Query 016486
Match_columns 388
No_of_seqs 266 out of 1419
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vaa_A Shikimate kinase, SK; s 99.9 1.4E-26 4.8E-31 208.4 16.5 155 185-345 24-197 (199)
2 3nwj_A ATSK2; P loop, shikimat 99.9 8.3E-27 2.8E-31 221.5 14.5 164 181-350 43-243 (250)
3 3trf_A Shikimate kinase, SK; a 99.9 7.4E-27 2.5E-31 205.7 12.3 155 186-346 5-177 (185)
4 2iyv_A Shikimate kinase, SK; t 99.9 4.6E-23 1.6E-27 181.6 14.0 150 187-342 3-167 (184)
5 1zuh_A Shikimate kinase; alpha 99.9 4.9E-23 1.7E-27 179.3 12.0 144 187-341 8-167 (168)
6 1via_A Shikimate kinase; struc 99.9 1.5E-22 5.1E-27 177.7 14.6 146 187-342 5-165 (175)
7 1kag_A SKI, shikimate kinase I 99.9 1.3E-22 4.4E-27 176.4 12.2 151 186-342 4-171 (173)
8 2pt5_A Shikimate kinase, SK; a 99.9 7E-22 2.4E-26 171.0 12.8 149 187-342 1-162 (168)
9 1e6c_A Shikimate kinase; phosp 99.9 9.3E-22 3.2E-26 170.6 11.6 149 187-342 3-169 (173)
10 3fdi_A Uncharacterized protein 99.8 4.8E-19 1.6E-23 162.0 9.1 149 184-344 4-199 (201)
11 3hdt_A Putative kinase; struct 99.7 2.5E-18 8.5E-23 160.7 9.1 147 186-343 14-218 (223)
12 1qhx_A CPT, protein (chloramph 99.7 9.6E-17 3.3E-21 139.8 11.7 145 185-341 2-176 (178)
13 3lw7_A Adenylate kinase relate 99.7 1.3E-16 4.5E-21 135.9 11.9 146 187-345 2-178 (179)
14 1knq_A Gluconate kinase; ALFA/ 99.7 2.7E-16 9.1E-21 137.2 13.8 146 184-342 6-172 (175)
15 4eun_A Thermoresistant glucoki 99.6 1.2E-15 4.1E-20 137.0 13.4 150 182-344 25-194 (200)
16 3iij_A Coilin-interacting nucl 99.6 1.7E-17 5.8E-22 145.7 0.7 143 183-346 8-176 (180)
17 2c95_A Adenylate kinase 1; tra 99.6 1.5E-15 5E-20 133.7 12.1 151 185-345 8-195 (196)
18 1y63_A LMAJ004144AAA protein; 99.6 4.1E-17 1.4E-21 145.1 1.4 146 182-345 6-179 (184)
19 1qf9_A UMP/CMP kinase, protein 99.6 3.1E-15 1.1E-19 130.5 11.2 148 186-343 6-191 (194)
20 3kb2_A SPBC2 prophage-derived 99.6 1E-14 3.5E-19 125.3 14.0 141 187-346 2-169 (173)
21 3t61_A Gluconokinase; PSI-biol 99.6 6.2E-15 2.1E-19 131.8 11.7 146 186-345 18-181 (202)
22 3cm0_A Adenylate kinase; ATP-b 99.6 3.1E-15 1.1E-19 131.1 9.6 145 185-341 3-184 (186)
23 1tev_A UMP-CMP kinase; ploop, 99.6 7.7E-15 2.6E-19 128.2 10.8 149 185-343 2-194 (196)
24 1zak_A Adenylate kinase; ATP:A 99.6 1.7E-14 5.7E-19 131.1 12.9 151 185-346 4-213 (222)
25 2vli_A Antibiotic resistance p 99.6 2E-15 6.8E-20 131.7 6.4 150 185-346 4-174 (183)
26 2bwj_A Adenylate kinase 5; pho 99.6 1.6E-14 5.4E-19 127.4 12.1 150 185-344 11-197 (199)
27 3be4_A Adenylate kinase; malar 99.6 8.4E-15 2.9E-19 133.3 10.6 106 185-293 4-124 (217)
28 2h92_A Cytidylate kinase; ross 99.6 7.1E-16 2.4E-20 139.1 2.5 146 185-342 2-216 (219)
29 2rhm_A Putative kinase; P-loop 99.6 2.5E-14 8.4E-19 125.5 11.9 151 185-346 4-187 (193)
30 1aky_A Adenylate kinase; ATP:A 99.5 1.2E-14 4.1E-19 131.9 8.7 150 185-342 3-218 (220)
31 2cdn_A Adenylate kinase; phosp 99.5 5.5E-14 1.9E-18 125.6 11.8 155 181-342 15-200 (201)
32 1zd8_A GTP:AMP phosphotransfer 99.5 4.4E-14 1.5E-18 129.0 9.8 105 185-293 6-120 (227)
33 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 5.5E-14 1.9E-18 132.1 10.5 142 186-342 4-172 (260)
34 1vht_A Dephospho-COA kinase; s 99.5 5.6E-14 1.9E-18 127.1 10.0 166 185-364 3-212 (218)
35 1jjv_A Dephospho-COA kinase; P 99.5 1.1E-13 3.6E-18 124.0 11.5 147 187-345 3-198 (206)
36 1kht_A Adenylate kinase; phosp 99.5 4.2E-13 1.5E-17 117.0 14.4 150 185-341 2-191 (192)
37 2grj_A Dephospho-COA kinase; T 99.5 1.5E-13 5E-18 125.3 11.3 142 186-344 12-187 (192)
38 3cr8_A Sulfate adenylyltranfer 99.5 8.1E-14 2.8E-18 146.0 10.7 153 184-344 367-540 (552)
39 3ake_A Cytidylate kinase; CMP 99.5 8.5E-14 2.9E-18 123.5 8.9 139 188-342 4-207 (208)
40 1q3t_A Cytidylate kinase; nucl 99.5 8.5E-15 2.9E-19 134.9 1.9 147 184-343 14-234 (236)
41 2if2_A Dephospho-COA kinase; a 99.5 2.7E-14 9.4E-19 127.3 4.8 148 187-345 2-193 (204)
42 1ukz_A Uridylate kinase; trans 99.4 1.1E-12 3.8E-17 116.8 14.1 155 185-344 14-202 (203)
43 1uf9_A TT1252 protein; P-loop, 99.4 6.4E-14 2.2E-18 123.8 5.4 148 185-345 7-195 (203)
44 1ak2_A Adenylate kinase isoenz 99.4 9.4E-13 3.2E-17 121.0 12.6 106 185-293 15-135 (233)
45 2pbr_A DTMP kinase, thymidylat 99.4 5.5E-13 1.9E-17 116.6 10.3 150 187-345 1-193 (195)
46 1m7g_A Adenylylsulfate kinase; 99.4 2.8E-13 9.7E-18 122.5 8.4 151 182-343 21-202 (211)
47 1x6v_B Bifunctional 3'-phospho 99.4 6E-13 2.1E-17 141.4 11.8 151 184-343 50-222 (630)
48 2v54_A DTMP kinase, thymidylat 99.4 4.7E-13 1.6E-17 118.6 8.2 154 185-347 3-194 (204)
49 4e22_A Cytidylate kinase; P-lo 99.4 3.8E-12 1.3E-16 119.2 13.4 39 185-223 26-64 (252)
50 2pez_A Bifunctional 3'-phospho 99.4 2.8E-12 9.6E-17 112.5 11.4 146 185-343 4-175 (179)
51 2xb4_A Adenylate kinase; ATP-b 99.4 2.7E-12 9.3E-17 117.6 11.3 101 187-293 1-118 (223)
52 3uie_A Adenylyl-sulfate kinase 99.4 3.8E-12 1.3E-16 114.1 11.7 146 184-344 23-195 (200)
53 2yvu_A Probable adenylyl-sulfa 99.4 4.4E-13 1.5E-17 118.3 5.4 153 184-345 11-185 (186)
54 1nks_A Adenylate kinase; therm 99.3 6.4E-12 2.2E-16 109.4 11.6 148 187-341 2-193 (194)
55 2jaq_A Deoxyguanosine kinase; 99.3 3.6E-12 1.2E-16 112.2 10.1 146 187-345 1-202 (205)
56 3fb4_A Adenylate kinase; psych 99.3 8.4E-12 2.9E-16 112.1 12.6 101 187-293 1-119 (216)
57 3dl0_A Adenylate kinase; phosp 99.3 1.2E-11 4.1E-16 111.4 13.3 38 187-224 1-38 (216)
58 1uj2_A Uridine-cytidine kinase 99.3 6.8E-13 2.3E-17 123.5 5.2 150 185-345 21-235 (252)
59 1ly1_A Polynucleotide kinase; 99.3 4E-12 1.4E-16 109.8 9.4 102 187-293 3-118 (181)
60 3a8t_A Adenylate isopentenyltr 99.3 1.6E-12 5.6E-17 129.0 7.3 106 185-293 39-186 (339)
61 1e4v_A Adenylate kinase; trans 99.3 1.8E-11 6.2E-16 110.6 12.0 101 187-293 1-115 (214)
62 2f6r_A COA synthase, bifunctio 99.3 3.3E-11 1.1E-15 114.9 14.1 150 186-347 75-272 (281)
63 1cke_A CK, MSSA, protein (cyti 99.3 4E-11 1.4E-15 108.0 13.6 39 186-224 5-43 (227)
64 1nn5_A Similar to deoxythymidy 99.3 1.4E-11 4.9E-16 109.6 10.0 157 184-347 7-204 (215)
65 3umf_A Adenylate kinase; rossm 99.3 6.9E-11 2.3E-15 110.1 14.0 153 184-344 27-214 (217)
66 2qor_A Guanylate kinase; phosp 99.2 1.5E-11 5.3E-16 110.5 9.0 151 184-345 10-198 (204)
67 4i1u_A Dephospho-COA kinase; s 99.2 1.1E-10 3.7E-15 108.6 14.1 148 187-345 10-203 (210)
68 2wwf_A Thymidilate kinase, put 99.2 1.6E-11 5.6E-16 109.3 7.9 35 184-218 8-42 (212)
69 2z0h_A DTMP kinase, thymidylat 99.2 3.3E-11 1.1E-15 105.9 9.6 152 188-346 2-194 (197)
70 2axn_A 6-phosphofructo-2-kinas 99.2 3.7E-11 1.3E-15 124.6 9.8 103 186-291 35-155 (520)
71 1m8p_A Sulfate adenylyltransfe 99.2 2.6E-11 9E-16 127.3 8.4 150 185-343 395-566 (573)
72 3tlx_A Adenylate kinase 2; str 99.2 1.4E-10 4.8E-15 108.0 12.4 41 185-225 28-68 (243)
73 2plr_A DTMP kinase, probable t 99.2 3.2E-10 1.1E-14 100.3 14.0 34 184-217 2-37 (213)
74 3sr0_A Adenylate kinase; phosp 99.1 2.7E-10 9.2E-15 104.9 12.3 149 187-343 1-204 (206)
75 2p5t_B PEZT; postsegregational 99.1 1.1E-10 3.7E-15 109.0 9.4 114 173-292 19-148 (253)
76 2bdt_A BH3686; alpha-beta prot 99.1 9.7E-11 3.3E-15 103.3 8.4 147 186-338 2-168 (189)
77 1zp6_A Hypothetical protein AT 99.1 9.7E-11 3.3E-15 102.8 8.2 151 183-343 6-175 (191)
78 3r20_A Cytidylate kinase; stru 99.1 7.6E-10 2.6E-14 104.3 12.9 147 185-344 8-228 (233)
79 2gks_A Bifunctional SAT/APS ki 99.1 1.2E-10 4.1E-15 121.7 8.0 164 171-343 356-540 (546)
80 1g8f_A Sulfate adenylyltransfe 99.1 2.1E-10 7.1E-15 119.3 8.8 119 171-343 379-505 (511)
81 2ze6_A Isopentenyl transferase 99.1 2.7E-10 9.3E-15 106.9 8.6 99 187-293 2-130 (253)
82 2qt1_A Nicotinamide riboside k 99.0 8.1E-10 2.8E-14 98.9 10.0 151 185-343 20-205 (207)
83 1gvn_B Zeta; postsegregational 99.0 2.2E-09 7.6E-14 102.8 12.6 111 181-293 28-150 (287)
84 2bbw_A Adenylate kinase 4, AK4 99.0 2.4E-09 8E-14 98.9 12.1 39 185-223 26-64 (246)
85 1bif_A 6-phosphofructo-2-kinas 99.0 7.2E-11 2.5E-15 120.1 2.1 67 185-251 38-110 (469)
86 3crm_A TRNA delta(2)-isopenten 99.0 2.4E-10 8.1E-15 112.7 5.3 78 187-265 6-103 (323)
87 3gmt_A Adenylate kinase; ssgci 99.0 1.6E-09 5.5E-14 102.1 10.2 103 185-293 7-123 (230)
88 4eaq_A DTMP kinase, thymidylat 99.0 4.6E-09 1.6E-13 97.4 13.0 156 184-346 24-227 (229)
89 1ltq_A Polynucleotide kinase; 98.9 1.6E-09 5.5E-14 102.1 8.8 102 187-293 3-118 (301)
90 3zvl_A Bifunctional polynucleo 98.9 3E-09 1E-13 107.0 8.6 89 185-293 257-349 (416)
91 2ga8_A Hypothetical 39.9 kDa p 98.8 1.6E-10 5.5E-15 115.5 -2.1 65 187-252 25-109 (359)
92 4edh_A DTMP kinase, thymidylat 98.7 7.3E-08 2.5E-12 88.9 12.5 157 184-347 4-210 (213)
93 3v9p_A DTMP kinase, thymidylat 98.7 1.1E-07 3.6E-12 89.1 12.3 28 184-211 23-50 (227)
94 3asz_A Uridine kinase; cytidin 98.7 1.1E-07 3.7E-12 84.9 11.4 38 185-222 5-44 (211)
95 3d3q_A TRNA delta(2)-isopenten 98.7 2.1E-08 7.3E-13 99.4 7.1 99 187-292 8-126 (340)
96 1kgd_A CASK, peripheral plasma 98.7 7.9E-08 2.7E-12 84.9 9.5 27 184-210 3-29 (180)
97 4hlc_A DTMP kinase, thymidylat 98.6 2.4E-07 8.4E-12 84.8 11.9 31 186-216 2-34 (205)
98 3tau_A Guanylate kinase, GMP k 98.6 1.9E-07 6.5E-12 84.4 11.0 27 185-211 7-33 (208)
99 1p5z_B DCK, deoxycytidine kina 98.6 2.4E-07 8.2E-12 86.3 11.0 33 184-216 22-55 (263)
100 4tmk_A Protein (thymidylate ki 98.6 6E-07 2E-11 82.9 13.0 28 184-211 1-28 (213)
101 3ld9_A DTMP kinase, thymidylat 98.5 1.3E-07 4.5E-12 88.3 7.9 30 183-212 18-47 (223)
102 3lv8_A DTMP kinase, thymidylat 98.5 1.5E-06 5.2E-11 81.6 15.0 30 182-211 23-52 (236)
103 3hjn_A DTMP kinase, thymidylat 98.5 4E-07 1.4E-11 82.7 10.6 31 187-217 1-34 (197)
104 3tmk_A Thymidylate kinase; pho 98.5 1.1E-06 3.7E-11 81.6 11.6 28 185-212 4-31 (216)
105 2j41_A Guanylate kinase; GMP, 98.4 8E-07 2.7E-11 78.3 9.7 27 184-210 4-30 (207)
106 3tr0_A Guanylate kinase, GMP k 98.4 7.9E-07 2.7E-11 78.4 9.6 27 185-211 6-32 (205)
107 3ney_A 55 kDa erythrocyte memb 98.4 9.1E-07 3.1E-11 81.3 9.7 31 181-211 14-44 (197)
108 2vp4_A Deoxynucleoside kinase; 98.4 4.1E-07 1.4E-11 83.4 6.4 27 184-210 18-44 (230)
109 1x5m_A Calcyclin-binding prote 98.3 3.1E-07 1.1E-11 78.5 3.6 93 79-171 21-113 (127)
110 1dek_A Deoxynucleoside monopho 98.3 1.6E-06 5.4E-11 82.0 8.0 34 187-220 2-35 (241)
111 2jeo_A Uridine-cytidine kinase 98.2 4.5E-06 1.5E-10 77.0 10.4 36 185-220 24-69 (245)
112 3exa_A TRNA delta(2)-isopenten 98.2 2.3E-06 8E-11 84.4 8.3 81 185-265 2-101 (322)
113 3a00_A Guanylate kinase, GMP k 98.2 1.7E-06 5.9E-11 76.4 6.5 26 186-211 1-26 (186)
114 3lnc_A Guanylate kinase, GMP k 98.1 1.5E-06 5.1E-11 79.1 4.2 29 182-210 23-52 (231)
115 2ocp_A DGK, deoxyguanosine kin 98.1 6.9E-05 2.4E-09 68.6 14.4 30 185-214 1-31 (241)
116 3c8u_A Fructokinase; YP_612366 98.0 3.5E-06 1.2E-10 75.8 5.2 36 185-220 21-61 (208)
117 3foz_A TRNA delta(2)-isopenten 98.0 1.1E-05 3.7E-10 79.5 7.7 80 186-265 10-108 (316)
118 1rz3_A Hypothetical protein rb 98.0 1.2E-05 3.9E-10 72.1 6.9 37 185-221 21-62 (201)
119 3eph_A TRNA isopentenyltransfe 97.9 1.2E-05 4.1E-10 81.6 6.4 79 187-265 3-100 (409)
120 1wfi_A Nuclear distribution ge 97.8 9.7E-06 3.3E-10 69.5 3.4 89 78-170 7-96 (131)
121 1wgv_A KIAA1068 protein; CS do 97.8 9.4E-06 3.2E-10 69.0 3.0 89 79-170 20-109 (124)
122 1ex7_A Guanylate kinase; subst 97.8 0.00011 3.8E-09 66.6 9.8 24 187-210 2-25 (186)
123 3ch4_B Pmkase, phosphomevalona 97.7 8E-05 2.7E-09 68.9 8.9 129 185-325 10-175 (202)
124 1lvg_A Guanylate kinase, GMP k 97.7 0.00017 5.7E-09 64.7 9.7 26 185-210 3-28 (198)
125 3qor_A Nuclear migration prote 97.7 1.4E-05 4.6E-10 68.0 2.4 89 78-170 16-105 (121)
126 2rh0_A NUDC domain-containing 97.6 1.3E-05 4.4E-10 71.3 1.5 88 75-169 10-100 (157)
127 1s96_A Guanylate kinase, GMP k 97.6 0.00034 1.1E-08 64.5 10.5 28 184-211 14-41 (219)
128 1a7j_A Phosphoribulokinase; tr 97.5 2.6E-05 8.8E-10 74.8 1.6 37 185-221 4-45 (290)
129 1lv7_A FTSH; alpha/beta domain 97.5 0.0002 7E-09 65.7 7.2 33 186-218 45-77 (257)
130 1g41_A Heat shock protein HSLU 97.4 7.6E-05 2.6E-09 76.4 4.2 50 184-233 48-100 (444)
131 1z6g_A Guanylate kinase; struc 97.4 0.0008 2.8E-08 61.1 9.7 28 183-210 20-47 (218)
132 3ec2_A DNA replication protein 97.3 0.00034 1.2E-08 60.7 6.8 40 185-224 37-82 (180)
133 3t15_A Ribulose bisphosphate c 97.3 0.00024 8.2E-09 67.6 6.3 33 186-218 36-68 (293)
134 2xcm_C SGT1-like protein, cyto 97.2 0.00012 4.2E-09 58.0 2.6 85 80-169 4-88 (92)
135 3hws_A ATP-dependent CLP prote 97.2 0.00021 7.2E-09 69.4 4.4 34 185-218 50-83 (363)
136 3cf0_A Transitional endoplasmi 97.2 0.00039 1.4E-08 66.0 5.7 42 185-226 48-91 (301)
137 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00028 9.7E-09 64.1 4.3 33 185-217 38-70 (262)
138 1rl1_A Suppressor of G2 allele 97.1 0.00021 7.1E-09 59.2 3.1 87 79-170 10-96 (114)
139 2o30_A Nuclear movement protei 97.1 5.2E-05 1.8E-09 65.0 -0.7 85 78-170 4-88 (131)
140 1um8_A ATP-dependent CLP prote 97.1 0.00029 1E-08 68.6 4.4 34 185-218 71-104 (376)
141 3h4m_A Proteasome-activating n 97.1 0.00036 1.2E-08 64.6 4.2 33 185-217 50-82 (285)
142 3b9p_A CG5977-PA, isoform A; A 97.0 0.00038 1.3E-08 65.0 4.2 33 185-217 53-85 (297)
143 1ofh_A ATP-dependent HSL prote 97.0 0.00047 1.6E-08 63.9 4.2 33 185-217 49-81 (310)
144 1sq5_A Pantothenate kinase; P- 97.0 0.00044 1.5E-08 66.3 3.9 37 184-220 78-121 (308)
145 1jbk_A CLPB protein; beta barr 97.0 0.00056 1.9E-08 57.6 4.1 26 185-210 42-67 (195)
146 1d2n_A N-ethylmaleimide-sensit 96.9 0.00047 1.6E-08 63.9 3.5 33 185-217 63-95 (272)
147 4gp7_A Metallophosphoesterase; 96.9 0.00082 2.8E-08 58.6 4.8 36 184-221 7-42 (171)
148 2p65_A Hypothetical protein PF 96.9 0.00048 1.6E-08 58.3 3.2 26 185-210 42-67 (187)
149 1gtv_A TMK, thymidylate kinase 96.9 0.00029 1E-08 62.2 1.9 25 187-211 1-25 (214)
150 4b4t_K 26S protease regulatory 96.9 0.00057 1.9E-08 69.6 4.1 34 185-218 205-238 (428)
151 3n70_A Transport activator; si 96.8 0.00072 2.5E-08 57.3 3.8 31 185-215 23-56 (145)
152 4b4t_M 26S protease regulatory 96.8 0.00066 2.2E-08 69.3 4.1 34 185-218 214-247 (434)
153 1ixz_A ATP-dependent metallopr 96.8 0.00082 2.8E-08 61.5 4.3 32 187-218 50-81 (254)
154 4b4t_L 26S protease subunit RP 96.8 0.00068 2.3E-08 69.2 4.1 34 185-218 214-247 (437)
155 3eie_A Vacuolar protein sortin 96.8 0.00073 2.5E-08 64.7 4.1 34 185-218 50-83 (322)
156 2r62_A Cell division protease 96.8 0.00034 1.2E-08 64.3 1.6 33 186-218 44-76 (268)
157 2x8a_A Nuclear valosin-contain 96.8 0.00082 2.8E-08 63.6 4.1 31 187-217 45-75 (274)
158 4b4t_J 26S protease regulatory 96.8 0.00074 2.5E-08 68.4 3.8 34 185-218 181-214 (405)
159 2ce7_A Cell division protein F 96.7 0.0014 4.7E-08 67.5 5.8 33 186-218 49-81 (476)
160 2qp9_X Vacuolar protein sortin 96.7 0.00096 3.3E-08 65.2 3.9 33 186-218 84-116 (355)
161 3pfi_A Holliday junction ATP-d 96.7 0.0011 3.9E-08 62.9 4.3 34 186-219 55-88 (338)
162 3d8b_A Fidgetin-like protein 1 96.7 0.0011 3.7E-08 64.7 4.2 33 185-217 116-148 (357)
163 3vfd_A Spastin; ATPase, microt 96.6 0.0012 4.2E-08 64.8 4.3 33 185-217 147-179 (389)
164 1iy2_A ATP-dependent metallopr 96.6 0.0013 4.6E-08 61.2 4.3 32 187-218 74-105 (278)
165 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0012 4.2E-08 63.6 4.1 32 185-216 44-76 (322)
166 2c9o_A RUVB-like 1; hexameric 96.6 0.0013 4.3E-08 66.4 4.4 34 185-218 62-97 (456)
167 1ye8_A Protein THEP1, hypothet 96.6 0.001 3.6E-08 59.1 3.3 28 187-214 1-28 (178)
168 3bos_A Putative DNA replicatio 96.6 0.001 3.6E-08 58.7 3.3 37 185-221 51-92 (242)
169 3syl_A Protein CBBX; photosynt 96.6 0.00063 2.1E-08 63.6 1.9 28 184-211 65-92 (309)
170 4b4t_H 26S protease regulatory 96.6 0.001 3.4E-08 68.7 3.5 34 185-218 242-275 (467)
171 1znw_A Guanylate kinase, GMP k 96.6 0.0013 4.4E-08 58.8 3.9 28 184-211 18-45 (207)
172 2kjq_A DNAA-related protein; s 96.6 0.00093 3.2E-08 57.7 2.8 35 185-219 35-74 (149)
173 2w58_A DNAI, primosome compone 96.6 0.0022 7.4E-08 56.4 5.2 36 187-222 55-95 (202)
174 4b4t_I 26S protease regulatory 96.6 0.0013 4.3E-08 67.4 4.0 34 185-218 215-248 (437)
175 2qmh_A HPR kinase/phosphorylas 96.5 0.0013 4.5E-08 61.1 3.1 37 184-221 32-68 (205)
176 1in4_A RUVB, holliday junction 96.5 0.0018 6.1E-08 62.5 4.1 29 187-215 52-80 (334)
