~~~~~i~~~l~~ 170 (175)
T PRK00889 154 LESL---EESVDKVLQKLEE 170 (175)
T ss_pred CCCH---HHHHHHHHHHHHH
Confidence 7765 5999999999864
No 31
>PRK06762 hypothetical protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=109.32 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG 263 (388)
++.|+|+|++||||||+++.|++.+ ++.+++.|.+.....+.. ...+......++ .+.+.....+..||..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVK-----DGPGNLSIDLIE-QLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcccc-----CCCCCcCHHHHH-HHHHHHHhCCCEEEEch
Confidence 4679999999999999999999999 577889998876544221 111111121122 23333334455666655
Q ss_pred CCcccccccHH---HHHhhcC-----CcEEEEEcCccc--------cc--cCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486 264 GGQQGAAARAD---KWQHLYA-----GFTVWLSQTEAM--------DE--NSAKEEARRHVKDGKLGYSNADVVVKLQGW 325 (388)
Q Consensus 264 GG~~gav~r~e---nr~~L~~-----g~VVyLd~~~e~--------D~--~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~ 325 (388)
. ..... .++.|.. ..+|||++|.++ +. ....+.++.+|++|...|. ++.++++++.
T Consensus 76 ~-----~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~ 149 (166)
T PRK06762 76 I-----LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV-IGETIFTDNL 149 (166)
T ss_pred h-----hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC-CCeEEecCCC
Confidence 2 12222 2333321 269999999887 11 2346889999999998763 7788888887
Q ss_pred CcccHHHHHHHHHHHHH
Q 016486 326 DADHAKSVAQASLSALK 342 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~ 342 (388)
++ ++|+++|+..+.
T Consensus 150 ~~---~~v~~~i~~~~~ 163 (166)
T PRK06762 150 SL---KDIFDAILTDIG 163 (166)
T ss_pred CH---HHHHHHHHHHhc
Confidence 65 499999998764
No 32
>PRK06217 hypothetical protein; Validated
Probab=99.32 E-value=1.9e-11 Score=111.04 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=64.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|++||||||+|+.||+.||++++|+|+++++..+.+ +...+...++ +..+++.+......||. |+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~vi~-G~~- 73 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP----FTTKRPPEER--LRLLLEDLRPREGWVLS-GSA- 73 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC----ccccCCHHHH--HHHHHHHHhcCCCEEEE-ccH-
Confidence 569999999999999999999999999999999998654432 1112333332 34555555555567777 322
Q ss_pred ccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486 267 QGAAARADKWQHLY-AGFTVWLSQTEAM 293 (388)
Q Consensus 267 ~gav~r~enr~~L~-~g~VVyLd~~~e~ 293 (388)
.. .....+. .+.+|||++|.++
T Consensus 74 ----~~-~~~~~~~~~d~~i~Ld~~~~~ 96 (183)
T PRK06217 74 ----LG-WGDPLEPLFDLVVFLTIPPEL 96 (183)
T ss_pred ----HH-HHHHHHhhCCEEEEEECCHHH
Confidence 21 1112222 3889999999887
No 33
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.32 E-value=3.1e-11 Score=106.27 Aligned_cols=142 Identities=21% Similarity=0.295 Sum_probs=84.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhh--ccCcHHHHHHHHHHHHHHh-cCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWML--AEGSDSVVNGECDVLESLS-SHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~--~~Ge~~FRe~E~~vL~~L~-~~~~~VV 260 (388)
+.|+|.|++||||||+|+.||+.||++++|.|+++.+.+ |.++..+.. .......+.+...+ ..+. ..+.+||
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~Vi 79 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRI-HEIALKEKNVVL 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHH-HHHHhcCCCEEE
Confidence 369999999999999999999999999999988876654 344443321 11222222222223 3333 4445565
Q ss_pred EecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccC---HHHHHHHHHHHhHhcc-----------ccCcE
Q 016486 261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENS---AKEEARRHVKDGKLGY-----------SNADV 318 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d---~~e~l~~l~~eR~~~Y-----------~~AD~ 318 (388)
.|.+. +...+ -...++|||++|.+. ++.+ ..+.+.+.-..|...| ...|+
T Consensus 80 -~g~~~-~~~~~------~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl 151 (171)
T TIGR02173 80 -ESRLA-GWIVR------EYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDL 151 (171)
T ss_pred -Eeccc-ceeec------CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccE
Confidence 34220 01110 013589999999887 1222 2223333333343333 22589
Q ss_pred EEEcCCCCcccHHHHHHHHHHHH
Q 016486 319 VVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 319 vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
+|+++..+++ + ++.|...+
T Consensus 152 ~i~t~~~~~~---~-~~~i~~~~ 170 (171)
T TIGR02173 152 VINTSNWDPN---N-VDIILDAL 170 (171)
T ss_pred EEECCCCCHH---H-HHHHHHHh
Confidence 9999999875 7 77776654
No 34
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.30 E-value=1.9e-11 Score=109.60 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=83.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCc----cee------------------chhHHHHHhcCchhhhhhccCcH-HHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYT----PLS------------------TKELLETFAKQTIDSWMLAEGSD-SVV 242 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~----fID------------------~D~lIE~~~g~sI~eif~~~Ge~-~FR 242 (388)
+..|+|+|++||||||+++.|+..++.. |+. .+++........+..++...+.. ...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 3568999999999999999999988632 221 11111111111122111111100 011
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------c-ccCHHHHHHHHHHHhHhccc
Q 016486 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------D-ENSAKEEARRHVKDGKLGYS 314 (388)
Q Consensus 243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D-~~d~~e~l~~l~~eR~~~Y~ 314 (388)
..+......+..||++|++ ......++.+....+|||+++.+. . ..+ .+.+.+++ .|...|.
T Consensus 81 ----~~i~~~~~~g~~vv~~g~~----~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~-~~~~~~rl-~~~~~~~ 150 (179)
T TIGR02322 81 ----AEIDQWLEAGDVVVVNGSR----AVLPEARQRYPNLLVVNITASPDVLAQRLAARGRES-REEIEERL-ARSARFA 150 (179)
T ss_pred ----HHHHHHHhcCCEEEEECCH----HHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCC-HHHHHHHH-HHHhhcc
Confidence 1122333345678888876 344556665556789999999877 1 223 35566666 4667775
Q ss_pred --cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 315 --NADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 315 --~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
.+|+++..+..+ +++++.+|.+.+.
T Consensus 151 ~~~~~~~vi~~~~~---~ee~~~~i~~~l~ 177 (179)
T TIGR02322 151 AAPADVTTIDNSGS---LEVAGETLLRLLR 177 (179)
T ss_pred cccCCEEEEeCCCC---HHHHHHHHHHHHc
Confidence 488775544444 4588888887765
No 35
>PRK01184 hypothetical protein; Provisional
Probab=99.29 E-value=8.7e-11 Score=105.95 Aligned_cols=148 Identities=9% Similarity=0.036 Sum_probs=85.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhccCcHHHHHHHH--------HHHHHHhc-CC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC--------DVLESLSS-HV 256 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~Ge~~FRe~E~--------~vL~~L~~-~~ 256 (388)
+.|+|+|+|||||||+++ +++.+|++++++|+++.+.. +..+..+....|+..++..+. .+...+.. ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 468999999999999998 78999999999988877664 222332333333333322221 11222222 23
Q ss_pred CeEEEecCCcccccccHHHHHh----hc-CCcEEEEEcCccc--------cc-cC--HHHHHHHHHHHh-----Hhcccc
Q 016486 257 RAVVATLGGQQGAAARADKWQH----LY-AGFTVWLSQTEAM--------DE-NS--AKEEARRHVKDG-----KLGYSN 315 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~----L~-~g~VVyLd~~~e~--------D~-~d--~~e~l~~l~~eR-----~~~Y~~ 315 (388)
..||..| .......+. +. ...+|||++|.+. +. .+ ..+.+.++.+.. ...+..
T Consensus 81 ~~vvidg------~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ 154 (184)
T PRK01184 81 EVVVIDG------VRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIAL 154 (184)
T ss_pred CcEEEeC------CCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHh
Confidence 4566555 122222333 32 2479999999987 11 11 134444444332 124566
Q ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 316 ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 316 AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
||++|++++ + .+++..++...++.+.
T Consensus 155 ad~vI~N~~-~---~~~l~~~v~~~~~~~~ 180 (184)
T PRK01184 155 ADYMIVNDS-T---LEEFRARVRKLLERIL 180 (184)
T ss_pred cCEEEeCCC-C---HHHHHHHHHHHHHHHh
Confidence 999998665 3 3477777777666543
No 36
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.25 E-value=3.5e-12 Score=128.09 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=73.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCc------ceechhHH-----HHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCC
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~------fID~D~lI-----E~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~ 257 (388)
++|+|+|||||||+|+.|++.|+.. ++|.|++| +...|++++++| ..||+. +.++.. +
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~----i~~~le--~ 70 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQE----LLKYLE--H 70 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHH----HHHHHH--H
Confidence 6899999999999999999998744 99999999 888999999988 578843 333332 5
Q ss_pred eEEEecCCcccccc----------cHHHHHhhcC-CcEEEEEcCccc
Q 016486 258 AVVATLGGQQGAAA----------RADKWQHLYA-GFTVWLSQTEAM 293 (388)
Q Consensus 258 ~VVStGGG~~gav~----------r~enr~~L~~-g~VVyLd~~~e~ 293 (388)
.|+|+||| +.+ .++|+..|+. |++|||+++.+.
T Consensus 71 ~v~a~~~g---~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~ 114 (340)
T TIGR03575 71 FLVAVING---SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQ 114 (340)
T ss_pred HHHHhcCc---ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHH
Confidence 68899998 566 4455588875 999999999865
No 37
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.23 E-value=3.1e-11 Score=130.23 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=116.0
Q ss_pred eeecchhHHHHHhh---------------ccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 145 IWYIDEDQLVINLK---------------KQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 145 iw~~d~~~~v~~~~---------------~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
||.+||++++|.+- ...+.+.||+..+.+.+|.. .+.-+...|.|.|++||||||+|+.||++
T Consensus 388 v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~F~~~l~~Lg~--~~~~~~~~i~i~g~~~~gks~~~~~l~~~ 465 (661)
T PRK11860 388 IHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPDYFEALFSVAQ--ADADRVPVICIDGPTASGKGTVAARVAEA 465 (661)
T ss_pred ccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCChHHHHHHhcC--CcccCcceEEeeCCCCCCHHHHHHHHHHH
Confidence 89999999998882 24478999999676667662 22223568999999999999999999999
Q ss_pred cCCcceechhHHHHHh------cCchhh---hhh---c------------c---------------------CcHHHHHH
Q 016486 210 LGYTPLSTKELLETFA------KQTIDS---WML---A------------E---------------------GSDSVVNG 244 (388)
Q Consensus 210 LG~~fID~D~lIE~~~------g~sI~e---if~---~------------~---------------------Ge~~FRe~ 244 (388)
||++|+|+|.+....+ |.++.+ +.+ . + --..+|+.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~ 545 (661)
T PRK11860 466 LGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAA 545 (661)
T ss_pred hCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHH
Confidence 9999999999977652 222211 100 0 0 01122322
Q ss_pred HHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCcccc-----------c-cCHHHHHHHHHHHhHh
Q 016486 245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMD-----------E-NSAKEEARRHVKDGKL 311 (388)
Q Consensus 245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~D-----------~-~d~~e~l~~l~~eR~~ 311 (388)
-....+++....+ ||.-|=- -.+-.+. ..+-|||++++++. + ....+++.+-+.+|..
T Consensus 546 l~~~qr~~~~~~~-~v~eGRd--------igtvv~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~ 616 (661)
T PRK11860 546 LLALQRSFRRLPG-LVADGRD--------MGTVIFPDAALKVFLTASAEARAERRYKQLISKGISANIADLLADLEARDA 616 (661)
T ss_pred HHHHHHHHhhCCC-EEEECCC--------CccEECCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhH
Confidence 2222333333233 4544422 1122222 47899999999881 1 1124445555555542
Q ss_pred c----c----cc--CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 312 G----Y----SN--ADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 312 ~----Y----~~--AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
. + .. -+++|+++.++.+ +|+++|++.+++
T Consensus 617 ~d~~R~~~pl~~~~da~~idts~~~~~---~v~~~i~~~i~~ 655 (661)
T PRK11860 617 RDTQRSVAPLKPAQDALLLDNSDLTIE---QAVAQVLDWWQE 655 (661)
T ss_pred HhhcCCCCCCccCCCEEEEECCCCCHH---HHHHHHHHHHHh
Confidence 1 1 12 2378999999865 999999998864
No 38
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.22 E-value=2.2e-10 Score=102.42 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cC-----chhhhhhccCc-----HHHHHHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQ-----TIDSWMLAEGS-----DSVVNGECDVLESLSS 254 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~-----sI~eif~~~Ge-----~~FRe~E~~vL~~L~~ 254 (388)
...|+|+|++||||||+++.||+.+|+.++++|+++.+.. +. .+..++.. |. ..+..++..+...+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcccCc
Confidence 4579999999999999999999999999999998876652 21 23333332 21 1222222233322322
Q ss_pred CCCeEEEecCCcccccccHHHHHhh----c-CCcEEEEEcCccc--c-----c------cC----HHHHHHHHHHHhHh-
Q 016486 255 HVRAVVATLGGQQGAAARADKWQHL----Y-AGFTVWLSQTEAM--D-----E------NS----AKEEARRHVKDGKL- 311 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~~L----~-~g~VVyLd~~~e~--D-----~------~d----~~e~l~~l~~eR~~- 311 (388)
+..||..|- .........+ . ..++|||++|.+. . . .+ ..+++...++++.+
T Consensus 82 -~~~~i~dg~-----~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~ 155 (188)
T TIGR01360 82 -SKGFLIDGY-----PREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPV 155 (188)
T ss_pred -CCeEEEeCC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 344555552 2222212222 2 3679999999877 0 0 11 22344444555553
Q ss_pred --cccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 312 --GYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 312 --~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+|.. ..+ +.+++..+ +++|.++|...|+.
T Consensus 156 ~~~y~~~~~~-~~id~~~~--~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 156 IAYYETKGKL-RKINAEGT--VDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHhCCCE-EEEECCCC--HHHHHHHHHHHHhc
Confidence 3554 444 23333222 56899988888764
No 39
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.21 E-value=2.4e-10 Score=102.48 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=86.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHHHHHhcC--CCeEE
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVLESLSSH--VRAVV 260 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL~~L~~~--~~~VV 260 (388)
|+|+|+|||||||+|+.||+++|+.++++++++.+.... .+.+++ ..|+..-.++...++++.... .+.||
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 899999999999999999999999999998888766432 133333 345555555555565554321 23455
Q ss_pred EecCCcccccccHHHHH----hhc----CCcEEEEEcCccc--------cc-----cCHHHHHHHHHHHh-------Hhc
Q 016486 261 ATLGGQQGAAARADKWQ----HLY----AGFTVWLSQTEAM--------DE-----NSAKEEARRHVKDG-------KLG 312 (388)
Q Consensus 261 StGGG~~gav~r~enr~----~L~----~g~VVyLd~~~e~--------D~-----~d~~e~l~~l~~eR-------~~~ 312 (388)
-.|- ..+.+.+. .+. ..++|||++|.++ .. .+..+.++++++.. ..+
T Consensus 81 lDg~-----p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 81 IDGF-----PRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred EeCC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4451 33333332 222 2579999999987 11 12234444444322 123
Q ss_pred cccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 313 YSNADVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 313 Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
|...+.++.+++..+ +++|.++|.+.+
T Consensus 156 ~~~~~~~~~Id~~~~--~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINAEGS--VEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEECCCC--HHHHHHHHHHHh
Confidence 455554444444332 457777776654
No 40
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.21 E-value=4.2e-12 Score=136.98 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=102.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchh-hhhhccCcHHHHHHHHHHHHHHhc-CCCeEE
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLSS-HVRAVV 260 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~-eif~~~Ge~~FRe~E~~vL~~L~~-~~~~VV 260 (388)
.+....|+++|+||+||||||+.|++.|+|.++|+|.++...+++.+. +.+...|+..|+.+|.+++..+.. ..+.|+
T Consensus 212 ~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~ 291 (664)
T PTZ00322 212 MMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFIC 291 (664)
T ss_pred cccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344568999999999999999999999999999999999988888776 677778888999999888877764 345777
Q ss_pred EecCCcccccccHHHHHhhc---------C-C-----cEEEEEcCcccc--------------ccC----HHHHHHHHHH
Q 016486 261 ATLGGQQGAAARADKWQHLY---------A-G-----FTVWLSQTEAMD--------------ENS----AKEEARRHVK 307 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~---------~-g-----~VVyLd~~~e~D--------------~~d----~~e~l~~l~~ 307 (388)
++||+ +++...|+..++ . + .||||++ ...| .++ ..+++.++++
T Consensus 292 ~~Ggv---aI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~-vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~ 367 (664)
T PTZ00322 292 KTDGV---AVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV-VNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIE 367 (664)
T ss_pred cCCCE---EEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE-eCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77776 677665443332 1 2 5999998 4331 122 4577889999
Q ss_pred HhHhccccCcEE
Q 016486 308 DGKLGYSNADVV 319 (388)
Q Consensus 308 eR~~~Y~~AD~v 319 (388)
+|++.|+.++..
T Consensus 368 ~~~~~Ye~~~~~ 379 (664)
T PTZ00322 368 QLEAVYKSLNPV 379 (664)
T ss_pred HHHhhcccCCcc
Confidence 999999987643
No 41
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.21 E-value=1.1e-10 Score=110.72 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=91.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG 263 (388)
|+|+|+|||||||+|+.||+.|+ +.+++.|.+.+... .+...++..+++.+..+++.....+..||..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~ 75 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP------VWKEKYEEFIRDSTLYLIKTALKNKYSVIVDD 75 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 89999999999999999999883 34666776654331 12234667788877777777776666788777
Q ss_pred CCcccccccHHHHHhhcC-C---cEEEEEcCccc--------cccCHHHHHHHHHHH---hHhcc--ccCcEEEEcCCCC
Q 016486 264 GGQQGAAARADKWQHLYA-G---FTVWLSQTEAM--------DENSAKEEARRHVKD---GKLGY--SNADVVVKLQGWD 326 (388)
Q Consensus 264 GG~~gav~r~enr~~L~~-g---~VVyLd~~~e~--------D~~d~~e~l~~l~~e---R~~~Y--~~AD~vV~~d~~s 326 (388)
+... .-.+.+.+...+. + .+|||++|.+. +...+.+.+.+++.. ....| ..++++|+.+...
T Consensus 76 ~~~~-~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~ 154 (249)
T TIGR03574 76 TNYY-NSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKI 154 (249)
T ss_pred cchH-HHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCC
Confidence 6510 0112233333332 3 68999999877 111223344444443 33344 3477888776432
Q ss_pred cccHHHHHHHHHHHHHH
Q 016486 327 ADHAKSVAQASLSALKQ 343 (388)
Q Consensus 327 ~e~~eeVa~eIl~~L~~ 343 (388)
+ ++++++.|+..+..
T Consensus 155 ~--~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 155 D--YNEILEEILEISEN 169 (249)
T ss_pred C--HHHHHHHHHHHhhc
Confidence 2 45899888887654
No 42
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.18 E-value=2.9e-11 Score=127.16 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhh------hh-------h---ccC-----
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDS------WM-------L---AEG----- 237 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~e------if-------~---~~G----- 237 (388)
++..|.|.|++||||||+++.||+.||+.++|+|.+....+ |.+..+ .+ . ..|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 56889999999999999999999999999999999876642 211111 00 0 000
Q ss_pred -----------------------cHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486 238 -----------------------SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM 293 (388)
Q Consensus 238 -----------------------e~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~ 293 (388)
-..+|+.-.+..+++.+.++ ||.-|=- ..+-.+. ..+.|||++++++
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRD--------igtvV~P~AdlKIfL~As~ev 433 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRD--------IGTHVFPDAELKIFLTASVEE 433 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEccc--------ceeEEcCCCCEEEEEECCHHH
Confidence 01222222222233333223 3333321 1111222 3789999999988
Q ss_pred -------c----c--cCHHHHHHHHHHHhH---------hcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 294 -------D----E--NSAKEEARRHVKDGK---------LGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 294 -------D----~--~d~~e~l~~l~~eR~---------~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+ + ....+.+.+.+.+|. |+|.. ++++|++++++++ +|+++|++.++.
T Consensus 434 Ra~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsie---eVv~~Il~~i~~ 503 (512)
T PRK13477 434 RARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIE---EVVDKIIDLYRD 503 (512)
T ss_pred HHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHH---HHHHHHHHHHHH
Confidence 1 1 122678999999999 99998 6799999999865 999999999875
No 43
>PRK13808 adenylate kinase; Provisional
Probab=99.17 E-value=5.5e-10 Score=112.07 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=95.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHH-HHHhc---CC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS---HV 256 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL-~~L~~---~~ 256 (388)
++|+|+|+|||||||+++.||+.+|+.+|++|+++.+.. |..+.+++.. |.-.-.++-..++ +.|.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence 469999999999999999999999999999999997653 3334445433 2211111212222 22222 22
Q ss_pred CeEEEecCCcccccccHHHHH----hh-----cCCcEEEEEcCccc-------c------------ccCHHHHHHHHHHH
Q 016486 257 RAVVATLGGQQGAAARADKWQ----HL-----YAGFTVWLSQTEAM-------D------------ENSAKEEARRHVKD 308 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~----~L-----~~g~VVyLd~~~e~-------D------------~~d~~e~l~~l~~e 308 (388)
++||. | + ..+.+..+ .| ...++|||++|.++ . .++..+.+.+++..
T Consensus 80 G~ILD-G--F---PRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~ 153 (333)
T PRK13808 80 GFILD-G--F---PRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLAS 153 (333)
T ss_pred CEEEe-C--C---CCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHH
Confidence 34443 3 2 33322222 12 23789999999876 0 01223344444432
Q ss_pred ---h----HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCC
Q 016486 309 ---G----KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKK 350 (388)
Q Consensus 309 ---R----~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~ 350 (388)
. ..+|.+.+.++.+|+..+ +++|.++|...|..+...+.+
T Consensus 154 Y~~~t~PLl~~Y~e~~~lv~IDa~~s--iEEV~eeI~~~L~~~~~~~~~ 200 (333)
T PRK13808 154 YRAQTEPLVHYYSEKRKLLTVDGMMT--IDEVTREIGRVLAAVGAANAK 200 (333)
T ss_pred HHHHhHHHHHHhhccCcEEEEECCCC--HHHHHHHHHHHHHHHhCCCcc
Confidence 2 245776666777887654 679999999999988876543
No 44
>PRK02496 adk adenylate kinase; Provisional
Probab=99.17 E-value=4.6e-10 Score=101.39 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=86.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--c----hhhhhhccCcHHHHHHHHHHHHH-Hhc--CCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--T----IDSWMLAEGSDSVVNGECDVLES-LSS--HVR 257 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--s----I~eif~~~Ge~~FRe~E~~vL~~-L~~--~~~ 257 (388)
++|+|+|+|||||||+++.||+.+|++++++|+++.+.... . +..++ ..|+....++...++.. +.. ..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 56999999999999999999999999999999998775421 1 22222 23544444444444443 322 123
Q ss_pred eEEEecCCcccccccHHHHH-hh---c--CCcEEEEEcCccc---------cccCHHHHHHHHHHHhHh-------cccc
Q 016486 258 AVVATLGGQQGAAARADKWQ-HL---Y--AGFTVWLSQTEAM---------DENSAKEEARRHVKDGKL-------GYSN 315 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~-~L---~--~g~VVyLd~~~e~---------D~~d~~e~l~~l~~eR~~-------~Y~~ 315 (388)
.+|-.|-.. .......+. .+ . ...+|||+++.+. ...+..+.+.++++.-+. +|+.
T Consensus 81 g~vldGfPr--~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~ 158 (184)
T PRK02496 81 GWILDGFPR--KVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (184)
T ss_pred CEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556431 111112222 12 1 2679999999877 012233444444433222 5544
Q ss_pred CcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 316 ADVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 316 AD~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
-...+.+++..+ +++|.++|...|
T Consensus 159 ~~~~~~Ida~~~--~~~V~~~i~~~l 182 (184)
T PRK02496 159 RQKLLTIDGNQS--VEAVTTELKAAL 182 (184)
T ss_pred cCCEEEEECCCC--HHHHHHHHHHHh
Confidence 333455555433 568888887765
No 45
>PLN02674 adenylate kinase
Probab=99.16 E-value=7.1e-10 Score=106.93 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=74.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcCC-
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV- 256 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~- 256 (388)
...++|+|+|+|||||+|+|+.||+.+|+.+|++++++++. .|+.+.+++. .|+....++...++.+.....