177 1sxj_A Activator 1 95 kDa subu 96.4 0.0019 6.4E-08 66.3 4.3 33 186-218 77-109 (516)
178 1l8q_A Chromosomal replication 96.4 0.0022 7.4E-08 60.9 4.0 37 185-221 36-77 (324)
179 3co5_A Putative two-component 96.3 0.00097 3.3E-08 56.5 1.2 32 185-217 26-57 (143)
180 3pvs_A Replication-associated 96.3 0.007 2.4E-07 61.4 7.7 32 187-218 51-82 (447)
181 2r44_A Uncharacterized protein 96.3 0.0019 6.4E-08 61.4 3.2 31 186-216 46-76 (331)
182 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0021 7.3E-08 60.2 3.4 31 186-216 38-68 (324)
183 3uk6_A RUVB-like 2; hexameric 96.2 0.0031 1.1E-07 60.3 4.4 32 185-216 69-102 (368)
184 2zan_A Vacuolar protein sortin 96.2 0.0029 9.9E-08 63.8 4.3 38 185-222 166-206 (444)
185 3tqc_A Pantothenate kinase; bi 96.2 0.0027 9.3E-08 62.2 3.8 34 187-220 93-133 (321)
186 1htw_A HI0065; nucleotide-bind 96.2 0.0029 9.8E-08 55.5 3.6 27 184-210 31-57 (158)
187 2qby_A CDC6 homolog 1, cell di 96.2 0.0032 1.1E-07 59.5 4.0 34 185-218 44-83 (386)
188 2v1u_A Cell division control p 96.2 0.0038 1.3E-07 59.2 4.5 34 185-218 43-85 (387)
189 2qby_B CDC6 homolog 3, cell di 96.1 0.0036 1.2E-07 59.9 4.3 33 186-218 45-88 (384)
190 4fcw_A Chaperone protein CLPB; 96.1 0.0027 9.2E-08 59.2 3.3 24 187-210 48-71 (311)
191 3pxg_A Negative regulator of g 96.1 0.0032 1.1E-07 63.9 4.1 36 184-219 199-244 (468)
192 1njg_A DNA polymerase III subu 96.1 0.005 1.7E-07 53.4 4.7 26 187-212 46-71 (250)
193 1svm_A Large T antigen; AAA+ f 96.1 0.0043 1.5E-07 62.0 4.9 34 183-216 166-199 (377)
194 3m6a_A ATP-dependent protease 96.1 0.0032 1.1E-07 65.3 4.1 33 185-217 107-139 (543)
195 3cf2_A TER ATPase, transitiona 96.1 0.0049 1.7E-07 67.4 5.7 41 186-226 511-553 (806)
196 1odf_A YGR205W, hypothetical 3 96.1 0.003 1E-07 60.7 3.5 37 185-221 30-74 (290)
197 2chg_A Replication factor C sm 96.1 0.0032 1.1E-07 54.2 3.4 25 186-210 38-62 (226)
198 3cf2_A TER ATPase, transitiona 96.0 0.0031 1.1E-07 68.9 3.6 34 185-218 237-270 (806)
199 2ehv_A Hypothetical protein PH 96.0 0.004 1.4E-07 55.8 3.5 25 183-207 27-51 (251)
200 3te6_A Regulatory protein SIR3 95.9 0.0042 1.4E-07 60.8 3.7 27 184-210 43-69 (318)
201 3hu3_A Transitional endoplasmi 95.9 0.0048 1.6E-07 63.5 4.2 34 185-218 237-270 (489)
202 1ypw_A Transitional endoplasmi 95.9 0.0038 1.3E-07 67.8 3.5 34 185-218 237-270 (806)
203 3aez_A Pantothenate kinase; tr 95.9 0.0043 1.5E-07 60.1 3.5 37 184-220 88-131 (312)
204 2bjv_A PSP operon transcriptio 95.8 0.0056 1.9E-07 56.2 4.0 33 185-217 28-63 (265)
205 4a74_A DNA repair and recombin 95.8 0.0052 1.8E-07 54.3 3.6 27 184-210 23-49 (231)
206 3u61_B DNA polymerase accessor 95.8 0.0065 2.2E-07 57.3 4.4 32 187-218 49-80 (324)
207 2i3b_A HCR-ntpase, human cance 95.8 0.0051 1.7E-07 55.3 3.4 25 186-210 1-25 (189)
208 2dhr_A FTSH; AAA+ protein, hex 95.8 0.006 2E-07 63.1 4.3 33 186-218 64-96 (499)
209 3tif_A Uncharacterized ABC tra 95.8 0.0044 1.5E-07 57.4 3.0 28 183-210 28-55 (235)
210 3pxi_A Negative regulator of g 95.8 0.0056 1.9E-07 65.4 4.1 36 184-219 199-244 (758)
211 1fnn_A CDC6P, cell division co 95.7 0.0067 2.3E-07 57.8 4.1 31 188-218 46-80 (389)
212 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0066 2.3E-07 53.4 3.7 28 183-210 20-47 (235)
213 2pcj_A ABC transporter, lipopr 95.7 0.0053 1.8E-07 56.4 3.1 28 183-210 27-54 (224)
214 2orw_A Thymidine kinase; TMTK, 95.6 0.0083 2.8E-07 53.4 3.9 26 185-210 2-27 (184)
215 2oap_1 GSPE-2, type II secreti 95.6 0.0095 3.3E-07 61.7 4.9 27 185-211 259-285 (511)
216 2v9p_A Replication protein E1; 95.6 0.0071 2.4E-07 58.8 3.7 29 182-210 122-150 (305)
217 2cbz_A Multidrug resistance-as 95.5 0.0066 2.3E-07 56.3 3.0 28 183-210 28-55 (237)
218 1ejf_A Progesterone receptor P 95.5 0.0033 1.1E-07 53.3 0.8 84 80-169 5-89 (125)
219 1a5t_A Delta prime, HOLB; zinc 95.5 0.017 5.9E-07 55.5 6.0 44 170-213 8-51 (334)
220 1b0u_A Histidine permease; ABC 95.4 0.0069 2.4E-07 57.0 3.0 28 183-210 29-56 (262)
221 1p6x_A Thymidine kinase; P-loo 95.4 0.0044 1.5E-07 61.2 1.7 30 184-213 5-34 (334)
222 1rj9_A FTSY, signal recognitio 95.4 0.0086 3E-07 57.8 3.7 26 185-210 101-126 (304)
223 4g1u_C Hemin import ATP-bindin 95.4 0.007 2.4E-07 57.2 3.0 28 183-210 34-61 (266)
224 2qgz_A Helicase loader, putati 95.4 0.0097 3.3E-07 57.1 4.0 39 186-224 152-196 (308)
225 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0085 2.9E-07 55.9 3.5 27 183-209 26-52 (250)
226 1ji0_A ABC transporter; ATP bi 95.4 0.0073 2.5E-07 56.0 3.0 28 183-210 29-56 (240)
227 1g6h_A High-affinity branched- 95.4 0.0074 2.5E-07 56.5 3.0 28 183-210 30-57 (257)
228 2ff7_A Alpha-hemolysin translo 95.4 0.0074 2.5E-07 56.3 3.0 28 183-210 32-59 (247)
229 2qen_A Walker-type ATPase; unk 95.4 0.0094 3.2E-07 55.7 3.7 34 186-219 31-64 (350)
230 2pze_A Cystic fibrosis transme 95.4 0.0077 2.6E-07 55.4 3.0 28 183-210 31-58 (229)
231 3gfo_A Cobalt import ATP-bindi 95.3 0.0077 2.6E-07 57.4 3.0 28 183-210 31-58 (275)
232 3tqf_A HPR(Ser) kinase; transf 95.3 0.011 3.9E-07 53.8 3.9 37 184-221 14-50 (181)
233 2eyu_A Twitching motility prot 95.3 0.0094 3.2E-07 56.1 3.5 27 184-210 23-49 (261)
234 1wh0_A Ubiquitin carboxyl-term 95.3 0.0033 1.1E-07 54.4 0.3 87 78-169 19-118 (134)
235 2olj_A Amino acid ABC transpor 95.3 0.0081 2.8E-07 56.8 3.0 27 184-210 48-74 (263)
236 2zu0_C Probable ATP-dependent 95.3 0.0097 3.3E-07 56.2 3.5 27 183-209 43-69 (267)
237 1mv5_A LMRA, multidrug resista 95.3 0.0076 2.6E-07 55.9 2.7 28 183-210 25-52 (243)
238 3b85_A Phosphate starvation-in 95.3 0.0085 2.9E-07 54.7 3.0 25 185-209 21-45 (208)
239 1lw7_A Transcriptional regulat 95.3 0.0091 3.1E-07 58.2 3.3 28 186-213 170-197 (365)
240 3b9q_A Chloroplast SRP recepto 95.3 0.0097 3.3E-07 57.4 3.4 26 185-210 99-124 (302)
241 2ixe_A Antigen peptide transpo 95.3 0.0085 2.9E-07 56.7 3.0 28 183-210 42-69 (271)
242 2ghi_A Transport protein; mult 95.2 0.0087 3E-07 56.3 3.0 28 183-210 43-70 (260)
243 1sgw_A Putative ABC transporte 95.2 0.0083 2.8E-07 55.1 2.8 27 184-210 33-59 (214)
244 1ypw_A Transitional endoplasmi 95.2 0.0056 1.9E-07 66.5 1.8 33 185-217 510-542 (806)
245 2ihy_A ABC transporter, ATP-bi 95.2 0.0094 3.2E-07 56.8 3.0 27 184-210 45-71 (279)
246 2cvh_A DNA repair and recombin 95.2 0.012 4.2E-07 51.6 3.6 37 183-219 17-55 (220)
247 2yz2_A Putative ABC transporte 95.1 0.0097 3.3E-07 56.1 3.0 28 183-210 30-57 (266)
248 2qi9_C Vitamin B12 import ATP- 95.1 0.0099 3.4E-07 55.7 3.0 28 183-210 23-50 (249)
249 1vpl_A ABC transporter, ATP-bi 95.1 0.01 3.4E-07 56.0 3.0 28 183-210 38-65 (256)
250 2z4s_A Chromosomal replication 95.1 0.012 4.2E-07 59.2 3.8 36 186-221 130-172 (440)
251 2f1r_A Molybdopterin-guanine d 95.0 0.0081 2.8E-07 53.3 2.0 24 187-210 3-26 (171)
252 1n0w_A DNA repair protein RAD5 95.0 0.014 4.8E-07 52.1 3.5 27 183-209 21-47 (243)
253 1r6b_X CLPA protein; AAA+, N-t 95.0 0.012 4.2E-07 62.5 3.7 30 188-217 490-519 (758)
254 3e70_C DPA, signal recognition 95.0 0.013 4.4E-07 57.3 3.4 27 184-210 127-153 (328)
255 3fvq_A Fe(3+) IONS import ATP- 95.0 0.014 4.7E-07 58.1 3.7 27 184-210 28-54 (359)
256 2nq2_C Hypothetical ABC transp 95.0 0.012 3.9E-07 55.3 3.0 28 183-210 28-55 (253)
257 1tue_A Replication protein E1; 95.0 0.012 4.1E-07 54.9 3.0 31 186-216 58-88 (212)
258 1g8p_A Magnesium-chelatase 38 94.9 0.0082 2.8E-07 56.7 1.9 26 186-211 45-70 (350)
259 1sxj_E Activator 1 40 kDa subu 94.9 0.017 5.8E-07 54.8 4.1 23 188-210 38-60 (354)
260 2px0_A Flagellar biosynthesis 94.9 0.016 5.4E-07 55.6 3.9 35 185-219 104-144 (296)
261 1sxj_D Activator 1 41 kDa subu 94.9 0.015 5E-07 54.9 3.6 25 187-211 59-83 (353)
262 1cr0_A DNA primase/helicase; R 94.9 0.017 5.7E-07 54.1 3.9 45 162-210 15-59 (296)
263 1qvr_A CLPB protein; coiled co 94.9 0.013 4.6E-07 63.6 3.5 34 185-218 190-233 (854)
264 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.2E-07 54.1 3.4 24 187-210 25-48 (240)
265 1xjc_A MOBB protein homolog; s 94.8 0.018 6.1E-07 51.4 3.6 24 187-210 5-28 (169)
266 3kta_A Chromosome segregation 94.8 0.024 8.1E-07 48.8 4.2 26 187-212 27-52 (182)
267 2chq_A Replication factor C sm 94.8 0.016 5.6E-07 53.5 3.4 23 188-210 40-62 (319)
268 3rlf_A Maltose/maltodextrin im 94.8 0.016 5.5E-07 58.1 3.5 27 184-210 27-53 (381)
269 1jr3_A DNA polymerase III subu 94.7 0.03 1E-06 53.2 5.2 27 186-212 38-64 (373)
270 1z47_A CYSA, putative ABC-tran 94.7 0.016 5.6E-07 57.4 3.5 27 184-210 39-65 (355)
271 2gza_A Type IV secretion syste 94.7 0.015 5.2E-07 57.1 3.2 28 184-211 173-200 (361)
272 4gzl_A RAS-related C3 botulinu 94.7 0.019 6.3E-07 50.5 3.5 45 165-209 9-53 (204)
273 2yyz_A Sugar ABC transporter, 94.7 0.017 5.8E-07 57.3 3.5 27 184-210 27-53 (359)
274 1sxj_C Activator 1 40 kDa subu 94.7 0.017 5.9E-07 55.2 3.5 24 188-211 48-71 (340)
275 1vma_A Cell division protein F 94.7 0.017 5.8E-07 55.9 3.4 35 185-219 103-142 (306)
276 2it1_A 362AA long hypothetical 94.7 0.017 5.9E-07 57.4 3.5 27 184-210 27-53 (362)
277 1of1_A Thymidine kinase; trans 94.7 0.0081 2.8E-07 60.3 1.2 29 183-211 46-74 (376)
278 2og2_A Putative signal recogni 94.6 0.017 5.8E-07 57.3 3.4 26 185-210 156-181 (359)
279 2yhs_A FTSY, cell division pro 94.6 0.031 1.1E-06 58.1 5.4 26 185-210 292-317 (503)
280 2bbs_A Cystic fibrosis transme 94.6 0.017 5.7E-07 55.5 3.2 28 183-210 61-88 (290)
281 1v43_A Sugar-binding transport 94.6 0.018 6.2E-07 57.4 3.5 27 184-210 35-61 (372)
282 1e2k_A Thymidine kinase; trans 94.6 0.0073 2.5E-07 59.5 0.6 27 185-211 3-29 (331)
283 1g29_1 MALK, maltose transport 94.6 0.019 6.4E-07 57.2 3.5 27 184-210 27-53 (372)
284 2hf9_A Probable hydrogenase ni 94.6 0.029 1E-06 49.6 4.5 26 185-210 37-62 (226)
285 1iqp_A RFCS; clamp loader, ext 94.6 0.022 7.5E-07 52.8 3.7 25 187-211 47-71 (327)
286 1nlf_A Regulatory protein REPA 94.5 0.023 8E-07 52.9 3.9 27 184-210 28-54 (279)
287 3d31_A Sulfate/molybdate ABC t 94.5 0.015 5.1E-07 57.5 2.6 27 184-210 24-50 (348)
288 3nh6_A ATP-binding cassette SU 94.5 0.012 4.3E-07 57.0 2.1 26 185-210 79-104 (306)
289 1ojl_A Transcriptional regulat 94.5 0.021 7.2E-07 54.5 3.6 32 185-216 24-58 (304)
290 2pjz_A Hypothetical protein ST 94.5 0.017 5.7E-07 54.7 2.9 25 186-210 30-54 (263)
291 2dr3_A UPF0273 protein PH0284; 94.5 0.025 8.6E-07 50.4 3.9 37 183-219 20-61 (247)
292 2ce2_X GTPase HRAS; signaling 94.5 0.022 7.5E-07 46.6 3.2 24 186-209 3-26 (166)
293 3gd7_A Fusion complex of cysti 94.5 0.021 7.3E-07 57.2 3.7 28 183-210 44-71 (390)
294 4dzz_A Plasmid partitioning pr 94.5 0.2 6.7E-06 43.4 9.5 88 188-290 3-107 (206)
295 1r6b_X CLPA protein; AAA+, N-t 94.4 0.024 8.2E-07 60.3 4.2 27 184-210 205-231 (758)
296 3tui_C Methionine import ATP-b 94.3 0.023 7.8E-07 56.8 3.5 27 184-210 52-78 (366)
297 1sxj_B Activator 1 37 kDa subu 94.3 0.038 1.3E-06 51.1 4.8 23 188-210 44-66 (323)
298 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.017 5.8E-07 59.7 2.6 29 183-211 38-66 (500)
299 1np6_A Molybdopterin-guanine d 94.3 0.026 9E-07 50.2 3.5 24 187-210 7-30 (174)
300 2wsm_A Hydrogenase expression/ 94.3 0.028 9.7E-07 49.5 3.7 27 185-211 29-55 (221)
301 3k1j_A LON protease, ATP-depen 94.3 0.026 8.8E-07 59.0 3.9 29 185-213 59-87 (604)
302 2wjg_A FEOB, ferrous iron tran 94.3 0.022 7.7E-07 48.4 2.9 26 184-209 5-30 (188)
303 2wji_A Ferrous iron transport 94.2 0.023 7.9E-07 48.0 2.9 23 186-208 3-25 (165)
304 1oxx_K GLCV, glucose, ABC tran 94.2 0.015 5.2E-07 57.4 1.9 27 184-210 29-55 (353)
305 3bwd_D RAC-like GTP-binding pr 94.2 0.032 1.1E-06 46.9 3.8 28 182-209 4-31 (182)
306 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.026 8.8E-07 57.7 3.7 35 184-218 136-176 (460)
307 1kao_A RAP2A; GTP-binding prot 94.2 0.026 8.9E-07 46.3 3.0 25 185-209 2-26 (167)
308 1u8z_A RAS-related protein RAL 94.2 0.027 9.2E-07 46.2 3.1 25 185-209 3-27 (168)
309 2fna_A Conserved hypothetical 94.1 0.052 1.8E-06 50.6 5.3 32 187-218 31-64 (357)
310 2yv5_A YJEQ protein; hydrolase 94.1 0.033 1.1E-06 53.3 4.0 30 181-211 160-189 (302)
311 2ewv_A Twitching motility prot 94.1 0.025 8.7E-07 55.8 3.3 26 185-210 135-160 (372)
312 1xx6_A Thymidine kinase; NESG, 94.1 0.038 1.3E-06 49.9 4.1 27 184-210 6-32 (191)
313 2gj8_A MNME, tRNA modification 94.1 0.03 1E-06 47.9 3.3 25 185-209 3-27 (172)
314 3sop_A Neuronal-specific septi 94.0 0.03 1E-06 53.0 3.5 23 188-210 4-26 (270)
315 1oix_A RAS-related protein RAB 94.0 0.032 1.1E-06 48.5 3.5 24 187-210 30-53 (191)
316 1osn_A Thymidine kinase, VZV-T 94.0 0.016 5.4E-07 57.4 1.6 31 183-213 9-40 (341)
317 1yrb_A ATP(GTP)binding protein 94.0 0.033 1.1E-06 50.5 3.6 35 184-218 12-50 (262)
318 3pxi_A Negative regulator of g 93.9 0.034 1.2E-06 59.4 3.9 29 188-216 523-554 (758)
319 1ko7_A HPR kinase/phosphatase; 93.9 0.04 1.4E-06 53.9 4.1 36 185-221 143-178 (314)
320 2vhj_A Ntpase P4, P4; non- hyd 93.8 0.027 9.4E-07 55.6 2.9 33 185-217 122-156 (331)
321 2f9l_A RAB11B, member RAS onco 93.8 0.036 1.2E-06 48.3 3.3 23 187-209 6-28 (199)
322 1c1y_A RAS-related protein RAP 93.8 0.035 1.2E-06 45.8 3.0 24 186-209 3-26 (167)
323 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.024 8.2E-07 55.1 2.4 27 185-211 170-196 (330)
324 2b8t_A Thymidine kinase; deoxy 93.8 0.037 1.3E-06 51.3 3.5 26 185-210 11-36 (223)
325 3dm5_A SRP54, signal recogniti 93.8 0.091 3.1E-06 53.7 6.7 36 185-220 99-139 (443)
326 1c9k_A COBU, adenosylcobinamid 93.7 0.032 1.1E-06 50.4 2.9 28 189-217 2-31 (180)
327 1pui_A ENGB, probable GTP-bind 93.7 0.021 7.1E-07 49.7 1.6 25 184-208 24-48 (210)
328 2cg9_X CO-chaperone protein SB 93.7 0.016 5.4E-07 49.8 0.8 85 80-170 8-107 (134)
329 2v3c_C SRP54, signal recogniti 93.6 0.024 8.3E-07 57.4 2.2 34 186-219 99-137 (432)
330 2dyk_A GTP-binding protein; GT 93.6 0.04 1.4E-06 45.2 3.2 23 187-209 2-24 (161)
331 1z2a_A RAS-related protein RAB 93.5 0.045 1.6E-06 45.1 3.3 23 187-209 6-28 (168)
332 1yqt_A RNAse L inhibitor; ATP- 93.5 0.039 1.3E-06 57.3 3.5 27 184-210 45-71 (538)
333 3jvv_A Twitching mobility prot 93.5 0.039 1.3E-06 54.5 3.4 26 185-210 122-147 (356)
334 1zu4_A FTSY; GTPase, signal re 93.5 0.04 1.4E-06 53.5 3.4 35 185-219 104-143 (320)
335 1pzn_A RAD51, DNA repair and r 93.4 0.043 1.5E-06 53.7 3.5 27 184-210 129-155 (349)
336 1u0j_A DNA replication protein 93.4 0.12 4.2E-06 49.4 6.6 27 186-212 104-130 (267)
337 3con_A GTPase NRAS; structural 93.4 0.036 1.2E-06 47.3 2.5 27 183-209 18-44 (190)
338 3p32_A Probable GTPase RV1496/ 93.4 0.043 1.5E-06 53.5 3.4 34 185-218 78-116 (355)
339 1u0l_A Probable GTPase ENGC; p 93.4 0.035 1.2E-06 52.9 2.7 29 182-210 165-193 (301)
340 2zej_A Dardarin, leucine-rich 93.4 0.038 1.3E-06 47.4 2.7 22 187-208 3-24 (184)
341 1nij_A Hypothetical protein YJ 93.4 0.048 1.6E-06 52.4 3.7 24 187-210 5-28 (318)
342 2j37_W Signal recognition part 93.3 0.27 9.2E-06 50.9 9.5 34 186-219 101-139 (504)
343 2ged_A SR-beta, signal recogni 93.3 0.058 2E-06 46.1 3.7 25 185-209 47-71 (193)
344 2lkc_A Translation initiation 93.3 0.056 1.9E-06 45.2 3.6 24 185-208 7-30 (178)
345 1j8m_F SRP54, signal recogniti 93.3 0.038 1.3E-06 53.0 2.9 33 186-218 98-135 (297)
346 1ls1_A Signal recognition part 93.2 0.048 1.6E-06 52.1 3.4 34 185-218 97-135 (295)
347 1ek0_A Protein (GTP-binding pr 93.2 0.04 1.4E-06 45.4 2.5 23 187-209 4-26 (170)
348 2iwr_A Centaurin gamma 1; ANK 93.2 0.033 1.1E-06 46.9 2.0 26 184-209 5-30 (178)
349 1qvr_A CLPB protein; coiled co 93.2 0.042 1.4E-06 59.7 3.3 30 187-216 589-621 (854)
350 2a9k_A RAS-related protein RAL 93.2 0.048 1.6E-06 45.8 3.0 27 183-209 15-41 (187)
351 3b5x_A Lipid A export ATP-bind 93.2 0.042 1.4E-06 57.1 3.1 34 184-217 367-404 (582)
352 2qm8_A GTPase/ATPase; G protei 93.1 0.05 1.7E-06 53.0 3.4 27 184-210 53-79 (337)
353 1w5s_A Origin recognition comp 93.1 0.034 1.2E-06 53.4 2.2 26 185-210 49-76 (412)
354 1u94_A RECA protein, recombina 93.1 0.086 2.9E-06 52.0 5.1 50 183-232 60-118 (356)
355 2dpy_A FLII, flagellum-specifi 93.1 0.062 2.1E-06 54.5 4.1 30 182-211 153-182 (438)
356 3b60_A Lipid A export ATP-bind 93.0 0.045 1.5E-06 56.9 3.1 27 184-210 367-393 (582)