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~ 107 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPS 107 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcC
Confidence 34578999999999999999999999999999999999876 3455677776 699999888888776654321
Q ss_pred --CeEEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc
Q 016486 257 --RAVVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 257 --~~VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~ 293 (388)
..+|-.| + ......-+ .|. -..||+|++|.++
T Consensus 108 ~~~g~ilDG--f---PRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~ 150 (244)
T PLN02674 108 CQKGFILDG--F---PRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAI 150 (244)
T ss_pred cCCcEEEeC--C---CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 2333333 1 32222222 222 1569999998765
No 46
>PRK14531 adenylate kinase; Provisional
Probab=99.13 E-value=1.1e-09 Score=99.68 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
+++|+|+|+|||||||+++.||+.+|+.+|++++++.+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 357999999999999999999999999999998888765
No 47
>PRK06547 hypothetical protein; Provisional
Probab=99.13 E-value=9.5e-11 Score=106.92 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc-----hhhhhhccCcHHHHHHH--HHHHHH--HhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVNGE--CDVLES--LSSH 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s-----I~eif~~~Ge~~FRe~E--~~vL~~--L~~~ 255 (388)
....|.|.|++||||||+++.||+.++++++++|+++....+.+ +.+.+.+.|+..++... ...... ....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~ 93 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP 93 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence 34567778999999999999999999999999999886543332 33444434544332100 000000 1122
Q ss_pred CCeEEEecCCcccccccHHHHHhhcC-C--cEEEEEcCccc
Q 016486 256 VRAVVATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM 293 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~ 293 (388)
...||..|+| ...+++++.+.+ + ++|||++|.++
T Consensus 94 ~~vVIvEG~~----al~~~~r~~~d~~g~v~~I~ld~~~~v 130 (172)
T PRK06547 94 GRRLIIEGVG----SLTAANVALASLLGEVLTVWLDGPEAL 130 (172)
T ss_pred CCeEEEEehh----hccHHHHHHhccCCCEEEEEEECCHHH
Confidence 3578888887 347788888754 4 69999999876
No 48
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.12 E-value=4.9e-10 Score=97.54 Aligned_cols=108 Identities=17% Similarity=0.028 Sum_probs=71.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc--Cchhhhh-hccCcHHHHHHHHHHHHHHh-cCCCeEEEecC
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--QTIDSWM-LAEGSDSVVNGECDVLESLS-SHVRAVVATLG 264 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g--~sI~eif-~~~Ge~~FRe~E~~vL~~L~-~~~~~VVStGG 264 (388)
|+|+|++||||||+|+.|++.++..++|.|.++..... +.....+ ...++.+++.+...+...+. ....+|+.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~~ 81 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACSA 81 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 78999999999999999999999999999999864211 0011111 22356677777655555553 44456666553
Q ss_pred CcccccccHHHHHhhcC------CcEEEEEcCccccccCHHHHHHHHHHHhH
Q 016486 265 GQQGAAARADKWQHLYA------GFTVWLSQTEAMDENSAKEEARRHVKDGK 310 (388)
Q Consensus 265 G~~gav~r~enr~~L~~------g~VVyLd~~~e~D~~d~~e~l~~l~~eR~ 310 (388)
.....++.++. -.+|||+++.+ .+.++...|.
T Consensus 82 ------~~~~~r~~~~~~~~~~~~~~v~l~~~~~--------~~~~R~~~R~ 119 (150)
T cd02021 82 ------LKRIYRDILRGGAANPRVRFVHLDGPRE--------VLAERLAARK 119 (150)
T ss_pred ------ccHHHHHHHHhcCCCCCEEEEEEECCHH--------HHHHHHHhcc
Confidence 33455554442 24999998863 4566666664
No 49
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.10 E-value=1.3e-09 Score=98.24 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=79.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcce--echhHHHHHhcCchh---hh-hhc----cCcHHH---HHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQTID---SW-MLA----EGSDSV---VNGECDVLES 251 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI--D~D~lIE~~~g~sI~---ei-f~~----~Ge~~F---Re~E~~vL~~ 251 (388)
+++.|+|+|++||||||+++.|++.++.+++ +.|.++...-+.... .+ +.. .-++.+ ...-...+..
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999987765 789887653221100 00 111 011121 1122233444
Q ss_pred HhcCCCeEEEecCCcccccccHHHHH---hhcC--CcEEEEEcCccccccCHHHHHHHHHHHhH-----------hc-c-
Q 016486 252 LSSHVRAVVATLGGQQGAAARADKWQ---HLYA--GFTVWLSQTEAMDENSAKEEARRHVKDGK-----------LG-Y- 313 (388)
Q Consensus 252 L~~~~~~VVStGGG~~gav~r~enr~---~L~~--g~VVyLd~~~e~D~~d~~e~l~~l~~eR~-----------~~-Y- 313 (388)
+...+..||....- ..++..++ .+.. -..|||++|.++ +.++..+|. .. +
T Consensus 81 ~l~~G~~VIvD~~~----~~~~~~r~~~~~~~~~~~~~v~l~~~~~~--------l~~R~~~R~~~~~~~~~~~~~~~~~ 148 (175)
T cd00227 81 MARAGANVIADDVF----LGRAALQDCWRSFVGLDVLWVGVRCPGEV--------AEGRETARGDRVPGQARKQARVVHA 148 (175)
T ss_pred HHhCCCcEEEeeec----cCCHHHHHHHHHhcCCCEEEEEEECCHHH--------HHHHHHhcCCccchHHHHHHHHhcC
Confidence 55545444443311 11233333 2322 358888888754 112222121 11 1
Q ss_pred -ccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 314 -SNADVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 314 -~~AD~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
...|++|++++.+++ +++++|++.|
T Consensus 149 ~~~~dl~iDts~~s~~---e~a~~i~~~l 174 (175)
T cd00227 149 GVEYDLEVDTTHKTPI---ECARAIAARV 174 (175)
T ss_pred CCcceEEEECCCCCHH---HHHHHHHHhc
Confidence 225899999987754 8999988876
No 50
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.08 E-value=1.9e-09 Score=100.28 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=63.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHH-HHhc---CC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSS---HV 256 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~-~L~~---~~ 256 (388)
++|+|+|+|||||||+++.||+.+|+.++++++++.+... ..+.+++.. |.....++...++. .+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDA-GELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccCccC
Confidence 4699999999999999999999999999999999876532 234444442 44333333333333 3332 12
Q ss_pred CeEEEecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc
Q 016486 257 RAVVATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM 293 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~ 293 (388)
++||. | . .......+.| . ...+|+|+++.+.
T Consensus 80 g~VlD-G-f----Pr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~ 119 (215)
T PRK00279 80 GFLLD-G-F----PRTIPQAEALDEMLKELGIKLDAVIEIDVPDEE 119 (215)
T ss_pred CEEEe-c-C----CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHH
Confidence 34554 4 1 3333333333 2 1479999999865
No 51
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.08 E-value=6.8e-10 Score=100.47 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=87.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA 258 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~ 258 (388)
.++..|+|+|.+||||||+++.|+..+ | ..++|+|.+...+.+. +. +-.+.....++.+ ..+...+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~-~~-~~~~~~~~~~~~~-~~~~~~~~~~G~~ 92 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD-LG-FSEEDRKENIRRI-GEVAKLFVRNGII 92 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccc-cC-CCHHHHHHHHHHH-HHHHHHHHcCCCE
Confidence 357899999999999999999999998 3 5688999876544321 11 0011122333333 2233444455555
Q ss_pred EEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc-c-CcEEEE
Q 016486 259 VVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS-N-ADVVVK 321 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~-~-AD~vV~ 321 (388)
||.... ......++.++ . -++|||++|.+. +.... .+.+..+...|.++|. . ||++|+
T Consensus 93 VI~d~~-----~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id 167 (184)
T TIGR00455 93 VITSFI-----SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD 167 (184)
T ss_pred EEEecC-----CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE
Confidence 554331 23344444443 2 258999999876 11000 1122234445666664 4 999999
Q ss_pred cCCCCcccHHHHHHHHHHHH
Q 016486 322 LQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 322 ~d~~s~e~~eeVa~eIl~~L 341 (388)
++..+++ +++++|+..|
T Consensus 168 t~~~~~~---~~~~~i~~~l 184 (184)
T TIGR00455 168 TDQNDRE---ECVGQIIEKL 184 (184)
T ss_pred CCCCCHH---HHHHHHHHhC
Confidence 9987654 8888887653
No 52
>PRK08233 hypothetical protein; Provisional
Probab=99.08 E-value=1.1e-09 Score=97.28 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=82.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-CcceechhHHHHHhcCchhhhhhccCcH----HHHHHHHHHHHHHhcCC--C
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSD----SVVNGECDVLESLSSHV--R 257 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-~~fID~D~lIE~~~g~sI~eif~~~Ge~----~FRe~E~~vL~~L~~~~--~ 257 (388)
++..|+|.|.+||||||+++.||+.|+ ...+-.|.+........+.+|... |.. ....+ .+.++.+.... .
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~~~~~~ 79 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDK-GANYSEWVLTPL-IKDIQELIAKSNVD 79 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhc-cCChhhhhhHHH-HHHHHHHHcCCCce
Confidence 457899999999999999999999996 444444444221111122233221 111 11111 12233333333 4
Q ss_pred eEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------c-----ccCHHHHHHHHHHHhHhcccc--------C
Q 016486 258 AVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------D-----ENSAKEEARRHVKDGKLGYSN--------A 316 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D-----~~d~~e~l~~l~~eR~~~Y~~--------A 316 (388)
+||..|.. ....++.+.. ...+|||++|.++ + .++..+.+...+..+++.|.. +
T Consensus 80 ~vivd~~~---~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 154 (182)
T PRK08233 80 YIIVDYPF---AYLNSEMRQF--IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNA 154 (182)
T ss_pred EEEEeeeh---hhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCC
Confidence 56654422 1222222221 2799999999987 1 112334566666666776643 5
Q ss_pred cEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 317 DVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 317 D~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+++|+.+ .+ +++++++|...|..
T Consensus 155 ~~vId~~-~~---~e~i~~~i~~~l~~ 177 (182)
T PRK08233 155 DIVLDGA-LS---VEEIINQIEEELYR 177 (182)
T ss_pred eEEEcCC-CC---HHHHHHHHHHHHHh
Confidence 6666533 22 56888888888764
No 53
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.02 E-value=1.2e-08 Score=93.05 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=85.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh--cCchhhhhhccCc-HHHHHHHHHHHHHHhcCCCeEE
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQTIDSWMLAEGS-DSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~--g~sI~eif~~~Ge-~~FRe~E~~vL~~L~~~~~~VV 260 (388)
+.|..|+|+|++||||||+++.|+..++..++|+|.+..... .+...-.+..... .+...+...+...+......+|
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 80 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFI 80 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEE
Confidence 357889999999999999999999999999999998643211 0001111222111 2233333322222222233445
Q ss_pred EecCCcccccccHHHHHhhcC-C---cEEEEEcCccc--c------c-cCHHHHHHHHHHHhHhcccc-Cc-EEEEcCCC
Q 016486 261 ATLGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM--D------E-NSAKEEARRHVKDGKLGYSN-AD-VVVKLQGW 325 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~--D------~-~d~~e~l~~l~~eR~~~Y~~-AD-~vV~~d~~ 325 (388)
+|+ .++...|+.++. + .+|||+++.+. . . ....+.+...+..-++.... .+ ++|+++..
T Consensus 81 v~s------~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~ 154 (176)
T PRK09825 81 VCS------SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDVNHD 154 (176)
T ss_pred EEE------ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEECCCC
Confidence 565 356667777764 2 58999998865 0 0 11122222222222222222 34 34555542
Q ss_pred CcccHHHHHHHHHHHHHHhhh
Q 016486 326 DADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~~~~~ 346 (388)
+++++.++...++.+..
T Consensus 155 ----~~~~~~~~~~~~~~~~~ 171 (176)
T PRK09825 155 ----IENVTEQCRQAVQAFRQ 171 (176)
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 45888888888876654
No 54
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.01 E-value=4.4e-09 Score=98.86 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=87.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--chhhhhhccCcHHH---------------------H
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV---------------------V 242 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--sI~eif~~~Ge~~F---------------------R 242 (388)
+..|.|+|..||||||+++.|++.+|++++|+|.+..+.+.. .+.++++..|++.+ +
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~ 85 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKK 85 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHH
Confidence 457999999999999999999999999999999998888754 24556666666554 1
Q ss_pred HHHH--------HHHHHHhcCC-CeEEEecCCcccccccHHHHHhh-cCCcEEEEEcCccc--------cccCHHHHHHH
Q 016486 243 NGEC--------DVLESLSSHV-RAVVATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAM--------DENSAKEEARR 304 (388)
Q Consensus 243 e~E~--------~vL~~L~~~~-~~VVStGGG~~gav~r~enr~~L-~~g~VVyLd~~~e~--------D~~d~~e~l~~ 304 (388)
++|. ++.+.+.... ..||.-.. .+-+..+..- .-+.+|++++|.+. |+-+ .+.+.+
T Consensus 86 ~Le~i~HP~V~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s-~~~a~~ 159 (204)
T PRK14733 86 WLEDYLHPVINKEIKKQVKESDTVMTIVDIP-----LLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN-RQQAVA 159 (204)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCeEEEEec-----hhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC-HHHHHH
Confidence 2221 1112222222 34443331 2222222111 12679999999876 2222 344444
Q ss_pred HHHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 305 HVKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 305 l~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
++....+ ... .||++|++++.+.+ +.-.++...++
T Consensus 160 ri~~Q~~~eek~~~aD~VI~N~g~~~~---~l~~~~~~~~~ 197 (204)
T PRK14733 160 FINLQISDKEREKIADFVIDNTELTDQ---ELESKLITTIN 197 (204)
T ss_pred HHHhCCCHHHHHHhCCEEEECcCCCHH---HHHHHHHHHHH
Confidence 4433322 223 39999999985443 44444444443
No 55
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.01 E-value=1.5e-09 Score=92.84 Aligned_cols=92 Identities=18% Similarity=0.122 Sum_probs=58.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE-EecCCcc
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV-ATLGGQQ 267 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV-StGGG~~ 267 (388)
|+|+|++||||||+|+.||+.+|++++|.|.+..+..+.-. +... ....+++...+.+.++...+.+|| +..++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~-~~~~--~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~-- 76 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLA-SEVA--AIPEVRKALDERQRELAKKPGIVLEGRDIG-- 76 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHH-HHhc--ccHhHHHHHHHHHHHHhhCCCEEEEeeeee--
Confidence 89999999999999999999999999999955333221101 1111 112344444455555655555666 33322
Q ss_pred cccccHHHHHhhc-CCcEEEEEcCccc
Q 016486 268 GAAARADKWQHLY-AGFTVWLSQTEAM 293 (388)
Q Consensus 268 gav~r~enr~~L~-~g~VVyLd~~~e~ 293 (388)
.. .+. ..++|||++|++.
T Consensus 77 -~~-------~~~~~~~~i~l~~~~~~ 95 (147)
T cd02020 77 -TV-------VFPDADLKIFLTASPEV 95 (147)
T ss_pred -eE-------EcCCCCEEEEEECCHHH
Confidence 11 122 3689999999986
No 56
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.00 E-value=4.9e-09 Score=94.30 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=58.9
Q ss_pred EecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccC-cHHHHHHHHHHHHHHhcCCCeEEEecCCccc
Q 016486 192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEG-SDSVVNGECDVLESLSSHVRAVVATLGGQQG 268 (388)
Q Consensus 192 IG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~G-e~~FRe~E~~vL~~L~~~~~~VVStGGG~~g 268 (388)
+|++||||||+++.|+..+|..++|+|.+.... .++.....+.+.+ ..+...++..+...+......||.|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~---- 76 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSA---- 76 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEec----
Confidence 699999999999999999999999999863211 1111111222222 234444444444333333445555552
Q ss_pred ccccHHHHHhhcC-C---cEEEEEcCccc
Q 016486 269 AAARADKWQHLYA-G---FTVWLSQTEAM 293 (388)
Q Consensus 269 av~r~enr~~L~~-g---~VVyLd~~~e~ 293 (388)
.+...++.+++ + .+|||+++.++
T Consensus 77 --~~~~~r~~~~~~~~~~~~v~l~a~~~~ 103 (163)
T PRK11545 77 --LKKHYRDLLREGNPNLSFIYLKGDFDV 103 (163)
T ss_pred --chHHHHHHHHccCCCEEEEEEECCHHH
Confidence 45666776664 2 48999988864
No 57
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.99 E-value=9e-09 Score=95.43 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=35.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+|+|+|++||||||+|+.||+.+|+++|++++++.+..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~ 38 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEI 38 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhh
Confidence 48999999999999999999999999999999987654
No 58
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.97 E-value=1.1e-09 Score=117.72 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=92.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC-
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR- 257 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~- 257 (388)
++..|+++|++||||||+|+.|+++| ++.++|.|.+.....+. ..+. +..+..++.+ .++...+...+.
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~---~~~~~~~r~~~~~~l-~~~a~~~~~~G~~ 534 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD---LGFSDADRVENIRRV-AEVARLMADAGLI 534 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC---CCCCHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence 47889999999999999999999997 46889999987544321 1121 1122334433 222233333343
Q ss_pred eEEEecCCcccccccHHHHHhhcC-C-cEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhccc-c-CcEEEEcCC
Q 016486 258 AVVATLGGQQGAAARADKWQHLYA-G-FTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYS-N-ADVVVKLQG 324 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~~-g-~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~ 324 (388)
+|+++.... ...|..+++++.+ + .+|||+++.+. +. ....+.+..++..|.++|. . ||++|++++
T Consensus 535 Vivda~~~~--~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~~~ 612 (632)
T PRK05506 535 VLVSFISPF--REERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDTTG 612 (632)
T ss_pred EEEECCCCC--HHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeCCC
Confidence 344443221 1223333333333 3 69999999877 21 0112345556677777653 3 899999988
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 016486 325 WDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 325 ~s~e~~eeVa~eIl~~L~~ 343 (388)
.++ ++++++|+++|..
T Consensus 613 ~s~---~e~v~~Ii~~l~~ 628 (632)
T PRK05506 613 RSP---EELAEQVLELLRR 628 (632)
T ss_pred CCH---HHHHHHHHHHHHH
Confidence 765 4999999999864
No 59
>PRK08356 hypothetical protein; Provisional
Probab=98.97 E-value=1.2e-08 Score=93.77 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=84.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-----------------chhhhhh-------ccCcHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-----------------TIDSWML-------AEGSDSVV 242 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-----------------sI~eif~-------~~Ge~~FR 242 (388)
+.|+|+|++||||||+++.|++ +|++.|.+.+.+.+.... +..++++ .+|.+..-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 5799999999999999999965 899999987643211100 0111110 01111111
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------ccc-----CHHHHHHHHHH
Q 016486 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------DEN-----SAKEEARRHVK 307 (388)
Q Consensus 243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D~~-----d~~e~l~~l~~ 307 (388)
..+++.+.... .||-.| +...++++.|.. +.+|||+++.+. +.. ...+.+.+++.
T Consensus 85 ---~~~~~~~~~~~-~ividG------~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 85 ---RLAVDKKRNCK-NIAIDG------VRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred ---HHHHHHhccCC-eEEEcC------cCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 12334442223 344444 355666666653 689999999876 111 13556666766
Q ss_pred HhHhccc-----c-CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 308 DGKLGYS-----N-ADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 308 eR~~~Y~-----~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
.+..+|. . ||++|.+++ + .++++.+|...+..+
T Consensus 155 ~~~~l~~~~~~~~~aD~vI~N~~-~---~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 155 WEEKLYHTTKLKDKADFVIVNEG-T---LEELRKKVEEILREL 193 (195)
T ss_pred HHHHhhhhhhHHHhCcEEEECCC-C---HHHHHHHHHHHHHHh
Confidence 5555443 4 999996643 3 458887777777654
No 60
>PRK14527 adenylate kinase; Provisional
Probab=98.96 E-value=1.7e-08 Score=92.09 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+++.|+|+|++||||||+++.||+++|+..+++|+++.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~ 45 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV 45 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 56889999999999999999999999999999999987654
No 61
>PLN02200 adenylate kinase family protein
Probab=98.96 E-value=1.2e-08 Score=97.29 Aligned_cols=153 Identities=10% Similarity=0.094 Sum_probs=85.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHH-HHHhcC-CC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVL-ESLSSH-VR 257 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL-~~L~~~-~~ 257 (388)
+..|+|+|+|||||||+|+.||+.+|+.+|++++++.+.... .+.+.+. .|...-.++...++ +.+... .+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999999999999999999988765421 1222221 23211112222222 223221 23
Q ss_pred eEEEecCCcccccccHHHHHhhc------CCcEEEEEcCccc--------c---ccCHHHHHHHHHHH----h---Hhcc
Q 016486 258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAM--------D---ENSAKEEARRHVKD----G---KLGY 313 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~------~g~VVyLd~~~e~--------D---~~d~~e~l~~l~~e----R---~~~Y 313 (388)
.+|-.| . ....+.+..+. ...+|||+++.++ . .++..+.++++++. . ..+|
T Consensus 122 ~~ILDG-~----Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 122 KFLIDG-F----PRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred eEEecC-C----cccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 2 33344333331 3679999999987 0 11212333333322 1 1245
Q ss_pred ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 314 SNADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 314 ~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
...+.++.+++..+ +++|.+.+...+.....
T Consensus 197 ~~~~~~~~IDa~~~--~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 197 SKKGKLYTINAVGT--VDEIFEQVRPIFAACEA 227 (234)
T ss_pred HhcCCEEEEECCCC--HHHHHHHHHHHHHHcCC
Confidence 54333444454432 56999999888876654
No 62
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.95 E-value=1.1e-08 Score=94.22 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=83.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc--C-chhhhhhccCcHHH----------------------
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--Q-TIDSWMLAEGSDSV---------------------- 241 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g--~-sI~eif~~~Ge~~F---------------------- 241 (388)
..|.|+|.+||||||+++.|++ +|++++|+|.+..+.+. . .+.++++..|++.|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 4699999999999999999999 99999999999887753 1 23344444443332
Q ss_pred HHHHH--------HHHHHHhcC--CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHH
Q 016486 242 VNGEC--------DVLESLSSH--VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEAR 303 (388)
Q Consensus 242 Re~E~--------~vL~~L~~~--~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~ 303 (388)
.++|. ++.+.+... ...||.-+. .+....+..+ -+.+|++++|.++ ++.+ .+.+.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-----ll~e~~~~~~-~D~vi~V~a~~e~~~~Rl~~R~~~s-~e~~~ 154 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-----LLFENGLEKL-VDRVLVVDAPPETQLERLMARDGLS-EEEAE 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-----HhhcCCchhh-CCeEEEEECCHHHHHHHHHHcCCCC-HHHHH
Confidence 11221 111122211 245554442 2222222211 1689999999877 1222 23344
Q ss_pred HHHHHhHhc--cc-cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 304 RHVKDGKLG--YS-NADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 304 ~l~~eR~~~--Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+++....+. +. .||++|++++. .+++..++...++.