357 2rcn_A Probable GTPase ENGC; Y 93.0 0.053 1.8E-06 53.9 3.4 29 182-210 211-239 (358)
358 2fn4_A P23, RAS-related protei 93.0 0.057 1.9E-06 45.1 3.2 25 185-209 8-32 (181)
359 2obl_A ESCN; ATPase, hydrolase 93.0 0.067 2.3E-06 52.6 4.1 29 183-211 68-96 (347)
360 1nrj_B SR-beta, signal recogni 92.9 0.069 2.4E-06 46.8 3.8 26 185-210 11-36 (218)
361 1z0j_A RAB-22, RAS-related pro 92.9 0.061 2.1E-06 44.4 3.2 24 186-209 6-29 (170)
362 3q72_A GTP-binding protein RAD 92.9 0.059 2E-06 44.5 3.1 21 187-207 3-23 (166)
363 3q85_A GTP-binding protein REM 92.9 0.06 2.1E-06 44.6 3.2 22 187-208 3-24 (169)
364 2erx_A GTP-binding protein DI- 92.9 0.061 2.1E-06 44.4 3.2 22 187-208 4-25 (172)
365 1z08_A RAS-related protein RAB 92.9 0.065 2.2E-06 44.4 3.3 23 187-209 7-29 (170)
366 3f9v_A Minichromosome maintena 92.9 0.035 1.2E-06 58.3 2.0 29 188-216 329-357 (595)
367 2nzj_A GTP-binding protein REM 92.9 0.062 2.1E-06 44.7 3.2 22 187-208 5-26 (175)
368 1m2o_B GTP-binding protein SAR 92.8 0.07 2.4E-06 46.2 3.6 25 185-209 22-46 (190)
369 1upt_A ARL1, ADP-ribosylation 92.8 0.07 2.4E-06 44.2 3.4 25 185-209 6-30 (171)
370 1g16_A RAS-related protein SEC 92.8 0.073 2.5E-06 43.9 3.5 23 187-209 4-26 (170)
371 1ky3_A GTP-binding protein YPT 92.8 0.069 2.4E-06 44.6 3.3 24 186-209 8-31 (182)
372 3kl4_A SRP54, signal recogniti 92.7 0.049 1.7E-06 55.5 2.8 35 185-219 96-135 (433)
373 3t1o_A Gliding protein MGLA; G 92.7 0.069 2.4E-06 45.2 3.4 26 186-211 14-39 (198)
374 1t9h_A YLOQ, probable GTPase E 92.7 0.03 1E-06 54.4 1.1 29 181-209 168-196 (307)
375 3oes_A GTPase rhebl1; small GT 92.7 0.063 2.2E-06 46.6 3.1 28 182-209 20-47 (201)
376 1p9r_A General secretion pathw 92.7 0.064 2.2E-06 54.1 3.5 27 185-211 166-192 (418)
377 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.073 2.5E-06 44.5 3.3 24 186-209 7-30 (177)
378 1r2q_A RAS-related protein RAB 92.6 0.076 2.6E-06 43.7 3.3 24 186-209 6-29 (170)
379 3bc1_A RAS-related protein RAB 92.6 0.074 2.5E-06 44.8 3.3 23 187-209 12-34 (195)
380 3tvt_A Disks large 1 tumor sup 92.6 0.34 1.2E-05 46.7 8.4 24 184-210 98-121 (292)
381 2y8e_A RAB-protein 6, GH09086P 92.6 0.059 2E-06 44.9 2.7 25 185-209 13-37 (179)
382 1svi_A GTP-binding protein YSX 92.6 0.085 2.9E-06 45.0 3.7 25 185-209 22-46 (195)
383 3clv_A RAB5 protein, putative; 92.5 0.077 2.6E-06 44.8 3.4 24 186-209 7-30 (208)
384 1z0f_A RAB14, member RAS oncog 92.5 0.078 2.7E-06 44.1 3.3 25 186-210 15-39 (179)
385 2gf0_A GTP-binding protein DI- 92.5 0.087 3E-06 45.0 3.7 25 185-209 7-31 (199)
386 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.057 2E-06 45.4 2.5 25 185-209 4-28 (186)
387 2yl4_A ATP-binding cassette SU 92.5 0.047 1.6E-06 56.9 2.4 27 184-210 368-394 (595)
388 3pqc_A Probable GTP-binding pr 92.5 0.082 2.8E-06 44.8 3.5 25 185-209 22-46 (195)
389 1f6b_A SAR1; gtpases, N-termin 92.5 0.084 2.9E-06 46.1 3.6 25 184-208 23-47 (198)
390 3tw8_B RAS-related protein RAB 92.4 0.071 2.4E-06 44.5 3.0 22 187-208 10-31 (181)
391 3t5g_A GTP-binding protein RHE 92.4 0.054 1.9E-06 45.7 2.3 24 186-209 6-29 (181)
392 2zr9_A Protein RECA, recombina 92.4 0.084 2.9E-06 51.8 4.0 49 183-231 58-115 (349)
393 1yqt_A RNAse L inhibitor; ATP- 92.4 0.07 2.4E-06 55.4 3.5 26 185-210 311-336 (538)
394 2xxa_A Signal recognition part 92.4 0.055 1.9E-06 54.8 2.7 34 186-219 100-139 (433)
395 2hxs_A RAB-26, RAS-related pro 92.4 0.068 2.3E-06 44.7 2.8 25 185-209 5-29 (178)
396 1r8s_A ADP-ribosylation factor 92.4 0.086 3E-06 43.4 3.5 22 188-209 2-23 (164)
397 3ozx_A RNAse L inhibitor; ATP 92.3 0.062 2.1E-06 55.9 3.0 27 184-210 292-318 (538)
398 4dsu_A GTPase KRAS, isoform 2B 92.3 0.084 2.9E-06 44.4 3.3 24 187-210 5-28 (189)
399 3ozx_A RNAse L inhibitor; ATP 92.3 0.057 2E-06 56.1 2.7 26 185-210 24-49 (538)
400 2cxx_A Probable GTP-binding pr 92.3 0.084 2.9E-06 44.6 3.3 22 188-209 3-24 (190)
401 3j16_B RLI1P; ribosome recycli 92.3 0.074 2.5E-06 56.2 3.5 27 184-210 101-127 (608)
402 1m7b_A RND3/RHOE small GTP-bin 92.3 0.09 3.1E-06 44.9 3.5 24 186-209 7-30 (184)
403 3ihw_A Centg3; RAS, centaurin, 92.3 0.075 2.6E-06 45.9 3.0 28 182-209 16-43 (184)
404 2atv_A RERG, RAS-like estrogen 92.2 0.089 3E-06 45.4 3.5 25 185-209 27-51 (196)
405 3qf4_B Uncharacterized ABC tra 92.2 0.056 1.9E-06 56.5 2.5 27 184-210 379-405 (598)
406 3kkq_A RAS-related protein M-R 92.2 0.075 2.6E-06 44.9 2.9 26 184-209 16-41 (183)
407 2bme_A RAB4A, RAS-related prot 92.2 0.093 3.2E-06 44.3 3.5 23 187-209 11-33 (186)
408 3bk7_A ABC transporter ATP-bin 92.1 0.067 2.3E-06 56.5 3.0 27 184-210 115-141 (607)
409 1tf7_A KAIC; homohexamer, hexa 92.1 0.085 2.9E-06 54.1 3.7 38 182-219 35-78 (525)
410 1knx_A Probable HPR(Ser) kinas 92.1 0.078 2.7E-06 51.9 3.2 38 183-221 144-181 (312)
411 2bov_A RAla, RAS-related prote 92.1 0.082 2.8E-06 45.4 3.1 26 184-209 12-37 (206)
412 1moz_A ARL1, ADP-ribosylation 92.1 0.067 2.3E-06 45.1 2.5 23 185-207 17-39 (183)
413 3lxx_A GTPase IMAP family memb 92.1 0.082 2.8E-06 47.7 3.2 23 186-208 29-51 (239)
414 3k53_A Ferrous iron transport 92.1 0.088 3E-06 48.8 3.5 25 185-209 2-26 (271)
415 2g6b_A RAS-related protein RAB 92.1 0.095 3.2E-06 43.9 3.3 24 186-209 10-33 (180)
416 2oil_A CATX-8, RAS-related pro 91.9 0.096 3.3E-06 44.8 3.3 23 187-209 26-48 (193)
417 2efe_B Small GTP-binding prote 91.9 0.1 3.4E-06 43.8 3.3 24 186-209 12-35 (181)
418 2r8r_A Sensor protein; KDPD, P 91.9 0.12 4E-06 48.6 4.1 33 187-219 7-44 (228)
419 3bk7_A ABC transporter ATP-bin 91.9 0.086 2.9E-06 55.6 3.5 26 185-210 381-406 (607)
420 2p67_A LAO/AO transport system 91.8 0.097 3.3E-06 50.7 3.6 27 184-210 54-80 (341)
421 3cmw_A Protein RECA, recombina 91.8 0.13 4.6E-06 60.3 5.2 62 184-245 1080-1153(1706)
422 4a82_A Cystic fibrosis transme 91.7 0.05 1.7E-06 56.6 1.5 27 184-210 365-391 (578)
423 1fzq_A ADP-ribosylation factor 91.7 0.1 3.6E-06 44.7 3.2 25 185-209 15-39 (181)
424 3lda_A DNA repair protein RAD5 91.7 0.11 3.6E-06 52.3 3.7 26 184-209 176-201 (400)
425 3dz8_A RAS-related protein RAB 91.6 0.12 4.1E-06 44.3 3.6 25 186-210 23-47 (191)
426 3tkl_A RAS-related protein RAB 91.6 0.11 3.8E-06 44.2 3.3 23 187-209 17-39 (196)
427 1ksh_A ARF-like protein 2; sma 91.6 0.1 3.6E-06 44.2 3.1 25 185-209 17-41 (186)
428 1kjw_A Postsynaptic density pr 91.6 0.44 1.5E-05 45.7 7.8 23 185-210 104-126 (295)
429 3vqt_A RF-3, peptide chain rel 91.6 0.16 5.4E-06 52.9 5.1 98 185-288 30-160 (548)
430 2h17_A ADP-ribosylation factor 91.6 0.1 3.5E-06 44.4 3.0 28 182-209 17-44 (181)
431 3qf4_A ABC transporter, ATP-bi 91.5 0.054 1.8E-06 56.6 1.5 28 184-211 367-394 (587)
432 1vg8_A RAS-related protein RAB 91.5 0.12 3.9E-06 44.6 3.3 25 186-210 8-32 (207)
433 2fh5_B SR-beta, signal recogni 91.5 0.12 4.1E-06 45.1 3.5 26 185-210 6-31 (214)
434 2xtp_A GTPase IMAP family memb 91.5 0.11 3.9E-06 47.3 3.4 25 185-209 21-45 (260)
435 2z43_A DNA repair and recombin 91.5 0.11 3.9E-06 49.7 3.6 37 183-219 104-151 (324)
436 2fg5_A RAB-22B, RAS-related pr 91.4 0.12 4.2E-06 44.4 3.5 24 186-209 23-46 (192)
437 2qag_B Septin-6, protein NEDD5 91.4 0.095 3.2E-06 53.3 3.1 26 184-209 38-65 (427)
438 1zj6_A ADP-ribosylation factor 91.4 0.12 4.1E-06 44.1 3.4 24 185-208 15-38 (187)
439 1z06_A RAS-related protein RAB 91.4 0.1 3.5E-06 44.6 2.9 25 185-209 19-43 (189)
440 4bas_A ADP-ribosylation factor 91.4 0.093 3.2E-06 44.8 2.6 27 182-208 13-39 (199)
441 1x3s_A RAS-related protein RAB 91.3 0.13 4.3E-06 43.7 3.3 25 185-209 14-38 (195)
442 2j9r_A Thymidine kinase; TK1, 91.3 0.12 4.2E-06 47.9 3.4 27 184-210 26-52 (214)
443 2p5s_A RAS and EF-hand domain 91.3 0.12 4.2E-06 44.7 3.3 25 185-209 27-51 (199)
444 2gf9_A RAS-related protein RAB 91.3 0.13 4.4E-06 44.0 3.3 23 187-209 23-45 (189)
445 2j0v_A RAC-like GTP-binding pr 91.3 0.11 3.9E-06 45.1 3.1 26 184-209 7-32 (212)
446 3hr8_A Protein RECA; alpha and 91.2 0.12 4.1E-06 51.2 3.6 37 183-219 58-99 (356)
447 3j16_B RLI1P; ribosome recycli 91.2 0.11 3.8E-06 54.9 3.5 25 186-210 378-402 (608)
448 2www_A Methylmalonic aciduria 91.2 0.12 4E-06 50.5 3.4 25 186-210 74-98 (349)
449 2zts_A Putative uncharacterize 91.1 0.15 5.1E-06 45.3 3.8 26 183-208 27-52 (251)
450 3kjh_A CO dehydrogenase/acetyl 91.1 0.094 3.2E-06 46.6 2.4 32 188-219 2-38 (254)
451 3c5c_A RAS-like protein 12; GD 91.1 0.13 4.5E-06 44.2 3.3 25 185-209 20-44 (187)
452 1zbd_A Rabphilin-3A; G protein 91.1 0.13 4.3E-06 44.5 3.2 23 187-209 9-31 (203)
453 2ffh_A Protein (FFH); SRP54, s 91.1 0.12 4E-06 52.5 3.4 35 185-219 97-136 (425)
454 2bcg_Y Protein YP2, GTP-bindin 91.1 0.14 4.8E-06 44.4 3.5 23 187-209 9-31 (206)
455 1zd9_A ADP-ribosylation factor 91.1 0.14 4.6E-06 44.0 3.3 24 186-209 22-45 (188)
456 3reg_A RHO-like small GTPase; 91.1 0.14 4.6E-06 44.0 3.3 25 185-209 22-46 (194)
457 2a5j_A RAS-related protein RAB 91.0 0.13 4.6E-06 44.0 3.3 24 186-209 21-44 (191)
458 2fv8_A H6, RHO-related GTP-bin 91.0 0.12 4.2E-06 45.1 3.1 25 185-209 24-48 (207)
459 2q3h_A RAS homolog gene family 91.0 0.13 4.4E-06 44.3 3.1 25 184-208 18-42 (201)
460 4ag6_A VIRB4 ATPase, type IV s 90.9 0.14 4.7E-06 50.0 3.7 26 185-210 34-59 (392)
461 2qnr_A Septin-2, protein NEDD5 90.9 0.12 4E-06 49.4 3.1 22 187-208 19-40 (301)
462 2b6h_A ADP-ribosylation factor 90.9 0.13 4.6E-06 44.5 3.2 23 185-207 28-50 (192)
463 1gwn_A RHO-related GTP-binding 90.9 0.15 5E-06 45.1 3.5 24 186-209 28-51 (205)
464 1v5w_A DMC1, meiotic recombina 90.9 0.16 5.5E-06 49.2 4.1 37 183-219 119-166 (343)
465 2ew1_A RAS-related protein RAB 90.9 0.15 5.1E-06 45.0 3.5 24 186-209 26-49 (201)
466 2i1q_A DNA repair and recombin 90.8 0.12 4.2E-06 49.0 3.0 27 183-209 95-121 (322)
467 2r2a_A Uncharacterized protein 90.8 0.16 5.6E-06 45.9 3.7 24 186-209 5-28 (199)
468 1tf7_A KAIC; homohexamer, hexa 90.7 0.15 5.1E-06 52.2 3.8 29 182-210 277-305 (525)
469 2a5y_B CED-4; apoptosis; HET: 90.7 0.16 5.3E-06 52.2 3.9 23 186-208 152-174 (549)
470 3cph_A RAS-related protein SEC 90.7 0.15 5.2E-06 44.0 3.3 25 185-209 19-43 (213)
471 2o52_A RAS-related protein RAB 90.6 0.15 5.2E-06 44.3 3.3 23 186-208 25-47 (200)
472 2il1_A RAB12; G-protein, GDP, 90.6 0.14 4.8E-06 44.2 3.0 23 186-208 26-48 (192)
473 3llu_A RAS-related GTP-binding 90.6 0.16 5.5E-06 43.9 3.4 24 185-208 19-42 (196)
474 2atx_A Small GTP binding prote 90.6 0.17 5.7E-06 43.3 3.5 23 187-209 19-41 (194)
475 2h57_A ADP-ribosylation factor 90.5 0.12 4.3E-06 44.1 2.6 26 184-209 19-44 (190)
476 3cbq_A GTP-binding protein REM 90.5 0.12 4.1E-06 45.1 2.5 23 186-208 23-45 (195)
477 2gco_A H9, RHO-related GTP-bin 90.5 0.17 5.9E-06 43.9 3.5 23 187-209 26-48 (201)
478 3bh0_A DNAB-like replicative h 90.4 0.21 7.2E-06 47.8 4.4 29 182-210 64-92 (315)
479 3euj_A Chromosome partition pr 90.4 0.15 5.2E-06 52.6 3.5 24 187-210 30-53 (483)
480 2iw3_A Elongation factor 3A; a 90.4 0.14 4.9E-06 57.1 3.5 25 184-208 459-483 (986)
481 2f7s_A C25KG, RAS-related prot 90.3 0.16 5.4E-06 44.4 3.1 22 187-208 26-47 (217)
482 3q3j_B RHO-related GTP-binding 90.3 0.17 5.8E-06 44.8 3.3 26 184-209 25-50 (214)
483 2fu5_C RAS-related protein RAB 90.3 0.099 3.4E-06 44.1 1.7 22 187-208 9-30 (183)
484 3lxw_A GTPase IMAP family memb 90.3 0.15 5.3E-06 46.8 3.1 24 185-208 20-43 (247)
485 2x77_A ADP-ribosylation factor 90.2 0.13 4.5E-06 43.8 2.5 23 185-207 21-43 (189)
486 2hup_A RAS-related protein RAB 90.2 0.19 6.4E-06 43.9 3.5 23 187-209 30-52 (201)
487 2r6a_A DNAB helicase, replicat 90.1 0.22 7.5E-06 50.0 4.4 29 182-210 199-227 (454)
488 3def_A T7I23.11 protein; chlor 90.0 0.19 6.4E-06 46.4 3.5 24 185-208 35-58 (262)
489 2j1l_A RHO-related GTP-binding 90.0 0.18 6.3E-06 44.4 3.3 24 185-208 33-56 (214)
490 3cmu_A Protein RECA, recombina 90.0 0.28 9.7E-06 58.5 5.7 50 183-232 1424-1482(2050)
491 4dkx_A RAS-related protein RAB 90.0 0.18 6.2E-06 45.7 3.3 26 184-209 11-36 (216)
492 4aby_A DNA repair protein RECN 89.9 0.084 2.9E-06 51.5 1.1 27 185-212 60-86 (415)
493 2qu8_A Putative nucleolar GTP- 89.8 0.17 5.9E-06 45.0 3.0 24 185-208 28-51 (228)
494 1tq4_A IIGP1, interferon-induc 89.8 0.18 6.1E-06 50.9 3.4 25 186-210 69-93 (413)
495 2fz4_A DNA repair protein RAD2 89.8 0.3 1E-05 44.6 4.6 30 182-211 104-133 (237)
496 3end_A Light-independent proto 89.7 0.2 6.8E-06 46.9 3.5 34 185-218 40-78 (307)
497 3e1s_A Exodeoxyribonuclease V, 89.6 0.21 7.2E-06 52.2 3.9 29 182-210 200-228 (574)
498 2cjw_A GTP-binding protein GEM 89.6 0.2 6.8E-06 43.6 3.2 23 187-209 7-29 (192)
499 3upu_A ATP-dependent DNA helic 89.5 0.19 6.5E-06 50.4 3.4 23 188-210 47-69 (459)
500 4dhe_A Probable GTP-binding pr 89.4 0.13 4.5E-06 45.0 1.9 25 185-209 28-52 (223)
No 1
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.4e-26 Score=208.41 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=139.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
+++.|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+++|.++++.+....++||+|||
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~gg 103 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGG 103 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred CcccccccHHHHHhhcC-CcEEEEEcCccc-----c----------ccCH---HHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486 265 GQQGAAARADKWQHLYA-GFTVWLSQTEAM-----D----------ENSA---KEEARRHVKDGKLGYSNADVVVKLQGW 325 (388)
Q Consensus 265 G~~gav~r~enr~~L~~-g~VVyLd~~~e~-----D----------~~d~---~e~l~~l~~eR~~~Y~~AD~vV~~d~~ 325 (388)
| .+...++++.+.. +.+|||++|+++ . ..+. .+.+.+++++|.+.|+.||++|++++.
T Consensus 104 g---~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~ 180 (199)
T 3vaa_A 104 G---APCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNADEL 180 (199)
T ss_dssp T---GGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEECCCC
T ss_pred c---EEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEECCCC
Confidence 9 5888899988875 999999999987 1 1122 567899999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHHHhh
Q 016486 326 DADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 326 s~e~~eeVa~eIl~~L~~~~ 345 (388)
+++ +++++|++.|+.++
T Consensus 181 s~e---e~~~~I~~~l~~~l 197 (199)
T 3vaa_A 181 EDR---WQIESSVQRLQELL 197 (199)
T ss_dssp SSH---HHHHHHHHHHHHHT
T ss_pred CHH---HHHHHHHHHHHHHh
Confidence 765 99999999998875
No 2
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.94 E-value=8.3e-27 Score=221.55 Aligned_cols=164 Identities=21% Similarity=0.320 Sum_probs=143.6
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhccCcHHHHHHHHHHHHHHhcC-CCe
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSH-VRA 258 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~-~~~ 258 (388)
.+.+++..|+|+|+|||||||+++.||+.||++|+|+|.++++.. |+++.++|+..|++.||++|.+++.++... .+.
T Consensus 43 ~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~ 122 (250)
T 3nwj_A 43 KPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQV 122 (250)
T ss_dssp HHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCc
Confidence 456678999999999999999999999999999999999999999 999999999999999999999999998865 689
Q ss_pred EEEecCCcccccccHHHHHhhcCCcEEEEEcCccc------c-c--------c-C-------HHHHHHHHHHHhHhcccc
Q 016486 259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM------D-E--------N-S-------AKEEARRHVKDGKLGYSN 315 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~------D-~--------~-d-------~~e~l~~l~~eR~~~Y~~ 315 (388)
||+|||| +++++++|..|+++++|||++|+++ . . . + ..+.+.+++++|.+.|+.
T Consensus 123 Via~GgG---~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ 199 (250)
T 3nwj_A 123 VVSTGGG---AVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTK 199 (250)
T ss_dssp EEECCGG---GGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEecCCC---eecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 9999999 6999999999988999999999987 1 0 0 0 146789999999999999
Q ss_pred CcEEE------------EcCCCCcccHHHHHHHHHHHHHHhhhcCCC
Q 016486 316 ADVVV------------KLQGWDADHAKSVAQASLSALKQLIQSDKK 350 (388)
Q Consensus 316 AD~vV------------~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~ 350 (388)
||++| ++++.+ +++++++|++.++.++..++.
T Consensus 200 ad~vi~~~~~~~~~~~iDTs~~s---~eev~~~I~~~i~~~~~~~~~ 243 (250)
T 3nwj_A 200 ASARVSLENITLKLGYRSVSDLT---PAEIAIEAFEQVQSYLEKEDG 243 (250)
T ss_dssp SSEEEEHHHHHHHHTCSSGGGCC---HHHHHHHHHHHHHHHHHTC--
T ss_pred CCEEEEecccccccccccCCCCC---HHHHHHHHHHHHHHHhhcccc
Confidence 99999 556665 459999999999998876554
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.94 E-value=7.4e-27 Score=205.68 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=136.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG 265 (388)
+.+|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+.+|.+++..+....++||+||||
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~ 84 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGG 84 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999998777899999999
Q ss_pred cccccccHHHHHhhcC-CcEEEEEcCccc---------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486 266 QQGAAARADKWQHLYA-GFTVWLSQTEAM---------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA 327 (388)
Q Consensus 266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~---------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~ 327 (388)
+++.+.+++.|+. +++|||++|+++ + ..+..+.+++++.+|.+.|+. ||++|++++.++
T Consensus 85 ---~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~ 161 (185)
T 3trf_A 85 ---VVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNP 161 (185)
T ss_dssp ---GGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCH
T ss_pred ---eecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCH
Confidence 5899999999986 899999999876 0 012357799999999999998 999999998765
Q ss_pred ccHHHHHHHHHHHHHHhhh
Q 016486 328 DHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 328 e~~eeVa~eIl~~L~~~~~ 346 (388)
++++++|++.+...+.
T Consensus 162 ---~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 162 ---RQLATQILVDIKQTYS 177 (185)
T ss_dssp ---HHHHHHHHHHSCC---
T ss_pred ---HHHHHHHHHHHHHHhh
Confidence 4999999988876554
No 4
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.89 E-value=4.6e-23 Score=181.62 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=128.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
+.|+|+|++||||||+|+.||++||++++|+|+++++..|.++.++|...|+..|++.+.++++.+....++||++|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~- 81 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG- 81 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc-
Confidence 5699999999999999999999999999999999999999999999988899999999998888887666789999988
Q ss_pred ccccccHHHHHhhcCCcEEEEEcCccc--------c------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486 267 QGAAARADKWQHLYAGFTVWLSQTEAM--------D------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK 331 (388)
Q Consensus 267 ~gav~r~enr~~L~~g~VVyLd~~~e~--------D------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e 331 (388)
+++.+.+|+.|+.+.+|||++|.++ + ..+..+.+..++.+|.+.|.. +|++|++++.++ +
T Consensus 82 --~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~---e 156 (184)
T 2iyv_A 82 --AVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNP---G 156 (184)
T ss_dssp --GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCH---H
T ss_pred --EEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCH---H
Confidence 5888888887767899999999887 1 123456788899999999976 999999997665 4
Q ss_pred HHHHHHHHHHH
Q 016486 332 SVAQASLSALK 342 (388)
Q Consensus 332 eVa~eIl~~L~ 342 (388)
+++++|+..++
T Consensus 157 e~~~~I~~~l~ 167 (184)
T 2iyv_A 157 AVVRHILSRLQ 167 (184)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHh
Confidence 88888876653
No 5
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.89 E-value=4.9e-23 Score=179.30 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=121.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe-EEEecCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA-VVATLGG 265 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~-VVStGGG 265 (388)
.+|+|+|++||||||+|+.||++||++|+|+|+++++..|.++.++|...|++.|+++|.+++..+....++ ||++|+|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g 87 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGG 87 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999888766677 9999888
Q ss_pred cccccccHHHHHhhcC-CcEEEEEcCccc------cc-----cC-H-HHHHHHHHHHhHhcccc-CcEEEEcCCCCcccH
Q 016486 266 QQGAAARADKWQHLYA-GFTVWLSQTEAM------DE-----NS-A-KEEARRHVKDGKLGYSN-ADVVVKLQGWDADHA 330 (388)
Q Consensus 266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~------D~-----~d-~-~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~ 330 (388)
.+.. ++ |+. +.+|||++|+++ .. +. . .+.+.+++.+|.+.|.. +|++|++++ ++
T Consensus 88 ---~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a~~~Id~~~-~~--- 156 (168)
T 1zuh_A 88 ---IVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARG-GL--- 156 (168)
T ss_dssp ---GGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTCSEEEEGGG-CH---
T ss_pred ---Eech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHCCEEEECCC-CH---
Confidence 4655 44 554 789999999987 11 00 1 46788899999999987 999999988 54
Q ss_pred HHHHHHHHHHH
Q 016486 331 KSVAQASLSAL 341 (388)
Q Consensus 331 eeVa~eIl~~L 341 (388)
++++++|...|
T Consensus 157 e~~~~~I~~~l 167 (168)
T 1zuh_A 157 NNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 48888887654
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.89 E-value=1.5e-22 Score=177.69 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=124.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
++|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+++|.++++.+....++||+||+|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~- 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG- 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT-
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC-
Confidence 3799999999999999999999999999999999999999999999998899999999999998888767899999988
Q ss_pred ccccccHHHHHhhcC-CcEEEEEcCccc-------c--cc--C--HHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486 267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------D--EN--S--AKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK 331 (388)
Q Consensus 267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D--~~--d--~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e 331 (388)
.+.. .+ |+. +.+|||++|++. . .. . ..+.+.+++.+|.++|.. ++++|++++.++ +
T Consensus 84 --~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~---e 154 (175)
T 1via_A 84 --FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNI---D 154 (175)
T ss_dssp --GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEECTTCCH---H
T ss_pred --Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEECCCCCH---H
Confidence 4655 43 544 899999999887 1 01 1 156789999999999986 999999998765 4
Q ss_pred HHHHHHHHHHH
Q 016486 332 SVAQASLSALK 342 (388)
Q Consensus 332 eVa~eIl~~L~ 342 (388)
+++++|+..++
T Consensus 155 ev~~~I~~~l~ 165 (175)
T 1via_A 155 ELLSEIKKVIK 165 (175)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999888774
No 7
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.88 E-value=1.3e-22 Score=176.38 Aligned_cols=151 Identities=24% Similarity=0.296 Sum_probs=126.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG 265 (388)
+..|+|+|++||||||+++.||..+|++++|+|.++++..+..+..+|+..|+..|+..|..++..+....++|+++|+|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~~ 83 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG 83 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCCe
Confidence 56899999999999999999999999999999999998888899999998899999999988888887767899999877
Q ss_pred cccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCH-HHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486 266 QQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSA-KEEARRHVKDGKLGYSN-ADVVVKLQGWDAD 328 (388)
Q Consensus 266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~-~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e 328 (388)
.+....+++.|+. +++|||++++++ . ..++ .+.+..++.+|.+.|.. ||++|++++.++
T Consensus 84 ---~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~~~~~~- 159 (173)
T 1kag_A 84 ---SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSA- 159 (173)
T ss_dssp ---GGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CH-
T ss_pred ---EEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEECCCCCH-
Confidence 5778888888876 899999999887 1 1233 67889999999999987 999999987665
Q ss_pred cHHHHHHHHHHHHH
Q 016486 329 HAKSVAQASLSALK 342 (388)
Q Consensus 329 ~~eeVa~eIl~~L~ 342 (388)
++++++|...++
T Consensus 160 --~~~~~~i~~~l~ 171 (173)
T 1kag_A 160 --KVVANQIIHMLE 171 (173)
T ss_dssp --HHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHH
Confidence 489998888764
No 8
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.87 E-value=7e-22 Score=170.96 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=125.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
+.|+|+|++||||||+++.|++.||++++|+|+++.+..|..+.+++...|+..|+.++.+++..+...+.+||++|+|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~- 79 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG- 79 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC-
Confidence 4799999999999999999999999999999999999999999999998999999999999998887666789998877
Q ss_pred ccccccHHHHHhhcC-CcEEEEEcCccc------c---cc---CHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHH
Q 016486 267 QGAAARADKWQHLYA-GFTVWLSQTEAM------D---EN---SAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSV 333 (388)
Q Consensus 267 ~gav~r~enr~~L~~-g~VVyLd~~~e~------D---~~---d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeV 333 (388)
..+.+.+++.|+. +.+|||++|+++ . .+ +..+.+++.|.+|.+.|..+|++| ++..++ +++
T Consensus 80 --~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~---~~~ 153 (168)
T 2pt5_A 80 --LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-KGEKPP---EEV 153 (168)
T ss_dssp --HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-ECSSCH---HHH
T ss_pred --EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-CCCCCH---HHH
Confidence 4777888888875 899999999987 1 11 224568888988888887799998 665554 589
Q ss_pred HHHHHHHHH
Q 016486 334 AQASLSALK 342 (388)
Q Consensus 334 a~eIl~~L~ 342 (388)
+++|...+.
T Consensus 154 ~~~i~~~l~ 162 (168)
T 2pt5_A 154 VKEILLSLE 162 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887775
No 9
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.86 E-value=9.3e-22 Score=170.57 Aligned_cols=149 Identities=22% Similarity=0.258 Sum_probs=125.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~ 266 (388)
+.|+|+|++||||||+|+.||+.||++++|+|.++++..|.++.+++...|+..|++++..++..+. ..++||++|||
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~- 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG- 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc-
Confidence 5799999999999999999999999999999999999889899999888899999999999998887 56789999988
Q ss_pred ccccccHHHHHhhcC-CcEEEEEcCccc-----c--cc----------CHHHHHHHHHHHhHhccccCcEEEEcCCCCcc
Q 016486 267 QGAAARADKWQHLYA-GFTVWLSQTEAM-----D--EN----------SAKEEARRHVKDGKLGYSNADVVVKLQGWDAD 328 (388)
Q Consensus 267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-----D--~~----------d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e 328 (388)
.++.+.+++.|+. +.+|||++|+++ . .. +..+.++..+.+|.+.|..+|++|++++.++
T Consensus 81 --~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~- 157 (173)
T 1e6c_A 81 --MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPP- 157 (173)
T ss_dssp --GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCH-
T ss_pred --EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCH-
Confidence 5788888888864 899999999876 1 11 1234577778888888877999999997665
Q ss_pred cHHHHHHHHHHHHH
Q 016486 329 HAKSVAQASLSALK 342 (388)
Q Consensus 329 ~~eeVa~eIl~~L~ 342 (388)
++++++|...++
T Consensus 158 --~~~~~~i~~~l~ 169 (173)
T 1e6c_A 158 --AAIVCELMQTMR 169 (173)
T ss_dssp --HHHHHHHHHHTT
T ss_pred --HHHHHHHHHHhc
Confidence 488888877664
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.77 E-value=4.8e-19 Score=161.95 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=103.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHH--HH----------------
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDS--VV---------------- 242 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~--FR---------------- 242 (388)
++...|.|.|++||||||||+.||++||++|+| +++++..+ |++. ++|...||.. |+
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQD 81 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHH
Confidence 356789999999999999999999999999999 66776543 4453 5677667764 34
Q ss_pred --HHHHHHHHHHh--cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------c----ccCHHHHHHHHHH
Q 016486 243 --NGECDVLESLS--SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------D----ENSAKEEARRHVK 307 (388)
Q Consensus 243 --e~E~~vL~~L~--~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D----~~d~~e~l~~l~~ 307 (388)
+.|.++++++. ..+++||...||. .++.. + ..+++|||++|++. + .+++.+.+.++.+
T Consensus 82 ~~~~~~~~i~~la~~~~~~~Vi~Gr~g~--~vl~~-~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~ 154 (201)
T 3fdi_A 82 IAIRQFNFIRKKANEEKESFVIVGRCAE--EILSD-N----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDK 154 (201)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEESTTHH--HHTTT-C----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEECCcc--hhcCC-C----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57889999998 7778888753331 34432 1 23789999999988 1 2345667888889
Q ss_pred HhHhcccc-----------CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 308 DGKLGYSN-----------ADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 308 eR~~~Y~~-----------AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+|.++|+. +|++|++++.+++ ++++.|+..++..
T Consensus 155 ~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~e---evv~~I~~~i~~~ 199 (201)
T 3fdi_A 155 MRKVYHNFYCESKWGDSRTYDICIKIGKVDVD---TATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHCSSCTTBGGGCSEEEEESSSCHH---HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCcccCCEEEECCCCCHH---HHHHHHHHHHHHh
Confidence 99988865 6999999998765 9999999888753
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.74 E-value=2.5e-18 Score=160.71 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=105.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccCcH------------------------
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEGSD------------------------ 239 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~Ge~------------------------ 239 (388)
+..|.|.|++||||||||+.||++||++|+|.|.+.+.. .|.+. +.|...+|.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCH-HHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 568999999999999999999999999999977654433 23333 234333332
Q ss_pred -------HHHHHHHHHHHHHhcCCCeEEE-ecCCccccccc--HHHHHhhcCCcEEEEEcCccc-------c----ccCH
Q 016486 240 -------SVVNGECDVLESLSSHVRAVVA-TLGGQQGAAAR--ADKWQHLYAGFTVWLSQTEAM-------D----ENSA 298 (388)
Q Consensus 240 -------~FRe~E~~vL~~L~~~~~~VVS-tGGG~~gav~r--~enr~~L~~g~VVyLd~~~e~-------D----~~d~ 298 (388)
.....+.+++++++..+++||+ +||| ++++ +++ ..+++|||++|++. + ..++
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg---~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a 165 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG---YVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERA 165 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCEEEESTTHH---HHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcc---hhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence 1224567888888876778887 7777 4653 222 23789999999988 1 2346
Q ss_pred HHHHHHHHHHhHhccc-----------cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 299 KEEARRHVKDGKLGYS-----------NADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 299 ~e~l~~l~~eR~~~Y~-----------~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
.+.++++.++|.++|+ .+|++|+++..+++ ++++.|+..++.
T Consensus 166 ~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~e---evv~~I~~~i~~ 218 (223)
T 3hdt_A 166 KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLE---ETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHH---HHHHHHHHHHHH
Confidence 7788999999999997 69999999998765 999999998874
No 12
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.69 E-value=9.6e-17 Score=139.83 Aligned_cols=145 Identities=16% Similarity=0.007 Sum_probs=95.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcC--------chhhhhhccCcHHHHHHHHHH---HHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ--------TIDSWMLAEGSDSVVNGECDV---LES 251 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~--------sI~eif~~~Ge~~FRe~E~~v---L~~ 251 (388)
.++.|+|+|+|||||||+|+.||++|+.+|++ +|.+++...++ ++.+++...+++.||..+..+ ++.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998885 89888765543 222334445678888887655 445
Q ss_pred HhcCCC-eEEEecCCcccccccHHHHHhhcC-C-cEEEEEcCccccccCHHHHHHHHHHHh------------Hhc--cc
Q 016486 252 LSSHVR-AVVATLGGQQGAAARADKWQHLYA-G-FTVWLSQTEAMDENSAKEEARRHVKDG------------KLG--YS 314 (388)
Q Consensus 252 L~~~~~-~VVStGGG~~gav~r~enr~~L~~-g-~VVyLd~~~e~D~~d~~e~l~~l~~eR------------~~~--Y~ 314 (388)
+...+. +||.+.-. ++...++.+++.++. + ++|||++|+++ +.++...| +.. |.
T Consensus 82 ~~~~g~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~~~~e~--------l~~R~~~r~~~~~~~~~~~~~~~~~~~ 152 (178)
T 1qhx_A 82 MARAGARIIIDDVFL-GGAAAQERWRSFVGDLDVLWVGVRCDGAV--------AEGRETARGDRVAGMAAKQAYVVHEGV 152 (178)
T ss_dssp HHHTTCEEEEEECCT-TTHHHHHHHHHHHTTCCEEEEEEECCHHH--------HHHHHHHTSSSCTTHHHHHTTGGGTTC
T ss_pred HHhcCCeEEEEeccc-cChHHHHHHHHHhcCCcEEEEEEECCHHH--------HHHHHHhhCCcccchhhhhchhhccCC
Confidence 544444 44444210 001224566777764 4 58899998765 12222211 112 44
Q ss_pred cCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 315 NADVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 315 ~AD~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
.+|++|++++.+++ +++++|+..+
T Consensus 153 ~~d~~idt~~~~~~---~~~~~I~~~l 176 (178)
T 1qhx_A 153 EYDVEVDTTHKESI---ECAWAIAAHV 176 (178)
T ss_dssp CCSEEEETTSSCHH---HHHHHHHTTC
T ss_pred CCcEEEECCCCCHH---HHHHHHHHHh
Confidence 58999999988754 8988887654
No 13
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.69 E-value=1.3e-16 Score=135.88 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=102.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc----------hhhhhhccCcHHHHHHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----------IDSWMLAEGSDSVVNGECDVLESLSSHV 256 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s----------I~eif~~~Ge~~FRe~E~~vL~~L~~~~ 256 (388)
+.|+|+|++||||||+++.| +.+|++++++|+++++..+.. ...++...|+..|+++..+.++. ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 57999999999999999999 999999999999988765321 23344446777887766555532 334
Q ss_pred CeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccc--------cc---cCHHHHHHHHHHH--h--H-hcccc
Q 016486 257 RAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM--------DE---NSAKEEARRHVKD--G--K-LGYSN 315 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~--------D~---~d~~e~l~~l~~e--R--~-~~Y~~ 315 (388)
..||.+| ...+.++..|.. ..+|||++|+++ +. ....+.+.+++.. + . .++..
T Consensus 79 ~~vi~dg------~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 152 (179)
T 3lw7_A 79 DLVVFDG------VRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAM 152 (179)
T ss_dssp SCEEEEC------CCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHT
T ss_pred CeEEEeC------CCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHh
Confidence 5777776 256666666653 279999999988 11 1224455555432 2 2 23345
Q ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 316 ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 316 AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
||++|++++ + +++++++|...++.++
T Consensus 153 ad~vId~~~-~---~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 153 ADYIITNDS-N---YEEFKRRCEEVTDRVL 178 (179)
T ss_dssp CSEEEECCS-C---HHHHHHHHHHHHHHHC
T ss_pred CCEEEECCC-C---HHHHHHHHHHHHHHHh
Confidence 999999876 4 4599999999887654
No 14
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.69 E-value=2.7e-16 Score=137.21 Aligned_cols=146 Identities=11% Similarity=0.040 Sum_probs=102.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH-----H-HhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE-----T-FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE-----~-~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~ 257 (388)
.++..|+|+|++||||||+++.|++.+|+.++|+|++.. + ..|..+.+ ..++..|+.+|..+...+.....
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKV 82 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHHCSE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHHHhcCCc
Confidence 457889999999999999999999999999999999842 2 24544432 23556777777644433333345
Q ss_pred eEEEecCCcccccccHHHHHhhcC-C---cEEEEEcCccc-------cc--cCHHHHHHHHHHHhHhc-ccc-CcEEEEc
Q 016486 258 AVVATLGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM-------DE--NSAKEEARRHVKDGKLG-YSN-ADVVVKL 322 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~-------D~--~d~~e~l~~l~~eR~~~-Y~~-AD~vV~~ 322 (388)
+||++|+ ..+.+++.++. + .+|||++|+++ .. ....+.+...+..+++. |.. +|++|++
T Consensus 83 ~vi~~~~------~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~ 156 (175)
T 1knq_A 83 SLIVCSA------LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDI 156 (175)
T ss_dssp EEEECCC------CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEEC
T ss_pred EEEEeCc------hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEeC
Confidence 7777763 35667777764 3 69999999887 11 11244555566655555 665 8999998
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~ 342 (388)
+ .+ +++++++|...+.
T Consensus 157 ~-~~---~~~~~~~i~~~l~ 172 (175)
T 1knq_A 157 D-QP---LEGVVASTIEVIK 172 (175)
T ss_dssp S-SC---HHHHHHHHHHHHH
T ss_pred C-CC---HHHHHHHHHHHHh
Confidence 7 44 4599999888775
No 15
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.65 E-value=1.2e-15 Score=137.02 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=108.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH------HhcCchhhhhhccCcHHHHHHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESLSSH 255 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~------~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~ 255 (388)
...++..|+|+|++||||||+++.|+..+|+.++|+|++... ..|..+.+ ......++.+|..++..+...
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~g 101 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSLAEWMDARADAG 101 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHHHHHHHHHHhcC
Confidence 334678999999999999999999999999999999998422 22332221 223445666776666655555
Q ss_pred CCeEEEecCCcccccccHHHHHhhcC----CcEEEEEcCccc-------c--ccCHHHHHHHHHHHhHhcccc-CcEEEE
Q 016486 256 VRAVVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM-------D--ENSAKEEARRHVKDGKLGYSN-ADVVVK 321 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~-------D--~~d~~e~l~~l~~eR~~~Y~~-AD~vV~ 321 (388)
..+||.++ ...+.+++.+.. ..+|||+++.++ . .....+.+..++++|++.|.. ++++|+
T Consensus 102 ~~viid~~------~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id 175 (200)
T 4eun_A 102 VSTIITCS------ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLD 175 (200)
T ss_dssp CCEEEEEC------CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEE
T ss_pred CCEEEEch------hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEE
Confidence 56777775 345777777764 479999999887 1 122346688889999999987 899999
Q ss_pred cCCCCcccHHHHHHHHHHHHHHh
Q 016486 322 LQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 322 ~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+++ + +++++++|...|+..
T Consensus 176 ~~~-~---~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 176 LRQ-P---PEQLIERALTWLDIA 194 (200)
T ss_dssp TTS-C---HHHHHHHHHHHHCCC
T ss_pred CCC-C---HHHHHHHHHHHHHhc
Confidence 875 4 459999998887643
No 16
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.64 E-value=1.7e-17 Score=145.74 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=96.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHH--HHHH---HHHHhcCCC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG--ECDV---LESLSSHVR 257 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~--E~~v---L~~L~~~~~ 257 (388)
.+++..|+|+|++||||||+++.||+.+|+.++|+|+++++. .++...|+..|+.+ +..+ +..+...+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE------QLYDGYDEEYDCPILDEDRVVDELDNQMREGG 81 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH------TCEEEEETTTTEEEECHHHHHHHHHHHHHHCC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc------chhhhhhhhhcCccCChHHHHHHHHHHHhcCC
Confidence 346788999999999999999999999999999999998876 23333344433221 1112 222222234
Q ss_pred eEEEecCCcccccccHHHHHhhc---CCcEEEEEcCccc-------cc-c-------CHHHHHHHHHHHhHhccccCcEE
Q 016486 258 AVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAM-------DE-N-------SAKEEARRHVKDGKLGYSNADVV 319 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~---~g~VVyLd~~~e~-------D~-~-------d~~e~l~~l~~eR~~~Y~~AD~v 319 (388)
.||...+. ..+. .+.+|||++++++ .+ . ...+.+..++++|.+.|. +|++
T Consensus 82 ~vv~~~~~-----------~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~ 149 (180)
T 3iij_A 82 VIVDYHGC-----------DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIV 149 (180)
T ss_dssp EEEECSCC-----------TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGE
T ss_pred EEEEechh-----------hhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeE
Confidence 55532221 2222 4789999999988 11 1 112456778999999998 6889
Q ss_pred EEcCCCCcccHHHH---HHHHHHHHHHhhh
Q 016486 320 VKLQGWDADHAKSV---AQASLSALKQLIQ 346 (388)
Q Consensus 320 V~~d~~s~e~~eeV---a~eIl~~L~~~~~ 346 (388)
|++++.+++ ++ +.+|+..|+++..
T Consensus 150 i~~~~~~~~---ev~~~v~~i~~~l~~~~~ 176 (180)
T 3iij_A 150 HQLPSNKPE---ELENNVDQILKWIEQWIK 176 (180)
T ss_dssp EEEECSSHH---HHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCHH---HHHHHHHHHHHHHHHHHH
Confidence 999987754 77 7777777776543
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.63 E-value=1.5e-15 Score=133.72 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=99.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHH----hc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL----SS 254 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L----~~ 254 (388)
+++.|+|+|++||||||+|+.||+.||++++|+|+++++. .|..+.+++. .|+..|++....++... ..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 5678999999999999999999999999999999998874 3445666665 36655555444443332 22
Q ss_pred CCCeEEEecCCcccccccHHHHHh----hc-CCcEEEEEcCccc--------cc------cC---HHHHHHHHHHHhHhc
Q 016486 255 HVRAVVATLGGQQGAAARADKWQH----LY-AGFTVWLSQTEAM--------DE------NS---AKEEARRHVKDGKLG 312 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~~----L~-~g~VVyLd~~~e~--------D~------~d---~~e~l~~l~~eR~~~ 312 (388)
.+..||..|- ....+.++. +. .+.+|||++|+++ +. .. ..+++...+.++.+.