T Consensus 155 ~ri~~Q~~~~~~~~~ad~vI~N~g~----~e~l~~qv~~i~~~ 193 (194)
T PRK00081 155 AIIASQMPREEKLARADDVIDNNGD----LEELRKQVERLLQE 193 (194)
T ss_pred HHHHHhCCHHHHHHhCCEEEECCCC----HHHHHHHHHHHHHh
Confidence 443322222 22 38999988763 34777777666543
No 63
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.93 E-value=2.3e-09 Score=97.14 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhhcc-CcHHHHHHHHHHHHHHhcCCCe
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAE-GSDSVVNGECDVLESLSSHVRA 258 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~~~-Ge~~FRe~E~~vL~~L~~~~~~ 258 (388)
+|..|+|+|.+||||||||+.|.++| ...++|+|.+..... ..+ -|..+ .++..|++ .++.+.|...+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~-~dl--~fs~~dR~e~~rr~-~~~A~ll~~~G~i 76 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN-ADL--GFSKEDREENIRRI-AEVAKLLADQGII 76 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT-TT----SSHHHHHHHHHHH-HHHHHHHHHTTSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC-CCC--CCCHHHHHHHHHHH-HHHHHHHHhCCCe
Confidence 46789999999999999999999999 367889998764322 222 13322 22333332 4555566666665
Q ss_pred EEEec-CCcccccccHHHHHhhcC--CcEEEEEcCccc
Q 016486 259 VVATL-GGQQGAAARADKWQHLYA--GFTVWLSQTEAM 293 (388)
Q Consensus 259 VVStG-GG~~gav~r~enr~~L~~--g~VVyLd~~~e~ 293 (388)
||++- +-. ...|..+|+.+.. -+.|||++|.++
T Consensus 77 vIva~isp~--~~~R~~~R~~~~~~~f~eVyv~~~~e~ 112 (156)
T PF01583_consen 77 VIVAFISPY--REDREWARELIPNERFIEVYVDCPLEV 112 (156)
T ss_dssp EEEE----S--HHHHHHHHHHHHTTEEEEEEEES-HHH
T ss_pred EEEeeccCc--hHHHHHHHHhCCcCceEEEEeCCCHHH
Confidence 55443 211 1223334444443 469999999876
No 64
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.93 E-value=1.5e-09 Score=90.73 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=32.2
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
.|+|+|++||||||+|+.||+.+|++++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 4899999999999999999999999999999954
No 65
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.92 E-value=1.1e-08 Score=98.99 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=65.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCch-hh-hhhccCcHHHHHHHHHHHHHHhcC-CCeEEEe
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-DS-WMLAEGSDSVVNGECDVLESLSSH-VRAVVAT 262 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI-~e-if~~~Ge~~FRe~E~~vL~~L~~~-~~~VVSt 262 (388)
+.|+|+|+|||||||+|+.|++++ ++.++|.|.+.+...+... .. .+...++..+++.....+...... ..+||.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~ 82 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD 82 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 568999999999999999999999 9999999998777654321 11 122234444555555555554433 3456654
Q ss_pred cCCcccccccHHHHHh-hcC-C--c-EEEEEcCccc
Q 016486 263 LGGQQGAAARADKWQH-LYA-G--F-TVWLSQTEAM 293 (388)
Q Consensus 263 GGG~~gav~r~enr~~-L~~-g--~-VVyLd~~~e~ 293 (388)
... .......+.. ++. + + +|||+++.++
T Consensus 83 ~~~---~~~~~~~~~~la~~~~~~~~~v~l~~~~e~ 115 (300)
T PHA02530 83 TNL---NPERRRKWKELAKELGAEFEEKVFDVPVEE 115 (300)
T ss_pred CCC---CHHHHHHHHHHHHHcCCeEEEEEeCCCHHH
Confidence 433 1222223332 232 2 2 7999988776
No 66
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.92 E-value=7.5e-09 Score=95.96 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=89.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccC-cHHHHHHHHHHHHHHhcCCC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEG-SDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~G-e~~FRe~E~~vL~~L~~~~~ 257 (388)
.++..|+|+|.+||||||||.+|+++| | ..++|+|.+..-.. ..+ -|..++ .+..|++ .++.+.+...+-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-~dL--gFs~edR~eniRRv-aevAkll~daG~ 96 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-RDL--GFSREDRIENIRRV-AEVAKLLADAGL 96 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-CCC--CCChHHHHHHHHHH-HHHHHHHHHCCe
Confidence 356789999999999999999999998 3 57889999765433 112 243322 2333332 445555555444
Q ss_pred eEE-EecCCcccccccHHHHHhhcC--CcEEEEEcCccc-cccCHHHHHHHHHHH-hH----------hcccc---CcEE
Q 016486 258 AVV-ATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM-DENSAKEEARRHVKD-GK----------LGYSN---ADVV 319 (388)
Q Consensus 258 ~VV-StGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~-D~~d~~e~l~~l~~e-R~----------~~Y~~---AD~v 319 (388)
+|| |.-.-+ ...|...|+.+.. .+-||+++|.++ ...|++ -+|.+ |. .-|+. .|++
T Consensus 97 iviva~ISP~--r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpK----GLYkKAr~GeI~~fTGid~pYE~P~~Pel~ 170 (197)
T COG0529 97 IVIVAFISPY--REDRQMARELLGEGEFIEVYVDTPLEVCERRDPK----GLYKKARAGEIKNFTGIDSPYEAPENPELH 170 (197)
T ss_pred EEEEEeeCcc--HHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCch----HHHHHHHcCCCCCCcCCCCCCCCCCCCeeE
Confidence 444 333211 1223344455554 469999999976 122221 12322 21 23543 5789
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 320 VKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 320 V~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
++++..+++ +.+++|+..|...
T Consensus 171 l~t~~~~ve---e~v~~i~~~l~~~ 192 (197)
T COG0529 171 LDTDRNSVE---ECVEQILDLLKER 192 (197)
T ss_pred eccccCCHH---HHHHHHHHHHHhc
Confidence 998887754 8999998888643
No 67
>PRK08118 topology modulation protein; Reviewed
Probab=98.92 E-value=3e-09 Score=96.25 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=57.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
+.|+|+|++||||||+|+.|++.+|+++++.|.++++.- +... ..+.+ .++++.+...++.|| .|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~------w~~~-~~~~~----~~~~~~~~~~~~wVi-dG~~~ 69 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN------WEGV-PKEEQ----ITVQNELVKEDEWII-DGNYG 69 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC------CcCC-CHHHH----HHHHHHHhcCCCEEE-eCCcc
Confidence 479999999999999999999999999999999986421 1111 11112 234445555455555 44331
Q ss_pred ccccccHHHHHhhc-CCcEEEEEcCcc
Q 016486 267 QGAAARADKWQHLY-AGFTVWLSQTEA 292 (388)
Q Consensus 267 ~gav~r~enr~~L~-~g~VVyLd~~~e 292 (388)
-.. + ..+. .+.+|||++|.+
T Consensus 70 ---~~~-~--~~l~~~d~vi~Ld~p~~ 90 (167)
T PRK08118 70 ---GTM-D--IRLNAADTIIFLDIPRT 90 (167)
T ss_pred ---hHH-H--HHHHhCCEEEEEeCCHH
Confidence 111 1 1223 489999999985
No 68
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.92 E-value=1.9e-08 Score=95.29 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~ 223 (388)
+...|.|.|++||||||+|+.||+.||++++|+|.++..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999998544
No 69
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.90 E-value=3.7e-09 Score=90.43 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhc-CCCeEEEecCC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSS-HVRAVVATLGG 265 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~-~~~~VVStGGG 265 (388)
.|+|+|++||||||+++.|++.+++.+|+.|.+..+..+....... ...-...+.+.-...++.... ...+||..+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~- 79 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN- 79 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc-
Confidence 3899999999999999999999999999999999887764222111 111112222233334444333 3345664332
Q ss_pred cccccccHHHHH----hhcC-C---cEEEEEcCccccccCHHHHHHHHHHHhHhc
Q 016486 266 QQGAAARADKWQ----HLYA-G---FTVWLSQTEAMDENSAKEEARRHVKDGKLG 312 (388)
Q Consensus 266 ~~gav~r~enr~----~L~~-g---~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~ 312 (388)
.....|+ .+++ | .+|||+++. +.+.++...|...
T Consensus 80 -----~~~~~r~~~~~~~~~~~~~~~~v~l~~~~--------~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 80 -----LSREERARLRELARKHGYPVRVVYLDAPE--------ETLRERLAQRNRE 121 (143)
T ss_dssp ------SHHHHHHHHHHHHHCTEEEEEEEECHHH--------HHHHHHHHTTHCC
T ss_pred -----CCHHHHHHHHHHHHHcCCeEEEEEEECCH--------HHHHHHHHhcCCc
Confidence 2233443 3332 4 478887766 3455666666544
No 70
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.90 E-value=1.8e-08 Score=91.82 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=80.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc---hhhhhhccCcHH----------------HHH------
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDS----------------VVN------ 243 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s---I~eif~~~Ge~~----------------FRe------ 243 (388)
|.|+|.+||||||+++.|++..|++++|+|.+..+.+... ..++.+..|++. |..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~~ 81 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELKW 81 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHHH
Confidence 8899999999999999999998899999999987765321 222333333222 111
Q ss_pred HH--------HHHHHHHh---cCCCeEEEecCCcccccccHHHHHhhc--CCcEEEEEcCccc-------cccCHHHHHH
Q 016486 244 GE--------CDVLESLS---SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAM-------DENSAKEEAR 303 (388)
Q Consensus 244 ~E--------~~vL~~L~---~~~~~VVStGGG~~gav~r~enr~~L~--~g~VVyLd~~~e~-------D~~d~~e~l~ 303 (388)
+| .++.+.+. ..+..||... .+-.++ .+. -+.+||++++.++ ......+.+.
T Consensus 82 le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~------pll~e~--~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~ 153 (188)
T TIGR00152 82 LNNLLHPLIREWMKKLLAQFQSKLAYVLLDV------PLLFEN--KLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQ 153 (188)
T ss_pred HHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc------hHhhhC--CcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 11 12222222 1123455333 111111 122 2679999999887 1122245666
Q ss_pred HHHHHhHhcccc---CcEEEEcCCCCcccHHHHHHHH
Q 016486 304 RHVKDGKLGYSN---ADVVVKLQGWDADHAKSVAQAS 337 (388)
Q Consensus 304 ~l~~eR~~~Y~~---AD~vV~~d~~s~e~~eeVa~eI 337 (388)
+++....+.+.. ||++|++++. .++...++
T Consensus 154 ~r~~~q~~~~~~~~~ad~vI~N~~~----~e~l~~~~ 186 (188)
T TIGR00152 154 KRLASQMDIEERLARADDVIDNSAT----LADLVKQL 186 (188)
T ss_pred HHHHhcCCHHHHHHhCCEEEECCCC----HHHHHHHH
Confidence 777666555543 9999988763 33555544
No 71
>PRK14528 adenylate kinase; Provisional
Probab=98.89 E-value=3.8e-08 Score=90.20 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=36.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 569999999999999999999999999999999987754
No 72
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.89 E-value=1.3e-08 Score=91.52 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=35.5
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+|+|+|++||||||+++.||+.+|+.++++|+++.+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~ 38 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI 38 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence 48999999999999999999999999999999987764
No 73
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.89 E-value=3.1e-09 Score=108.64 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=86.7
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcH----------------HHHHHHH-H
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD----------------SVVNGEC-D 247 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~----------------~FRe~E~-~ 247 (388)
.|.|+|++||||||+++.|++ +|+++||+|.+..+.+.. .+.++++..|++ .|+..|. .
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~ 81 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA 81 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 599999999999999999998 899999999999887643 345666666666 3433221 1
Q ss_pred HHHHH-------------hc-CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHH
Q 016486 248 VLESL-------------SS-HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRH 305 (388)
Q Consensus 248 vL~~L-------------~~-~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l 305 (388)
.|+.+ .. ....||..+.- .+....+..+ -+.+|||++|.+. ++.+ .+.....
T Consensus 82 ~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip----LL~E~~~~~~-~D~iI~V~ap~e~ri~Rl~~rRg~s-~~~a~~r 155 (395)
T PRK03333 82 VLNGIVHPLVGARRAELIAAAPEDAVVVEDIP----LLVESGMAPL-FHLVVVVDADVEVRVRRLVEQRGMA-EADARAR 155 (395)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee----eeecCCchhh-CCEEEEEECCHHHHHHHHHhcCCCC-HHHHHHH
Confidence 11111 11 11223322211 1222111110 1689999999987 1112 2233333
Q ss_pred HHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 306 VKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 306 ~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
+....+ ... .||++|++++ + .+++..++...++.++.
T Consensus 156 i~~Q~~~e~k~~~AD~vIdN~~-s---~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 156 IAAQASDEQRRAVADVWLDNSG-T---PDELVEAVRALWADRLL 195 (395)
T ss_pred HHhcCChHHHHHhCCEEEECCC-C---HHHHHHHHHHHHHHHHh
Confidence 332111 123 3899998665 3 34788888877776654
No 74
>PRK14526 adenylate kinase; Provisional
Probab=98.89 E-value=3.3e-08 Score=93.09 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=39.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------Cchhhhhh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWML 234 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~ 234 (388)
++|+|+|++||||||+++.||+.+|+.++++++++.+... ..+.+++.
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~ 54 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE 54 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH
Confidence 3699999999999999999999999999999999876532 34555554
No 75
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.89 E-value=1.2e-08 Score=97.26 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--c----hhhhhhccCc----HHHHHHHHHHHHHHh-
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--T----IDSWMLAEGS----DSVVNGECDVLESLS- 253 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--s----I~eif~~~Ge----~~FRe~E~~vL~~L~- 253 (388)
.+++|+|+|+|||||||+|+.||+.+|+++|++|+++++..+. + +.+++.. |. +.+..+-.+.+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence 4577999999999999999999999999999999999876543 2 3333332 42 333333333444432
Q ss_pred cCCCeEEEecCCcccccccHHHHHhhc----CCcEEEEEcCcc
Q 016486 254 SHVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEA 292 (388)
Q Consensus 254 ~~~~~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e 292 (388)
.....+|-.| . .-.......|. ...+|+|+++.+
T Consensus 84 ~~~~g~iLDG-f----PRt~~Qa~~l~~~~~~~~vi~l~~~~~ 121 (229)
T PTZ00088 84 DCFKGFILDG-F----PRNLKQCKELGKITNIDLFVNIYLPRN 121 (229)
T ss_pred ccCceEEEec-C----CCCHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 2223445445 1 33333333332 267999999874
No 76
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.87 E-value=2e-08 Score=99.03 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=79.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhc---CCCeEEEe
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS---HVRAVVAT 262 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~---~~~~VVSt 262 (388)
...|+|+|++||||||+++.|+ .+|+.++|.-.. .. +. .+++.+.. ...+.|+.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~---------~L---------~~----~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPP---------SL---------LP----KLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCH---------HH---------HH----HHHHHHHhcCCCCCeEEEE
Confidence 3579999999999999999997 569888865321 10 11 11111111 12333332
Q ss_pred cCCcccc-cccHHHHHhhcC-C---cEEEEEcCccc------cc----c--CHHHHHHHHHHHh---HhccccCcEEEEc
Q 016486 263 LGGQQGA-AARADKWQHLYA-G---FTVWLSQTEAM------DE----N--SAKEEARRHVKDG---KLGYSNADVVVKL 322 (388)
Q Consensus 263 GGG~~ga-v~r~enr~~L~~-g---~VVyLd~~~e~------D~----~--d~~e~l~~l~~eR---~~~Y~~AD~vV~~ 322 (388)
..=.++. -...++++.|+. | .+|||+++.++ .. + ...+..+.++++| .++|+.||++|++
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT 142 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT 142 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC
Confidence 2100000 113355666664 4 47999999988 10 0 0012334455555 5667779999999
Q ss_pred CCCCcccHHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~~ 343 (388)
++.+++ +++++|...+..
T Consensus 143 s~ls~~---el~e~I~~~l~~ 160 (288)
T PRK05416 143 SELSVH---QLRERIRERFGG 160 (288)
T ss_pred CCCCHH---HHHHHHHHHHhc
Confidence 998764 999999998865
No 77
>PRK04040 adenylate kinase; Provisional
Probab=98.83 E-value=9.2e-08 Score=88.38 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=35.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA 225 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~ 225 (388)
++.|+|+|++||||||+++.|++.| ++.+++.++++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence 3679999999999999999999999 899999999875544
No 78
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.81 E-value=9.9e-08 Score=88.48 Aligned_cols=40 Identities=20% Similarity=0.064 Sum_probs=36.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g 226 (388)
+.|.|+|++||||||+++.|++.+|++++|+|++..+...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA 41 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence 4699999999999999999999999999999999877653
No 79
>PLN02422 dephospho-CoA kinase
Probab=98.80 E-value=1.1e-07 Score=91.19 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=86.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcHHH----------------------H
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV----------------------V 242 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~~F----------------------R 242 (388)
.|.|+|..||||||+++.|+ .+|++++|+|++..+.+.. ...++.+..|++.+ +
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 59999999999999999999 5899999999997766532 13444444444433 2
Q ss_pred HHHH--------HHHHHHh----cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHH
Q 016486 243 NGEC--------DVLESLS----SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEA 302 (388)
Q Consensus 243 e~E~--------~vL~~L~----~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l 302 (388)
++|. ++.+.+. ....+||.-.. .+-+..+..+ -+.+|++++|.++ ++-+ .+.+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~-~D~vI~V~a~~e~ri~RL~~R~g~s-~eea 154 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIP-----LLFETKMDKW-TKPVVVVWVDPETQLERLMARDGLS-EEQA 154 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeh-----hhhhcchhhh-CCEEEEEECCHHHHHHHHHHcCCCC-HHHH
Confidence 2221 1111111 11234544332 2222222221 2689999999987 2222 4555
Q ss_pred HHHHHHhHhc--ccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 303 RRHVKDGKLG--YSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 303 ~~l~~eR~~~--Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
.+++....+. ... ||++|++++. .++...++...++.+.
T Consensus 155 ~~Ri~~Q~~~eek~~~AD~VI~N~gs----~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 155 RNRINAQMPLDWKRSKADIVIDNSGS----LEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHHHHcCChhHHHhhCCEEEECCCC----HHHHHHHHHHHHHHHh
Confidence 5555444333 233 9999998873 3467667666665553
No 80
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.78 E-value=1.3e-07 Score=88.00 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=33.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
.|.|+|.+||||||+++.|+. +|++++|+|++..+..
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~ 39 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV 39 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence 589999999999999999998 7999999998765544
No 81
>PLN02165 adenylate isopentenyltransferase
Probab=98.78 E-value=1.7e-08 Score=101.38 Aligned_cols=83 Identities=8% Similarity=0.170 Sum_probs=67.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCc---hhhhhhccCc---HHHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSVV 242 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~s---I~eif~~~Ge---~~FR 242 (388)
..++..|+|+|++||||||++..||+.+++.+|+.|.+ .++..|.. +..+....++ ..|+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 34577899999999999999999999999999999998 56666665 4444444444 6888
Q ss_pred HHHHHHHHHHhcCCCeEEEecCC
Q 016486 243 NGECDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 243 e~E~~vL~~L~~~~~~VVStGGG 265 (388)
+.+.+++.++.+.+..+|.|||+
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGT 142 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGS 142 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECCh
Confidence 88888888888778888888887
No 82
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.78 E-value=5.3e-08 Score=88.42 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=34.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g 226 (388)
|.|+|.+||||||+++.|++ +|++++|+|++.++.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 38 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence 78999999999999999999 99999999999887654
No 83
>PLN02459 probable adenylate kinase
Probab=98.77 E-value=1.2e-07 Score=92.50 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+++|+|+|+|||||||+++.||+.+|+.+|++++++.+..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei 68 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI 68 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHH
Confidence 3789999999999999999999999999999999987653
No 84
>PRK13973 thymidylate kinase; Provisional
Probab=98.75 E-value=2.1e-07 Score=86.89 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=84.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc---CCcceec--------hhHHHHHhcC----c-----hhhhhhccCcHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST--------KELLETFAKQ----T-----IDSWMLAEGSDSVVN 243 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~--------D~lIE~~~g~----s-----I~eif~~~Ge~~FRe 243 (388)
|+|+-|+|.|++||||||+++.|++.| |++++-+ .+++.+.... . ..-+|.. +.+..
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a---~r~~~ 77 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA---ARDDH 77 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH---HHHHH
Confidence 357899999999999999999999999 8888866 4444443211 0 0112222 12222
Q ss_pred HHHHHHHHHhcCCCeEEEecCC-----ccccc--ccHHHHHh--------hcCCcEEEEEcCccc--------ccc---C
Q 016486 244 GECDVLESLSSHVRAVVATLGG-----QQGAA--ARADKWQH--------LYAGFTVWLSQTEAM--------DEN---S 297 (388)
Q Consensus 244 ~E~~vL~~L~~~~~~VVStGGG-----~~gav--~r~enr~~--------L~~g~VVyLd~~~e~--------D~~---d 297 (388)
++..+...+.. +.+||+..=- .||+. ...+.... +....+|||++|+++ ... +
T Consensus 78 ~~~~i~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~ 156 (213)
T PRK13973 78 VEEVIRPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPD 156 (213)
T ss_pred HHHHHHHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccC
Confidence 23334444433 4466653210 01111 11111111 124789999999987 011 1
Q ss_pred HHH-HHHHHHHHhHhcccc-Cc----EEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 298 AKE-EARRHVKDGKLGYSN-AD----VVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 298 ~~e-~l~~l~~eR~~~Y~~-AD----~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
..+ .-.+.++++...|.+ ++ .++.+++..+ +++|.++|...+..++.
T Consensus 157 ~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~--~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 157 RFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATAS--PEAVAAEIWAAVDQRLL 209 (213)
T ss_pred chhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCC--HHHHHHHHHHHHHHHHh
Confidence 111 112334445555654 43 2333444333 67999999999887654
No 85
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.74 E-value=1.1e-07 Score=89.78 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=34.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
+.|.|.|++||||||+++.||++||+.++|+|.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 57999999999999999999999999999999876433
No 86
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.73 E-value=1e-07 Score=85.11 Aligned_cols=31 Identities=26% Similarity=0.197 Sum_probs=27.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~ 217 (388)
+.|+|.|++||||||+++.|++.| |+.++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 358999999999999999999999 7766655
No 87
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=2.4e-07 Score=88.10 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=34.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
..|.|=||.|||||||++.||++||+.|+|+..+....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 67999999999999999999999999999998886543
No 88
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.70 E-value=3.1e-07 Score=84.78 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE 222 (388)
++..|.|+|.+||||||+++.|++.++ ..+++.|.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 567899999999999999999999993 56789998764
No 89
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.67 E-value=2.9e-07 Score=84.10 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=30.7
Q ss_pred EEEEecCCCchHHHHHHHHHhc---CCcceechhHHHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET 223 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~ 223 (388)
|.|+|++||||||+++.|+..+ +..++.+|+++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 7899999999999999999998 4778889987643
No 90
>PRK14529 adenylate kinase; Provisional
Probab=98.64 E-value=5.5e-07 Score=85.89 Aligned_cols=101 Identities=5% Similarity=0.045 Sum_probs=63.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHH-HhcC-CCe
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSSH-VRA 258 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~-~~~ 258 (388)
++|+|+|++||||||+++.||+.++++++++.+++.+... +.+.+++ +.|.-.--++-..++.+ |.+. .+.
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence 4699999999999999999999999999999888876542 2344444 33554444444444433 3222 233
Q ss_pred EEEecCCcccccccHHHHHh----hc-----CCcEEEEEcCccc
Q 016486 259 VVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~----L~-----~g~VVyLd~~~e~ 293 (388)
+|-.| + +-..+.-+. |. ...+|+|++|.++
T Consensus 80 ~iLDG--f---PRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~ 118 (223)
T PRK14529 80 WLLDG--F---PRNKVQAEKLWEALQKEGMKLDYVIEILLPREV 118 (223)
T ss_pred EEEeC--C---CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 34334 1 333322222 21 2579999998753
No 91
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.64 E-value=1.3e-07 Score=103.12 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=34.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
.|.|.|++||||||+++.||++|||.|+|++.+....
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 6999999999999999999999999999998886553
No 92
>PRK07261 topology modulation protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=85.85 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=55.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|++||||||+++.|++.+|+++++.|.+..... +. +...+.|.. .+..+...+. +|--|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~------~~-~~~~~~~~~----~~~~~~~~~~-wIidg~~- 67 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN------WQ-ERDDDDMIA----DISNFLLKHD-WIIDGNY- 67 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc------cc-cCCHHHHHH----HHHHHHhCCC-EEEcCcc-
Confidence 469999999999999999999999999999998754211 11 112222322 1223333345 4444533
Q ss_pred ccccccHHHHHhhc-CCcEEEEEcCcc
Q 016486 267 QGAAARADKWQHLY-AGFTVWLSQTEA 292 (388)
Q Consensus 267 ~gav~r~enr~~L~-~g~VVyLd~~~e 292 (388)
........+. ...+|||+.|..
T Consensus 68 ----~~~~~~~~l~~ad~vI~Ld~p~~ 90 (171)
T PRK07261 68 ----SWCLYEERMQEADQIIFLNFSRF 90 (171)
T ss_pred ----hhhhHHHHHHHCCEEEEEcCCHH
Confidence 1111112233 488999999974
No 93
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.61 E-value=8.9e-07 Score=85.53 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=35.6
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g 226 (388)
.|.|+|..|||||||++.|++.+|+++||.|.+..+...
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~ 41 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA 41 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence 589999999999999999999999999999999776653
No 94
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.59 E-value=8.3e-07 Score=82.64 Aligned_cols=146 Identities=14% Similarity=0.081 Sum_probs=81.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcHHH----------------------HH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV----------------------VN 243 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~~F----------------------Re 243 (388)
|.|+|.+||||||+++.|++ +|..++|.|.+..+.... -+..+.+..|.+.+ +.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 78999999999999999976 699999999997665532 12223333333222 22
Q ss_pred HHHH--------HHHHHh--cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHH
Q 016486 244 GECD--------VLESLS--SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRH 305 (388)
Q Consensus 244 ~E~~--------vL~~L~--~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l 305 (388)
+|.- +.+.+. ....+||.-.. .+.+..+..+ -+.+||+++|.++ ++-+ .+.+..+
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~p-----LL~E~~~~~~-~D~vi~V~a~~e~r~~RL~~R~g~s-~e~a~~r 153 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVP-----LLFETDAYTL-CDATVTVDSDPEESILRTISRDGMK-KEDVLAR 153 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEEee-----eeeEcCchhh-CCEEEEEECCHHHHHHHHHHcCCCC-HHHHHHH
Confidence 2211 111111 12234443221 2222222211 2789999999987 2223 3445554
Q ss_pred HHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 306 VKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 306 ~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
+..-.+ -+. .||++|++++. .+++..++...++.+++
T Consensus 154 i~~Q~~~~~k~~~aD~vI~N~~~----~~~l~~~v~~l~~~~~~ 193 (196)
T PRK14732 154 IASQLPITEKLKRADYIVRNDGN----REGLKEECKILYSTLLK 193 (196)
T ss_pred HHHcCCHHHHHHhCCEEEECCCC----HHHHHHHHHHHHHHHHH
Confidence 443222 123 39999988763 34666666665555443
No 95
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.57 E-value=1.7e-06 Score=80.74 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
..|.|+|.+||||||+++.|++ +|++.+|.|.+..+..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~ 43 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQ 43 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence 5688999999999999999997 8999999997755543
No 96
>PLN02842 nucleotide kinase
Probab=98.55 E-value=7.3e-07 Score=94.02 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=89.6
Q ss_pred EEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHH-HHh----cCCCe
Q 016486 190 FLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLE-SLS----SHVRA 258 (388)
Q Consensus 190 vLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~-~L~----~~~~~ 258 (388)
.|+|++||||||+++.||+.+|+.++++++++.... |..+.+++.. |+..-.+.-..++. .+. .....
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~-G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNS-GRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 389999999999999999999999999999886542 2334555532 32111111112222 221 12345
Q ss_pred EEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc----------c--------------------------ccC
Q 016486 259 VVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM----------D--------------------------ENS 297 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~----------D--------------------------~~d 297 (388)
|+ .|- .......+.|. ..++|||+++.++ + .+|
T Consensus 80 IL-DGf-----PRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD 153 (505)
T PLN02842 80 LL-DGY-----PRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDD 153 (505)
T ss_pred EE-eCC-----CCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCC
Confidence 55 552 33333333332 3689999999877 1 012
Q ss_pred HHHHHHHHHHH---h-Hhcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 016486 298 AKEEARRHVKD---G-KLGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKL 351 (388)
Q Consensus 298 ~~e~l~~l~~e---R-~~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l 351 (388)
..+.++++++. . .+.... .+.++.+++..+ +++|.++|...|...+..++++
T Consensus 154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs--~EeVfeeI~~iL~~~L~~~~~~ 210 (505)
T PLN02842 154 TEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRP--KEVVFEEISSLLSQIQKDATKM 210 (505)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCC--HHHHHHHHHHHHHHHHhhhhhh
Confidence 23444444322 1 121111 134455665443 6799999999999988877765
No 97
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.55 E-value=5.5e-07 Score=81.51 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|+.|+|.|++||||||+++.|++.|+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999999994
No 98
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.53 E-value=1e-06 Score=81.16 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
++|+|+|+|||||||+|+.||++++++.+|+|++.....
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 479999999999999999999999999999999876654
No 99
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.53 E-value=1.3e-06 Score=79.32 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+++.|+|.|++||||||+++.|++.|
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 100
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.48 E-value=4.8e-07 Score=80.17 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=54.3
Q ss_pred EEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG 263 (388)
|+|+|.+||||||+++.|++.+ | +.+++.|.+.....+. .. +-.+...+.++.+.. ..+.+...+..||...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~-~~-~~~~~~~~~~~~~~~-~a~~l~~~G~~VIid~ 78 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD-LG-FSREDREENIRRIAE-VAKLLADAGLIVIAAF 78 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhc-cC-CCcchHHHHHHHHHH-HHHHHHhCCCEEEEcc
Confidence 7899999999999999999999 5 4567888876544321 10 111122233433322 3334444444444333
Q ss_pred CCcccccccHHHHHhhc----C--CcEEEEEcCcc
Q 016486 264 GGQQGAAARADKWQHLY----A--GFTVWLSQTEA 292 (388)
Q Consensus 264 GG~~gav~r~enr~~L~----~--g~VVyLd~~~e 292 (388)
. ....+.|..++ . -.+|||++|.+
T Consensus 79 ~-----~~~~~~R~~~~~l~~~~~~~~i~l~~~~e 108 (149)
T cd02027 79 I-----SPYREDREAARKIIGGGDFLEVFVDTPLE 108 (149)
T ss_pred C-----CCCHHHHHHHHHhcCCCCEEEEEEeCCHH
Confidence 2 12333333322 1 34899999874
No 101
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.1e-06 Score=81.31 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=80.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhc--cCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLA--EGSDSVVNGECDVLESLSSHVRAVVATL 263 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~--~Ge~~FRe~E~~vL~~L~~~~~~VVStG 263 (388)
+.|.|+|-||+||||+++.|+ .||+.++++-+++.+.- ..-.++.... -+.+..| ..++.+......||.+-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~----~~le~~~~~~~~Ivd~H 75 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLR----KRLEELLREGSGIVDSH 75 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHH----HHHHHHhccCCeEeech
Confidence 579999999999999999999 99999999998876542 1111111000 0112222 22222222334555421
Q ss_pred CCcccccccHHHHHhh-c-CCcEEEEEcCccc------c-ccC-------H-HHHHHHHHHHhHhccccCcEEEEcCCCC
Q 016486 264 GGQQGAAARADKWQHL-Y-AGFTVWLSQTEAM------D-ENS-------A-KEEARRHVKDGKLGYSNADVVVKLQGWD 326 (388)
Q Consensus 264 GG~~gav~r~enr~~L-~-~g~VVyLd~~~e~------D-~~d-------~-~e~l~~l~~eR~~~Y~~AD~vV~~d~~s 326 (388)
+.+| . ..+||-|.++++. + +-+ . -+.+.-.+.+-...+ .+-+.|++++.+
T Consensus 76 ------------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~-~~v~evdtt~~s 142 (180)
T COG1936 76 ------------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF-EAVIEVDTTNRS 142 (180)
T ss_pred ------------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CceEEEECCCCC
Confidence 2333 3 3889999999976 1 101 0 111222222222233 345779999988
Q ss_pred cccHHHHHHHHHHHHHH
Q 016486 327 ADHAKSVAQASLSALKQ 343 (388)
Q Consensus 327 ~e~~eeVa~eIl~~L~~ 343 (388)
++ +++++|.+.+..
T Consensus 143 ~e---e~~~~i~~ii~~ 156 (180)
T COG1936 143 PE---EVAEEIIDIIGG 156 (180)
T ss_pred HH---HHHHHHHHHHcc
Confidence 65 999999998886
No 102
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.48 E-value=9.2e-07 Score=83.16 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=34.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+.|-|+|+.||||||+++.+++ +|++.+|+|+.+.+..
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~ 40 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV 40 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence 5689999999999999999999 9999999999987554
No 103
>PRK13974 thymidylate kinase; Provisional
Probab=98.46 E-value=2.2e-06 Score=80.09 Aligned_cols=27 Identities=26% Similarity=0.075 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|..|+|.|++||||||+++.|++.|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999884
No 104
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.45 E-value=3.6e-06 Score=77.54 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=74.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcCch--hhhh--h---ccCcHHHHHHHHHHHH---HHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQTI--DSWM--L---AEGSDSVVNGECDVLE---SLS 253 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~sI--~eif--~---~~Ge~~FRe~E~~vL~---~L~ 253 (388)
|+.|+|-|.|-||||||++.|.+.+.-+|+- .|.+++.+..... ..-+ . .++...|+.+...... .++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999877554 6888874321111 0111 1 1123556666654443 334
Q ss_pred cCCCeEEEec---CCcccccccHHHH-HhhcCC--cEEEEEcCccccccCHHHHHHHHHHHhH------------hccc-
Q 016486 254 SHVRAVVATL---GGQQGAAARADKW-QHLYAG--FTVWLSQTEAMDENSAKEEARRHVKDGK------------LGYS- 314 (388)
Q Consensus 254 ~~~~~VVStG---GG~~gav~r~enr-~~L~~g--~VVyLd~~~e~D~~d~~e~l~~l~~eR~------------~~Y~- 314 (388)
..+.-||... ++ .. -.+.| +.|..- +.|-+.+|+++ ++++-..|. ..|.
T Consensus 81 ~aG~~VIvD~v~~~~---~~-l~d~l~~~L~~~~vl~VgV~Cplei--------l~~RE~~RgDR~~G~a~~q~~~Vh~~ 148 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGP---RW-LQDCLRRLLAGLPVLFVGVRCPLEI--------LERRERARGDRPIGLAAWQAEHVHEG 148 (174)
T ss_dssp HTT-EEEEEE--TTT---HH-HHHHHHHHHTTS-EEEEEEE--HHH--------HHHHHHHHTSSSTTHHHHHTTGGGTT
T ss_pred hCCCCEEEecCccCc---HH-HHHHHHHHhCCCceEEEEEECCHHH--------HHHHHHhcCCcchHHHHHHHhhcccC
Confidence 4454444332 11 01 12334 445442 35666666654 333333332 1233
Q ss_pred -cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 315 -NADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 315 -~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
..|+.|+++..+|+ ++|++|++.++
T Consensus 149 ~~YDleVDTs~~sp~---ecA~~I~~~~~ 174 (174)
T PF07931_consen 149 GRYDLEVDTSATSPE---ECAREILARLE 174 (174)
T ss_dssp ---SEEEETTSS-HH---HHHHHHHTT--
T ss_pred CCCCEEEECCCCCHH---HHHHHHHHHhC
Confidence 37999999988764 99999987664
No 105
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.42 E-value=4.1e-06 Score=78.59 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=24.9
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcce
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPL 215 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fI 215 (388)
|+|.|+.||||||+++.|++.|++.++
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 899999999999999999999987655
No 106
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.42 E-value=3.6e-06 Score=78.66 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCccee-chhHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS-TKELLETFA 225 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID-~D~lIE~~~ 225 (388)
+++.|++.|.+|+||||+++.||+++|+.++- +|.+.+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r 43 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLR 43 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHH
Confidence 46789999999999999999999999998655 554444433
No 107
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.40 E-value=6.6e-06 Score=76.16 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lI 221 (388)
++..|.|+|++||||||+++.|+..++ ..++..|.++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 467799999999999999999999886 5678888764
No 108
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.40 E-value=2.8e-06 Score=77.61 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|..|+|+|++||||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578999999999999999999999875
No 109
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.39 E-value=1.6e-06 Score=80.04 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.6
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g 226 (388)
.|.|+|..||||||+++.|++ +|++.+|+|.+..+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~ 39 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYE 39 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTS
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhh
Confidence 588999999999999999999 99999999999766653
No 110
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.37 E-value=3e-06 Score=79.87 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc-----c-eechhHHH-----HHhcCchh-hhhhccCcHHHHHHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-----P-LSTKELLE-----TFAKQTID-SWMLAEGSDSVVNGECDVLESL 252 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-----f-ID~D~lIE-----~~~g~sI~-eif~~~Ge~~FRe~E~~vL~~L 252 (388)
++..|.|+|++||||||+++.|+..+... . +..|++.. ...|.-.. ........+.+.+ ++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~----~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA----LLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH----HHHHH
Confidence 45689999999999999999999988531 2 55555431 11111000 0011111122221 22111
Q ss_pred h--------------------------cCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------c--
Q 016486 253 S--------------------------SHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------D-- 294 (388)
Q Consensus 253 ~--------------------------~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D-- 294 (388)
. ...++||..|.+ +......|..+.. +.+|||++|.+. +
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~---~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~ 184 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNY---LLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLA 184 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcc---eeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHh
Confidence 1 023578889987 4555567777765 689999999876 0
Q ss_pred ccCHHHHHHHHHHHhH-hc------ccc-CcEEEEcCCC
Q 016486 295 ENSAKEEARRHVKDGK-LG------YSN-ADVVVKLQGW 325 (388)
Q Consensus 295 ~~d~~e~l~~l~~eR~-~~------Y~~-AD~vV~~d~~ 325 (388)
..-..+.+.+++..|. +. ... ||++|.+++.
T Consensus 185 ~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 185 GGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTAT 223 (229)
T ss_pred cCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecCC
Confidence 1112344555555432 21 222 7777776653
No 111
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.36 E-value=1.4e-06 Score=79.48 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=53.0
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-chhh-hhhc--------------------------cCcH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-TIDS-WMLA--------------------------EGSD 239 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-sI~e-if~~--------------------------~Ge~ 239 (388)
.|.|.+..|||+++||+.||++||++|+|- +++++.++. .+++ .+.. .-.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 378999999999999999999999999999 666655432 1111 1111 1123
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc
Q 016486 240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM 293 (388)
Q Consensus 240 ~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~ 293 (388)
.+...+.+++.+++..+++||.-=||. .+++. ....+-|||.+|.+.
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~--~il~~-----~~~~l~V~i~A~~~~ 126 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCAN--YILRD-----IPNVLHVFIYAPLEF 126 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHH--HHTTT------TTEEEEEEEE-HHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHh--hhhCC-----CCCeEEEEEECCHHH
Confidence 333455677778876667776533221 12211 012479999999876
No 112
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.33 E-value=4.2e-06 Score=76.53 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=88.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhc-cCcHHHHHHHHHHHHHHhcCCC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLA-EGSDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~-~Ge~~FRe~E~~vL~~L~~~~~ 257 (388)
.+|..|+++|.+||||||+|-.|.+.|- -..+|+|.+. .|..-+--|.+ +..+..|++ .++.+-.+. .
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR---hGLN~DL~F~a~dR~ENIRRi-geVaKLFAD--a 102 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR---HGLNKDLGFKAEDRNENIRRI-GEVAKLFAD--A 102 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc---cccccccCcchhhhhhhHHHH-HHHHHHHhc--c
Confidence 3688999999999999999999999983 3467889874 23322222543 333445543 344433333 2
Q ss_pred eEEEecCCcc-cccccHHHHHhhcC--CcEEEEEcCccc-cccCHHHHHHHHHHHhH--------hcccc---CcEEEEc
Q 016486 258 AVVATLGGQQ-GAAARADKWQHLYA--GFTVWLSQTEAM-DENSAKEEARRHVKDGK--------LGYSN---ADVVVKL 322 (388)
Q Consensus 258 ~VVStGGG~~-gav~r~enr~~L~~--g~VVyLd~~~e~-D~~d~~e~l~~l~~eR~--------~~Y~~---AD~vV~~ 322 (388)
.||+--.-+. =-..|+..|.++.+ .+-||.++|.+. +..++. -+.++-...+ .-|+. +.+++..
T Consensus 103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPK-GLYK~ARaGkIKgFTGIddPYEaP~~cEi~l~~ 181 (207)
T KOG0635|consen 103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPK-GLYKLARAGKIKGFTGIDDPYEAPLNCEIVLKS 181 (207)
T ss_pred ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCch-hHHHHHhcccccccccCCCcccCCCCcEEEEcc
Confidence 3443221110 01345667777776 368999999977 222221 1222222111 12443 5677766
Q ss_pred CCCCcccHHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+..+. ++++|+.|++.|.+
T Consensus 182 ~~~~s--p~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 182 HESSS--PEEMAEIIVSYLDN 200 (207)
T ss_pred CCCCC--HHHHHHHHHHHHhh
Confidence 65544 56889888887764
No 113
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.33 E-value=2.2e-06 Score=75.19 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=33.1
Q ss_pred EEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 191 LIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
|+|+|||||+|+++.||+++|+.+|+.++++++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence 68999999999999999999999999999998765
No 114
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=5.9e-06 Score=78.15 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=25.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
++|+-|+|.|+.||||||+++.|++.|.
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~ 28 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLE 28 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999994
No 115
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.30 E-value=1.3e-05 Score=73.11 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=81.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHH--HHHHHHHHHHHH---hcCCCe
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDS--VVNGECDVLESL---SSHVRA 258 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~--FRe~E~~vL~~L---~~~~~~ 258 (388)
..+.+|+++|-||+||||+|..||+.+|+++|+.-+++++.- ++...++++ .---|..++..| ...++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc------chhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999999999988876542 111111111 000122333333 223556
Q ss_pred EEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--c-----c-------cC-HHHHHHHHHHHhHhccccCcEEEEcC
Q 016486 259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--D-----E-------NS-AKEEARRHVKDGKLGYSNADVVVKLQ 323 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--D-----~-------~d-~~e~l~~l~~eR~~~Y~~AD~vV~~d 323 (388)
||-.-|- -.-++-|= +.||.|.+|-+. | + .. .-+.+.-++++-...|. +++++..+
T Consensus 79 IVDyHgC----d~Fperwf----dlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL~ 149 (176)
T KOG3347|consen 79 IVDYHGC----DFFPERWF----DLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVELQ 149 (176)
T ss_pred EEeeccc----Cccchhhe----eEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-CcceeecC
Confidence 6654321 23333221 578888888765 1 0 00 01233334444455555 34778787
Q ss_pred CCCcccHHHHHHHHHHHHHHh
Q 016486 324 GWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 324 ~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+...+.......+++..+...
T Consensus 150 s~~~Eem~~ni~ri~~w~~~w 170 (176)
T KOG3347|consen 150 SETKEEMESNISRILNWTRMW 170 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 766542233333444444443
No 116
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.29 E-value=5.2e-06 Score=74.25 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
|+.|+|+|++||||||+++.|++.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46799999999999999999999764
No 117
>PRK13976 thymidylate kinase; Provisional
Probab=98.28 E-value=3.6e-05 Score=72.44 Aligned_cols=24 Identities=21% Similarity=-0.018 Sum_probs=22.5
Q ss_pred eEEEEecCCCchHHHHHHHHHhcC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
-|+|.|+.||||||+++.|++.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999984
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=2e-05 Score=72.85 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=92.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH-HHHhcC----chhhhhhccCcHHHHHHHHHHHHHHhcCC----
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHV---- 256 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI-E~~~g~----sI~eif~~~Ge~~FRe~E~~vL~~L~~~~---- 256 (388)
+.++++|.||+|||||-+.+.+.| ++..+.-.++. |.+-+. .-+++. ..-.+.-+++..++.+.+....
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~~~~ii 83 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-KLPLENQRELQAEAAKRIAEMALEII 83 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHhhhceE
Confidence 789999999999999999999999 88889865554 433322 334444 2233445555566665555432
Q ss_pred ---CeEEEecCCcccccccHH-HHHhhcCCcEEEEEcCccc-------cc-----cCHHHHHHHHHHH-hHhcc--cc--
Q 016486 257 ---RAVVATLGGQQGAAARAD-KWQHLYAGFTVWLSQTEAM-------DE-----NSAKEEARRHVKD-GKLGY--SN-- 315 (388)
Q Consensus 257 ---~~VVStGGG~~gav~r~e-nr~~L~~g~VVyLd~~~e~-------D~-----~d~~e~l~~l~~e-R~~~Y--~~-- 315 (388)
++.|=|.+|. ...-|. ..+.|...++|.|..+++. |. -+..+.++++.+. |-..| +.
T Consensus 84 vDtH~~IkTP~Gy--lpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~ 161 (189)
T COG2019 84 VDTHATIKTPAGY--LPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILL 161 (189)
T ss_pred EeccceecCCCcc--CCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566665 555554 4577788999999999887 31 1123445444332 22222 21
Q ss_pred -CcE-EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 316 -ADV-VVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 316 -AD~-vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
|-+ +|.+.... +++.+.+|+..|+.
T Consensus 162 gatVkIV~n~~~~---~e~Aa~eiv~~l~~ 188 (189)
T COG2019 162 GATVKIVENHEGD---PEEAAEEIVELLDR 188 (189)
T ss_pred CCeEEEEeCCCCC---HHHHHHHHHHHHhc
Confidence 333 34444333 56899999887753
No 119
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.24 E-value=1.3e-05 Score=89.63 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
.+..|.|-|++||||||+++.||++||+.|+|++.+....+
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 45689999999999999999999999999999999987654
No 120
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.24 E-value=9.3e-06 Score=74.97 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+++.|+|+|++|||||||.+.|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999999998876
No 121
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.23 E-value=1.3e-05 Score=74.62 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+++.|+|+|++|||||||.+.|++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999999864
No 122
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.19 E-value=1.3e-05 Score=72.96 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++.|+|+|++||||+|+.+.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5679999999999999999999985
No 123
>PLN02924 thymidylate kinase
Probab=98.18 E-value=9.7e-06 Score=76.93 Aligned_cols=31 Identities=19% Similarity=0.049 Sum_probs=27.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
+..+|+-|+|.|..||||||+++.|++.|..
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456889999999999999999999999953
No 124
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=1.7e-05 Score=74.14 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=80.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---------------------CcceechhHHHHHhcCchhhhhhccCcHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------------------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------------------~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe 243 (388)
+|.-|+|.|++|+|||||.+.|=+..+ |.|++-+++-+......+-||-.-.| ..+--
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g-nyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG-NYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcC-CcccC
Confidence 688899999999999999999987664 55666555433333233434433333 22211
Q ss_pred HHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHHHHHhH---hc
Q 016486 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRHVKDGK---LG 312 (388)
Q Consensus 244 ~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l~~eR~---~~ 312 (388)
.-..+-+.+.....+++-.. . ||+ ...+..+...+.|||..|--+ .+.+..+.+.++++.-. .+
T Consensus 82 ~~~~ve~~~~~G~~vildId-~-qGa---~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~ 156 (191)
T COG0194 82 SREPVEQALAEGKDVILDID-V-QGA---LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISH 156 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEe-h-HHH---HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 11222333333344444322 1 111 223344445778888877543 13333455555554322 34
Q ss_pred cccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 313 YSNADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 313 Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+...|++|.+++. +..+.++...+..
T Consensus 157 ~~~fdyvivNdd~-----e~a~~~l~~ii~a 182 (191)
T COG0194 157 ADEFDYVIVNDDL-----EKALEELKSIILA 182 (191)
T ss_pred HHhCCEEEECccH-----HHHHHHHHHHHHH
Confidence 5568999988864 3566655555543
No 125
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.16 E-value=1.7e-06 Score=89.64 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHH-HHhcCchhhhhhccCcHHHHHHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE-~~~g~sI~eif~~~Ge~~FRe~E 245 (388)
...+.+|+|+|++|+|||++++.||+.++.+|++.|. +++ ...|+.+.+++...++.+|+..+
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~ 109 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVK 109 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999994 454 46677888888777777766444
No 126
>PRK06696 uridine kinase; Validated
Probab=98.15 E-value=1.7e-05 Score=74.40 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCccee--chhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID--~D~lI 221 (388)
+...|.|.|.+||||||+++.|++.| |.+.+- +|+++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35679999999999999999999999 666654 88875
No 127
>PRK12338 hypothetical protein; Provisional
Probab=98.15 E-value=3.3e-05 Score=77.57 Aligned_cols=42 Identities=26% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcce-echhHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-D~D~lIE~~~g 226 (388)
++..|+|.|.+||||||+|+.||++||+.++ ++|.+.+.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 4568999999999999999999999999988 56665554444
No 128
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.13 E-value=1.9e-06 Score=70.04 Aligned_cols=90 Identities=19% Similarity=0.395 Sum_probs=77.5
Q ss_pred CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~ 158 (388)
+.|.|++...+|.+.+.+++.+....+|+.|+-..+++.|.++..++..-.+..++||..|+|.|.-|.+.+..+.+..+
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 57999999999999999998877678999999999999998866455554566689999999999999999999989988
Q ss_pred ccCCCCCCchh
Q 016486 159 KQDPELKWPDI 169 (388)
Q Consensus 159 ~~~~~~~wp~~ 169 (388)
+.+. ..||.+
T Consensus 82 K~~~-~~W~~L 91 (92)
T cd06468 82 KKKE-KKWESL 91 (92)
T ss_pred eCCC-CccCcc
Confidence 8876 578765
No 129
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=4.9e-05 Score=71.09 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=90.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-------chhhhhhccCcHHHHHHHHHHHHH-Hhc-C
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-------TIDSWMLAEGSDSVVNGECDVLES-LSS-H 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-------sI~eif~~~Ge~~FRe~E~~vL~~-L~~-~ 255 (388)
+...||++|-|||||-|+...+++.+||..+++++++.+.... -|.+++++ |.-.=-++-..+|+. +.+ .
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~-G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKN-GDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHc-CCcCcHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999998877644 13333332 322111222233322 211 1
Q ss_pred C-CeEEEecCCcccccccHHHHHhhc------CCcEEEEEcCccc--------c-----ccC----HHHHHHHHHHHhHh
Q 016486 256 V-RAVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAM--------D-----ENS----AKEEARRHVKDGKL 311 (388)
Q Consensus 256 ~-~~VVStGGG~~gav~r~enr~~L~------~g~VVyLd~~~e~--------D-----~~d----~~e~l~~l~~eR~~ 311 (388)
+ +..+-.| -+-..+++..+. ..+++|+|++.++ + .++ .+.++....+.+.|
T Consensus 86 ~~~~fLIDG-----yPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~P 160 (195)
T KOG3079|consen 86 DSNGFLIDG-----YPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLP 160 (195)
T ss_pred CCCeEEecC-----CCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchH
Confidence 1 2233334 266666665443 2689999999988 1 122 23333333334443
Q ss_pred ---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 312 ---GYSNADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 312 ---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+|+..+.+..++.... +++|..++...+..
T Consensus 161 vi~~~e~kg~l~~i~a~~~--~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 161 VIEYYEKKGKLLKINAERS--VDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHccCcEEEecCCCC--HHHHHHHHHHHhhc
Confidence 5666444445554433 56888888777653
No 130
>PRK07667 uridine kinase; Provisional
Probab=98.09 E-value=2.4e-05 Score=72.09 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=32.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~ 224 (388)
..|.|.|.+||||||+++.|++.|+ ...++.|++....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 5788999999999999999999874 4599999976443
No 131
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=8.1e-05 Score=71.10 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=78.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCc---ceechhHHHHHhcCchhh--hh-----hccCcHHHHHHHHHHHHHHhc--
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQTIDS--WM-----LAEGSDSVVNGECDVLESLSS-- 254 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~---fID~D~lIE~~~g~sI~e--if-----~~~Ge~~FRe~E~~vL~~L~~-- 254 (388)
.-|-|.|.+||||||+++.|++.|+-. .|..|++.......+..+ .. .....+.|.+ -|..|..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~----~L~~L~~g~ 84 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIE----HLKDLKQGK 84 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHH----HHHHHHcCC
Confidence 467789999999999999999999955 888898876444333321 11 1122233322 2222221
Q ss_pred ----------------------CCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------c----ccCH
Q 016486 255 ----------------------HVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------D----ENSA 298 (388)
Q Consensus 255 ----------------------~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D----~~d~ 298 (388)
..++||-.|=- ++.+ +.|+. ++.||++.+.+. | +.++
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~----~l~d---~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGIL----LLYD---ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccc----cccc---HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 13467777733 4444 23333 799999999877 2 3444
Q ss_pred HHHHHHHHHHhHhcc-------cc-CcEEEEcCCCC
Q 016486 299 KEEARRHVKDGKLGY-------SN-ADVVVKLQGWD 326 (388)
Q Consensus 299 ~e~l~~l~~eR~~~Y-------~~-AD~vV~~d~~s 326 (388)
...+.+.....+|.| ++ ||++|......