T Consensus 87 ~~~~vi~d~~-----~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (196)
T 2c95_A 87 TSKGFLIDGY-----PREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPV 161 (196)
T ss_dssp TCSCEEEESC-----CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHH
T ss_pred cCCcEEEeCC-----CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455665552 222222222 23 3789999999987 11 11 133456666677664
Q ss_pred ---cccCcEE--EEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 313 ---YSNADVV--VKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 313 ---Y~~AD~v--V~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
|..++.+ |+.+ .+ +++++++|...++.++
T Consensus 162 ~~~~~~~~~~~~Id~~-~~---~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 162 IAFYEKRGIVRKVNAE-GS---VDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHHHHTCEEEEECC-SC---HHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcEEEEECC-CC---HHHHHHHHHHHHHHhc
Confidence 5556643 5543 33 5699999999887653
No 18
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.63 E-value=4.1e-17 Score=145.08 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=88.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh-cCCcceechhHHHHHhcCchhhhhhccCcHHHH--HHHHHHHHHH---h-c
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG-LGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESL---S-S 254 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~-LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FR--e~E~~vL~~L---~-~ 254 (388)
...+++.|+|+|+|||||||+|+.||+. +|++|+|+|+++++.. +.+.+.+..+..|. ..|..+++.+ . .
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~ 82 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH---FYTEYDTELDTHIIEEKDEDRLLDFMEPIMVS 82 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT---CSCC------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh---hhhhHHHHhhhcccCCCCHHHHHHHHHHHHhc
Confidence 3446789999999999999999999999 8999999999998742 11111111111121 2232333322 2 2
Q ss_pred CCCeEEEecCCcccccccHHHHHhhc---CCcEEEEEcCccc-------cccC---HHH-----HHHHHHHHhHhccccC
Q 016486 255 HVRAVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAM-------DENS---AKE-----EARRHVKDGKLGYSNA 316 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~~L~---~g~VVyLd~~~e~-------D~~d---~~e-----~l~~l~~eR~~~Y~~A 316 (388)
.+..|+ ++- ++..+. .+.+|||++|.++ ...+ ..+ .+..++.+|.+.|+ +
T Consensus 83 ~g~~vi-~~~----------~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~ 150 (184)
T 1y63_A 83 RGNHVV-DYH----------SSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-D 150 (184)
T ss_dssp SSEEEE-ECS----------CCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-G
T ss_pred cCCEEE-eCc----------hHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-c
Confidence 222222 221 222332 3689999999987 1111 111 14455788999998 6
Q ss_pred cEEEEcCCCCcccHHHH---HHHHHHHHHHhh
Q 016486 317 DVVVKLQGWDADHAKSV---AQASLSALKQLI 345 (388)
Q Consensus 317 D~vV~~d~~s~e~~eeV---a~eIl~~L~~~~ 345 (388)
|++|++++.++ +++ +++|+..++.+.
T Consensus 151 ~~vi~~n~~~~---~~~~~~v~~i~~~l~~~~ 179 (184)
T 1y63_A 151 DIVLVRENDTL---EQMAATVEEIRERVEVLK 179 (184)
T ss_dssp GGEEEEECSSH---HHHHHHHHHHHHHHHHHC
T ss_pred CcEEECCCCCH---HHHHHHHHHHHHHHHHHH
Confidence 88898776665 477 666666665544
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.60 E-value=3.1e-15 Score=130.49 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=97.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHHHhc--CCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSS--HVR 257 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~~--~~~ 257 (388)
++.|+|+|++||||||+++.|++.||++++|+|+++.+.. +..+.++|.. |+..+++.+..++..... .+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999999999999887763 2345556653 555555555556555432 234
Q ss_pred eEEEecCCcccccccHHHHHhh----c----CCcEEEEEcCccc--------cc-----cC----HHHHHHHHHHHhHh-
Q 016486 258 AVVATLGGQQGAAARADKWQHL----Y----AGFTVWLSQTEAM--------DE-----NS----AKEEARRHVKDGKL- 311 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L----~----~g~VVyLd~~~e~--------D~-----~d----~~e~l~~l~~eR~~- 311 (388)
.||..|- ....+.++.+ . .+++|||++|+++ +. .+ ..++++..+++|.+
T Consensus 85 ~vi~d~~-----~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~ 159 (194)
T 1qf9_A 85 NFLVDGF-----PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLV 159 (194)
T ss_dssp CEEEETC-----CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHH
T ss_pred CEEEeCc-----CCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHH
Confidence 5665552 3444444333 3 2579999999987 11 11 12334444555555
Q ss_pred --ccccCc--EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 312 --GYSNAD--VVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 312 --~Y~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
.|..+| ++|+++ .+ +++++++|...++.
T Consensus 160 ~~~~~~~~~~~~id~~-~~---~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 160 IDHYNKFDKVKIIPAN-RD---VNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHTTCEEEEECS-SC---HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEECC-CC---HHHHHHHHHHHHHH
Confidence 455577 567665 33 55999999888765
No 20
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.60 E-value=1e-14 Score=125.28 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=97.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe----
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT---- 262 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt---- 262 (388)
+.|+|+|++||||||+++.||++||++|+|.|.++.... .+..+| . ..+.+.. +..||+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--~~~~~~--------~-----~~~~l~~-~~~vi~dr~~~ 65 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--GNEKLF--------E-----HFNKLAD-EDNVIIDRFVY 65 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--CHHHHH--------H-----HHHHHTT-CCSEEEESCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--HHHHHH--------H-----HHHHHHh-CCCeEEeeeec
Confidence 469999999999999999999999999999999876543 122222 1 1122322 2334432
Q ss_pred ------cCCcccccccHHHHHhhc-----CCcEEEEEcCccc----------c--ccCHHHHHHHHHHHhHhccccCcEE
Q 016486 263 ------LGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM----------D--ENSAKEEARRHVKDGKLGYSNADVV 319 (388)
Q Consensus 263 ------GGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~----------D--~~d~~e~l~~l~~eR~~~Y~~AD~v 319 (388)
++|.........++..+. .+.+|||++|+++ + ..+..+.+.+.|++|.+.|..++++
T Consensus 66 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (173)
T 3kb2_A 66 SNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYS 145 (173)
T ss_dssp HHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred chHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEEE
Confidence 000000134555555443 3689999999987 1 1224567888899999999888899
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 320 VKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 320 V~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
|++++.++ ++++++|...++....
T Consensus 146 id~~~~~~---~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 146 WDTGQWSS---DEIAKDIIFLVELEHH 169 (173)
T ss_dssp EETTTSCH---HHHHHHHHHHHHHGGG
T ss_pred EECCCCCH---HHHHHHHHHHHhCCCc
Confidence 99887665 4999999999987654
No 21
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.59 E-value=6.2e-15 Score=131.84 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=97.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhcc-CcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAE-GSDSVVNGECDVLESLSSHVRAVVAT 262 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~-Ge~~FRe~E~~vL~~L~~~~~~VVSt 262 (388)
.+.|+|+|++||||||+++.|++.+|+.++|+|.++... .++.....+... .+..++.++. .+.....+||.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~----~~~~~~~vivd~ 93 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE----RLASREPVVVSC 93 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH----HHTSSSCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH----HHhcCCCEEEEC
Confidence 468999999999999999999999999999999985321 111111222221 2233333222 123333466665
Q ss_pred cCCcccccccHHHHHhhcC-----CcEEEEEcCccc--------c-ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486 263 LGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM--------D-ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA 327 (388)
Q Consensus 263 GGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~--------D-~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~ 327 (388)
++ .....++.+.. ..+|||++|.++ + .....+.+.++++.+++.|.. ++++|+++ .+
T Consensus 94 ~~------~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~~- 165 (202)
T 3t61_A 94 SA------LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVA-QP- 165 (202)
T ss_dssp CC------CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEESS-SC-
T ss_pred CC------CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeCC-CC-
Confidence 53 34555665553 479999999887 1 123356677788888777765 88999988 44
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 016486 328 DHAKSVAQASLSALKQLI 345 (388)
Q Consensus 328 e~~eeVa~eIl~~L~~~~ 345 (388)
+++++++|+..|+...
T Consensus 166 --~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 166 --LAEIVREALAGLARLA 181 (202)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhh
Confidence 5699999999987654
No 22
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.59 E-value=3.1e-15 Score=131.09 Aligned_cols=145 Identities=16% Similarity=0.062 Sum_probs=95.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA 258 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~ 258 (388)
+|+.|+|+|++||||||+++.||+.||++++|+|+++++. .|..+.++|.. |+..+++.+..++......+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~-- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAER-- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCSE--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcCC--
Confidence 5678999999999999999999999999999999998875 34456677764 77777777777776655433
Q ss_pred EEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc--------c---c--cCHHHH----HHHHHHHhHh-
Q 016486 259 VVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM--------D---E--NSAKEE----ARRHVKDGKL- 311 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~--------D---~--~d~~e~----l~~l~~eR~~- 311 (388)
||..|- ......+. .+. .+.+|||++|+++ . + .+..+. +...+.++.+
T Consensus 80 ~i~dg~-----~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l 154 (186)
T 3cm0_A 80 VIFDGF-----PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPL 154 (186)
T ss_dssp EEEESC-----CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 555542 23322222 233 2579999999877 1 1 122222 3333444444
Q ss_pred --ccccC--cEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 312 --GYSNA--DVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 312 --~Y~~A--D~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
.|..+ +++|+.+ .+ +++++++|.+.+
T Consensus 155 ~~~~~~~~~~~~id~~-~~---~~~v~~~i~~~l 184 (186)
T 3cm0_A 155 VGYYEARGVLKRVDGL-GT---PDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHTTCEEEEECC-SC---HHHHHHHHHHHH
T ss_pred HHHHHhcCcEEEEECC-CC---HHHHHHHHHHHh
Confidence 45545 3556654 33 568998888765
No 23
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.57 E-value=7.7e-15 Score=128.20 Aligned_cols=149 Identities=16% Similarity=0.244 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc-------CchhhhhhccCcHHHHHHHHHHHHH-----H
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK-------QTIDSWMLAEGSDSVVNGECDVLES-----L 252 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g-------~sI~eif~~~Ge~~FRe~E~~vL~~-----L 252 (388)
+++.|+|+|++||||||+++.||+.+|++++|.|+++++... ..+.+++. .|+..+++.+..++.. +
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence 567899999999999999999999999999999999877642 22444454 4654444443333321 1
Q ss_pred h--cCCCeEEEecCCcccccccHHHHHh----hc----CCcEEEEEcCccc--------c---c--cC----HHHHHHHH
Q 016486 253 S--SHVRAVVATLGGQQGAAARADKWQH----LY----AGFTVWLSQTEAM--------D---E--NS----AKEEARRH 305 (388)
Q Consensus 253 ~--~~~~~VVStGGG~~gav~r~enr~~----L~----~g~VVyLd~~~e~--------D---~--~d----~~e~l~~l 305 (388)
. ..+..||..| .....+.++. +. .+.+|||++|+++ + + .+ ....+...
T Consensus 81 ~~~~~~~~vi~dg-----~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~ 155 (196)
T 1tev_A 81 AANAQKNKFLIDG-----FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTY 155 (196)
T ss_dssp HHCTTCCEEEEES-----CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHH
T ss_pred ccccCCCeEEEeC-----CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence 1 1244566544 2444444332 22 2579999999887 1 0 11 12234444
Q ss_pred HHHhHh---cccc-CcE-EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 306 VKDGKL---GYSN-ADV-VVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 306 ~~eR~~---~Y~~-AD~-vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+..+.+ +|.. +++ +|+++ .+ +++++++|.+.++.
T Consensus 156 ~~~~~~~~~~y~~~~~~~~id~~-~~---~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 156 LQSTKPIIDLYEEMGKVKKIDAS-KS---VDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETT-SC---HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhcCCEEEEECC-CC---HHHHHHHHHHHHHh
Confidence 455555 5765 675 67776 44 45999999888764
No 24
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.57 E-value=1.7e-14 Score=131.11 Aligned_cols=151 Identities=12% Similarity=0.066 Sum_probs=98.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcH----HHHH-HHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSD----SVVN-GECDVLESLS 253 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~----~FRe-~E~~vL~~L~ 253 (388)
+++.|+|+|++||||||+|+.||+.||+.++|+|+++++. .|+.+.+++.. |+. .|.. ++..+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence 3578999999999999999999999999999999998873 44556666653 332 2332 3333332222
Q ss_pred cCCCeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccc-------cc--------------------------
Q 016486 254 SHVRAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM-------DE-------------------------- 295 (388)
Q Consensus 254 ~~~~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~-------D~-------------------------- 295 (388)
....+|| .|. ....+.+..|.. +++|||++++++ ..
T Consensus 83 ~~~~~vi-dg~-----~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~ 156 (222)
T 1zak_A 83 QENGWLL-DGY-----PRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLT 156 (222)
T ss_dssp HHTCEEE-ESC-----CCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCB
T ss_pred cCCcEEE-ECC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccc
Confidence 2345666 652 333344444442 689999999876 00
Q ss_pred ---cCHHH----HHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 296 ---NSAKE----EARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 296 ---~d~~e----~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
.+..+ ++...+.++.+ .|....++|+.+ .+ +++|+++|.+.|...+.
T Consensus 157 ~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~-~~---~~ev~~~I~~~l~~~l~ 213 (222)
T 1zak_A 157 QRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGD-AT---VDAVFAKIDELLGSILE 213 (222)
T ss_dssp CCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECS-SC---HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECC-CC---HHHHHHHHHHHHHhhcc
Confidence 01122 33456666766 455455667663 33 56999999999987664
No 25
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.57 E-value=2e-15 Score=131.74 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcce-echhHHHHHhcCchhhhhhccCcHHHH------HHHHHHHHHHhc-CC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVV------NGECDVLESLSS-HV 256 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-D~D~lIE~~~g~sI~eif~~~Ge~~FR------e~E~~vL~~L~~-~~ 256 (388)
+++.|+|+|++||||||+|+.||+.||++++ |.|. .|..+.++|. .|+..|+ +...+++..+.. .+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g 77 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----MGQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAA 77 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----HHHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----hHHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCC
Confidence 5678999999999999999999999999999 6432 2334555555 4444343 222344444443 35
Q ss_pred CeEEEecCCcccccccHHHHHhhcC-CcE---EEEEcCccc-------cc--cCHHHHHHHHHHHhHhccccCcEEEEcC
Q 016486 257 RAVVATLGGQQGAAARADKWQHLYA-GFT---VWLSQTEAM-------DE--NSAKEEARRHVKDGKLGYSNADVVVKLQ 323 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~L~~-g~V---VyLd~~~e~-------D~--~d~~e~l~~l~~eR~~~Y~~AD~vV~~d 323 (388)
..||..+.-. ....+.+.++.++. +.+ |||++|+++ .. +...+.+.++++++.+. ..++ +|+++
T Consensus 78 ~~vi~d~~~~-~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~~~~-~Id~~ 154 (183)
T 2vli_A 78 GPLIVPVSIS-DTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-QFQT-HIDTA 154 (183)
T ss_dssp SCEEEEECCC-CHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-GGCS-EEECT
T ss_pred CcEEEeeecc-CHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-ccce-EeeCC
Confidence 5666554210 00123345556653 544 999999887 11 11246677777777766 4466 89988
Q ss_pred CCCcccHHHHHHHHHHHHHHhhh
Q 016486 324 GWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 324 ~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
+.++ ++++++|.+.++..+.
T Consensus 155 ~~~~---~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 155 GLGT---QQVAEQIAAQVGLTLA 174 (183)
T ss_dssp TCCH---HHHHHHHHHHHTCCCC
T ss_pred CCCH---HHHHHHHHHHHHHhcC
Confidence 7665 4999999988865443
No 26
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=127.37 Aligned_cols=150 Identities=14% Similarity=0.120 Sum_probs=95.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHH----Hhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES----LSS 254 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~----L~~ 254 (388)
+++.|+|+|++||||||+++.||+.||++++|+|+++.+.. |..+.++|.. |+..+++....++.. ...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMER-GDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999987765 3455666653 544444333333322 222
Q ss_pred CCCeEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc--------cc--cC---HHHHH----HHHHHHhHh-
Q 016486 255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM--------DE--NS---AKEEA----RRHVKDGKL- 311 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~--------D~--~d---~~e~l----~~l~~eR~~- 311 (388)
.+..||..| .....+.+..+. .+++|||++|+++ +. .. ..+.+ ...+.++.+
T Consensus 90 ~~~~vi~dg-----~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (199)
T 2bwj_A 90 DTRGFLIDG-----YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPV 164 (199)
T ss_dssp SCSCEEEET-----CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeC-----CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345666665 244444433332 3689999999887 11 01 11223 234455554
Q ss_pred --ccccCc--EEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 312 --GYSNAD--VVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 312 --~Y~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+|..++ ++|+.+ .+ +++++++|.+.++.+
T Consensus 165 ~~~~~~~~~~~~id~~-~~---~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 165 IAYYETKTQLHKINAE-GT---PEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHSEEEEEETT-SC---HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEECC-CC---HHHHHHHHHHHHHHh
Confidence 566644 556643 33 569999999888764
No 27
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.57 E-value=8.4e-15 Score=133.33 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc---C
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS---H 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~---~ 255 (388)
+++.|+|+|++||||||+|+.||+.||++++++|+++++. .|+.+.+++.. |+..+++.+.+++..... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999876 35567777765 666677777666655332 1
Q ss_pred CCeEEEecCCcccccccHHHHH-hhc-----CCcEEEEEcCccc
Q 016486 256 VRAVVATLGGQQGAAARADKWQ-HLY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~-~L~-----~g~VVyLd~~~e~ 293 (388)
+..||..|-.. .....+.+. .+. ...+|||++++++
T Consensus 83 ~~~~i~dg~~~--~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~ 124 (217)
T 3be4_A 83 VNGFVLDGFPR--TIPQAEGLAKILSEIGDSLTSVIYFEIDDSE 124 (217)
T ss_dssp TTCEEEESCCC--SHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred CCCEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 34455554221 011122222 232 1479999999887
No 28
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.55 E-value=7.1e-16 Score=139.10 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=94.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hc--Cchhhh-------hh----------ccCcH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AK--QTIDSW-------ML----------AEGSD 239 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g--~sI~ei-------f~----------~~Ge~ 239 (388)
++..|+|+|++||||||+|+.||+.||++++|+|.+++.. .| ..+.++ |. ..|+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 4678999999999999999999999999999999998753 22 244443 31 34654
Q ss_pred HHHHHHHHHH---------------------HHHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCcccc---
Q 016486 240 SVVNGECDVL---------------------ESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAMD--- 294 (388)
Q Consensus 240 ~FRe~E~~vL---------------------~~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~D--- 294 (388)
.|++++...+ ..+...+.+|+ .|.. . .+..+.. +++|||++|+++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi-~g~~----~----~~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVM-DGRD----I----GTVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEE-EESS----C----CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEE-EcCC----c----cceecCCCCEEEEEECCHHHHHHH
Confidence 4433221111 11222222333 3321 0 0123333 7899999999870
Q ss_pred --------cc-CHHHHHHHHHHHhH---------hccccCc-EEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 295 --------EN-SAKEEARRHVKDGK---------LGYSNAD-VVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 295 --------~~-d~~e~l~~l~~eR~---------~~Y~~AD-~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
+. ...+.+.+++.+|. ++|..+| ++|++++.++ ++++++|.+.++
T Consensus 153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~---ee~~~~I~~~l~ 216 (219)
T 2h92_A 153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSI---EEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCH---HHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCH---HHHHHHHHHHHh
Confidence 11 13566778887775 7888777 9999998765 499999888775
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.55 E-value=2.5e-14 Score=125.55 Aligned_cols=151 Identities=12% Similarity=0.035 Sum_probs=90.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHH-------HHHHhcCCC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV-------LESLSSHVR 257 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~v-------L~~L~~~~~ 257 (388)
+++.|+|+|++||||||+++.|++.||++++++|.+.+...+. +...++++++.++... +..+...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 78 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG-----LGWSDREWSRRVGATAIMMLYHTAATILQSGQ 78 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH-----HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh-----cCccchHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999998776542 1222344555444221 222233345
Q ss_pred eEEEecCCcccccccHHHHHhhcC-C----cEEEEEcCccc--------cc--cCH--------HH--HHHHHHHHhHhc
Q 016486 258 AVVATLGGQQGAAARADKWQHLYA-G----FTVWLSQTEAM--------DE--NSA--------KE--EARRHVKDGKLG 312 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~~-g----~VVyLd~~~e~--------D~--~d~--------~e--~l~~l~~eR~~~ 312 (388)
.||..+... .......+..|.. + .+|||++|+++ .. ..+ .+ .+.++++.+.++
T Consensus 79 ~vi~d~~~~--~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
T 2rhm_A 79 SLIMESNFR--VDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPL 156 (193)
T ss_dssp CEEEEECCC--HHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCC
T ss_pred eEEEecCCC--CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCc
Confidence 566555320 0000011222432 2 69999999887 00 010 11 244555556677
Q ss_pred cc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 313 YS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 313 Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
|. .++++|++++..+ +++++|++.|...+.
T Consensus 157 ~~~~~~~~Idt~~~~~----~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 157 PLGGPLLTVDTTFPEQ----IDMNAIVQWVRQHLQ 187 (193)
T ss_dssp CCCSCEEEEECSSGGG----CCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCcc----cCHHHHHHHHHHHHH
Confidence 76 4889999998755 344555555554443
No 30
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.53 E-value=1.2e-14 Score=131.87 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=96.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc----
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS---- 254 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~---- 254 (388)
+++.|+|+|++||||||+|+.||+.||++++++|+++++. .|+.+.+++.. |+..+++.+..++.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ-GGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999999875 34456666653 655566666555554332
Q ss_pred CCCeEEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc-------cc-----------------------
Q 016486 255 HVRAVVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM-------DE----------------------- 295 (388)
Q Consensus 255 ~~~~VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~-------D~----------------------- 295 (388)
.+..||..|- ........ .+. ...+|||++++++ ..
T Consensus 82 ~~~~~i~dg~-----~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~ 156 (220)
T 1aky_A 82 CKNGFILDGF-----PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDD 156 (220)
T ss_dssp GGSCEEEESC-----CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred cCCCeEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccc
Confidence 1234444441 22222221 222 1479999999887 00
Q ss_pred ----------cC----HHHHHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 296 ----------NS----AKEEARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 296 ----------~d----~~e~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
++ ..+++...++++.+ +|..++.++.+++..+ +++|+++|...|.
T Consensus 157 ~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~--~~~v~~~i~~~l~ 218 (220)
T 1aky_A 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQP--PATVWADILNKLG 218 (220)
T ss_dssp TTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSC--HHHHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCC--HHHHHHHHHHHHh
Confidence 01 12345555566666 6765444455554322 5699999888775
No 31
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.52 E-value=5.5e-14 Score=125.60 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=94.3
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS 254 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~ 254 (388)
....+++.|+|+|++||||||+++.||+.||++++|+|+++++. .|..+.+++. .|+..|++.+..++.....
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 93 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLN 93 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHh
Confidence 34556789999999999999999999999999999999998773 2234555554 3665666666666655332
Q ss_pred ---CCCeEEEecCCcccccccHHHH-Hhhc-----CCcEEEEEcCccc--------cc-cCHHHH----HHHHHHHhHh-
Q 016486 255 ---HVRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAM--------DE-NSAKEE----ARRHVKDGKL- 311 (388)
Q Consensus 255 ---~~~~VVStGGG~~gav~r~enr-~~L~-----~g~VVyLd~~~e~--------D~-~d~~e~----l~~l~~eR~~- 311 (388)
....||..|... .....+.+ ..+. .+.+|||++|+++ +. .+..+. +...+.++.+
T Consensus 94 ~~~~~~~vIldg~~~--~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 94 NPDAANGFILDGYPR--SVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPL 171 (201)
T ss_dssp SGGGTTCEEEESCCC--SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTH
T ss_pred cccCCCeEEEECCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 123345444210 01111111 2232 2579999999887 11 122232 3333444443
Q ss_pred --ccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 312 --GYSNADVVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 312 --~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
.|..++++|+.+ .+ +++++++|.+.|+
T Consensus 172 ~~~~~~~~~~Id~~-~~---~eev~~~I~~~l~ 200 (201)
T 2cdn_A 172 LEYYRDQLKTVDAV-GT---MDEVFARALRALG 200 (201)
T ss_dssp HHHTTTTEEEEECC-SC---HHHHHHHHHHHTT
T ss_pred HHHhcCcEEEEeCC-CC---HHHHHHHHHHHHc
Confidence 344466777765 33 4589888877653
No 32
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.50 E-value=4.4e-14 Score=128.99 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=73.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHH-HHHhc--C
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS--H 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL-~~L~~--~ 255 (388)
+++.|+|+|++||||||+++.||+.||++++|+|+++.... |..+.+++.. |+..+++.+..++ ..+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 45789999999999999999999999999999999988754 4456666654 6655665554433 34432 3
Q ss_pred CCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486 256 VRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM 293 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~ 293 (388)
..+|+...++ .+....++..+. .+.+|||+++.++
T Consensus 85 ~~~vid~~~~---~~~~~~~l~~~~~~~~vi~L~~~~~~ 120 (227)
T 1zd8_A 85 YSWLLDGFPR---TLPQAEALDRAYQIDTVINLNVPFEV 120 (227)
T ss_dssp SCEEEESCCC---SHHHHHHHHTTSCCCEEEEEECCHHH
T ss_pred CCEEEeCCCC---CHHHHHHHHHhcCCCEEEEEECCHHH
Confidence 3455554444 233333444433 3889999999877
No 33
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.50 E-value=5.5e-14 Score=132.09 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=97.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh---cCCcce--echhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG---LGYTPL--STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~---LG~~fI--D~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
++.|+|+|++||||||+|+.|++. +|++++ |.|.+.+...+ |...++..|+..+..+++.+... ..||
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~~e~~~~~~~~~~i~~~l~~-~~vI 76 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEKYEEFIKKSTYRLIDSALKN-YWVI 76 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhhC-CEEE
Confidence 568999999999999999999998 899998 99988755443 45567888888887777766655 5555
Q ss_pred EecCCcccccccHHHHHhhc--------CCcEEEEEcCccc-------cc-cCHHHHHHHHHH---HhHhcc--ccCcEE
Q 016486 261 ATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAM-------DE-NSAKEEARRHVK---DGKLGY--SNADVV 319 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L~--------~g~VVyLd~~~e~-------D~-~d~~e~l~~l~~---eR~~~Y--~~AD~v 319 (388)
..+. ......+..+. ...+|||++|+++ .+ ....+.+.++++ ++.+.| ..++++
T Consensus 77 iD~~-----~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 151 (260)
T 3a4m_A 77 VDDT-----NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLI 151 (260)
T ss_dssp ECSC-----CCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEE
T ss_pred EeCC-----cccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEE
Confidence 5542 34444554433 1579999999887 01 112344444433 334455 347899
Q ss_pred EEcCC-CCcccHHHHHHHHHHHHH
Q 016486 320 VKLQG-WDADHAKSVAQASLSALK 342 (388)
Q Consensus 320 V~~d~-~s~e~~eeVa~eIl~~L~ 342 (388)
|++++ .+ +++|+++|...+.
T Consensus 152 Id~~~~~~---~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 152 IDTTKDID---FNEIAKKLIEKSK 172 (260)
T ss_dssp EETTSCCC---HHHHHHHHHHHHT
T ss_pred EeCCCCCC---HHHHHHHHHhccc
Confidence 99887 33 4588888777654
No 34
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.50 E-value=5.6e-14 Score=127.07 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=99.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHHHH-------------------
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV------------------- 242 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~FR------------------- 242 (388)
++..|+|+|++||||||+++.|++ +|++++|+|.++++.. +..+.++++..|+..|+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 356899999999999999999999 9999999999988754 22445555444433321
Q ss_pred ---HHHHHHH--------HHHhc-CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCcccc-------ccCHHHHHH
Q 016486 243 ---NGECDVL--------ESLSS-HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMD-------ENSAKEEAR 303 (388)
Q Consensus 243 ---e~E~~vL--------~~L~~-~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D-------~~d~~e~l~ 303 (388)
.++.-+. ..+.. ...+||..+ . .+...+|.. ..+.+|||++|+++- .....+.+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~----~l~~~~~~~-~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~ 155 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-P----LLVENSLYK-KANRVLVVDVSPETQLKRTMQRDDVTREHVE 155 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-T----TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-e----eeeccCccc-cCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 0111010 11111 233444333 2 222222211 237899999998870 111245667
Q ss_pred HHHHHhHhcc---ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCccceeecccc
Q 016486 304 RHVKDGKLGY---SNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCR 364 (388)
Q Consensus 304 ~l~~eR~~~Y---~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l~g~k~lyi~~g~~ 364 (388)
+++..|.+.| ..||++|++++ +++ +++++|.+.++.++..... ..+.|-+.|..
T Consensus 156 ~~~~~~~~~~~~~~~ad~vId~~~-~~~---~~~~~I~~~l~~~~~~~~~---~~~~~~~~~~~ 212 (218)
T 1vht_A 156 QILAAQATREARLAVADDVIDNNG-APD---AIASDVARLHAHYLQLASQ---FVSQEKPEGGS 212 (218)
T ss_dssp HHHHHSCCHHHHHHHCSEEEECSS-CTT---SHHHHHHHHHHHHHHHHHH---TTTCCSCC---
T ss_pred HHHHhcCChHHHHHhCCEEEECCC-CHH---HHHHHHHHHHHHHHHHHHH---HHhccCCCCCC
Confidence 7777766554 34999999987 555 8888888888776542222 23555555543
No 35
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.50 E-value=1.1e-13 Score=123.96 Aligned_cols=147 Identities=11% Similarity=0.062 Sum_probs=92.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc---CchhhhhhccCcHHHHH--------------------
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSVVN-------------------- 243 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g---~sI~eif~~~Ge~~FRe-------------------- 243 (388)
..|.|+|++||||||+++.||+ +|++++|+|++..+... ..+.++++..|+..|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 4699999999999999999998 99999999999876432 24555666556544331
Q ss_pred --HHH--------HHHHHHhc-CCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc-------cccCHHHHHHH
Q 016486 244 --GEC--------DVLESLSS-HVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM-------DENSAKEEARR 304 (388)
Q Consensus 244 --~E~--------~vL~~L~~-~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~-------D~~d~~e~l~~ 304 (388)
++. .+.+.+.. .+..||..+- .+.+.. +.. .+.+|||++|+++ ......+.+.+
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~-----~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~ 154 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP-----LLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQR 154 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT-----TTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----CHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEec-----hhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 111 01111211 2334554331 222221 222 2789999999987 11123456677
Q ss_pred HHH---HhHhccccCcEEEEcCCCCcccHH----HHHHHHHHHHHHhh
Q 016486 305 HVK---DGKLGYSNADVVVKLQGWDADHAK----SVAQASLSALKQLI 345 (388)
Q Consensus 305 l~~---eR~~~Y~~AD~vV~~d~~s~e~~e----eVa~eIl~~L~~~~ 345 (388)
+++ .+.+.|..||++|++++ + ++ +++++|...++.+.
T Consensus 155 r~~~q~~~~~~~~~ad~vIdn~~-~---~~~~~~~~~~~i~~~~~~~~ 198 (206)
T 1jjv_A 155 IMNSQVSQQERLKWADDVINNDA-E---LAQNLPHLQQKVLELHQFYL 198 (206)
T ss_dssp HHHHSCCHHHHHHHCSEEEECCS-C---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHhCCEEEECCC-C---ccccHHHHHHHHHHHHHHHH
Confidence 777 35677878999999987 4 56 78888877776554
No 36
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.49 E-value=4.2e-13 Score=117.00 Aligned_cols=150 Identities=10% Similarity=0.027 Sum_probs=89.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHh---cC--chhhhhhccCcHHHHHHHHHH---HHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDV---LES 251 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~---g~--sI~eif~~~Ge~~FRe~E~~v---L~~ 251 (388)
+++.|+|+|++||||||+++.||+.|| ++++++|+++.+.. |. +..+++. ...+.++.++..+ +..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 80 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE 80 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 99999998876543 32 4444433 2344555555433 333
Q ss_pred HhcCCCeEEEecCCcccccccHHH---------HHhhcCCcEEEEEcCccc--c----c------c-CH-----HHHHHH
Q 016486 252 LSSHVRAVVATLGGQQGAAARADK---------WQHLYAGFTVWLSQTEAM--D----E------N-SA-----KEEARR 304 (388)
Q Consensus 252 L~~~~~~VVStGGG~~gav~r~en---------r~~L~~g~VVyLd~~~e~--D----~------~-d~-----~e~l~~ 304 (388)
+.. ...||.+|++ +...... ...+..+++|||++|+++ . . . .. ...+.+
T Consensus 81 ~~~-~~~viid~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~ 156 (192)
T 1kht_A 81 MAK-ESPVAVDTHS---TVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNR 156 (192)
T ss_dssp HHT-TSCEEEECCS---EEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHH
T ss_pred hcc-CCeEEEccce---eccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHH
Confidence 333 3456667765 2222211 122234789999999876 1 1 0 11 122344
Q ss_pred HHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486 305 HVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 305 l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L 341 (388)
.+.++...|..+.+.+..+ .+- ++++++++|++.|
T Consensus 157 ~~~~~~~~~~~~~~~~i~~-~~~-~~e~~~~~i~~~i 191 (192)
T 1kht_A 157 CAAMSYGVLTGATVKIVQN-RNG-LLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHHHCCEEEEEEC-CTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEeC-CCC-CHHHHHHHHHHHh
Confidence 4444555565544333222 221 1568998888765
No 37
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.48 E-value=1.5e-13 Score=125.29 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=92.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHH---------------HHHH-HHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV---------------VNGE-CDVL 249 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~F---------------Re~E-~~vL 249 (388)
...|.|+|++||||||+|+.|++.+|++++|+|+++++.++..+.++++..|++.| +..| ...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l 91 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKL 91 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHH
Confidence 46799999999999999999999999999999999988887667777766666533 1111 0111
Q ss_pred -------------HHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccccccCHHHHHHHHHHHh-----Hh
Q 016486 250 -------------ESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDG-----KL 311 (388)
Q Consensus 250 -------------~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D~~d~~e~l~~l~~eR-----~~ 311 (388)
..+......||..+. .+.+..|..+ -+.+|||++|.++ .+++++... ++
T Consensus 92 ~~i~hP~i~~~~~~~~~~~~~~vv~d~p-----ll~e~~~~~~-~d~vi~v~a~~e~-------r~~Rli~~q~~~~~~~ 158 (192)
T 2grj_A 92 ELLVHPLMKKRVQEIINKTSGLIVIEAA-----LLKRMGLDQL-CDHVITVVASRET-------ILKRNREADRRLKFQE 158 (192)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECT-----TTTTTTGGGG-CSEEEEEECCHHH-------HHHHCSSHHHHHTTCT
T ss_pred HhhhCHHHHHHHHHHHHHcCCEEEEEEe-----ceeecChHHh-CCEEEEEECCHHH-------HHHHHHHhcCCchhhh
Confidence 112222345555442 2333333221 2789999999863 222222222 22
Q ss_pred ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 312 GYSNADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 312 ~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
.++.||++|++++ + ++++.+++...++.+
T Consensus 159 ~~~~AD~vI~n~~-~---~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 159 DIVPQGIVVANNS-T---LEDLEKKVEEVMKLV 187 (192)
T ss_dssp TCCCCSEEEECSS-C---HHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEECCC-C---HHHHHHHHHHHHHHH
Confidence 2445999999885 3 458888887777655
No 38
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.48 E-value=8.1e-14 Score=145.95 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=99.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC------CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHV 256 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG------~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~ 256 (388)
.+|..|+|+|+|||||||+++.||..|+ +.|+|+|.+++.+ ++.+. |. .+++..++.+ ..+++.+...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l-~~~l~--f~~~~r~~~~r~i-~~v~q~l~~~~ 442 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL-SSELG--FSKAHRDVNVRRI-GFVASEITKNR 442 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT-TSSCC--CSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh-ccccC--CCHHHHHHHHHHH-HHHHHHHHhcC
Confidence 4688999999999999999999999995 5679999987653 22222 22 2334455544 55666666667
Q ss_pred CeEEEecCCcccccccHHHHHhhcC-C--cEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhccc--cCcEEEEc
Q 016486 257 RAVVATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYS--NADVVVKL 322 (388)
Q Consensus 257 ~~VVStGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~--~AD~vV~~ 322 (388)
.+||+++++. ....+..+++.|.. | ++|||+++.++ +. ......+.+++.+|.++|. .+|++|++
T Consensus 443 ~ivi~~~~~~-~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt 521 (552)
T 3cr8_A 443 GIAICAPIAP-YRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT 521 (552)
T ss_dssp CEEEECCCCC-CHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC
T ss_pred CEEEEecCCc-cHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC
Confidence 7888876541 13556777888876 7 89999999887 11 1123457788889999886 38999999
Q ss_pred CCCCcccHHHHHHHHHHHHHHh
Q 016486 323 QGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
++.++ ++++++|+..|+..
T Consensus 522 ~~~s~---~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 522 TGLAI---DEAVQQILLKLEHE 540 (552)
T ss_dssp SSCCH---HHHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHhc
Confidence 88775 49999999998753
No 39
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.47 E-value=8.5e-14 Score=123.50 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=92.6
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCch------h-----------------hhhhccCc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTI------D-----------------SWMLAEGS 238 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI------~-----------------eif~~~Ge 238 (388)
.|.|+|++||||||+|+.||+.||++++|+|.+.+... |.+. . ++| ..|+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence 79999999999999999999999999999999987652 4321 1 122 2355
Q ss_pred HHHHHHHHHHHH---------------------HHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc---
Q 016486 239 DSVVNGECDVLE---------------------SLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM--- 293 (388)
Q Consensus 239 ~~FRe~E~~vL~---------------------~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~--- 293 (388)
..|+.++.+.+. .+. ..||.-|-. .. ..++. .+++|||++|+++
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~----~~----~~~~~~~d~~i~l~a~~e~~~~ 151 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRD----MG----TAVFPEAAHKFYLTASPEVRAW 151 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESS----CC----CCCCTTCSEEEEEECCHHHHHH
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEccc----ee----EEEecCCcEEEEEECCHHHHHH
Confidence 444332221111 121 334444432 11 11222 3789999999987
Q ss_pred -----cccCHHHHHHHHHHHhHhcc----cc-Cc-EEEEcCCCCcccHHHHHHHHHHHHH
Q 016486 294 -----DENSAKEEARRHVKDGKLGY----SN-AD-VVVKLQGWDADHAKSVAQASLSALK 342 (388)
Q Consensus 294 -----D~~d~~e~l~~l~~eR~~~Y----~~-AD-~vV~~d~~s~e~~eeVa~eIl~~L~ 342 (388)
+..+ .+.+.+++.+|.+.| .. +| ++|++++.++ ++++++|.+.++
T Consensus 152 R~~~r~~~~-~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~---ee~~~~I~~~~~ 207 (208)
T 3ake_A 152 RRARERPQA-YEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTL---DEVVAWVLAHIR 207 (208)
T ss_dssp HHHHTSSSC-HHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCH---HHHHHHHHHHHH
T ss_pred HHHhhcccC-HHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCH---HHHHHHHHHHHh
Confidence 1223 467888999998887 55 77 9999987765 489988887764
No 40
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.46 E-value=8.5e-15 Score=134.94 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=93.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCch------h------------------hhh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTI------D------------------SWM 233 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI------~------------------eif 233 (388)
.++..|.|+|++||||||+++.||+.||++++|+|+++... .|.++ . +++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 35678999999999999999999999999999999998753 34331 1 122
Q ss_pred hccCcHHHHHHHH---------------------HHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCc
Q 016486 234 LAEGSDSVVNGEC---------------------DVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTE 291 (388)
Q Consensus 234 ~~~Ge~~FRe~E~---------------------~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~ 291 (388)
..|+..+|.++. +....+...+.+|+ .|-. .. ...+. .+++|||++++
T Consensus 94 -~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~-~g~~----~~----~~~l~~~d~vi~L~a~~ 163 (236)
T 1q3t_A 94 -VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM-DGRD----IG----TVVLPQAELKIFLVASV 163 (236)
T ss_dssp -ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEE-ECSS----CS----SSSGGGCSEEEEEECCH
T ss_pred -ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEE-ECCc----ch----hhhccCCCEEEEEECCH
Confidence 245532221111 11112223222333 3321 00 11333 38899999999
Q ss_pred cc--c---------c-cCHHHHHHHHHHHhH---------hccccCc-EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 292 AM--D---------E-NSAKEEARRHVKDGK---------LGYSNAD-VVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 292 e~--D---------~-~d~~e~l~~l~~eR~---------~~Y~~AD-~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
++ . + ....+.+.+++.+|. +.|..+| ++|++++.++ ++++++|...++.
T Consensus 164 e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~---eev~~~I~~~l~~ 234 (236)
T 1q3t_A 164 DERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNI---QEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCH---HHHHHHHHHHHHh
Confidence 87 0 1 223566777777763 5676666 8899887665 4999999888764
No 41
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.46 E-value=2.7e-14 Score=127.34 Aligned_cols=148 Identities=13% Similarity=0.040 Sum_probs=91.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc---CchhhhhhccCcHHHH---------------------
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSVV--------------------- 242 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g---~sI~eif~~~Ge~~FR--------------------- 242 (388)
+.|.|+|++||||||+++.||+ +|++++|+|+++++... ..+.++++..|+..|+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999887552 2344555444443321
Q ss_pred -HHHH--------HHHHHHhc-CC-CeEEEecCCcccccccHHHHHhhcCCcEEEEEcCcccc------ccCHHHHHHHH
Q 016486 243 -NGEC--------DVLESLSS-HV-RAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMD------ENSAKEEARRH 305 (388)
Q Consensus 243 -e~E~--------~vL~~L~~-~~-~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D------~~d~~e~l~~l 305 (388)
.++. .+.+.+.. .. ..||..|.. +.+.++..+ .+.+|||++|+++- .....+.+.++
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~-----l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~ 154 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASL-----LVEKGTYKN-YDKLIVVYAPYEVCKERAIKRGMSEEDFERR 154 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSC-----STTTTCGGG-SSEEEEECCCHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccc-----cccCCchhh-CCEEEEEECCHHHHHHHHHHcCCCHHHHHHH
Confidence 1111 01111111 22 566666632 333333322 47899999998761 11123456666
Q ss_pred HHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 306 VKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 306 ~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
+..+.+ .+..||++|+++ .+ +++++++|...++.+.
T Consensus 155 ~~~~~~~~~~~~~ad~vId~~-~~---~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 155 WKKQMPIEEKVKYADYVIDNS-GS---IEETYKQVKKVYEELT 193 (204)
T ss_dssp HTTSCCHHHHGGGCSEECCCS-SC---HHHHHHHHHHHHHTTC
T ss_pred HHhCCChhHHHhcCCEEEECC-CC---HHHHHHHHHHHHHHHh
Confidence 666544 234489888776 33 5589998888876543
No 42
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.44 E-value=1.1e-12 Score=116.84 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCch----hhhhhccCcHHHHHHHHHHHHH-----H
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTI----DSWMLAEGSDSVVNGECDVLES-----L 252 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI----~eif~~~Ge~~FRe~E~~vL~~-----L 252 (388)
+.+.|+|+|++||||||+++.||+.+|++++|+|+++++.. +..+ .+++. .|+..+++.+..++.+ +
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence 34679999999999999999999999999999999988753 3333 33443 3554444444433332 2
Q ss_pred hcCCCeEEEecCCcccccccHHHHH-hhc-CCcEEEEEcCccc--------cc-----cCHHHHHH----HHHHHhHhc-
Q 016486 253 SSHVRAVVATLGGQQGAAARADKWQ-HLY-AGFTVWLSQTEAM--------DE-----NSAKEEAR----RHVKDGKLG- 312 (388)
Q Consensus 253 ~~~~~~VVStGGG~~gav~r~enr~-~L~-~g~VVyLd~~~e~--------D~-----~d~~e~l~----~l~~eR~~~- 312 (388)
......+|-.|-.. ........+ .+. .+++|||++|+++ +. .+..+.+. ..++.+.+.
T Consensus 93 ~~g~~~~i~dg~~~--~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~ 170 (203)
T 1ukz_A 93 KANKHKFLIDGFPR--KMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI 170 (203)
T ss_dssp HTTCCEEEEETCCC--SHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred ccCCCeEEEeCCCC--CHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 22223444444220 011111111 233 3789999999987 10 12233333 334445554
Q ss_pred --cccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 313 --YSNADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 313 --Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
|..++.++.+++..+ +++++++|.+.|+..
T Consensus 171 ~~~~~~~~vi~id~~~~--~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 171 EYFETKSKVVRVRCDRS--VEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHTTTCEEEEECSSC--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 455776543433222 569999999888753
No 43
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.44 E-value=6.4e-14 Score=123.81 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=90.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhcc------Cc---HHHH-----------H
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAE------GS---DSVV-----------N 243 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~------Ge---~~FR-----------e 243 (388)
+...|.|+|++||||||+|+.||+. |++++|+|+++++.. |.+ .++++.. |. ..+. .
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLFPEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 4568999999999999999999999 999999999987766 533 2332221 11 1111 1
Q ss_pred HHH--------HHHHHHhcC-CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHHH
Q 016486 244 GEC--------DVLESLSSH-VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRHV 306 (388)
Q Consensus 244 ~E~--------~vL~~L~~~-~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l~ 306 (388)
++. ..+...... .++||..+. .+...+|.. ..+.+|||+++++. +..+ .+.+.+++
T Consensus 85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-----~l~~~~~~~-~~d~~i~l~~~~e~~~~R~~~R~~~~-~~~~~~~i 157 (203)
T 1uf9_A 85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIP-----LLFEKGWEG-RLHGTLLVAAPLEERVRRVMARSGLS-REEVLARE 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSEEEEECT-----TTTTTTCGG-GSSEEEEECCCHHHHHHHHHTTTCCT-THHHHHHH
T ss_pred HHHHhChHHHHHHHHHhhhcCCCEEEEEec-----ceeccCchh-hCCEEEEEECCHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 111 111111122 456776642 233332221 13789999999876 1112 34455666
Q ss_pred HHhHhcc---ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 307 KDGKLGY---SNADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 307 ~eR~~~Y---~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
..+.+.| ..||++|++++ + +++++++|...++.+.
T Consensus 158 ~~~~~~~~~~~~ad~vId~~~-~---~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 158 RAQMPEEEKRKRATWVLENTG-S---LEDLERALKAVLAELT 195 (203)
T ss_dssp TTSCCHHHHHHHCSEEECCSS-H---HHHHHHHHHHHHHSCC
T ss_pred HHCCChhHHHHhCCEEEECCC-C---HHHHHHHHHHHHHHHH
Confidence 6555443 34898887775 3 4589988888887543
No 44
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.42 E-value=9.4e-13 Score=121.00 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=70.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcC---
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH--- 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~--- 255 (388)
+++.|+|+|++||||||+|+.||+.||++++++|+++++. .|+.+.+++.. |+..+++.+.+++......
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA-GKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHC-CCcCCHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999998874 34456666643 5555666666666554322
Q ss_pred CCeEEEecCCcccccccHHHH-Hhhc-----CCcEEEEEcCccc
Q 016486 256 VRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr-~~L~-----~g~VVyLd~~~e~ 293 (388)
...||..|-.. .....+.+ +.+. .+.+|||+++.++
T Consensus 94 ~~g~ildg~~~--~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~ 135 (233)
T 1ak2_A 94 KNGFLLDGFPR--TVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135 (233)
T ss_dssp TTCEEEESCCC--SHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred cCcEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 23355444210 00000111 1221 3689999999877
No 45
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.42 E-value=5.5e-13 Score=116.58 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=86.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhhhccCcH------HHHHHHH-----HHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSD------SVVNGEC-----DVLESL 252 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif~~~Ge~------~FRe~E~-----~vL~~L 252 (388)
+.|+|+|++||||||+++.|++.| |++++++|.......|..+.+++.. |+- .|...+. +++...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999 9999999864333333344455543 321 1212221 122233
Q ss_pred hcCCCeEEEe----------cCCcccccccHHHHH----hh----cCCcEEEEEcCccc--------cccC---HHHHHH
Q 016486 253 SSHVRAVVAT----------LGGQQGAAARADKWQ----HL----YAGFTVWLSQTEAM--------DENS---AKEEAR 303 (388)
Q Consensus 253 ~~~~~~VVSt----------GGG~~gav~r~enr~----~L----~~g~VVyLd~~~e~--------D~~d---~~e~l~ 303 (388)
...+..||+. |++. ........ .+ ..+.+|||++|+++ +..+ ..+++.