T Consensus 158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n 193 (218)
T COG0572 158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKN 193 (218)
T ss_pred HHHHHHHHHhhChhhhhccCcccccceEEeecCCcc
Confidence 444444444566665 23 89988777644
No 132
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.07 E-value=1.5e-05 Score=72.29 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+++.|+|+|++||||+||.+.|.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 468899999999999999999998764
No 133
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.05 E-value=2.5e-06 Score=71.13 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=69.7
Q ss_pred ccCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-
Q 016486 74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ- 152 (388)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~- 152 (388)
+|+.+.-|+|+-...||++++.++.. ..++|+.|+-..++|.|.++ |. .+|+ ++||..|+|.|..|.++|..
T Consensus 1 ~~~~~~~y~W~QT~~eV~v~i~lp~~--~~~kdv~V~i~~~~l~V~~~--g~--~~l~-G~L~~~I~~destWtled~k~ 73 (93)
T cd06494 1 VPCKTPWGCWYQTMDEVFIEVNVPPG--TRAKDVKCKLGSRDISLAVK--GQ--EVLK-GKLFDSVVADECTWTLEDRKL 73 (93)
T ss_pred CCccCCCcEEEeEcCEEEEEEECCCC--CceeeEEEEEEcCEEEEEEC--CE--EEEc-CcccCccCcccCEEEEECCcE
Confidence 35678899999999999999998874 38999999999999999873 32 3777 89999999999999999988
Q ss_pred HHHHhhccCC
Q 016486 153 LVINLKKQDP 162 (388)
Q Consensus 153 ~v~~~~~~~~ 162 (388)
+.+.+.|...
T Consensus 74 l~I~L~K~~~ 83 (93)
T cd06494 74 IRIVLTKSNR 83 (93)
T ss_pred EEEEEEeCCC
Confidence 5777777653
No 134
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.00 E-value=1.1e-05 Score=66.95 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=21.5
Q ss_pred EEEEecCCCchHHHHHHHHHhc
Q 016486 189 IFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L 210 (388)
|+|.|.+|||||||++.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999
No 135
>PRK06761 hypothetical protein; Provisional
Probab=97.99 E-value=1.5e-05 Score=78.67 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=65.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch----hhhhhcc-CcHHHHHH---HHHHHHHH-hcCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI----DSWMLAE-GSDSVVNG---ECDVLESL-SSHV 256 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI----~eif~~~-Ge~~FRe~---E~~vL~~L-~~~~ 256 (388)
++.|+|+|++||||||+++.|++.|+...++.+.+++.....+. ...|..+ -....+.. ...+.++. ....
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 46799999999999999999999998765555443221110000 0011110 00011111 11122222 2233
Q ss_pred CeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccccccCHHHHHHHHHHHhHhcccc
Q 016486 257 RAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSN 315 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~ 315 (388)
.+|+.|.+ +++.+++.++. .-+-+++ .. +.+.+++++..|..+|++
T Consensus 83 ~~i~~~~~------l~~~yr~~~~~~~~~~~~v~~~h-~~------p~e~i~~R~~~rw~~f~~ 133 (282)
T PRK06761 83 YYLLPYRK------IKNEFGDQFSDELFNDISKNDIY-EL------PFDKNTELITDRWNDFAE 133 (282)
T ss_pred eEEEEehh------hhHHHhhhhhhhhcccceeeeee-cC------CHHHHHHHHHHHHHHHHH
Confidence 56777773 55666666552 2355554 22 367899999999999987
No 136
>COG0645 Predicted kinase [General function prediction only]
Probab=97.99 E-value=4.6e-05 Score=70.21 Aligned_cols=101 Identities=15% Similarity=0.027 Sum_probs=62.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch-----hhhhhc-cCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI-----DSWMLA-EGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI-----~eif~~-~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
+-+++.|.||+||||+++.|++.||...|.+|.......|.+. ..++.. .....|-++..... .+.+.+..||
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~-l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAE-LLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHH-HHHhCCCcEE
Confidence 4578999999999999999999999999999998877777321 111111 11122332222222 2334455666
Q ss_pred EecCCcccccccHHHHHhhc----C-C---cEEEEEcCccc
Q 016486 261 ATLGGQQGAAARADKWQHLY----A-G---FTVWLSQTEAM 293 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~----~-g---~VVyLd~~~e~ 293 (388)
..++ ..++..|+... . | +.|++.++.++
T Consensus 81 lDa~-----~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v 116 (170)
T COG0645 81 LDAT-----FDRPQERALARALARDVGVAFVLIRLEAPEEV 116 (170)
T ss_pred Eecc-----cCCHHHHHHHHHHHhccCCceEEEEcCCcHHH
Confidence 6553 46666665543 2 3 35677766654
No 137
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.97 E-value=2.7e-05 Score=71.42 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=27.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcC---Cc------ceechhHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG---YT------PLSTKELL 221 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG---~~------fID~D~lI 221 (388)
|.|.|++||||||+|+.|+..|+ .. ++..|.+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 78999999999999999999997 32 55566553
No 138
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.92 E-value=5e-05 Score=80.81 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
+...|+++|.|||||||+++.+++.+|+..|+.|.+
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 356799999999999999999999999999999986
No 139
>PTZ00301 uridine kinase; Provisional
Probab=97.92 E-value=0.00015 Score=68.44 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lIE 222 (388)
+...|-|.|.+||||||+++.|+++|. ...+..|.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 345688999999999999999998872 23566788764
No 140
>PLN02840 tRNA dimethylallyltransferase
Probab=97.87 E-value=2.9e-05 Score=80.53 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=57.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHH
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVV 242 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FR 242 (388)
...++..|+|+|++||||||++..||+.++..+|+.|.+. ++..+. .+-+.-+...-..|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 4445678999999999999999999999999999999851 222221 111122333445676
Q ss_pred HHHHHHHHHHhcCCCeEEEecCC
Q 016486 243 NGECDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 243 e~E~~vL~~L~~~~~~VVStGGG 265 (388)
+.-.++++.+.+.+.+.|-+||-
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc
Confidence 66677788887766665555653
No 141
>PLN02348 phosphoribulokinase
Probab=97.86 E-value=4.8e-05 Score=78.27 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCC--------------------cceechhHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGY--------------------TPLSTKELL 221 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~--------------------~fID~D~lI 221 (388)
...|-|.|.+||||||+++.|++.||- ..|.+|+++
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 346779999999999999999999973 368889886
No 142
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.86 E-value=5.1e-05 Score=75.68 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E 245 (388)
++..|+|+|++|||||+++..||+.++..+|+.|.+- ++..|. ++-++-+......|.+.-
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 3467999999999999999999999999999999951 111111 111111222334566655
Q ss_pred HHHHHHHhcCCCeEEEecCC
Q 016486 246 CDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG 265 (388)
...++++...+..+|-+||.
T Consensus 83 ~~~i~~i~~~gk~pIlvGGt 102 (307)
T PRK00091 83 LAAIADILARGKLPILVGGT 102 (307)
T ss_pred HHHHHHHHhCCCCEEEECcH
Confidence 66677666555554445543
No 143
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=7.5e-05 Score=73.06 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=28.9
Q ss_pred EEEEecCCCchHHHHHHHHHhc---CCcceechhHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL 221 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lI 221 (388)
|.|+|.+||||||+++.|+..+ +...+.+|++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6799999999999999999988 45688888774
No 144
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.83 E-value=0.00026 Score=67.48 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=32.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC----CcceechhHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLETFA 225 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~lIE~~~ 225 (388)
.+.|+|-||-|+||||++++||++|| +..++-|.+++..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHH
Confidence 47899999999999999999999999 44455566655544
No 145
>PRK07429 phosphoribulokinase; Provisional
Probab=97.82 E-value=9e-05 Score=74.47 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lI 221 (388)
+...|.|+|.+||||||+++.|+..|+ ...+..|+++
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 345788999999999999999999998 5678888875
No 146
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.80 E-value=5.4e-05 Score=58.87 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=24.4
Q ss_pred EEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~ 217 (388)
|+|+|.+||||||+++.|++.| ++.+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 7899999999999999999994 4555544
No 147
>PRK07933 thymidylate kinase; Validated
Probab=97.80 E-value=0.00013 Score=68.55 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=23.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+-|+|.|+.||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999999994
No 148
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.79 E-value=0.00023 Score=67.61 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=33.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK 226 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g 226 (388)
.|-|+|-.|||||||.+.+- ++|++.||.|.+-.+...
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~ 40 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE 40 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhc
Confidence 36689999999999999776 899999999999777664
No 149
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.78 E-value=0.00011 Score=70.23 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=72.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC---Ccceec--hhHHHHHhcCchhhhhhccCcHHHH-HHHHHHHHHHhcCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG---YTPLST--KELLETFAKQTIDSWMLAEGSDSVV-NGECDVLESLSSHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FR-e~E~~vL~~L~~~~~~VV 260 (388)
+-|+|+|.|||||||.++.||+.|. +..++. |-.+--....+.+-+ ++.-++.|. ..++ ++-+..+ .-.||
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~~r-lldSalk-n~~VI 78 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSVER-LLDSALK-NYLVI 78 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchH-HHHHHHHHHHHHHH-HHHHHhc-ceEEE
Confidence 3589999999999999999999994 444443 322221122333322 111122232 2333 3322222 23666
Q ss_pred EecCCcccccccHHHHHhhc-------C-CcEEEEEcCccc----c----ccCHHHHHHHHHHH---hHhccc--cCcEE
Q 016486 261 ATLGGQQGAAARADKWQHLY-------A-GFTVWLSQTEAM----D----ENSAKEEARRHVKD---GKLGYS--NADVV 319 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~-------~-g~VVyLd~~~e~----D----~~d~~e~l~~l~~e---R~~~Y~--~AD~v 319 (388)
+..-- +-..-|..|. . ..+|||.+|+++ + ++=+.+-++++|++ =.+-|. .+-++
T Consensus 79 vDdtN-----YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rWDspll~ 153 (261)
T COG4088 79 VDDTN-----YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLV 153 (261)
T ss_pred Eeccc-----HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccccCceEE
Confidence 64421 2222232222 1 459999999988 1 22234445555443 333443 24466
Q ss_pred EEcCCCCcccHHHHHHHHHHHHH
Q 016486 320 VKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 320 V~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
|+.+.... ++.+-|...+.
T Consensus 154 id~~d~~t----~~IDfiesvl~ 172 (261)
T COG4088 154 IDDSDVST----EVIDFIESVLR 172 (261)
T ss_pred Eecccccc----cchhHHHHHHH
Confidence 66544333 34444444443
No 150
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.77 E-value=0.0001 Score=68.00 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=30.6
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHH
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL 221 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lI 221 (388)
+.-++..|+|.|.+||||||++..+...+ ++..||.|++.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 33467789999999999999999999987 78999999974
No 151
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.77 E-value=0.0001 Score=68.61 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=32.0
Q ss_pred EEEEecCCCchHHHHHHHHHhc-CCcceechhHHHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET 223 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~ 223 (388)
|.|.|.+||||||+++.|++.+ +..+|.+|+++..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 7899999999999999999999 7999999998643
No 152
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.77 E-value=3.1e-05 Score=80.55 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHH-HHhcCchhhhhhccCcHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSV 241 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE-~~~g~sI~eif~~~Ge~~F 241 (388)
.+.+|+|+|++|+|||++|+.||+.++.+|+..|. +.+ ...|.+..+++....+.+|
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~ 108 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAV 108 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999985 343 2556676666665555554
No 153
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=97.76 E-value=9.4e-06 Score=84.80 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=65.0
Q ss_pred hhccCCCCce--eecchhHHHHHhh--------------ccCCCCCCchhhhhhHHhhhhhhhcc-----------CCCe
Q 016486 136 FDKIKPTETI--WYIDEDQLVINLK--------------KQDPELKWPDIVESWESLTAGSMQLL-----------KGTS 188 (388)
Q Consensus 136 ~~~i~~~e~i--w~~d~~~~v~~~~--------------~~~~~~~wp~~~~~W~sl~~~~~~~l-----------~g~~ 188 (388)
+..++..|.+ ..+||+.+.+.|. ..+..++||+| |..+.+.....+ +...
T Consensus 489 ~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~y---~~Vl~~~~~~kltgaeple~~a~knss 565 (595)
T KOG0692|consen 489 EKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDY---FQVLERITKHKLTGAEPLESGAIKNSS 565 (595)
T ss_pred hHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccchH---HHHHHHHhhccccccChhhccccccce
Confidence 5566666643 4599999999996 35578999999 887776554333 3468
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+|++||.++||||+|+..|++|+|.++|.|
T Consensus 566 m~vigmr~agkttigk~~akeL~~kimdld 595 (595)
T KOG0692|consen 566 MFVIGMREAGKTTIGKPAAKELYWKIMDLD 595 (595)
T ss_pred eeeehhhhcCceecCccchHHhCeeeeccC
Confidence 999999999999999999999999999986
No 154
>PLN02748 tRNA dimethylallyltransferase
Probab=97.75 E-value=7.1e-05 Score=78.64 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhhhhccCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~eif~~~Ge~~FRe~E 245 (388)
++..|+|+|+.|||||+++..||+.++..+|++|.+ .++..|. .+-++-+...-..|+..-
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A 100 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA 100 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence 456799999999999999999999999999999975 1222221 111122334445777777
Q ss_pred HHHHHHHhcCCCeEEEecCC
Q 016486 246 CDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG 265 (388)
..+++.+...+.+.|-+||-
T Consensus 101 ~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 101 VPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHhcCCCeEEEcCh
Confidence 78888887767666666653
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.75 E-value=2.4e-05 Score=65.25 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=27.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
|+|.|++|+||||+++.+|+.++++++..|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 689999999999999999999998886654
No 156
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.74 E-value=0.00018 Score=65.18 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=25.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
|+|.|++||||||+++.|++.+|+.++.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 8999999999999999999999876664
No 157
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.71 E-value=9.9e-05 Score=73.10 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=53.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHHHHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECDVL 249 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~~vL 249 (388)
|+|+|++|||||+++..||+.++..+|..|.+- ++..|. ++-++-+...-..|...-.+++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i 81 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence 899999999999999999999999999999851 111111 1112223333456666666777
Q ss_pred HHHhcCCCeEEEecCC
Q 016486 250 ESLSSHVRAVVATLGG 265 (388)
Q Consensus 250 ~~L~~~~~~VVStGGG 265 (388)
+++.+.+..+|-+||-
T Consensus 82 ~~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 82 ADITARGKIPLLVGGT 97 (287)
T ss_pred HHHHhCCCCEEEEcCc
Confidence 7877766666666664
No 158
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.69 E-value=0.00051 Score=68.08 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=69.0
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHH-HhcCCCe--EEEe
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQTIDSWMLAEGSDSVVNGECDVLES-LSSHVRA--VVAT 262 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~~~~--VVSt 262 (388)
.|+|+|++||||||..+.|-. +||.+||- =.++.+.. + ++.+ -....++ +|..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDNlP~~Ll~~l~-----------------~----~~~~~~~~~~~~Ai~iD~ 60 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDNLPPSLLPQLI-----------------E----LLAQSNSKIEKVAIVIDI 60 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcCCcHHHHHHHH-----------------H----HHHhcCCCCceEEEEEeC
Confidence 589999999999999997755 68888773 12222111 1 1110 0111222 2221
Q ss_pred -cCCcccccccHHHHHhhcC-C---cEEEEEcCccc-----c------c-cCHHHHHHHHHHHhH---hccccCcEEEEc
Q 016486 263 -LGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM-----D------E-NSAKEEARRHVKDGK---LGYSNADVVVKL 322 (388)
Q Consensus 263 -GGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~-----D------~-~d~~e~l~~l~~eR~---~~Y~~AD~vV~~ 322 (388)
++++ ...-.+....|++ + -+|||+++.++ . + ......++.+-+||+ ++-+.||++|++
T Consensus 61 R~~~~--~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDT 138 (284)
T PF03668_consen 61 RSREF--FEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDT 138 (284)
T ss_pred CChHH--HHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 2221 1111122233332 3 39999999887 0 0 000112334555554 344559999999
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~ 342 (388)
++.++. +..+.|.+.+.
T Consensus 139 s~l~~~---~Lr~~i~~~~~ 155 (284)
T PF03668_consen 139 SNLSVH---QLRERIRERFG 155 (284)
T ss_pred CCCCHH---HHHHHHHHHhc
Confidence 999864 66666666554
No 159
>PRK09087 hypothetical protein; Validated
Probab=97.66 E-value=7.1e-05 Score=71.16 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=31.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE 222 (388)
..++|.|++|||||++++.+++..+..|++.+.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 459999999999999999999999999999975443
No 160
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.66 E-value=1.5e-05 Score=61.53 Aligned_cols=75 Identities=24% Similarity=0.519 Sum_probs=62.3
Q ss_pred ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHH
Q 016486 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~ 156 (388)
.|.|.+...+|.+++.+++.+ .+.+|+.|+-.++++.|.+...++...+++.+ ||..|.|.|..|.+++..+.+.
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~-~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~-L~~~I~~~~s~~~~~~~~i~i~ 76 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVD-ISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGE-LFGEIDPDESTWKVKDNKIEIT 76 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTT-SSGGGEEEEEETTEEEEEEEETTSCEEEEEEE-BSS-BECCCEEEEEETTEEEEE
T ss_pred CeEEEECCCEEEEEEEEcCCC-CChHHeEEEEEeeEEEEEEEccCCceEEEEEE-EeeeEcchhcEEEEECCEEEEE
Confidence 699999999999999997766 67889999999999999988776666666665 9999999999999888765443
No 161
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.66 E-value=2.2e-05 Score=60.97 Aligned_cols=83 Identities=30% Similarity=0.567 Sum_probs=70.7
Q ss_pred ecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCC
Q 016486 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP 162 (388)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~ 162 (388)
|.+...+|.+++.+++.. .+++.|+..++++.|++...++....++.. ||..|.|.+.-|.+++..+.+.+++...
T Consensus 1 W~Q~~~~v~i~v~~~~~~---~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~-L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVT---KKDVKVEFTPKSLTVSVKGGGGKEYLLEGE-LFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCC---ccceEEEEecCEEEEEeeCCCCCceEEeeE-ccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 346678999999999876 889999999999999998765666677765 9999999999999999999999998887
Q ss_pred CCCCchh
Q 016486 163 ELKWPDI 169 (388)
Q Consensus 163 ~~~wp~~ 169 (388)
+..||.+
T Consensus 77 ~~~W~~l 83 (84)
T cd06463 77 GEWWPRL 83 (84)
T ss_pred CCCCccc
Confidence 6788865
No 162
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.65 E-value=0.00019 Score=64.80 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=19.6
Q ss_pred EEecCCCchHHHHHHHHHhcC
Q 016486 191 LVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 191 LIG~~GSGKSTVGr~LAk~LG 211 (388)
|.|+.||||||+++.|+++|.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~ 21 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALK 21 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999995
No 163
>PRK15453 phosphoribulokinase; Provisional
Probab=97.65 E-value=0.0002 Score=71.06 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=33.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE 222 (388)
++..|.|+|.+||||||+++.|++.++ ..++++|.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 456899999999999999999999885 56899999875
No 164
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.64 E-value=2.4e-05 Score=62.34 Aligned_cols=83 Identities=27% Similarity=0.491 Sum_probs=69.4
Q ss_pred eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecch-hHHHHHhhc
Q 016486 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (388)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~-~~~v~~~~~ 159 (388)
|.|.....+|.+.+.++..- ..+|+.|+...+++.|.+.. ...+++ +.||..|.|.++.|.+++ ..+.+.++|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~--~~~dv~v~~~~~~l~v~~~~---~~~~l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K 74 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGT--KSKDVKVEITPKHLKVGVKG---GEPLLD-GELYAKVKVDESTWTLEDGKLLEITLEK 74 (85)
T ss_pred CEEEeeCCEEEEEEECCCCC--cceeEEEEEEcCEEEEEECC---CCceEc-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence 78999999999999987643 47999999999999998863 234444 579999999999999999 888899999
Q ss_pred cCCCCCCchh
Q 016486 160 QDPELKWPDI 169 (388)
Q Consensus 160 ~~~~~~wp~~ 169 (388)
.+.+..||.+
T Consensus 75 ~~~~~~W~~L 84 (85)
T cd06467 75 RNEGEWWPSL 84 (85)
T ss_pred CCCCcccccc
Confidence 8876778865
No 165
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=97.59 E-value=3.3e-05 Score=63.39 Aligned_cols=84 Identities=25% Similarity=0.499 Sum_probs=68.4
Q ss_pred eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHHhhc
Q 016486 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK 159 (388)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~~~~ 159 (388)
|.|+....||++++.++......+||+.|+-.-++|.|+++ | ..++|+ +.||..|+|.|..|.++|. .+.+.+.+
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~--g-~~~~i~-G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK--G-QPPIID-GELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC--C-CceEEe-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence 78888889999999998776678999999999999999874 3 245666 4999999999999999884 57788888
Q ss_pred cCCCCCCch
Q 016486 160 QDPELKWPD 168 (388)
Q Consensus 160 ~~~~~~wp~ 168 (388)
...+.=||.
T Consensus 77 ~~~~~wW~~ 85 (87)
T cd06492 77 INKMEWWSR 85 (87)
T ss_pred CCCCccccc
Confidence 766555654
No 166
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.54 E-value=0.00043 Score=67.85 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=49.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHH-HHHHHHHhcCCCeEEE
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE-CDVLESLSSHVRAVVA 261 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E-~~vL~~L~~~~~~VVS 261 (388)
-|+|+|.|||||||+++.|++.+. ..+++-|.+. ... ..+.....|...|..- .++.+.| +...+||.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~--~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~ 76 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDR--NDYADSKKEKEARGSLKSAVERAL-SKDTIVIL 76 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TT--SSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cch--hhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEE
Confidence 489999999999999999999852 4456644544 111 1122333444444433 3344434 44578887
Q ss_pred ecCCcccccccHHHHHhhcC----CcEEEEEcCccc
Q 016486 262 TLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM 293 (388)
Q Consensus 262 tGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~ 293 (388)
.+.-. =--+|-+.+..-+. ..+||++++.+.
T Consensus 77 Dd~nY-iKg~RYelyclAr~~~~~~c~i~~~~~~e~ 111 (270)
T PF08433_consen 77 DDNNY-IKGMRYELYCLARAYGTTFCVIYCDCPLET 111 (270)
T ss_dssp -S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHH
T ss_pred eCCch-HHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence 66431 00112222322222 349999999987
No 167
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.54 E-value=0.0029 Score=65.29 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=42.5
Q ss_pred hhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhc
Q 016486 170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAK 226 (388)
Q Consensus 170 ~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g 226 (388)
.+.|+-+...+.+. -.++|+|+|.+||||||+++.||+.+|..++. +-+++++..+
T Consensus 204 ~~~w~~i~~~vr~~-~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~ 261 (399)
T PRK08099 204 FRYWEYIPTEVRPF-FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG 261 (399)
T ss_pred HHHHHhcCHHHhhC-CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence 36788888655444 34679999999999999999999999988765 3445555443
No 168
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.53 E-value=0.00013 Score=64.02 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=21.8
Q ss_pred EEEEecCCCchHHHHHHHHHhcCC
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
|+|+|++||||||+++.|++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 789999999999999999998653
No 169
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.53 E-value=0.001 Score=70.05 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc-ceechhHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ 227 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-fID~D~lIE~~~g~ 227 (388)
++..|+++|++|+||||++..||.++|+. ++.+|.+.+.+.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 46789999999999999999999999998 77999987655554
No 170
>PLN02772 guanylate kinase
Probab=97.53 E-value=0.0015 Score=67.43 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.++.|+|+|++|+||+||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45789999999999999999998865
No 171
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0005 Score=74.17 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=71.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC---chhhhh-------------------hccCc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ---TIDSWM-------------------LAEGS 238 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~---sI~eif-------------------~~~Ge 238 (388)
...++-|.|-|+||||||.+|+.+|..||++|+.. -++|..+.|. .|++.| .-..+
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence 34567899999999999999999999999999985 3444433332 123222 23355
Q ss_pred HHHHHHHHHHHHHHhc-C---------CCeEEEecCCcccccccHHHHH-hhcC----CcEEEEEcCccc
Q 016486 239 DSVVNGECDVLESLSS-H---------VRAVVATLGGQQGAAARADKWQ-HLYA----GFTVWLSQTEAM 293 (388)
Q Consensus 239 ~~FRe~E~~vL~~L~~-~---------~~~VVStGGG~~gav~r~enr~-~L~~----g~VVyLd~~~e~ 293 (388)
.+=|++|+++..+|+. + +.-|+.-| +.-||+..+ .|+. +.-|.|.+|-+.
T Consensus 300 ~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg-----ATnRPDslDpaLRRaGRFdrEI~l~vP~e~ 364 (802)
T KOG0733|consen 300 EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG-----ATNRPDSLDPALRRAGRFDREICLGVPSET 364 (802)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe-----cCCCCcccCHHHhccccccceeeecCCchH
Confidence 6778999999888752 1 22344434 345666553 4553 458999999864
No 172
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.48 E-value=0.0011 Score=66.13 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc-ceechhHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF 224 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-fID~D~lIE~~ 224 (388)
.+..|++.|++||||||+|+.||++||++ ++.+|.+.+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 45789999999999999999999999998 68888876443
No 173
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.47 E-value=6.7e-05 Score=63.68 Aligned_cols=83 Identities=19% Similarity=0.439 Sum_probs=67.7
Q ss_pred CCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-HHH
Q 016486 77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-LVI 155 (388)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~v~ 155 (388)
.+..|.|+-.-.||++++.+|.. +..+||+.|+-.-++|.|.++..++..++|+ +.||..|++.|..|.++|.. +.+
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~-G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVLME-GEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceEEe-CcccCcccCccceEEEeCCCEEEE
Confidence 45689999999999999999986 4468999999999999998864334345555 59999999999999998855 567
Q ss_pred HhhccC
Q 016486 156 NLKKQD 161 (388)
Q Consensus 156 ~~~~~~ 161 (388)
.+.+..
T Consensus 81 ~L~K~~ 86 (102)
T cd06495 81 SLSKCS 86 (102)
T ss_pred EEEECC
Confidence 777663
No 174
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.41 E-value=0.00061 Score=65.25 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC-----cceechhHHHHHhcC-chhhhhhccCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ-TIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-----~fID~D~lIE~~~g~-sI~eif~~~Ge~~FRe~E 245 (388)
.+..|++||.|+.|||++|+.|++.|.| ..+...++..+..+. .-.++|....+++.+..|
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~ 77 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLRE 77 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHH
Confidence 3567999999999999999999988864 667778888888876 345667655566554433
No 175
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.41 E-value=0.00033 Score=66.25 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.8
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI 221 (388)
|-|.|.+||||||+++.|+..|. ..++.+|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 67899999999999999999983 3567778774
No 176
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.37 E-value=9e-05 Score=59.98 Aligned_cols=83 Identities=20% Similarity=0.482 Sum_probs=67.0
Q ss_pred eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHHhhc
Q 016486 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK 159 (388)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~~~~ 159 (388)
|+|+....+|++.+.++.. ...+|+.|+-...++.|.++ ++ ..++ .++||..|.|.|..|.++++ .+.+.+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~--~~~~dv~v~~~~~~l~v~~~-~~--~~~~-~g~L~~~I~~d~Stw~i~~~~~l~i~L~K 74 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPED--TTKEDIRIKFLPDHISIALK-DQ--APLL-EGKLYSSIDHESSTWIIKENKSLEVSLIK 74 (85)
T ss_pred CccEEeCCEEEEEEECCCC--CChhhEEEEEecCEEEEEeC-CC--CeEE-eCcccCcccccCcEEEEeCCCEEEEEEEE
Confidence 7888889999999999742 37899999999999999874 22 2333 67999999999999998666 48888888
Q ss_pred cCCCCCCchh
Q 016486 160 QDPELKWPDI 169 (388)
Q Consensus 160 ~~~~~~wp~~ 169 (388)
.+.+..||.+
T Consensus 75 ~~~~~~W~~L 84 (85)
T cd06493 75 KDEGPTWPEL 84 (85)
T ss_pred CCCCcccccc
Confidence 8777678765
No 177
>COG4639 Predicted kinase [General function prediction only]
Probab=97.34 E-value=0.00096 Score=61.18 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=62.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE-EecCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV-ATLGG 265 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV-StGGG 265 (388)
.-++|+|.+||||||.++.. -+....++.|++-.....-.-.+......+..++.++..+-+.+....-.|| ||-
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn-- 78 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN-- 78 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc--
Confidence 45899999999999999852 3467888888876544211122223333456677666666556666556777 433
Q ss_pred cccccccHHHHHhhc----C-C---cEEEEEcCccc
Q 016486 266 QQGAAARADKWQHLY----A-G---FTVWLSQTEAM 293 (388)
Q Consensus 266 ~~gav~r~enr~~L~----~-g---~VVyLd~~~e~ 293 (388)
.+++.|+.+. + | +.||+|.|.+.
T Consensus 79 -----~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~ 109 (168)
T COG4639 79 -----LRREDRRKLIDLAKAYGYKIYAIVFDTPLEL 109 (168)
T ss_pred -----CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHH
Confidence 5666665443 2 3 47888888753
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00025 Score=57.50 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
+.+++|+|++|+||||+++.||..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999999865
No 179
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.29 E-value=0.00039 Score=61.67 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHhhhhhhhcc-CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 174 ESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 174 ~sl~~~~~~~l-~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
..++..+.+.+ .+..|+|.|.+||||||+.|.+++.||+.
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34444444444 46789999999999999999999999974
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.28 E-value=0.00024 Score=60.96 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.5
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
+|+|+|++|+|||++++.||+.++.+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 48999999999999999999999988754
No 181
>PRK05439 pantothenate kinase; Provisional
Probab=97.28 E-value=0.0015 Score=65.51 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI 221 (388)
...|.|.|.+||||||+++.|++.|+ ...+.+|+++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34688999999999999999999875 3467788875
No 182
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.27 E-value=0.0012 Score=65.64 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI 221 (388)
+..|-|.|++||||||+++.|+..+. ...+.+|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45677999999999999999988774 3456777654
No 183
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.27 E-value=0.0018 Score=63.74 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=72.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHh-cCCCe--EEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRA--VVA 261 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~-~~~~~--VVS 261 (388)
.-|++.|++|||||+..+.|- -+||.++|- =+++.+.. + ++.... ....+ ||-
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvDNLPp~Llp~~~-----------------~----~~~~~~~~~~kvAv~iD 59 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVDNLPPQLLPKLA-----------------D----LMLTLESRITKVAVVID 59 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHH-hcCeeeecCCCHHHHHHHH-----------------H----HHhhcccCCceEEEEEe
Confidence 358899999999999999775 468888773 12222222 1 111111 11222 222
Q ss_pred e-cCCcccccccHHHHHhhcC-C----cEEEEEcCccc------c-------ccCHHHHHHHHHHHhH---hccccCcEE
Q 016486 262 T-LGGQQGAAARADKWQHLYA-G----FTVWLSQTEAM------D-------ENSAKEEARRHVKDGK---LGYSNADVV 319 (388)
Q Consensus 262 t-GGG~~gav~r~enr~~L~~-g----~VVyLd~~~e~------D-------~~d~~e~l~~l~~eR~---~~Y~~AD~v 319 (388)
. ++.+ .-.-.+....|+. + -++||+++.++ + .... .-+..+-.||+ |....||++
T Consensus 60 iRs~~~--~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~-~l~~~I~~ERelL~pLk~~A~~v 136 (286)
T COG1660 60 VRSREF--FGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDG-LLLEAIAKERELLAPLREIADLV 136 (286)
T ss_pred cccchh--HHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccC-cHHHHHHHHHHHHHHHHHHhhhE
Confidence 1 1111 0111122334442 2 39999999887 1 0110 13444555564 556669999
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHH
Q 016486 320 VKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 320 V~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
|+++..++. +..+.|...+..
T Consensus 137 IDTs~ls~~---~Lr~~i~~~f~~ 157 (286)
T COG1660 137 IDTSELSVH---ELRERIRTRFLG 157 (286)
T ss_pred eecccCCHH---HHHHHHHHHHcc
Confidence 999999864 777777777664
No 184
>PRK06620 hypothetical protein; Validated
Probab=97.24 E-value=0.0011 Score=62.59 Aligned_cols=103 Identities=6% Similarity=0.056 Sum_probs=55.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHH-HHHHHHHhcCCC-eEEEecC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE-CDVLESLSSHVR-AVVATLG 264 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E-~~vL~~L~~~~~-~VVStGG 264 (388)
..++|.|++|+|||++++++++..+..++......++..+. . +++--++-+.+.+.+ ..++..+...+. +|+++--
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~-~-d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEK-Y-NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhc-C-CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 57999999999999999999999987776644433332221 1 111111111222111 122333333344 4444321
Q ss_pred CcccccccHHHHHhhcCCcEEEEEcCcc
Q 016486 265 GQQGAAARADKWQHLYAGFTVWLSQTEA 292 (388)
Q Consensus 265 G~~gav~r~enr~~L~~g~VVyLd~~~e 292 (388)
......+ ++-+-.+..|.++-|..+.+
T Consensus 123 ~p~~l~l-~~L~SRl~~gl~~~l~~pd~ 149 (214)
T PRK06620 123 KSRNFTL-PDLSSRIKSVLSILLNSPDD 149 (214)
T ss_pred Cccccch-HHHHHHHhCCceEeeCCCCH
Confidence 1100122 45555666788998887764
No 185
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0019 Score=65.18 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCchh--hhh---hccCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQTID--SWM---LAEGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~sI~--eif---~~~Ge~~FRe~E 245 (388)
+.+.|+++|..|+|||-|+--||.+++-..|..|.+ +++.-|.+-. ..+ .+.-...|+..-
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 567899999999999999999999999888888876 1222222110 011 233445788877
Q ss_pred HHHHHHHhcCCCeEEEecCC
Q 016486 246 CDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG 265 (388)
..+.+.+.+.+.+=|..||+
T Consensus 86 ~~aie~I~~rgk~PIv~GGs 105 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGS 105 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCc
Confidence 88888888877665555665
No 186
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.21 E-value=0.0012 Score=65.95 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=54.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC 246 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~ 246 (388)
+..|+|+|+.|||||.+|-.||++. -..|+.|.+- ++..+. .+-+.-+...-..|.+.-.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~ 82 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL 82 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence 3579999999999999999999995 5999999872 111111 1112223344456777777
Q ss_pred HHHHHHhcCCCeEEEecCC
Q 016486 247 DVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 247 ~vL~~L~~~~~~VVStGGG 265 (388)
++++++...+...|-|||-
T Consensus 83 ~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 83 KIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHCCCCEEEEeCc
Confidence 7888887766666666654
No 187
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.00053 Score=73.14 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=59.4
Q ss_pred cchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHH
Q 016486 126 FITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALE 205 (388)
Q Consensus 126 ~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~ 205 (388)
.....+.+..|++-+| ---++|++-.|+... ++-|-..-+.+.+.+.++...|+|++||||||.-+.
T Consensus 63 ~~~~d~~elW~eKy~P------~t~eeLAVHkkKI~e-------Vk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkv 129 (634)
T KOG1970|consen 63 NEKEDEFELWVEKYKP------RTLEELAVHKKKISE-------VKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKV 129 (634)
T ss_pred CCCccccchhHHhcCc------ccHHHHhhhHHhHHH-------HHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHH
Confidence 3445567778888888 334666666665433 256776444567788888999999999999999999
Q ss_pred HHHhcCCcceec
Q 016486 206 LAVGLGYTPLST 217 (388)
Q Consensus 206 LAk~LG~~fID~ 217 (388)
||+.||+.+++-
T Consensus 130 Lskelg~~~~Ew 141 (634)
T KOG1970|consen 130 LSKELGYQLIEW 141 (634)
T ss_pred HHHhhCceeeee
Confidence 999999988764
No 188
>PRK06893 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.0037 Score=59.14 Aligned_cols=33 Identities=3% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-----CCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D 218 (388)
...++|.|++|+|||++++++|..+ +..|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3568999999999999999999875 66777775
No 189
>PHA00729 NTP-binding motif containing protein
Probab=97.08 E-value=0.0005 Score=66.08 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
.+|+|+|.+|+||||+|..||++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999863
No 190
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.07 E-value=0.0042 Score=59.12 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l 220 (388)
+.+++|.|++|+|||++++.++..+. ..|+..+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 46899999999999999999998765 467777663
No 191
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.04 E-value=0.00068 Score=68.39 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
.+++|+|+|++|+||||+++.||+.||++++-
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 46889999999999999999999999999873
No 192
>PF13173 AAA_14: AAA domain
Probab=97.03 E-value=0.00066 Score=58.18 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC----CcceechhHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLET 223 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~lIE~ 223 (388)
+++.++|.|++|+||||+.+.+++.+. +-+++.|+.-..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 357799999999999999999999876 888888876543
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.02 E-value=0.00079 Score=55.35 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D 218 (388)
.+..++|+|++|+|||++++.+++.+ +.+++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 36789999999999999999999998 65555544
No 194
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.01 E-value=0.00068 Score=72.19 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=45.5
Q ss_pred cchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 148 IDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 148 ~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
-..++|++..|+... ++.|-.-. +.+...++.++|.||+||||||..+.||+.||+.+++-
T Consensus 16 ~~~~eLavhkkKv~e-------V~~wl~~~--~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 16 KTLDELAVHKKKVEE-------VRSWLEEM--FSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CCHHHhhccHHHHHH-------HHHHHHHH--hccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 566778887777543 26676543 23344456789999999999999999999999877763
No 195
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.00 E-value=0.005 Score=66.84 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=29.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL 221 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI 221 (388)
..|.|.|++||||||+++.|+..+ +...|..|++.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 568899999999999999999998 45678888764
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.99 E-value=0.00066 Score=65.56 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=29.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI 215 (388)
..+.+|+|+|++|+|||++++.||+.+|.+|+
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 35789999999999999999999999999888
No 197
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0065 Score=56.41 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=82.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc--ceechhHHHHHh--------cCchhhhhhccCcHHHH----------HH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFA--------KQTIDSWMLAEGSDSVV----------NG 244 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~D~lIE~~~--------g~sI~eif~~~Ge~~FR----------e~ 244 (388)
.|+-|+||||+|+||-|+...+...|.-. +.=.-.+|-+-+ -.+-.++....++-.|. -+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 57889999999999999999888888533 222222222111 11223333332332221 01
Q ss_pred HHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------cccCHHHHHHHHHHHhHhcccc--
Q 016486 245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------DENSAKEEARRHVKDGKLGYSN-- 315 (388)
Q Consensus 245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D~~d~~e~l~~l~~eR~~~Y~~-- 315 (388)
=.++-..|. .+..||+-|.= ..-|+.++...+-.+|.|.+++++ .+.+..+++..++. |...|..
T Consensus 84 p~eId~wl~-~G~vvl~NgSR----a~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~-R~a~~~~~~ 157 (192)
T COG3709 84 PAEIDLWLA-AGDVVLVNGSR----AVLPQARRRYPQLLVVCITASPEVLAQRLAERGRESREEILARLA-RAARYTAGP 157 (192)
T ss_pred chhHHHHHh-CCCEEEEeccH----hhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHH-hhcccccCC
Confidence 123333443 35577776643 445555655555679999999987 13333555666655 5556653
Q ss_pred CcE-EEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 316 ADV-VVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 316 AD~-vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
.|+ +|++++. ++...+..+..|.+.
T Consensus 158 ~dv~~idNsG~----l~~ag~~ll~~l~~~ 183 (192)
T COG3709 158 GDVTTIDNSGE----LEDAGERLLALLHQD 183 (192)
T ss_pred CCeEEEcCCCc----HHHHHHHHHHHHHhh
Confidence 664 3555553 234555555555533
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0041 Score=67.57 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC---chhhhh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ---TIDSWM 233 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~---sI~eif 233 (388)
.++.|.|.|+||||||+++|.||..-+..|+.. -+++-++.|. .+.++|
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF 520 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVF 520 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHH
Confidence 467899999999999999999999999999885 6777777775 344444
No 199
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.92 E-value=0.00084 Score=69.56 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=31.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
+...+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 346789999999999999999999999999986653
No 200
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.91 E-value=0.0011 Score=66.50 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=37.6
Q ss_pred hhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 171 ~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
..|+-+...+.+.+ ++.|+|+|.+|+||||+++.|++.+|.+++.
T Consensus 148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 46877776665655 4589999999999999999999999998865
No 201
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=96.90 E-value=0.00056 Score=63.24 Aligned_cols=92 Identities=23% Similarity=0.446 Sum_probs=76.0
Q ss_pred cCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHH
Q 016486 75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLV 154 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v 154 (388)
.+...+|+|+-.=.|||+++.++... +.+++|.|.-...++.|.++-+. .|=-+.||+.|++.|..|.|+|+.++
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~----~ildG~L~~~vk~des~WtiEd~k~i 89 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQP----PILDGELSHSVKVDESTWTIEDGKMI 89 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCC----ceecCccccccccccceEEecCCEEE
Confidence 44556899999999999999999988 99999999999999888776544 45568999999999999999999887
Q ss_pred HH-hhccCCCCCCchhhhhhHHhhh
Q 016486 155 IN-LKKQDPELKWPDIVESWESLTA 178 (388)
Q Consensus 155 ~~-~~~~~~~~~wp~~~~~W~sl~~ 178 (388)
+. .++... ++.|.++--
T Consensus 90 ~i~l~K~~~-------~eWW~~ll~ 107 (179)
T KOG2265|consen 90 VILLKKSNK-------MEWWDSLLE 107 (179)
T ss_pred EEEeeccch-------HHHHHHHHc
Confidence 44 445544 488998874
No 202
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.88 E-value=0.00087 Score=64.68 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=25.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+++|.|+||+||||+|+.+|+.+|..|.-+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 4799999999999999999999999887554
No 203
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0031 Score=64.71 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=81.4
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhc---CCccee--chhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhc
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSS 254 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID--~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~ 254 (388)
-.-.+|..|+|+|.+|+|||||.-+|-+.| |+|++. +|.+.. -..+.+. | .++.++..|++ .++.+-...
T Consensus 45 ~~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirh-gl~knlg--fs~edreenirri-aevaklfad 120 (627)
T KOG4238|consen 45 RGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRH-GLNKNLG--FSPEDREENIRRI-AEVAKLFAD 120 (627)
T ss_pred cCCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhh-hhhhccC--CCchhHHHHHHHH-HHHHHHHhc
Confidence 455678999999999999999999998876 677765 555433 2222222 3 24455666654 334433333
Q ss_pred CCCeEE-EecCCcccccccHHHHHhhcC-----CcEEEEEcCccc-cccCHHHHHHHHHHHhH-----------hcccc-
Q 016486 255 HVRAVV-ATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM-DENSAKEEARRHVKDGK-----------LGYSN- 315 (388)
Q Consensus 255 ~~~~VV-StGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~-D~~d~~e~l~~l~~eR~-----------~~Y~~- 315 (388)
.+-+.| |...-+ .-.|...| .++. -+-||++++.+. +..+ ...+|.+-+ ..|+.
T Consensus 121 aglvcitsfispf--~~dr~~ar-kihe~~~l~f~ev~v~a~l~vceqrd----~k~lykkaragei~gftgids~ye~p 193 (627)
T KOG4238|consen 121 AGLVCITSFISPF--AKDRENAR-KIHESAGLPFFEVFVDAPLNVCEQRD----VKGLYKKARAGEIKGFTGIDSDYEKP 193 (627)
T ss_pred CCceeeehhcChh--hhhhhhhh-hhhcccCCceEEEEecCchhhhhhcC----hHHHHhhhhccccccccccccccCCC
Confidence 322222 111111 01122222 2332 358899998876 2222 233443321 23543
Q ss_pred --CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 316 --ADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 316 --AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+.++++++..++ .+.++++++.|+..
T Consensus 194 e~~e~vl~t~~~~v---~~cvqqvve~lq~~ 221 (627)
T KOG4238|consen 194 ETPERVLKTNLSTV---SDCVQQVVELLQEQ 221 (627)
T ss_pred CChhHHhhcCCchH---HHHHHHHHHHHHhc
Confidence 446666665544 37777777777653
No 204
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.004 Score=62.48 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=33.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
..-|+|+|+.+||||-+|-.||+++|.+.|++|.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 45699999999999999999999999999999997
No 205
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.83 E-value=0.00087 Score=59.39 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPL 215 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fI 215 (388)
+|+|+|.+|+||||+++.||+. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4899999999999999999999 99988
No 206
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.82 E-value=0.0065 Score=56.66 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLET 223 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~ 223 (388)
+..++|.|.+|+|||++++.++..+ ...|++..+..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA 84 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence 4689999999999999999999987 6788888776544
No 207
>PHA02244 ATPase-like protein
Probab=96.80 E-value=0.0015 Score=67.08 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
.+.+|+|+|++|||||++++.||..+|++|+....+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 4678999999999999999999999999999776543
No 208
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.79 E-value=0.00097 Score=60.98 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=30.4
Q ss_pred EEEEecCCCchHHHHHHHHHhc-----CCcceechhHHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE 222 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE 222 (388)
|.|.|.+||||||+++.|++.| +...|.+|++..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 7899999999999999999997 357889999875
No 209
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00076 Score=68.31 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+-|.|-||||.|||++.|+||++|..+..|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 35688999999999999999999998776554
No 210
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.77 E-value=0.0011 Score=60.61 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC--Ccceechh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE 219 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~ 219 (388)
+.|+|+|.+||||||+|..|++.++ +.|+.+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5799999999999999999999987 55666643
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.72 E-value=0.0038 Score=65.62 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|.|++|+|||++++.||..++++|+..+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 467999999999999999999999999998764
No 212
>CHL00181 cbbX CbbX; Provisional
Probab=96.67 E-value=0.0017 Score=64.03 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C------CcceechhHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G------YTPLSTKELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G------~~fID~D~lIE~~~g 226 (388)
.+.+|+|.|++|+||||+|+.+|+.+ | +..++.++++.+..|
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g 108 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG 108 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence 46679999999999999999999976 2 234455666655544
No 213
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.66 E-value=0.013 Score=58.73 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
++..|.|+|++|+||||+...||..+ | .-++++|-.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 46789999999999999999999887 2 455777753
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.65 E-value=0.037 Score=61.13 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=31.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK 218 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D 218 (388)
...+.+++|+|++|+|||++++.||+++ ++.++..|
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3456789999999999999999999998 77777766
No 215
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.64 E-value=0.0018 Score=63.51 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---------CcceechhHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------~~fID~D~lIE~~~g 226 (388)
.+.+|+|.|++|+||||+|+.+|+.+. +.+++.++++.+..|
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 456899999999999999999988773 334455666654444
No 216
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.60 E-value=0.002 Score=66.90 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+.+|+|+|++|+|||++++.||+.++++|+-.|
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 4578999999999999999999999998887444
No 217
>PRK10646 ADP-binding protein; Provisional
Probab=96.58 E-value=0.0035 Score=56.96 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=31.3
Q ss_pred hHHhhhhhhhccC-CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 173 WESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 173 W~sl~~~~~~~l~-g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
...+++.+.+.++ +..|+|.|..|+||||+.|.+++.||.
T Consensus 14 t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 14 TLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3344444444444 568899999999999999999999996
No 218
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0019 Score=70.77 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=33.7
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
...++|.-++|+||||.|||++|+-+|+.||..|+-.
T Consensus 345 ~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 345 TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 3666888999999999999999999999999999874
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0054 Score=66.50 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~ 227 (388)
+.-|.|.|+||||||-+||++|..-|..||.. -+++-++.|.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 46799999999999999999999999999984 5777777665
No 220
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.52 E-value=0.015 Score=56.39 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI 215 (388)
..+++|.|++|+|||++++.+|+.++..+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999987653
No 221
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.51 E-value=0.0025 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
.+..|+|.|..||||||+.|.+++.||..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999864
No 222
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.51 E-value=0.0046 Score=63.86 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 4678999999999999999999999999988763
No 223
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.51 E-value=0.0024 Score=67.67 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|++|||||.+++.+|..+|++|+..|
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4578999999999999999999999999998865
No 224
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.49 E-value=0.0022 Score=61.64 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+++|.|++|+||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 225
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.47 E-value=0.025 Score=57.51 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=67.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
...+++.|+.|||||+|...|++. |+..+|+-.+.+- .|-....+- .+..-..|...-...|..+.....++|=+-+
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-ccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 345789999999999999999876 8889999887653 232333222 2233345654444444444442345553221
Q ss_pred Cccc-ccccHHHHHhhcCCcEEEEEcCccc
Q 016486 265 GQQG-AAARADKWQHLYAGFTVWLSQTEAM 293 (388)
Q Consensus 265 G~~g-av~r~enr~~L~~g~VVyLd~~~e~ 293 (388)
-.=| +.+-+.-|+.|+++.+|+|++|.+.
T Consensus 219 ~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~ 248 (345)
T PRK11784 219 RRIGRVHLPEALYEAMQQAPIVVVEAPLEE 248 (345)
T ss_pred ccccCccCCHHHHHHHhhCCEEEEECCHHH
Confidence 1001 2444556789999999999999864
No 226
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.44 E-value=0.0027 Score=65.01 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.++.|+|.|++|+|||++++.+|..++.+|+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 356799999999999999999999999888765
No 227
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.43 E-value=0.011 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=27.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
.|+++|++|+||||+++.||..+ | .-++|+|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 47899999999999999998876 4 456888843
No 228
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.41 E-value=0.0072 Score=51.96 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=26.3
Q ss_pred EEEEecCCCchHHHHHHHHHhc---CC--cceechh
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---GY--TPLSTKE 219 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~ 219 (388)
|.|.|..|+||||++..||+.+ |. -.+|+|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 8899999999999999999877 54 4478875
No 229
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0028 Score=64.19 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=33.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
.+.+.||.|+||.|||||-+|+-||+.|+.||-=.|.