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~ 156 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGK---GLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVR 156 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTT---CCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccC---CCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHH
Confidence 3345667765 5442 33322221 12 23789999999987 1111 122222
Q ss_pred HHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 304 RHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 304 ~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
+.|.+....| ...++|++++ + +++++++|.+.++.++
T Consensus 157 ~~~~~~~~~~-~~~~~Id~~~-~---~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 157 KGFLELAKEE-ENVVVIDASG-E---EEEVFKEILRALSGVL 193 (195)
T ss_dssp HHHHHHHHHS-TTEEEEETTS-C---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC-CCEEEEECCC-C---HHHHHHHHHHHHHHHh
Confidence 2333333333 2337777743 3 5699999988887653
No 46
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.42 E-value=2.8e-13 Score=122.48 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=93.7
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC------CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSH 255 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG------~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~ 255 (388)
...+++.|+|+|++||||||+++.|++.|+ +.++|+|.+.+...+. . .++...++..|+.++. ++..+...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~-~-~~~~~~r~~~~~~~~~-~~~~~l~~ 97 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKD-L-GFSEADRNENIRRIAE-VAKLFADS 97 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTT-C-CSSHHHHHHHHHHHHH-HHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccc-c-CCCHHHHHHHHHHHHH-HHHHHHHC
Confidence 344678999999999999999999999987 8888988875432211 1 1233556667776654 34344444
Q ss_pred CCeEEEecCCcccccccHHHHHhhc-------C-------CcEEEEEcCccc--c--ccCHHHHHHH----HHHHhHhcc
Q 016486 256 VRAVVATLGGQQGAAARADKWQHLY-------A-------GFTVWLSQTEAM--D--ENSAKEEARR----HVKDGKLGY 313 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~~L~-------~-------g~VVyLd~~~e~--D--~~d~~e~l~~----l~~eR~~~Y 313 (388)
+..||++. + .. ...+++.++ . ..+|||++|+++ . ......+.++ +++.+...|
T Consensus 98 g~~VI~d~-~---~~-~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y 172 (211)
T 1m7g_A 98 NSIAITSF-I---SP-YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPY 172 (211)
T ss_dssp TCEEEEEC-C---CC-CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCC
T ss_pred CCEEEEec-C---Cc-cHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhc
Confidence 56777773 2 12 223333322 1 479999999875 1 1111111111 112334456
Q ss_pred c---cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 314 S---NADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 314 ~---~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
. .++++|++++.++ ++++++|+..++.
T Consensus 173 ~~~~~~~~~IDt~~~s~---eev~~~I~~~l~~ 202 (211)
T 1m7g_A 173 EAPANPEVHVKNYELPV---QDAVKQIIDYLDT 202 (211)
T ss_dssp CCCSSCSEEEECSSSCH---HHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCH---HHHHHHHHHHHHH
Confidence 5 3689999988665 4999999988875
No 47
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.41 E-value=6e-13 Score=141.41 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=101.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCCeE
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRAV 259 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~~V 259 (388)
++++.|+|+|++||||||+|+.|+++| |++++++|..+.+ .++.....|. +.+++.||++. ++++.+...+.+|
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR-~~L~~~~~fs~~dree~~r~i~-eva~~~l~~G~iV 127 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR-QGLNKNLGFSPEDREENVRRIA-EVAKLFADAGLVC 127 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT-TTTTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh-hccCccccCChhhhHHHHHHHH-HHHHHHHhCCCEE
Confidence 367889999999999999999999999 9999998755443 2444444565 56788888874 3555555545555
Q ss_pred EEecCCcccccc---cHHHHHhhcC-C---cEEEEEcCccc----cccCHHH----HHHHHHHHhHhccc---cCcEEEE
Q 016486 260 VATLGGQQGAAA---RADKWQHLYA-G---FTVWLSQTEAM----DENSAKE----EARRHVKDGKLGYS---NADVVVK 321 (388)
Q Consensus 260 VStGGG~~gav~---r~enr~~L~~-g---~VVyLd~~~e~----D~~d~~e----~l~~l~~eR~~~Y~---~AD~vV~ 321 (388)
|+ +++ .+. ++.+++.+.. + ++|||++|+++ +...... .....+..|...|. .+|++|+
T Consensus 128 I~-d~~---s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~~~~~~~Ye~p~~~dlvID 203 (630)
T 1x6v_B 128 IT-SFI---SPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLK 203 (630)
T ss_dssp EE-ECC---CCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----CBTTTBCCCCCSSCSEEEE
T ss_pred EE-eCc---hhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHHHHhhhhhcccCCCcEEEE
Confidence 54 333 233 5566666654 3 49999999976 1110000 00112344667786 3889999
Q ss_pred cCCCCcccHHHHHHHHHHHHHH
Q 016486 322 LQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 322 ~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+++.++ ++++++|++.|+.
T Consensus 204 ts~~s~---eevv~~Il~~L~~ 222 (630)
T 1x6v_B 204 TDSCDV---NDCVQQVVELLQE 222 (630)
T ss_dssp TTSSCH---HHHHHHHHHHHHH
T ss_pred CCCCCH---HHHHHHHHHHHHh
Confidence 988765 4999999998875
No 48
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.40 E-value=4.7e-13 Score=118.58 Aligned_cols=154 Identities=8% Similarity=0.058 Sum_probs=90.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH-HHHhcCchhhhhhccCc---HHH-------HHHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQTIDSWMLAEGS---DSV-------VNGECDVLESL 252 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI-E~~~g~sI~eif~~~Ge---~~F-------Re~E~~vL~~L 252 (388)
+++.|+|+|++||||||+++.|++.| |+++++++... ....|..+.++|...+. ... |....+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~ 82 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ 82 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 69999987654 33345556666654321 000 00001122333
Q ss_pred hcCCCeEEE-----------ecCCcccccccHHHHHhh-----cCCcEEEEEcCccc--c-----c-c--CHHHHHHHHH
Q 016486 253 SSHVRAVVA-----------TLGGQQGAAARADKWQHL-----YAGFTVWLSQTEAM--D-----E-N--SAKEEARRHV 306 (388)
Q Consensus 253 ~~~~~~VVS-----------tGGG~~gav~r~enr~~L-----~~g~VVyLd~~~e~--D-----~-~--d~~e~l~~l~ 306 (388)
...+..||+ +|+| .. .+....+ ..+.+|||++|+++ . . + ...+++...|
T Consensus 83 l~~~~~vi~Dr~~~s~~~~~~~~g---~~--~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl~~~y 157 (204)
T 2v54_A 83 LEQGITLIVDRYAFSGVAYAAAKG---AS--MTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQEY 157 (204)
T ss_dssp HHTTCEEEEESCHHHHHHHHHHTT---CC--HHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHHHHHH
T ss_pred HHCCCEEEEECchhhHHHHHHccC---CC--HHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHHHHHH
Confidence 334566774 3344 11 2222222 23789999999876 1 1 1 1233444445
Q ss_pred HHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 307 KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 307 ~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
.+....|....++|+.+ .+ +++++++|.+.++..+..
T Consensus 158 ~~~~~~~~~~~~~Id~~-~~---~~~v~~~i~~~l~~~l~~ 194 (204)
T 2v54_A 158 KKMIEEGDIHWQIISSE-FE---EDVKKELIKNIVIEAIHT 194 (204)
T ss_dssp HHHHTTCSSCEEEECTT-SC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEECC-CC---HHHHHHHHHHHHHHHHhh
Confidence 54444443223556553 33 569999999999887653
No 49
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.38 E-value=3.8e-12 Score=119.18 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~ 223 (388)
++..|.|+|++||||||+++.||++||+.++|+|.++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 567899999999999999999999999999999999844
No 50
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.37 E-value=2.8e-12 Score=112.47 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=86.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
+|+.|+|+|++||||||+++.|++.| |++++++|...... .......+ ...++..|++++.. ...+... ..++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 80 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-GLNKNLGFSPEDREENVRRIAEV-AKLFADA-GLVC 80 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHHHHHHH-HHHHHHT-TCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-HHhhccccccccHHHHHHHHHHH-HHHHHHC-CCEE
Confidence 57899999999999999999999998 99999766443321 11111112 23456677776642 2222232 3344
Q ss_pred EecCCcccccc---cHHHHHhhc-CC---cEEEEEcCccccccCHHHHHHH-HHH-HhH----------hccc---cCcE
Q 016486 261 ATLGGQQGAAA---RADKWQHLY-AG---FTVWLSQTEAMDENSAKEEARR-HVK-DGK----------LGYS---NADV 318 (388)
Q Consensus 261 StGGG~~gav~---r~enr~~L~-~g---~VVyLd~~~e~D~~d~~e~l~~-l~~-eR~----------~~Y~---~AD~ 318 (388)
.++ +. .+. +..+++.+. .+ .+|||++|+++ ..+++.+ .+. .|. +.|+ .||+
T Consensus 81 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~----~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 153 (179)
T 2pez_A 81 ITS-FI--SPYTQDRNNARQIHEGASLPFFEVFVDAPLHV----CEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPEL 153 (179)
T ss_dssp EEE-CC--CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHH----HHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSE
T ss_pred EEe-cC--CcchHHHHHHHHHhhccCCCeEEEEEeCCHHH----HHHHHhhhhHHHHhcccccccccCCccccCCCCCcE
Confidence 333 42 122 344444444 24 68999999865 1111100 011 122 2343 2789
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 319 VVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 319 vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+|++++.++ ++++++|...++.
T Consensus 154 vid~~~~~~---~~~~~~i~~~l~~ 175 (179)
T 2pez_A 154 VLKTDSCDV---NDCVQQVVELLQE 175 (179)
T ss_dssp EEETTTSCH---HHHHHHHHHHHHH
T ss_pred EEECCCCCH---HHHHHHHHHHHHH
Confidence 998887765 4999999888764
No 51
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.36 E-value=2.7e-12 Score=117.57 Aligned_cols=101 Identities=6% Similarity=-0.015 Sum_probs=67.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcC--CCe
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH--VRA 258 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~--~~~ 258 (388)
+.|+|+|++||||||+++.||+.||++++++|+++++. .|..+.+++. .|+..+++....++...... +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence 46999999999999999999999999999999998876 2334455554 35544455555554443322 445
Q ss_pred EEEecCCcccccccHHHHHhh---------cCCcEEEEEcCccc
Q 016486 259 VVATLGGQQGAAARADKWQHL---------YAGFTVWLSQTEAM 293 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L---------~~g~VVyLd~~~e~ 293 (388)
||..|-. ........| ....+|||++|+++
T Consensus 80 vIlDg~~-----~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~ 118 (223)
T 2xb4_A 80 WLLDGFP-----RNTVQAQKLFEALQEKGMKINFVIEILLPREV 118 (223)
T ss_dssp EEEESCC-----CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred EEEeCCc-----CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 6665522 221112222 12579999999987
No 52
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.36 E-value=3.8e-12 Score=114.15 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=85.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc---CCc--ceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA 258 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~ 258 (388)
.++..|+|+|++||||||+++.||..| |.. ++|+|.+...... .+. +..+.....++.+ ..+...+...+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 99 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR-DLS-FKAEDRAENIRRV-GEVAKLFADAGII 99 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-TCC-SSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc-ccC-cChHHHHHHHHHH-HHHHHHHHhCCce
Confidence 357899999999999999999999999 666 9999987542211 110 1111111222222 2344444444555
Q ss_pred EEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccccccCHHHHH-HHHH-HHhH----------hccc---cCc
Q 016486 259 VVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAMDENSAKEEA-RRHV-KDGK----------LGYS---NAD 317 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~D~~d~~e~l-~~l~-~eR~----------~~Y~---~AD 317 (388)
||++..+ ..+..++.++ . .++|||++++++ ..++. ..++ ..|. ..|. .++
T Consensus 100 vi~~~~~-----~~~~~r~~~~~~~~~~~~~~v~L~a~~e~----~~~R~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~ 170 (200)
T 3uie_A 100 CIASLIS-----PYRTDRDACRSLLPEGDFVEVFMDVPLSV----CEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCE 170 (200)
T ss_dssp EEEECCC-----CCHHHHHHHHHTSCTTSEEEEEECCCHHH----HHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCS
T ss_pred EEEecCC-----chHHHHHHHHHhcCCCCEEEEEEeCCHHH----HHHhcccchHHHHhcCCCCCCCCCCCcCcCCCCCC
Confidence 5554432 2344454443 2 246999999864 00110 0011 1111 2354 377
Q ss_pred EEEEcCC-CCcccHHHHHHHHHHHHHHh
Q 016486 318 VVVKLQG-WDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 318 ~vV~~d~-~s~e~~eeVa~eIl~~L~~~ 344 (388)
++|++++ .++ ++++++|++.|+..
T Consensus 171 ~~idt~~~~~~---~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 171 ISLGREGGTSP---IEMAEKVVGYLDNK 195 (200)
T ss_dssp EEECCSSCCCH---HHHHHHHHHHHHHH
T ss_pred EEEecCCCCCH---HHHHHHHHHHHHHc
Confidence 9999988 565 49999999998754
No 53
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.36 E-value=4.4e-13 Score=118.33 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=86.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~ 257 (388)
.++..|+|+|++||||||+++.||+.|+ +.++|+|.+.+...+. ..|. .+.+..++.+ ..+.+.+...+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~r~~~~~~~-~~~~~~~~~~g~ 86 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEG---AGFTREERLRHLKRI-AWIARLLARNGV 86 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTT---CCCCHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhc---cCCChhhHHHHHHHH-HHHHHHHHhCCC
Confidence 3678899999999999999999999986 4678998875433221 0111 1111122211 112223333344
Q ss_pred eEEEecCCcccccccHHHHHhhc----CCcEEEEEcCcccc----ccCHHH-----HHHHHHHHhHhccc---cCcEEEE
Q 016486 258 AVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMD----ENSAKE-----EARRHVKDGKLGYS---NADVVVK 321 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e~D----~~d~~e-----~l~~l~~eR~~~Y~---~AD~vV~ 321 (388)
.||+ +++......++..+..+. .+.+|||++|+++- .....+ .+..+...|.. |. .++++|+
T Consensus 87 ~vi~-d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~Id 164 (186)
T 2yvu_A 87 IVIC-SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDP-YEPPENPQLVLD 164 (186)
T ss_dssp EEEE-ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSC-CCCCSSCSEEEE
T ss_pred EEEE-eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhc-ccCCCCCcEEEE
Confidence 4444 433100122344455444 25799999998750 000000 00111223333 55 3789999
Q ss_pred cCCCCcccHHHHHHHHHHHHHHhh
Q 016486 322 LQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 322 ~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
+++.++ ++++++|+..|+.++
T Consensus 165 ~~~~~~---~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 165 TESNTI---EHNVSYLYSLVKAVI 185 (186)
T ss_dssp TTTSCH---HHHHHHHHHHHHHHC
T ss_pred CCCCCH---HHHHHHHHHHHHHhc
Confidence 987665 499999999987653
No 54
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.34 E-value=6.4e-12 Score=109.43 Aligned_cols=148 Identities=9% Similarity=-0.013 Sum_probs=84.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhc-Cchh---hhhhccC----cHHHHHHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAK-QTID---SWMLAEG----SDSVVNGECDVLESLS 253 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g-~sI~---eif~~~G----e~~FRe~E~~vL~~L~ 253 (388)
+.|+|+|++||||||+++.|+++|+ +.++++|+++.+..+ ..+. +-|.... ...+..+... +....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l 80 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA 80 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHh
Confidence 4699999999999999999999998 899999998876652 2111 0000000 0111111111 22222
Q ss_pred --cCCCeEEEecCCccccccc---------HHHHHhhcCCcEEEEEcCccc-------c--cc--C---H-----HHHHH
Q 016486 254 --SHVRAVVATLGGQQGAAAR---------ADKWQHLYAGFTVWLSQTEAM-------D--EN--S---A-----KEEAR 303 (388)
Q Consensus 254 --~~~~~VVStGGG~~gav~r---------~enr~~L~~g~VVyLd~~~e~-------D--~~--d---~-----~e~l~ 303 (388)
..+..||+.|.+ .... .+....+..+.+|||++|+++ + .. + . .+.+.
T Consensus 81 ~~~~~~~vi~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~ 157 (194)
T 1nks_A 81 RAGGEGYLFIDTHA---VIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFA 157 (194)
T ss_dssp HHTCSSEEEEEECS---EEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHH
T ss_pred hccCCCEEEECCch---hhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHH
Confidence 345678877753 1111 222233345889999999876 2 11 1 1 12244
Q ss_pred HHHHHhHhccccCcEEEE-cCCCCcccHHHHHHHHHHHH
Q 016486 304 RHVKDGKLGYSNADVVVK-LQGWDADHAKSVAQASLSAL 341 (388)
Q Consensus 304 ~l~~eR~~~Y~~AD~vV~-~d~~s~e~~eeVa~eIl~~L 341 (388)
+.+.++...|..+++++. ....+ +++++++|.+.|
T Consensus 158 ~~~~~~~~~~~~~~~~~I~d~~~~---~e~v~~~I~~~l 193 (194)
T 1nks_A 158 RYAATASAVLAGSTVKVIVNVEGD---PSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHTCEEEEEECCSSC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHh
Confidence 555666555644453332 22233 568998888765
No 55
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.34 E-value=3.6e-12 Score=112.21 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=82.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch-hhhhhccCcHHH------HHHHHHHHHHHhcCCCeE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI-DSWMLAEGSDSV------VNGECDVLESLSSHVRAV 259 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI-~eif~~~Ge~~F------Re~E~~vL~~L~~~~~~V 259 (388)
+.|+|+|++||||||+++.||+.|++.+++-.. .|..+ ..++...+...| ...+.+.+......+. |
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-v 74 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-----EENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-I 74 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-----GGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-E
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-----cccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-E
Confidence 469999999999999999999999998875211 12221 111111111111 1111111222222233 4
Q ss_pred EEec--------------CCcccccccHH----------HHHhh-------c-CCcEEEEEcCccc------c-c-----
Q 016486 260 VATL--------------GGQQGAAARAD----------KWQHL-------Y-AGFTVWLSQTEAM------D-E----- 295 (388)
Q Consensus 260 VStG--------------GG~~gav~r~e----------nr~~L-------~-~g~VVyLd~~~e~------D-~----- 295 (388)
|... +| .+...+ ....| . .+.+|||++|+++ . +
T Consensus 75 i~d~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~ 151 (205)
T 2jaq_A 75 IFDRTLLEDPIFMKVNYDLN---NVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEEL 151 (205)
T ss_dssp EEESCTTTHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHH
T ss_pred EEEeccchhHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhh
Confidence 4432 22 122221 11222 2 3689999999987 1 1
Q ss_pred ---cCHHHHHHHHHHHhHhccc-c-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 296 ---NSAKEEARRHVKDGKLGYS-N-ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 296 ---~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
....+.+.+.+.++.+.|. . ++++|++++ + +++++++|...++.+.
T Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~-~---~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 152 LIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-D---VKTQIELIMNKLNSIK 202 (205)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS-C---HHHHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC-C---HHHHHHHHHHHHHHhc
Confidence 0223456777777778885 3 889999887 4 5699999998887543
No 56
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.33 E-value=8.4e-12 Score=112.12 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=62.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHH-Hhc--CCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSS--HVR 257 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~-L~~--~~~ 257 (388)
++|+|+|++||||||+++.||+.+|++++|+|+++.+... ..+.+++.. |.....++...++.. +.. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence 4699999999999999999999999999999999887432 234444433 322222222333332 221 123
Q ss_pred eEEEecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc
Q 016486 258 AVVATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM 293 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~ 293 (388)
.||..|- .........+ . ...+|||++|.++
T Consensus 80 ~~ildg~-----p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~ 119 (216)
T 3fb4_A 80 GFLLDGF-----PRTVAQADALDSLLTDLGKKLDYVLNIKVEQEE 119 (216)
T ss_dssp CEEEESC-----CCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHH
T ss_pred cEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 4444442 2222222222 1 2579999999876
No 57
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.33 E-value=1.2e-11 Score=111.35 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=35.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
++|+|+|++||||||+++.||+.+|++++|+|+++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~ 38 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAA 38 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 46999999999999999999999999999999998874
No 58
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.33 E-value=6.8e-13 Score=123.50 Aligned_cols=150 Identities=11% Similarity=0.026 Sum_probs=87.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc----------ceechhHHHHHhcCchh-----h-hhhc---cCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELLETFAKQTID-----S-WMLA---EGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~----------fID~D~lIE~~~g~sI~-----e-if~~---~Ge~~FRe~E 245 (388)
+...|.|+|++||||||+|+.||+.||++ ++|+|+++.......+. + .|.. ...+.++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~--- 97 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL--- 97 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH---
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH---
Confidence 34579999999999999999999999998 69999987521111111 0 1111 1111222
Q ss_pred HHHHHHHhc------------------------CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------
Q 016486 246 CDVLESLSS------------------------HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------- 293 (388)
Q Consensus 246 ~~vL~~L~~------------------------~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------- 293 (388)
+.|+.+.. ....||..|.. +...+..+.. .+.+|||+++.++
T Consensus 98 -~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~---~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R 171 (252)
T 1uj2_A 98 -KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL---AFYSQEVRDL--FQMKLFVDTDADTRLSRRVLR 171 (252)
T ss_dssp -HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT---TTSSHHHHHH--CSEEEEEECCHHHHHHHHHHH
T ss_pred -HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec---cccCHHHHHh--cCeeEEEeCCHHHHHHHHHHH
Confidence 33444421 23578888854 1224433222 2789999999987
Q ss_pred cc---cCHHHHHHHHHHHhH---------hccccCcEEEE--cCCCCcccHHHHHHHHHHHHHHhh
Q 016486 294 DE---NSAKEEARRHVKDGK---------LGYSNADVVVK--LQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 294 D~---~d~~e~l~~l~~eR~---------~~Y~~AD~vV~--~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
+. ....+.+.+.+..|. +.+..||++|. +++. .++++++++|...+....
T Consensus 172 ~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~--~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 172 DISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNL--VAINLIVQHIQDILNGGP 235 (252)
T ss_dssp HHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCH--HHHHHHHHHHHHHHHC--
T ss_pred HHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCCh--hHHHHHHHHHHHHHccch
Confidence 10 122445555555433 34555999882 2321 125688888877776543
No 59
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.32 E-value=4e-12 Score=109.82 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=71.3
Q ss_pred CeEEEEecCCCchHHHHHHHHH-hcCCcceechhHHHHHhcCchh--hhhhccCcHHHHHHHHHHHHHHh---cCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAV-GLGYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLS---SHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk-~LG~~fID~D~lIE~~~g~sI~--eif~~~Ge~~FRe~E~~vL~~L~---~~~~~VV 260 (388)
+.|+|+|++||||||+++.|++ .+|+.++++|.+.+...+++.. ..+...++..+++...++++... ..+..||
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi 82 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI 82 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEE
Confidence 5799999999999999999999 7999999999988877765332 12344456667666666666665 4456666
Q ss_pred EecCCcccccccHHHHHhh----cC-C---cEEEEEcCccc
Q 016486 261 ATLGGQQGAAARADKWQHL----YA-G---FTVWLSQTEAM 293 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L----~~-g---~VVyLd~~~e~ 293 (388)
..+.. .....++.+ .. + .+|||++|.++
T Consensus 83 ~d~~~-----~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~ 118 (181)
T 1ly1_A 83 ISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTE 118 (181)
T ss_dssp ECSCC-----CSHHHHHHHHHHHHHHTCEEEEEECCCCHHH
T ss_pred EeCCC-----CCHHHHHHHHHHHHHcCCCEEEEEEeCCHHH
Confidence 65533 333333322 21 3 59999998876
No 60
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.32 E-value=1.6e-12 Score=128.98 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=85.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhh-hhccCcHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSW-MLAEGSDSVVNG 244 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~ei-f~~~Ge~~FRe~ 244 (388)
++..|+|+|++||||||||..||++++..+||+|.+ +++..|. ++.++ ++..+...|++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 345899999999999999999999999999999998 5666666 56677 778899999999
Q ss_pred HHHHHHHHhcCCCeEEEecCCcccccccHHHHHh---------------------hc-CCcEEEEEcCccc
Q 016486 245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQH---------------------LY-AGFTVWLSQTEAM 293 (388)
Q Consensus 245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~---------------------L~-~g~VVyLd~~~e~ 293 (388)
+.++++++...++.+|.+||+ ..+......- +. ..++|||+.+.+.