T Consensus 94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 4667899999999999999999999999999986664
No 230
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.39 E-value=0.002 Score=63.71 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=30.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-----CcceechhHHH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE 222 (388)
|.|+|.+||||||+++.|++.|+ ..+|++|+++.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 78999999999999999998774 56899999875
No 231
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.37 E-value=0.024 Score=55.20 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=59.3
Q ss_pred CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHh
Q 016486 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157 (388)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~ 157 (388)
.+.|+|.-.+..+.+|++.-+. .++.++.||+..+.... ..-.+| . +.++++. .+
T Consensus 18 ~g~~~~~~~~~~~~~Rv~~~p~-----------~~G~~~~iR~~~~~~~~--~~l~~l----------g-~~~~~~~-~l 72 (264)
T cd01129 18 DGRIRLKLKGREIDLRVSTLPT-----------IYGESVVLRILDKKNQI--LDLEKL----------G-LKPENLE-IF 72 (264)
T ss_pred CceEEEEECCcEEEEEEEEeec-----------CCCCEEEEEEeCCccCC--CCHHHc----------C-CCHHHHH-HH
Confidence 4567776677778888876442 24788999998766541 111222 1 1222211 11
Q ss_pred hccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHHH
Q 016486 158 KKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETF 224 (388)
Q Consensus 158 ~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~~ 224 (388)
+. +. ...+..|+|+|.+||||||+.+.+...+. ..++-.++-+|-.
T Consensus 73 ~~----------------~~-----~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 73 RK----------------LL-----EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred HH----------------HH-----hcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 11 11 11234699999999999999998866653 4456665555533
No 232
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0026 Score=69.77 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
...+|+.|+|+||||.|||+|||-+|+.||..|+-
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 55678999999999999999999999999999875
No 233
>PRK04195 replication factor C large subunit; Provisional
Probab=96.33 E-value=0.0055 Score=64.25 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
...++|.|++|+||||+++.||+.+|+.+++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 578999999999999999999999999998763
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.32 E-value=0.0069 Score=66.73 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=34.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g 226 (388)
.++.|.|.|++|||||++++.+|..++.+|+..+ +++.+..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 3567999999999999999999999999998754 44444443
No 235
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.32 E-value=0.0035 Score=53.74 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE 222 (388)
.+..+.|+|++||||||+.+++. -|--.+++|++..
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~ 49 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE 49 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence 46789999999999999999988 3445567776643
No 236
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.31 E-value=0.0034 Score=57.36 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=26.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC----cceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY----TPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~----~fID~D 218 (388)
.++.|+|++|+|||.+++.||+.|.. +++-.|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 57999999999999999999999995 554443
No 237
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.30 E-value=0.0041 Score=62.68 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 567999999999999999999999998887653
No 238
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.0083 Score=62.23 Aligned_cols=35 Identities=14% Similarity=-0.020 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
-.+.+|-|+||+||||+|+++|+..++.|.-....
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 35789999999999999999999999999877554
No 239
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.28 E-value=0.0086 Score=62.69 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+..|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 4578999999999999999999999999888653
No 240
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.0084 Score=58.80 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----C---CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G---~~fID~D~l 220 (388)
++..|.|+|+.|+||||++..||..+ | ..+|++|.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 35689999999999999999998866 3 458899875
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.27 E-value=0.0034 Score=57.86 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI 221 (388)
.+.+|+|+|++|+|||++++.+++.+. +.+++++.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 357899999999999999999998763 5577776654
No 242
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.26 E-value=0.039 Score=55.41 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=64.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh--hccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM--LAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif--~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
..+++.|+.|+|||.|.+.|++. |+..||+...-+ ..|.....+- .+.....|+..-...|..+.....+||-+-+
T Consensus 128 ~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~-hrGs~fG~~~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e~es 205 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLAN-HRGSSFGALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDES 205 (311)
T ss_pred ceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHH-hcCcccCCCCCCCCCchHHHHHHHHHHHHhCCCCceEEEEeCc
Confidence 45679999999999999999887 889999988643 3332111111 1112356643323333333222345664433
Q ss_pred Cccccccc-HHHHHhhcCCcEEEEEcCccc
Q 016486 265 GQQGAAAR-ADKWQHLYAGFTVWLSQTEAM 293 (388)
Q Consensus 265 G~~gav~r-~enr~~L~~g~VVyLd~~~e~ 293 (388)
..-|.+.- +.-|+.|+.+.+|+|+.|.+.
T Consensus 206 ~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~ 235 (311)
T TIGR03167 206 RRIGRVALPDALFEAMRAAPLVELEASLEE 235 (311)
T ss_pred hhhccccCCHHHHHHHhhCCEEEEECCHHH
Confidence 32122333 446889999999999999864
No 243
>CHL00176 ftsH cell division protein; Validated
Probab=96.25 E-value=0.008 Score=65.65 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 467999999999999999999999999998754
No 244
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.24 E-value=0.0029 Score=53.23 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=67.9
Q ss_pred ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccC-CCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS-GSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~ 158 (388)
.|.|+....+|.+++.+++. +|+.|+...+++.|.+.-. |...-.++. .||..|+|.++.|.+.+..+.+.++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~-----~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~ 75 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA-----KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLR 75 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC-----CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEE
Confidence 58889999999999999874 8999999999999988542 233234444 8999999999999998888889999
Q ss_pred ccCCCCCCchh
Q 016486 159 KQDPELKWPDI 169 (388)
Q Consensus 159 ~~~~~~~wp~~ 169 (388)
+.+.+..||.+
T Consensus 76 K~~~~~~W~~L 86 (108)
T cd06465 76 KKEAGEYWPRL 86 (108)
T ss_pred ECCCCCCCccc
Confidence 98734467766
No 245
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0085 Score=61.25 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=33.4
Q ss_pred hhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
+.....++||.+||+.|.|||-+||.||+..|.||+-.
T Consensus 44 lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 44 LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred HhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 34555689999999999999999999999999999854
No 246
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.23 E-value=0.1 Score=48.33 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=43.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHh-cCCCeEEEecCC
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRAVVATLGG 265 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG-~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~-~~~~~VVStGGG 265 (388)
|+=|+..||||||+|..|+..+| |..+-.|++- |+. ...|- ..+++.|. ....+||+.=.-
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~----~k~---------~~~f~---~~~l~~L~~~~~~vViaDRNN 64 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT----GKR---------KPKFI---KAVLELLAKDTHPVVIADRNN 64 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC----CCC---------HHHHH---HHHHHHHhhCCCCEEEEeCCC
Confidence 45588999999999999999999 9999999962 221 12332 24565663 334688886654
No 247
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.23 E-value=0.0053 Score=54.16 Aligned_cols=43 Identities=21% Similarity=0.089 Sum_probs=25.6
Q ss_pred hhhhHHhhhhh--hhccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 170 VESWESLTAGS--MQLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 170 ~~~W~sl~~~~--~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
.+-|+.+...+ .....+.+|+|+|.+|+|||++.+.+.+.+.-
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34455555433 33445688999999999999999988877643
No 248
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.23 E-value=0.034 Score=60.77 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|+|++|+|||++++.+|..++.+|+..+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 356999999999999999999999999988754
No 249
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.21 E-value=0.0071 Score=64.49 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
.++.|+|.|++|+|||++++.+|..|+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35679999999999999999999999765
No 250
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.19 E-value=0.0031 Score=56.07 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=22.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
+|.|.|.+|.||||+++.||+.+|..|...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 478999999999999999999999988754
No 251
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.18 E-value=0.0043 Score=61.64 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=32.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
..+.+.+++|.|++|+|||++++.+|+.+|++|+..
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 455789999999999999999999999999888764
No 252
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.015 Score=64.52 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~ 227 (388)
++-+.|+|+||+|||-+||++|-.-|.||+.. -+++|-..|.
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGV 387 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhccc
Confidence 46799999999999999999999999999984 4556655554
No 253
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.12 E-value=0.031 Score=55.47 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETF 224 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~ 224 (388)
.+.+|+++|.+||||||+.+.|...+ +...+-..+..|-.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 35789999999999999999999886 34555556655533
No 254
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.12 E-value=0.0047 Score=63.22 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
+++.+.|+|++|+||||+++.|++.|+.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4577899999999999999999999975
No 255
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.016 Score=54.74 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=79.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCccee---c--------------hhHHHHHhcC---chhhhhhccCcHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS---T--------------KELLETFAKQ---TIDSWMLAEGSDSVVN 243 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID---~--------------D~lIE~~~g~---sI~eif~~~Ge~~FRe 243 (388)
.+|..|+|-|..+|||||.+..|.+.+. +-.+ . |.++.+...+ .|.-+|....++...
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~- 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS- 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH-
Confidence 3688999999999999999999988773 2211 1 2222222221 233445554444443
Q ss_pred HHHHHHHHHhcCCCeEEE---ecCCcccccccH-----------HHHHhhcCCcEEEEEcCcccc------ccCH---HH
Q 016486 244 GECDVLESLSSHVRAVVA---TLGGQQGAAARA-----------DKWQHLYAGFTVWLSQTEAMD------ENSA---KE 300 (388)
Q Consensus 244 ~E~~vL~~L~~~~~~VVS---tGGG~~gav~r~-----------enr~~L~~g~VVyLd~~~e~D------~~d~---~e 300 (388)
.+.+++.+...+||- -+| +++.. ....+++++.|+||+++++.- +.+. .+
T Consensus 81 ---~i~e~l~kg~~~ivDRY~~SG----vAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~ 153 (208)
T KOG3327|consen 81 ---LIKEKLAKGTTLIVDRYSFSG----VAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVA 153 (208)
T ss_pred ---HHHHHHhcCCeEEEecceecc----hhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHH
Confidence 344455543334442 121 11111 112345568999999999871 1111 11
Q ss_pred HHHHHHHHhHhcccc--Cc-EEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 301 EARRHVKDGKLGYSN--AD-VVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 301 ~l~~l~~eR~~~Y~~--AD-~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
..++...-++..-+. .. .+|+.+ .. .++|.+.|...++..+..
T Consensus 154 fqekv~~~~q~l~r~e~~~~~~vDAs--~s--ve~V~~~V~~i~e~~~~~ 199 (208)
T KOG3327|consen 154 FQEKVLVFFQKLLRKEDLNWHVVDAS--KS--VEKVHQQVRSLVENVLSE 199 (208)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEecC--cc--HHHHHHHHHHHHHHhccC
Confidence 122222222333332 22 344444 22 568988888888876654
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.027 Score=58.95 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l 220 (388)
++..|+|+|++|+||||++..||..+ | ..++++|.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 35679999999999999999999754 2 567888885
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.09 E-value=0.013 Score=54.66 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=28.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l 220 (388)
+.|+|+|+.|+||||....||.++. ..++.+|.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 5799999999999999998998874 567778866
No 258
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.06 E-value=0.0059 Score=62.76 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
..+++|.|++|+||||+++.+|+.++..|+..+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 458999999999999999999999998887654
No 259
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.06 E-value=0.0029 Score=49.99 Aligned_cols=83 Identities=20% Similarity=0.400 Sum_probs=67.4
Q ss_pred eecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccC
Q 016486 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (388)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~ 161 (388)
+|.+...+|-+.+.+++. ..+|+.|+-..+++.|++...+...-.++. .||..|.|.+.-|.+.+..+.+.+++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~---~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNV---DKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CccccCCEEEEEEEECCC---CHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 356677889999988864 378899999999999987765444556666 6999999999999999999989998887
Q ss_pred CCCCCchh
Q 016486 162 PELKWPDI 169 (388)
Q Consensus 162 ~~~~wp~~ 169 (388)
. ..||.+
T Consensus 77 ~-~~W~~L 83 (84)
T cd06466 77 P-GSWPSL 83 (84)
T ss_pred C-CCCccC
Confidence 6 478865
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.04 E-value=0.025 Score=55.39 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
+++.|.|+|++|+||||++..||..+ | ..++|+|-+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35689999999999999999999877 4 456888853
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.04 E-value=0.1 Score=58.54 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=29.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK 218 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D 218 (388)
...+.+++|+|++|+|||++++.||+.+ ++.++..|
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3456789999999999999999999987 35666655
No 262
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.01 E-value=0.0088 Score=57.66 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=29.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcc-eechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f-ID~D~lIE~~ 224 (388)
+.|.|+|++||||||+++.+.+ .|.++ +.+-+.|.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI 38 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence 3589999999999999997755 47777 8876666544
No 263
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.01 E-value=0.0082 Score=54.47 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.3
Q ss_pred hhcc-CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 181 MQLL-KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 181 ~~~l-~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
.+.+ .+..|+|.|.-||||||+.|.+++.||.
T Consensus 19 ~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 19 AEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3444 6889999999999999999999999994
No 264
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.00 E-value=0.02 Score=54.21 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=23.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..++|+|++|+||||+++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999886
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0057 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.++|+++|+||+||||+.+.+|+.|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 47899999999999999999998874
No 266
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.96 E-value=0.014 Score=60.29 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAKQ 227 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g~ 227 (388)
+.-+.|-|++|||||.+++++|+.+|..||-++ ++..+.+|.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 445778899999999999999999999987654 455455554
No 267
>PRK06526 transposase; Provisional
Probab=95.96 E-value=0.015 Score=56.41 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+.+|+|+|++|+|||+++..|+..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 46799999999999999999998765
No 268
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.96 E-value=0.0068 Score=60.17 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
..+++|.|++|+||||+++.+|+.++..+.-
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 4579999999999999999999999987643
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.023 Score=59.20 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=29.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-------CCcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~l 220 (388)
+..|.|+|+.|+||||++..||..+ ...+|++|.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5689999999999999888887654 2678899985
No 270
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.94 E-value=0.021 Score=56.58 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=67.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC-------cceechhH------HHHHh---cCchhhhhhccCcHHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKEL------LETFA---KQTIDSWMLAEGSDSVVNGECDV 248 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fID~D~l------IE~~~---g~sI~eif~~~Ge~~FRe~E~~v 248 (388)
.+..|.|.|.+|+||||+++.|+..|.. ..|-+|-+ +++.- .+..++ .++-..|.+.-.++
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe---SyD~~~ll~fl~~v 157 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE---SYDVAALLRFLSDV 157 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc---cccHHHHHHHHHHH
Confidence 3567999999999999999999998852 23334433 33221 111121 12233443332222
Q ss_pred HHH----------------------HhcCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccccccCHHHHHHH
Q 016486 249 LES----------------------LSSHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAMDENSAKEEARR 304 (388)
Q Consensus 249 L~~----------------------L~~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~D~~d~~e~l~~ 304 (388)
-.. +....++||.-|-. +....+.|..+.. +++||+|++.+ .+++
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~n---vLq~~~p~~~~sdffDfSIyvDa~~~--------~le~ 226 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNN---VLQDGEPWLFLSDFFDFSIYVDADEE--------LLEE 226 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechh---hhcCCCccccccccceEEEEecCCHH--------HHHH
Confidence 210 01123467776755 3445556777766 68999999874 4667
Q ss_pred HHHHhHhcccc
Q 016486 305 HVKDGKLGYSN 315 (388)
Q Consensus 305 l~~eR~~~Y~~ 315 (388)
.|.+|.-.+..
T Consensus 227 wyi~Rfl~~g~ 237 (283)
T COG1072 227 RYIERFLKFGL 237 (283)
T ss_pred HHHHHHHhccc
Confidence 77777654443
No 271
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.93 E-value=0.064 Score=55.77 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=29.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLE 222 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE 222 (388)
..++|.|++|+|||++++.++..+ + ..|+..+++..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~ 191 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 191 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 569999999999999999999987 3 34677766544
No 272
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.052 Score=56.43 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCCCCCchhhhhhHHhhhhhh---------hccCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 161 DPELKWPDIVESWESLTAGSM---------QLLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 161 ~~~~~wp~~~~~W~sl~~~~~---------~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
.....|+...+.|..+...+. ..-++..|.|+|+.|+||||+...||..+ | ..++++|.+
T Consensus 172 ~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 172 FKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred ccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 344566776666776654332 12246789999999999999999999766 2 568999976
No 273
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.91 E-value=0.0063 Score=55.54 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|+|+|.+|+||||+.+.+.+.|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 274
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.90 E-value=0.007 Score=50.70 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++..++|.|.+|+|||++.+.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35779999999999999999999987
No 275
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.88 E-value=0.044 Score=60.67 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.|..|.|+|.+||||||++|+|...+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999999876
No 276
>PF05729 NACHT: NACHT domain
Probab=95.87 E-value=0.0074 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+.++|.|.+|+||||+.+.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3589999999999999999998874
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=95.86 E-value=0.0097 Score=57.73 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lIE 222 (388)
++.+++|+|++|+|||+++..|+..+ |+ .|+++.+++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 46789999999999999999997654 43 4555555554
No 278
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.021 Score=59.73 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
....|.|.|++|+|||.+|+.+|..++.+|+..+.-
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 345799999999999999999999999999987654
No 279
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.79 E-value=0.0083 Score=66.67 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
++..++|+|++|+|||++++.||+.++.+|+-.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 566899999999999999999999999888754
No 280
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.78 E-value=0.0081 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 467899999999999999999999876
No 281
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.78 E-value=0.011 Score=54.18 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA 225 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~ 225 (388)
++.+++|.|.+|+|||.++..++..+ ...|++..+++++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 46899999999999999999998755 367888899888765
No 282
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.0079 Score=58.67 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=28.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~ 219 (388)
--+|..|.|+|++||||||+-+++|-.. |--.+++..
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~ 66 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP 66 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc
Confidence 3468899999999999999999999765 334455543
No 283
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.0081 Score=58.59 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=31.0
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechhH
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKEL 220 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~l 220 (388)
-.--+|.++-|+|.+||||||+++.||-.. |--.+|+..+
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 345578999999999999999999999765 3445555443
No 284
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0092 Score=62.60 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=32.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
.|.+.||+|+|+.|||||-+++-||+.|+.||.=+|-
T Consensus 223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDc 259 (564)
T KOG0745|consen 223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDC 259 (564)
T ss_pred eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecc
Confidence 4567899999999999999999999999999986653
No 285
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.0081 Score=60.99 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----CCcceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~ 219 (388)
.|..++|+|++||||||+-|++|-.. |--+|++.+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~ 66 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD 66 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 57889999999999999999999655 344555433
No 286
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.69 E-value=0.0075 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcC
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
|+|.|.+|+|||++++.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998775
No 287
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.062 Score=52.15 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
++...+|+|.+|+||.|++..+++.++...+.+.+++++.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ 53 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE 53 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHH
Confidence 5788999999999999999999999999999998887764
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.65 E-value=0.026 Score=59.12 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
++..|+|+|+.|+||||++..||..| | .-++++|.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999887 3 456788865
No 289
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.027 Score=62.54 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=36.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~ 227 (388)
..-|.|-|+||+|||-+||++|..+.+.|++. -+++-.+.|.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq 748 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ 748 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence 45699999999999999999999999999994 5777666665
No 290
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.58 E-value=0.011 Score=54.75 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999865
No 291
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.56 E-value=0.013 Score=60.33 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC--Ccceec
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST 217 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~ 217 (388)
..+.|+.|.|.|+||+|||.+|-.+|+.|| .||+.+
T Consensus 46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 345689999999999999999999999998 888875
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.56 E-value=0.011 Score=53.64 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=25.1
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999999765
No 293
>PRK05642 DNA replication initiation factor; Validated
Probab=95.53 E-value=0.069 Score=50.85 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=29.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHh-----cCCcceechhHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLE 222 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~-----LG~~fID~D~lIE 222 (388)
..++|.|.+|+|||.+++.++.. ....|++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 57899999999999999998754 3467888888764
No 294
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.52 E-value=0.012 Score=64.97 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 3578999999999999999999999998887643
No 295
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.012 Score=54.23 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468889999999999999999999765
No 296
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.50 E-value=0.065 Score=56.08 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l 220 (388)
+..|+++|++|+||||++..||..| | ..++|+|.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5689999999999999988888774 2 557899954
No 297
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.012 Score=55.29 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 298
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.50 E-value=0.011 Score=55.48 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..|.|+|++||||||+-|++|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34468899999999999999999999865
No 299
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.50 E-value=0.012 Score=54.37 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3368899999999999999999999776
No 300
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.49 E-value=0.012 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999875
No 301
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.48 E-value=0.012 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3367899999999999999999999765
No 302
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.061 Score=57.15 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
+..++|.|++|+||||+|+.||+.|+..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3458999999999999999999999874
No 303
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.46 E-value=0.012 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999999765
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.45 E-value=0.29 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=24.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.+++|+|++|+|||++++.||+..
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999875
No 305
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.44 E-value=0.029 Score=67.52 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=33.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE 222 (388)
.++.|.|+|++|+|||-+||+||...++||+.. .++++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 457899999999999999999999999999874 55554
No 306
>PRK13695 putative NTPase; Provisional
Probab=95.44 E-value=0.013 Score=52.57 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCcc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP 214 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~f 214 (388)
++|+|+|.+|+||||+.+.++..+ |+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 579999999999999999988776 5553
No 307
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.44 E-value=0.014 Score=53.37 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+.+|+|+|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999998764
No 308
>PRK08727 hypothetical protein; Validated
Probab=95.42 E-value=0.16 Score=48.29 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELL 221 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lI 221 (388)
..|+|.|.+|+|||.+++.++..+ |+ .|+..++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 459999999999999999986554 44 567766644
No 309
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.41 E-value=0.046 Score=57.29 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
+..|.|+|+.|+||||++..||..| | .-++++|.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4679999999999999999999877 4 466888875
No 310
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.013 Score=54.01 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999999765
No 311
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.41 E-value=0.1 Score=53.30 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=28.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLE 222 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE 222 (388)
..++|.|++|+|||++++.++..+ + ..|++++++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence 468999999999999999999876 3 34677766544
No 312
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.41 E-value=0.0057 Score=64.96 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=28.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE 222 (388)
..+.+++|+|++|+||||+++.++..+ +..+.+..++
T Consensus 209 ~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le 245 (499)
T TIGR00368 209 AGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIE 245 (499)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEe
Confidence 356899999999999999999999876 3344444444
No 313
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.013 Score=54.84 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468899999999999999999999765
No 314
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.12 Score=52.39 Aligned_cols=135 Identities=15% Similarity=0.186 Sum_probs=78.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCc--------------------hhhhh-----hccCc-
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT--------------------IDSWM-----LAEGS- 238 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~s--------------------I~eif-----~~~Ge- 238 (388)
+-|.|.|++|.|||-+|+++|..-+-.|++. -+++.+-.|.+ |++|= ..++|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs 246 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES 246 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch
Confidence 3499999999999999999999999888764 55665555432 11110 11222
Q ss_pred HHHHHHHHHHHHHHhc---CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-----------ccc--CHHHHH
Q 016486 239 DSVVNGECDVLESLSS---HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-----------DEN--SAKEEA 302 (388)
Q Consensus 239 ~~FRe~E~~vL~~L~~---~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-----------D~~--d~~e~l 302 (388)
++-|++-++.|-++.. ....|+..|+----+++....|+.. .--||+-.|..- +.+ -..+.+
T Consensus 247 easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRF--ekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~ 324 (439)
T KOG0739|consen 247 EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRF--EKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDF 324 (439)
T ss_pred HHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHh--hcceeccCCcHHHhhhhheeccCCCccccchhhH
Confidence 4677888888877752 2345666664310022333333222 346777666543 111 112233
Q ss_pred HHHHHHhHhccccCcEEEEcCC
Q 016486 303 RRHVKDGKLGYSNADVVVKLQG 324 (388)
Q Consensus 303 ~~l~~eR~~~Y~~AD~vV~~d~ 324 (388)
+++ .+.-.-|..+|+.|.+.+
T Consensus 325 ~eL-~~kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 325 KEL-ARKTEGYSGSDISIVVRD 345 (439)
T ss_pred HHH-HhhcCCCCcCceEEEehh
Confidence 333 233467899998877664
No 315
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.39 E-value=0.014 Score=53.69 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 316
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.39 E-value=0.012 Score=54.99 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468899999999999999999999765
No 317
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.38 E-value=0.081 Score=57.74 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=30.2
Q ss_pred eEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHHHH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLETF 224 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE~~ 224 (388)
.+||.|.+|+|||.+++.++..+ | ..|+.+++++.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 49999999999999999999876 2 3688887776544
No 318
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.014 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367899999999999999999999765
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.35 E-value=0.14 Score=54.21 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=28.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST 217 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~ 217 (388)
-+|..|.|+|.+||||||+.+.|+..+ |--++|+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 368899999999999999999999887 4445554
No 320
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.34 E-value=0.013 Score=56.52 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceech
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTK 218 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D 218 (388)
.--+|..++|||++||||||+-|.|...- |--.||++
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 34468899999999999999999886532 45566663
No 321
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.34 E-value=0.013 Score=54.05 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468899999999999999999998765
No 322
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.34 E-value=0.013 Score=54.14 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999999998765
No 323
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.33 E-value=0.015 Score=54.09 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=25.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3368899999999999999999999876
No 324
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.33 E-value=0.014 Score=54.77 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468899999999999999999999765
No 325
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.014 Score=54.47 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=25.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999876
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.077 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
++..|.|+|++|+||||+...||..| | ..++++|.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 35689999999999999888888765 3 335777743
No 327
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.32 E-value=0.015 Score=53.48 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999865
No 328
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.31 E-value=0.014 Score=61.50 Aligned_cols=31 Identities=29% Similarity=0.117 Sum_probs=27.1
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
....+.+|+|.|++|+|||++|+.||..++.
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3446889999999999999999999999863
No 329
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.03 Score=55.24 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=36.5
Q ss_pred hhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcc-eechhHHHHH
Q 016486 172 SWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF 224 (388)
Q Consensus 172 ~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~f-ID~D~lIE~~ 224 (388)
.|-... +..++..|+|=|.+|.||||+|..||.+||..- +.+|.+.|-+
T Consensus 79 lwR~ir----~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl 128 (299)
T COG2074 79 LWRRIR----KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL 128 (299)
T ss_pred HHHHHh----ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence 455544 344566788889999999999999999999764 5667665433
No 330
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.015 Score=53.97 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.++|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468889999999999999999999765
No 331
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.015 Score=52.18 Aligned_cols=29 Identities=17% Similarity=0.050 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999998765
No 332
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.29 E-value=0.022 Score=55.56 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=24.9
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.++|.|++|+||||+++.+++.++..++..
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 455589999999999999999998766543
No 333
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.29 E-value=0.015 Score=53.77 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.28 E-value=0.03 Score=56.28 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+.+++|.|++|+|||++.+.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999876
No 335
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=0.011 Score=64.62 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=28.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
..+..++|.|++|+||||+.+.||+.+++.+++
T Consensus 108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 345679999999999999999999999977654
No 336
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.26 E-value=0.016 Score=52.98 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999765
No 337
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.26 E-value=0.017 Score=64.48 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.++..|+|+|++|+||||+++.+|+.++.+|+..
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4577899999999999999999999999998643
No 338
>PRK08181 transposase; Validated
Probab=95.26 E-value=0.023 Score=55.80 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=32.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF 224 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~ 224 (388)
++.+++|+|++|+|||.++..++..+ | ..|+.+.+++++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 56789999999999999999998654 4 5577777777655
No 339
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.26 E-value=0.015 Score=54.46 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999763
No 340
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.058 Score=58.11 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-------CCcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~l 220 (388)
++..|.|+|+.|+||||+...||..+ ...++++|.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 47899999999999999999998754 2567888874
No 341
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.25 E-value=0.016 Score=53.33 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999876
No 342
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.24 E-value=0.016 Score=53.60 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467889999999999999999999765
No 343
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.23 E-value=0.02 Score=51.86 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
..++-|.|+|++|+||||++..|.++ |+.++.=|.
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~ 46 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDR 46 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence 35788999999999999999988886 788885553
No 344
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.053 Score=55.81 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=46.0
Q ss_pred hccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcC
Q 016486 158 KKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ 227 (388)
Q Consensus 158 ~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~ 227 (388)
...+.-++=|.+.+ .+. --.++-|.|-|+||+|||-+||++|.+.+..||- +-+++.++.|.
T Consensus 165 E~VELPL~~PElF~---~~G-----I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 165 EVVELPLKNPELFE---ELG-----IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred HHhcccccCHHHHH---HcC-----CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 34444466666633 222 2246789999999999999999999999999987 46777777765
No 345
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.21 E-value=0.016 Score=64.47 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.9
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|++|+|||++|+.||+.|+.+|+..|
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 6899999999999999999999998886543
No 346
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.20 E-value=0.023 Score=44.08 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.2
Q ss_pred EEEEecCCCchHHHHHHHHHhc---CCcceech
Q 016486 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK 218 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D 218 (388)
|++.|..|+||||++..||..| |++.+-.|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 7889999999999999999998 67776666
No 347
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.017 Score=54.44 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 348
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.19 E-value=0.016 Score=57.18 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=30.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC----Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~ 219 (388)
.-+|..+-|+|-+||||||+||.|...+. --++++.+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 34688999999999999999999988773 45566555
No 349
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.19 E-value=0.017 Score=53.92 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|.+||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999999765
No 350
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.18 E-value=0.016 Score=53.98 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.++|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 351
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.17 E-value=0.018 Score=52.71 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999876
No 352
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.17 E-value=0.017 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 353
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.17 E-value=0.018 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33468899999999999999999999775
No 354
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.018 Score=51.95 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=24.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998654
No 355
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.16 E-value=0.016 Score=55.79 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.4
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
.++|+|+.|+|||.+|-.||+++|.+.|..|.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 478999999999999999999999999999987
No 356
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.14 E-value=0.018 Score=54.14 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468899999999999999999999664
No 357
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.14 E-value=0.19 Score=47.50 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=55.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-------CCcceechhHHHHHh----cCchh---------------hhhhccCcHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETFA----KQTID---------------SWMLAEGSDS 240 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~lIE~~~----g~sI~---------------eif~~~Ge~~ 240 (388)
..++|.|.+|+|||.+.+.++..+ ...|++.+++..... ...+. ++-.-.|...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 469999999999999999997764 245788777654332 11121 1111112222
Q ss_pred HHHHHHHHHHHHhcCCC-eEEEecCCcccc-cccHHHHHhhcCCcEEEEEcCcc
Q 016486 241 VVNGECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEA 292 (388)
Q Consensus 241 FRe~E~~vL~~L~~~~~-~VVStGGG~~ga-v~r~enr~~L~~g~VVyLd~~~e 292 (388)
..+.=..++..+...+. +|+++....... ...+..+..|..|+++-|..|.+
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 22222344555554444 555554331000 12344455666799999977753
No 358
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.14 E-value=0.14 Score=57.86 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.....+++|+|++|+||||+++.||+++.
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 33457899999999999999999999873
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.14 E-value=0.027 Score=50.36 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=19.4
Q ss_pred eEEEEecCCCchHHHHHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.++|+|++||||||+.+.+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3789999999999999987765
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.14 E-value=0.018 Score=53.83 Aligned_cols=27 Identities=7% Similarity=-0.212 Sum_probs=24.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999999999654
No 361
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.12 E-value=0.018 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|.+||||||+.+.|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468899999999999999999999765
No 362
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.018 Score=53.97 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3367889999999999999999999765
No 363
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.11 E-value=0.15 Score=53.10 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=64.3
Q ss_pred hhHHhhhhhhhc---cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH----HHHhcCchhhhh----
Q 016486 172 SWESLTAGSMQL---LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL----ETFAKQTIDSWM---- 233 (388)
Q Consensus 172 ~W~sl~~~~~~~---l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI----E~~~g~sI~eif---- 233 (388)
.|..+-....+. .+++.|.|+|+.|+||||--..||.++. ..+|.+|.+. |+.- ..++++
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk--~Ya~im~vp~ 263 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK--TYADIMGVPL 263 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH--HHHHHhCCce
Confidence 555555444444 4688999999999999986666766664 7899999983 3321 122221
Q ss_pred -hccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccc
Q 016486 234 -LAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAM 293 (388)
Q Consensus 234 -~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~ 293 (388)
.......|. +++..+... ++|+..-.|. -.........|. . .+-+||-.+.-.
T Consensus 264 ~vv~~~~el~----~ai~~l~~~-d~ILVDTaGr--s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 EVVYSPKELA----EAIEALRDC-DVILVDTAGR--SQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred EEecCHHHHH----HHHHHhhcC-CEEEEeCCCC--CccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 111222332 234455444 4454433332 245555555444 2 468888888653
No 364
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.09 E-value=0.019 Score=52.76 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999999999765
No 365
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.09 E-value=0.017 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
++|.|||..|||||||.+.|-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999988663
No 366
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.018 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+| .+.|+|++||||||+.+.|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 89999999999999999999765
No 367
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.019 Score=54.06 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 368
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.019 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 369
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.06 E-value=0.019 Score=56.40 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=31.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechhHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKELL 221 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~lI 221 (388)
-.+|..+.|+|+.||||||+-|.|+..| |--++|+.++.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 3457899999999999999999999977 45677776553
No 370
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.031 Score=59.39 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----C---CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G---~~fID~D~l 220 (388)
++..|.|+|+.|+||||....||..+ | .-+++.|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 46789999999999999999999766 2 456788875
No 371
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.04 E-value=0.02 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57889999999999999999998764
No 372
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.03 E-value=0.018 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=23.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..+.|.|++||||||+-|++|---
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999543
No 373
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.02 E-value=0.02 Score=54.08 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367889999999999999999999765
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.02 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|..+.|+|++||||||+.+.|+-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346788999999999999999999953
No 375
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.064 Score=55.45 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---------CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------~~fID~D~l 220 (388)
++..|+|+|+.|+||||.+..||..+. ..++++|.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 357899999999999999999998763 457888875
No 376
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.00 E-value=0.02 Score=54.08 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367899999999999999999999765
No 377
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.99 E-value=0.021 Score=54.18 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=24.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999999654
No 378
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.97 E-value=0.021 Score=53.72 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 379
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.96 E-value=0.022 Score=51.29 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34468899999999999999999999765
No 380
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.95 E-value=0.021 Score=54.01 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999999765
No 381
>PRK10867 signal recognition particle protein; Provisional
Probab=94.95 E-value=0.079 Score=55.53 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l 220 (388)
+..|+++|+.|+||||++..||..| | .-++++|.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5689999999999999888888755 3 357899954
No 382
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.022 Score=53.02 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.||-.+
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34467889999999999999999999776
No 383
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.95 E-value=0.021 Score=54.58 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999765
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.94 E-value=0.022 Score=54.94 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=27.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST 217 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~ 217 (388)
-+|..+.|+|++||||||+-..++-.. |..++++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 357889999999999999999888655 3445554
No 385
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.94 E-value=0.024 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|+++|.+|+||||+-+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999888754
No 386
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.94 E-value=0.028 Score=49.10 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+...|+|+|++|+||||+.+.|...
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 3445678999999999999999988754
No 387
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.94 E-value=0.023 Score=52.52 Aligned_cols=27 Identities=11% Similarity=-0.085 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+...|.|+|.+||||||+.+.|...|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 345689999999999999999998874
No 388
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.92 E-value=0.023 Score=53.24 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999754
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.044 Score=57.26 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l 220 (388)
+..|.|+|+.|+||||++..||..|. ..++++|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 46899999999999999999997773 557888865
No 390
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.91 E-value=0.022 Score=53.57 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999875
No 391
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.91 E-value=0.023 Score=51.98 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999865
No 392
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.02 Score=52.93 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=25.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+|..+.|+|++||||||+.+.|+-.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 34678999999999999999999998753
No 393
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.91 E-value=0.024 Score=54.09 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 368899999999999999999999754
No 394
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.031 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=23.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
..++|.|++|+||||+++.+|+.+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999999974
No 395
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=94.90 E-value=0.016 Score=57.91 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC---cceechhHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY---TPLSTKELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~---~fID~D~lIE~~~g 226 (388)
+.+.|++-|.-|+|||++||.||++||+ |-+++|.+....+|
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg 114 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG 114 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence 3578999999999999999999999995 55578877655554
No 396
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.90 E-value=0.022 Score=53.83 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=24.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.++|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999644
No 397
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.89 E-value=0.022 Score=54.02 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 398
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.89 E-value=0.024 Score=50.82 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999999998765
No 399
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.88 E-value=0.023 Score=53.23 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|.+||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999765
No 400
>PRK10908 cell division protein FtsE; Provisional
Probab=94.88 E-value=0.023 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 401
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.88 E-value=0.16 Score=53.13 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=30.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-------CCcceechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~lIE~~ 224 (388)
..++|.|++|+|||++++.++..+ ...|++.++++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 469999999999999999999875 34577777765443
No 402
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.87 E-value=0.024 Score=52.01 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999998765
No 403
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.021 Score=54.06 Aligned_cols=27 Identities=15% Similarity=-0.023 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999999999765
No 404
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.87 E-value=0.022 Score=53.14 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=25.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
...+|..+.|+|++||||||+.+.|+..+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 344678999999999999999999997653
No 405
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.87 E-value=0.023 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
-+|..+.|+|++||||||+.+.|+-.+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3688999999999999999999997653
No 406
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.86 E-value=0.024 Score=51.38 Aligned_cols=28 Identities=14% Similarity=-0.024 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367889999999999999999999876
No 407
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.86 E-value=0.025 Score=50.58 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=24.8
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999998654
No 408
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.024 Score=53.43 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468899999999999999999999765
No 409
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.83 E-value=0.024 Score=53.78 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=25.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999876
No 410
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.83 E-value=0.026 Score=50.69 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999999999765
No 411
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.82 E-value=0.024 Score=53.60 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999999664
No 412
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.82 E-value=0.023 Score=62.72 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
..+...|+|++|.||||+|..+|+.-||.+++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 346788999999999999999999999999996
No 413
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.81 E-value=0.025 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999765
No 414
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.025 Score=52.52 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|.+||||||+.+.|+..+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999999765
No 415
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.48 Score=54.04 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
..++|.|++|+||||++++||+.|++.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 346899999999999999999999874
No 416
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.024 Score=53.69 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999999764
No 417
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.80 E-value=0.033 Score=52.99 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
-....|.|.|+.|+||||+|+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 34578999999999999999999987
No 418
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.025 Score=52.03 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+..+
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999999765
No 419
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.79 E-value=0.025 Score=53.98 Aligned_cols=28 Identities=14% Similarity=-0.008 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.||-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3368899999999999999999999754
No 420
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.78 E-value=0.025 Score=53.04 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998765
No 421
>PRK12377 putative replication protein; Provisional
Probab=94.77 E-value=0.11 Score=50.56 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETF 224 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lIE~~ 224 (388)
..+++|.|.+|+|||.++..+|..+ |+ .|+...+++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3689999999999999999999988 33 466666666543
No 422
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.026 Score=52.69 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999776
No 423
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.76 E-value=0.015 Score=60.20 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=50.2
Q ss_pred EEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCc
Q 016486 119 RVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEV 198 (388)
Q Consensus 119 ~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSG 198 (388)
+.+.+-..+-+|+-.+|-++.+|.+ .|| ++.|+.-+---++ |..-+ ..-+-.+++|-|++|+|
T Consensus 112 ~~l~~~e~R~~~qh~PLaermRPkt----L~d------yvGQ~hlv~q~gl------lrs~i-eq~~ipSmIlWGppG~G 174 (554)
T KOG2028|consen 112 RALAAEEIRQMLQHKPLAERMRPKT----LDD------YVGQSHLVGQDGL------LRSLI-EQNRIPSMILWGPPGTG 174 (554)
T ss_pred chhhhHHHHHHhccCChhhhcCcch----HHH------hcchhhhcCcchH------HHHHH-HcCCCCceEEecCCCCc
Confidence 3445555667788888999999987 333 2222210000011 11111 11123579999999999
Q ss_pred hHHHHHHHHHhcC---Ccceec
Q 016486 199 NEKVALELAVGLG---YTPLST 217 (388)
Q Consensus 199 KSTVGr~LAk~LG---~~fID~ 217 (388)
|||+|+.|+..-. |.||++
T Consensus 175 KTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 175 KTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hHHHHHHHHhhcCCCceEEEEE
Confidence 9999999998764 668876
No 424
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.76 E-value=0.024 Score=48.12 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=25.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l 220 (388)
+.|+|.+|+||||+++.++..+. ..|++.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 68999999999999999988873 445555443
No 425
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.76 E-value=0.026 Score=52.10 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999875
No 426
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.75 E-value=0.026 Score=53.81 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=24.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999876
No 427
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.74 E-value=0.026 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999875
No 428
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.026 Score=53.53 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999999999875
No 429
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.74 E-value=0.027 Score=52.09 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33468899999999999999999999765
No 430
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.74 E-value=0.028 Score=50.86 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998765
No 431
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.028 Score=50.37 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=25.6
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34468899999999999999999999876
No 432
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.026 Score=54.20 Aligned_cols=28 Identities=14% Similarity=-0.018 Sum_probs=24.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999999999753
No 433
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.74 E-value=0.027 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999999775
No 434
>PRK04296 thymidine kinase; Provisional
Probab=94.72 E-value=0.025 Score=52.13 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
|..++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999988887
No 435
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.035 Score=59.26 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
...++|.|++|+||||+|+++|+.|++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3579999999999999999999999864
No 436
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.72 E-value=0.026 Score=54.45 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999765
No 437
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.72 E-value=0.029 Score=54.79 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=22.5
Q ss_pred eEEEEecCCCchHHHHHHHHHhcC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+++|.|++|+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999884
No 438
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.71 E-value=0.025 Score=58.51 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=31.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~ 219 (388)
.-....|+|+|+-.|||||+...||.++. +.+||.|-
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 33457899999999999999999999985 67788874
No 439
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.028 Score=53.35 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|.+||||||+.+.|+-.+
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999999999999764
No 440
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.70 E-value=0.028 Score=52.29 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33468899999999999999999999775
No 441
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.69 E-value=0.029 Score=51.63 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=22.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.-+|..+.|+|++||||||+-+.+..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34678999999999999999998853
No 442
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.025 Score=54.36 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467889999999999999999999765
No 443
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.027 Score=53.27 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=23.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.-+|..+.|+|++||||||+.+.|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 346889999999999999999999864
No 444
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.69 E-value=0.027 Score=54.36 Aligned_cols=28 Identities=21% Similarity=0.045 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999765
No 445
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.027 Score=53.32 Aligned_cols=28 Identities=14% Similarity=-0.050 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999998753
No 446
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.68 E-value=0.029 Score=51.50 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.++-.+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 34468899999999999999999998875
No 447
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.68 E-value=0.028 Score=52.67 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468899999999999999999999766
No 448
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.67 E-value=0.025 Score=56.57 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.6
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|.+||||||+++.|+..+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34468899999999999999999999876
No 449
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.66 E-value=0.033 Score=61.84 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
..+++|.|++|+||||+++.+|+.++..|+..+..
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 35799999999999999999999999888776654
No 450
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.65 E-value=0.029 Score=52.13 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|.+||||||+.+.|+..+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999999876
No 451
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.65 E-value=0.029 Score=51.66 Aligned_cols=29 Identities=17% Similarity=0.035 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999999875
No 452
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.65 E-value=0.028 Score=53.59 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999999999876
No 453
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.65 E-value=0.023 Score=59.63 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=25.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
--+|..|.|+|++||||||+.+.|+..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999998776
No 454
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.65 E-value=0.029 Score=53.07 Aligned_cols=28 Identities=14% Similarity=-0.060 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999999999999754
No 455
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.037 Score=58.43 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=23.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
..++|.|++|+||||+|+.+|+.++.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999999875
No 456
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.64 E-value=0.029 Score=53.31 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999765
No 457
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.63 E-value=0.03 Score=63.08 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=25.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+.+++|+|++|+|||++++.||+.+
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999999998
No 458
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.63 E-value=0.029 Score=53.08 Aligned_cols=28 Identities=14% Similarity=-0.092 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|.+||||||+.+.|+-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3467889999999999999999999754
No 459
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.62 E-value=0.028 Score=54.74 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999776
No 460
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.098 Score=57.96 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=39.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~ 227 (388)
+......|.|-|+||||||-++..+|...++.||.. -+++.+..|.
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence 334467899999999999999999999999999994 6778877776
No 461
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.61 E-value=0.03 Score=51.88 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999999765
No 462
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.60 E-value=0.027 Score=54.25 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999999999765
No 463
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.59 E-value=0.029 Score=52.60 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999754
No 464
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.59 E-value=0.031 Score=51.72 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.0
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33468899999999999999999999764
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.59 E-value=0.028 Score=52.05 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.4
Q ss_pred eEEEEecCCCchHHHHHHHHHhcC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.|+|+|++||||||+.+.|+..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999998888774
No 466
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.59 E-value=0.03 Score=51.76 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999999765
No 467
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.57 E-value=0.047 Score=52.30 Aligned_cols=38 Identities=11% Similarity=-0.047 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+..++|.|.+|+||||+++.|+. ...+++.|.-.....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~ 49 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLI 49 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhcc
Confidence 46699999999999999999973 356677766443333
No 468
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.57 E-value=0.032 Score=51.32 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|.+||||||+.+.|+-.+
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468899999999999999999998764
No 469
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.03 Score=54.07 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468889999999999999999999754
No 470
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.03 Score=53.13 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=24.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3467889999999999999999999543
No 471
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.55 E-value=0.028 Score=52.94 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 3468899999999999999999999873
No 472
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.55 E-value=0.031 Score=52.77 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999999999765
No 473
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.54 E-value=0.026 Score=61.29 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+++.++|+||+|+||||+++.||+.|.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 567899999999999999999999986
No 474
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.54 E-value=0.028 Score=53.13 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=23.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|..+.|+|.+||||||+.+.|+-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 346789999999999999999999974
No 475
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.54 E-value=0.032 Score=53.76 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3368899999999999999999999865
No 476
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.53 E-value=0.045 Score=54.30 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+.+++|.|++|+|||++++.+++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999865
No 477
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.066 Score=57.71 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=43.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceec-hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST-KELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~-D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
++-|.|+|+||.|||-+||++|-.-|.||+-+ ...++++ |--.|..+.|++ .....+.-+|||
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm--------~VGvGArRVRdL----F~aAk~~APcII 400 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM--------FVGVGARRVRDL----FAAAKARAPCII 400 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh--------hhcccHHHHHHH----HHHHHhcCCeEE
Confidence 36799999999999999999999999999874 3334333 333366666643 323333345665
No 478
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.52 E-value=0.031 Score=61.81 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=28.8
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCccee--chhHHH
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLE 222 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE 222 (388)
+++|+|++|+|||++|+.||+.++.+++- +.++.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 57899999999999999999999976654 445443
No 479
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.032 Score=52.12 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468899999999999999999999765
No 480
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.51 E-value=0.033 Score=51.07 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=26.6
Q ss_pred hhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+...++++.++|+|.+|+||||+...|....
T Consensus 29 l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 29 LKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467778999999999999999999887765
No 481
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.51 E-value=0.031 Score=53.99 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 482
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.51 E-value=0.032 Score=52.82 Aligned_cols=29 Identities=14% Similarity=-0.041 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|.+||||||+.+.||-.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468899999999999999999999754
No 483
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.032 Score=53.31 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=25.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|.+||||||+.+.|+-.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33468899999999999999999999764
No 484
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.032 Score=52.77 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=24.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3368889999999999999999999643
No 485
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.032 Score=52.84 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=23.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.-+|..+.|+|++||||||+.+.|+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 346889999999999999999999864
No 486
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.49 E-value=0.032 Score=52.44 Aligned_cols=28 Identities=7% Similarity=0.016 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467889999999999999999999765
No 487
>PLN03025 replication factor C subunit; Provisional
Probab=94.49 E-value=0.033 Score=55.13 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+++|.|++|+||||+++.+|+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997
No 488
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.032 Score=53.84 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468899999999999999999999876
No 489
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.031 Score=54.03 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999765
No 490
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.47 E-value=0.033 Score=53.12 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999999765
No 491
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.032 Score=53.81 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3368899999999999999999999875
No 492
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.033 Score=53.60 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999999765
No 493
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.036 Score=56.85 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=24.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
..++|.|++|+||||+|+.+|+.|.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 458899999999999999999999873
No 494
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.44 E-value=0.039 Score=51.82 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=24.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+.+....|+|+.||||||+.++|+-.|+
T Consensus 20 ~~~~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 20 PFSPKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred cCCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34577889999999999999999985543
No 495
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.44 E-value=0.034 Score=53.40 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999764
No 496
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.44 E-value=0.033 Score=53.76 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=25.0
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+-.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999999654
No 497
>PLN02796 D-glycerate 3-kinase
Probab=94.44 E-value=0.035 Score=56.69 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI 221 (388)
..|.|+|.+||||||+++.|+..+. ...|..|++.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4589999999999999999999985 3446666664
No 498
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.43 E-value=0.034 Score=48.85 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|.+||||||+.+.|+..+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467889999999999999999998765
No 499
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.16 Score=49.26 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=47.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHH--HHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESLSSH 255 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FR--e~E~~vL~~L~~~ 255 (388)
.-++.+++|.|.+|+|||.++.+++..+- ..|+.+-+++.+... .|. ..|.++++.+...
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~-------------~~~~~~~~~~l~~~l~~~ 168 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA-------------AFDEGRLEEKLLRELKKV 168 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-------------HHhcCchHHHHHHHhhcC
Confidence 33788999999999999999999988873 345566666554331 122 2455566666665
Q ss_pred CCeEEEecCC
Q 016486 256 VRAVVATLGG 265 (388)
Q Consensus 256 ~~~VVStGGG 265 (388)
+=.||---|-
T Consensus 169 dlLIiDDlG~ 178 (254)
T COG1484 169 DLLIIDDIGY 178 (254)
T ss_pred CEEEEecccC
Confidence 5567766654
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.03 Score=59.55 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=23.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
..++|.|++|+||||+++.+|+.+.+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45799999999999999999999964
Done!