T Consensus 119 a~~~i~~i~~~g~~pIlvGGt---glYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~ 186 (339)
T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGS---NSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKV 186 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCC---HHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHH
T ss_pred HHHHHHHHHhcCCeEEEEcCH---HHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHH
Confidence 999999998888899999997 2433333321 22 2578999988765
No 61
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.29 E-value=1.8e-11 Score=110.63 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=64.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHH-HhcC--CC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES-LSSH--VR 257 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~--~~ 257 (388)
++|+|+|++||||||+++.||+.+|++++++|+++.+. .|..+.+++.. |.....+....++.. +... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~ 79 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRN 79 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCC
Confidence 46999999999999999999999999999999999874 23455666653 321112222223322 2221 13
Q ss_pred eEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc
Q 016486 258 AVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 258 ~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~ 293 (388)
.||..|- .........|. .+.+|||+++.++
T Consensus 80 ~~i~dg~-----~~~~~~~~~l~~~~~~~d~vi~l~~~~e~ 115 (214)
T 1e4v_A 80 GFLLDGF-----PRTIPQADAMKEAGINVDYVLEFDVPDEL 115 (214)
T ss_dssp CEEEESC-----CCSHHHHHHHHHTTCCCSEEEEEECCHHH
T ss_pred CEEEeCC-----CCCHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 4555552 22223333332 2579999999876
No 62
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.28 E-value=3.3e-11 Score=114.94 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=90.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhh--------hhccCc--------HHHH----
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSW--------MLAEGS--------DSVV---- 242 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~ei--------f~~~Ge--------~~FR---- 242 (388)
...|+|+|++||||||+|+.|+ .+|+++||+|.+..+.... ...++ +..+|. ..|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 4579999999999999999999 6899999999996654321 11111 111110 1111
Q ss_pred --HHH-----------HHHHHHHhcC-CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHH
Q 016486 243 --NGE-----------CDVLESLSSH-VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKE 300 (388)
Q Consensus 243 --e~E-----------~~vL~~L~~~-~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e 300 (388)
.++ .+.+..+... ...||..|.. +....|..+ .+.+|||++|+++ ++.+ .+
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~-----l~~~~~~~~-~d~vI~l~a~~ev~~~Rl~~R~g~s-~e 226 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM-----LLEAGWQSM-VHEVWTVVIPETEAVRRIVERDGLS-EA 226 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT-----TTTTTGGGG-CSEEEEEECCHHHHHHHHHHHHCCC-HH
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech-----hhccchHHh-CCEEEEEcCCHHHHHHHHHHcCCCC-HH
Confidence 111 1122222222 3578888754 222223211 3789999999876 1222 34
Q ss_pred HHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 301 EARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 301 ~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
.+.+++..+.+ .+..||++|++++ + ++++.++|...++.+...
T Consensus 227 ~~~~ri~~q~~~~~~~~~AD~vIdn~~-s---~eel~~~I~~~l~~l~~~ 272 (281)
T 2f6r_A 227 AAQSRLQSQMSGQQLVEQSNVVLSTLW-E---SHVTQSQVEKAWNLLQKR 272 (281)
T ss_dssp HHHHHHHTSCCHHHHHHTCSEEEECSS-C---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHhhHhhCCEEEECCC-C---HHHHHHHHHHHHHHHHHH
Confidence 45555555422 2345999998875 4 458999998888876543
No 63
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.28 E-value=4e-11 Score=108.01 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~ 224 (388)
+..|.|+|++||||||+++.|++.+|++++|+|+++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 468999999999999999999999999999999998753
No 64
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.27 E-value=1.4e-11 Score=109.61 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=84.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH----HHhcCchhhhhhccC---cH----HHHH--HH-HHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE----TFAKQTIDSWMLAEG---SD----SVVN--GE-CDVL 249 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE----~~~g~sI~eif~~~G---e~----~FRe--~E-~~vL 249 (388)
.+++.|+|+|++||||||+++.|++.|+..++++|.+.+ ...|..+.++|...+ .. .|.. .+ .+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998876666543322 111223444443211 00 0100 00 0123
Q ss_pred HHHhcCCCeEEEec----------CCcccccccHHHHHhhc-----CCcEEEEEcCccc---------cccC---HHHHH
Q 016486 250 ESLSSHVRAVVATL----------GGQQGAAARADKWQHLY-----AGFTVWLSQTEAM---------DENS---AKEEA 302 (388)
Q Consensus 250 ~~L~~~~~~VVStG----------GG~~gav~r~enr~~L~-----~g~VVyLd~~~e~---------D~~d---~~e~l 302 (388)
..+...+..||+.. ++ . ....+....+. .+.+|||++|+++ +..+ ..+.+
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~-~--~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~ 163 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAK-E--NFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERA 163 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTS-T--TCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHH
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhc-C--CCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHH
Confidence 33334456777662 11 0 11233333332 3689999999886 1111 11233
Q ss_pred HHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 303 RRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 303 ~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
.+.|.+....|....++|+.+ .+ +++++++|.+.++.++..
T Consensus 164 ~~~~~~~~~~~~~~~~~Id~~-~~---~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 164 LRCFHQLMKDTTLNWKMVDAS-KS---IEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp HHHHHHHTTCTTSCEEEEETT-SC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEECC-CC---HHHHHHHHHHHHHHHHhh
Confidence 333333333332223667654 33 569999999999887653
No 65
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.25 E-value=6.9e-11 Score=110.14 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=92.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCc----HHHHHHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLESLS 253 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge----~~FRe~E~~vL~~L~ 253 (388)
.+.+.|+|+|+|||||+|+|+.||+.+|+++|++++++.+.... .+.+++. .|+ +..-++-.+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999999999999999998776532 2233332 233 222222222232333
Q ss_pred cCCCeEEEecCCcccccccHHHHHhhc----C-CcEEEEEcCccc--c-----------ccCHHHHHHHHHHH----h--
Q 016486 254 SHVRAVVATLGGQQGAAARADKWQHLY----A-GFTVWLSQTEAM--D-----------ENSAKEEARRHVKD----G-- 309 (388)
Q Consensus 254 ~~~~~VVStGGG~~gav~r~enr~~L~----~-g~VVyLd~~~e~--D-----------~~d~~e~l~~l~~e----R-- 309 (388)
.....+|-.| -+........|. . ..||+|+++.++ + .+|..+.++++++. -
T Consensus 106 ~~~~g~ilDG-----fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~p 180 (217)
T 3umf_A 106 DKNCHFLIDG-----YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKP 180 (217)
T ss_dssp TTCSEEEEET-----BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHH
T ss_pred ccccCccccc-----CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3334555555 244333333332 2 689999999887 0 12233444444332 1
Q ss_pred -HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 310 -KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 310 -~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
..+|++...++.+++..+ +++|.++|...|+++
T Consensus 181 l~~~Y~~~~~l~~Idg~~~--~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 181 VIEHYKQQNKVITIDASGT--VDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHHHTTTCEEEEETTSC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHHHc
Confidence 135776555555555432 669999999988764
No 66
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.24 E-value=1.5e-11 Score=110.50 Aligned_cols=151 Identities=6% Similarity=-0.017 Sum_probs=85.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc-----------------------CCcceechhHHHHHhcCchhhhhhccCcHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAKQTIDSWMLAEGSDS 240 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L-----------------------G~~fID~D~lIE~~~g~sI~eif~~~Ge~~ 240 (388)
.+++.|+|+|++||||||+++.|++.+ +|.|++.|.+.+...+..+.++....|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 467899999999999999999999998 345666676655444332322222222222
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc--CCcEEEEE-cCccc-------cccCHHHHHHHH-HHHh
Q 016486 241 VVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLS-QTEAM-------DENSAKEEARRH-VKDG 309 (388)
Q Consensus 241 FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~--~g~VVyLd-~~~e~-------D~~d~~e~l~~l-~~eR 309 (388)
+... +.++.+...+..||..+.- +|. ...++.+. ..++|||+ ++.++ .+.+..+.+.++ ...|
T Consensus 90 ~~~~--~~i~~~l~~g~~vi~d~~~-~~~---~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~ 163 (204)
T 2qor_A 90 GTLK--SEYDLAVGEGKICLFEMNI-NGV---KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELT 163 (204)
T ss_dssp EEEH--HHHHHHHHTTCEEEEECCH-HHH---HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred cCCH--HHHHHHHHcCCeEEEEECH-HHH---HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1111 1233333344555543310 000 11122222 34799999 77766 122223455543 3345
Q ss_pred Hhc---ccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 310 KLG---YSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 310 ~~~---Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
.+. |.. +|++|.++ + +++++++|.+.|+..+
T Consensus 164 ~~~~~~~~~~~d~vi~n~--~---~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 164 REMDEADKVGFNYFIVND--D---LARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHHHHHTCSEEEECS--S---HHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhccCcEEEECc--C---HHHHHHHHHHHHHHHh
Confidence 444 544 99988765 3 5699999999988654
No 67
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.23 E-value=1.1e-10 Score=108.62 Aligned_cols=148 Identities=12% Similarity=0.067 Sum_probs=94.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHHHH---------------------
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV--------------------- 242 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~FR--------------------- 242 (388)
..|-|+|.+|||||||++.|++ +|+++||+|.+..+.. +..+.++++..|++.|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 3589999999999999999999 9999999999987766 34677777777766542
Q ss_pred -HHHH--------HHHHHHhc-CCCeEEEecCCcccccccH-HHHHhhcCCcEEEEEcCccc--------cccCHHHHHH
Q 016486 243 -NGEC--------DVLESLSS-HVRAVVATLGGQQGAAARA-DKWQHLYAGFTVWLSQTEAM--------DENSAKEEAR 303 (388)
Q Consensus 243 -e~E~--------~vL~~L~~-~~~~VVStGGG~~gav~r~-enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~ 303 (388)
++|. ++.+.+.. ...+||.-.. .+-+ ..+..+ -+.+||+++|+++ |+-+ .+.+.
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~p-----LL~E~~~~~~~-~D~vi~V~ap~e~r~~Rl~~Rdg~s-~eea~ 161 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVVP-----LLVESRNWKAR-CDRVLVVDCPVDTQIARVMQRNGFT-REQVE 161 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECT-----TCTTCHHHHHH-CSEEEEEECCHHHHHHHHHHHHCCC-HHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEe-----cccccCCcccc-CCeEEEEECCHHHHHHHHHhcCCCC-HHHHH
Confidence 1111 11222222 2345555442 3333 344332 3789999999987 2222 34444
Q ss_pred HHHHHh---HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486 304 RHVKDG---KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLI 345 (388)
Q Consensus 304 ~l~~eR---~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~ 345 (388)
+++... +..++.||++|++++.+ .+++.++|...++.++
T Consensus 162 ~ri~~Q~~~eek~~~AD~VIdN~~gs---le~l~~qV~~l~~~~~ 203 (210)
T 4i1u_A 162 AIIARQATREARLAAADDVIVNDAAT---PDALAVQVDALHQRYL 203 (210)
T ss_dssp HHHHHSCCHHHHHHTCSEEEECSSCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHhCCEEEECCCCC---HHHHHHHHHHHHHHHH
Confidence 444433 23445699999988223 3477777766666554
No 68
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.22 E-value=1.6e-11 Score=109.26 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=31.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+++.|+|+|++||||||+++.|++.|+..++++|
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 45789999999999999999999999998888774
No 69
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.22 E-value=3.3e-11 Score=105.86 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=78.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhhhccCcHH------HHHHHHHHHHHH---hcC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSDS------VVNGECDVLESL---SSH 255 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif~~~Ge~~------FRe~E~~vL~~L---~~~ 255 (388)
.|+|+|++||||||+++.|++.| |++++.++.......|..+.+++....... |.....+.++++ ...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~~ 81 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999 999998765322222222333332111110 100001111222 223
Q ss_pred CCeEEEe----------cCCcccccccHHHHHhh--------cCCcEEEEEcCccc--------cccC---HHHHHHHHH
Q 016486 256 VRAVVAT----------LGGQQGAAARADKWQHL--------YAGFTVWLSQTEAM--------DENS---AKEEARRHV 306 (388)
Q Consensus 256 ~~~VVSt----------GGG~~gav~r~enr~~L--------~~g~VVyLd~~~e~--------D~~d---~~e~l~~l~ 306 (388)
+..||+. |++ .....+....+ ..+.+|||++|+++ +..+ ..+++...|
T Consensus 82 g~~vi~dr~~~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~ 158 (197)
T 2z0h_A 82 GYAVLLDRYTDSSVAYQGFG---RNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGY 158 (197)
T ss_dssp -CEEEEESCHHHHHHHTTTT---TCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHHHHHHHH
T ss_pred CCEEEECCChhHHHHHHHhc---cCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 4566664 333 12333322222 23779999999987 1111 122222333
Q ss_pred HHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 307 KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 307 ~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
.+....|....++|+.++ + +++++++|...++.++.
T Consensus 159 ~~~~~~~~~~~~~Id~~~-~---~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 159 LVLAREHPERIVVLDGKR-S---IEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHCTTTEEEEETTS-C---HHHHHHHHHHHTTCC--
T ss_pred HHHHHhCCCCEEEEeCCC-C---HHHHHHHHHHHHHHHhc
Confidence 333333322335677553 3 56999999888876543
No 70
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.19 E-value=3.7e-11 Score=124.64 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcce-----echhHHHHHhcC-chhhhhhccCcHHHHHHHHHHHHHH------h
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL-----STKELLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL------S 253 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-----D~D~lIE~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~L------~ 253 (388)
+..|+|+|+|||||||+|+.||+.|++.++ +.|+++++..+. .+.++|...+++.|+..|..++..+ .
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L 114 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL 114 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999987775 459999988876 4678998889999886665443322 1
Q ss_pred --cCCCeEE--EecCCcccccccHHHHHhhcC-Cc-EEEEEcCc
Q 016486 254 --SHVRAVV--ATLGGQQGAAARADKWQHLYA-GF-TVWLSQTE 291 (388)
Q Consensus 254 --~~~~~VV--StGGG~~gav~r~enr~~L~~-g~-VVyLd~~~ 291 (388)
..+..|| +|+++ ...+..+++.++. |+ ++||++..
T Consensus 115 ~~~~g~~VIvDat~~~---~~~R~~~~~~a~~~g~~v~~l~~~~ 155 (520)
T 2axn_A 115 AKEGGQIAVFDATNTT---RERRHMILHFAKENDFKAFFIESVC 155 (520)
T ss_dssp HHSCCCEEEEESCCCS---HHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HhcCCceEEecCCCCC---HHHHHHHHHHHHHcCCeEEEEEEeC
Confidence 3445555 55655 4667676676664 64 67777653
No 71
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.18 E-value=2.6e-11 Score=127.35 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=90.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC----Cc--ceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR 257 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~--fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~ 257 (388)
+++.|+|+|++||||||+|+.|+++|+ ++ ++|+|.+.....+. ..|. .+..+.++.+ .++++.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~---~~f~~~er~~~i~ri-~~v~~~~~~~g~ 470 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSE---LGFTREDRHTNIQRI-AFVATELTRAGA 470 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTT---CCCSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccc---cCCChhHHHHHHHHH-HHHHHHHHhCCC
Confidence 467899999999999999999999987 44 55566643321111 1111 1111122222 235555655566
Q ss_pred eEEEecCC-cccccccHHHHHhhcC-C--cEEEEEcCccc----cccCHHH-----HHHHHHHHhHhccc--cCcEEEEc
Q 016486 258 AVVATLGG-QQGAAARADKWQHLYA-G--FTVWLSQTEAM----DENSAKE-----EARRHVKDGKLGYS--NADVVVKL 322 (388)
Q Consensus 258 ~VVStGGG-~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~~d~~e-----~l~~l~~eR~~~Y~--~AD~vV~~ 322 (388)
.||++.-. . ...+..+++.+.. + ++|||++|+++ +.....+ .+..++..|.++|. .+|++|++
T Consensus 471 ~VI~~~is~~--~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt 548 (573)
T 1m8p_A 471 AVIAAPIAPY--EESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF 548 (573)
T ss_dssp EEEEECCCCC--HHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT
T ss_pred EEEEEcCCCc--HHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC
Confidence 67765321 0 0123455556665 5 79999999876 2111111 12223345667775 48899998
Q ss_pred CCCCcccHHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~~ 343 (388)
++.++ ++++++|+..|+.
T Consensus 549 s~~s~---eevv~~Il~~l~~ 566 (573)
T 1m8p_A 549 SKQSV---RSIVHEIILVLES 566 (573)
T ss_dssp TTSCH---HHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHh
Confidence 88765 4999999988864
No 72
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.18 E-value=1.4e-10 Score=107.95 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~ 225 (388)
+++.|+|+|++||||||+++.|++.+|++++++|+++.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~ 68 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAA 68 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHH
Confidence 57899999999999999999999999999999999988753
No 73
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.18 E-value=3.2e-10 Score=100.27 Aligned_cols=34 Identities=21% Similarity=0.020 Sum_probs=29.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCc--ceec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLST 217 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~ 217 (388)
++++.|+|+|++||||||+++.||+.|+.. ++.+
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 457889999999999999999999999874 6654
No 74
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.14 E-value=2.7e-10 Score=104.85 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=87.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV 260 (388)
|.|+|+|+|||||+|+|+.||+.+|+++|++.+++.+... ..+.+++. .|+--=.++-..++..-......+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYME-RGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHh-cCCcCCHHHHHHHHHHhhccCCceE
Confidence 5799999999999999999999999999999999876542 12222222 2332112222333333333333455
Q ss_pred EecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc----------c-----------------------ccCH
Q 016486 261 ATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM----------D-----------------------ENSA 298 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~----------D-----------------------~~d~ 298 (388)
-.|- +......+.| . -..||+|++|.++ + .++.
T Consensus 80 lDGf-----PRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~ 154 (206)
T 3sr0_A 80 FDGF-----PRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDK 154 (206)
T ss_dssp EESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGS
T ss_pred ecCC-----chhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCC
Confidence 4552 3333322222 2 1569999999876 0 0122
Q ss_pred HHHHHHHHHHh-------HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 299 KEEARRHVKDG-------KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 299 ~e~l~~l~~eR-------~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
.+.++++++.- ..+|++....+.+++..+ +++|.++|.+.|.+
T Consensus 155 ~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~--~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 155 PEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKP--VEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSC--HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHcc
Confidence 34444444332 235766555555555433 56999999888753
No 75
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.14 E-value=1.1e-10 Score=109.00 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=74.0
Q ss_pred hHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhH---------HHHHhcCchhhhhhccCcHHH
Q 016486 173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKEL---------LETFAKQTIDSWMLAEGSDSV 241 (388)
Q Consensus 173 W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~l---------IE~~~g~sI~eif~~~Ge~~F 241 (388)
|..+..+.....++..|+|+|+|||||||+++.|++.++ +.++|+|.+ +.+..|..+.+++.. .+
T Consensus 19 ~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~----~~ 94 (253)
T 2p5t_B 19 LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD----FA 94 (253)
T ss_dssp HHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH----HH
T ss_pred HHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH----HH
Confidence 333333333444578899999999999999999999997 678899987 444456666555442 23
Q ss_pred HHHHHHHHHHHhcCC-CeEEEecCCcccccccHHHHHhhcC-Cc---EEEEEcCcc
Q 016486 242 VNGECDVLESLSSHV-RAVVATLGGQQGAAARADKWQHLYA-GF---TVWLSQTEA 292 (388)
Q Consensus 242 Re~E~~vL~~L~~~~-~~VVStGGG~~gav~r~enr~~L~~-g~---VVyLd~~~e 292 (388)
+++...+++.+...+ .+||.++++. ...+..+++.++. |. +|||++|++
T Consensus 95 ~~~~~~~~~~~~~~g~~vVid~~~~~--~~~~~~~~~~l~~~g~~v~lv~l~~~~e 148 (253)
T 2p5t_B 95 GKMVESLVTKLSSLGYNLLIEGTLRT--VDVPKKTAQLLKNKGYEVQLALIATKPE 148 (253)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTS--SHHHHHHHHHHHHTTCEEEEEEECCCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCC--HHHHHHHHHHHHHCCCcEEEEEEeCCHH
Confidence 444456666665543 6777655442 3345566666663 55 456677664
No 76
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.13 E-value=9.7e-11 Score=103.28 Aligned_cols=147 Identities=8% Similarity=-0.077 Sum_probs=83.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCC-cceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCC-CeEEEe
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGY-TPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHV-RAVVAT 262 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~-~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~-~~VVSt 262 (388)
+..|+|+|++||||||+++.|+..++. .++++|++.+......+.++.. ......++.++.. +....... .+|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence 457899999999999999999998875 8999998865432222223221 1111233333332 22222233 344443
Q ss_pred cCCcccccccHHHHHhhc------CCcEEEEEcCccc----------cc-cCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486 263 LGGQQGAAARADKWQHLY------AGFTVWLSQTEAM----------DE-NSAKEEARRHVKDGKLGYSNADVVVKLQGW 325 (388)
Q Consensus 263 GGG~~gav~r~enr~~L~------~g~VVyLd~~~e~----------D~-~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~ 325 (388)
..+ .......+++++ +..+|||+++++. |. -++ +.+.. ++++...|...+.+|+++..
T Consensus 81 ~~~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~~~~~~~~~~~~~ii~tsh~ 155 (189)
T 2bdt_A 81 IAF---PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-VEEFESKGIDERYFYNTSHL 155 (189)
T ss_dssp CCC---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-HHHHHHTTCCTTSEEECSSS
T ss_pred ccC---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-HHHHhhcCCCccEEEeCCCC
Confidence 222 122222234432 1347889988877 11 111 23444 67777777767788888876
Q ss_pred CcccHHHHHHHHH
Q 016486 326 DADHAKSVAQASL 338 (388)
Q Consensus 326 s~e~~eeVa~eIl 338 (388)
+.+.+++++++|+
T Consensus 156 ~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 156 QPTNLNDIVKNLK 168 (189)
T ss_dssp CGGGHHHHHHHHH
T ss_pred ChhhHHHHHHHHh
Confidence 2222568888777
No 77
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.13 E-value=9.7e-11 Score=102.80 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=90.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCc--ceechhHHHHHhcCchhhhhhccCcHHHHHHHH--HHHHHHhcCCCe
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC--DVLESLSSHVRA 258 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~--~vL~~L~~~~~~ 258 (388)
..+|..|+|+|++||||||+++.||..++.. ++|+|++.+......+..++.+.++....-.|. .........+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 85 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYF 85 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCe
Confidence 3457899999999999999999999988766 889998865433333333433322211111111 111112222333
Q ss_pred EEEecCCcccccccHHHHHhh---cC-CcEEEEEcCccc--------cc---cCHHHHHHHHHHHhHhccccCcEEEEcC
Q 016486 259 VVATLGGQQGAAARADKWQHL---YA-GFTVWLSQTEAM--------DE---NSAKEEARRHVKDGKLGYSNADVVVKLQ 323 (388)
Q Consensus 259 VVStGGG~~gav~r~enr~~L---~~-g~VVyLd~~~e~--------D~---~d~~e~l~~l~~eR~~~Y~~AD~vV~~d 323 (388)
++..+ +.....+..+ .. ..++++..+.+. +. .+ .+.+.++++.+.+.|..++++|+++
T Consensus 86 ~~~~~------~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld-~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 86 VILDG------VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD-PLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp EEECS------CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC-HHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred EEEec------cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCC-HHHHHHHHHHHhccCcccccEEECC
Confidence 44333 1111122222 22 347888888765 11 13 3567778888888887677889988
Q ss_pred CCCcccHHHHHHHHHHHHHH
Q 016486 324 GWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 324 ~~s~e~~eeVa~eIl~~L~~ 343 (388)
+.+++ +++++|+..++.
T Consensus 159 ~~~~~---~~~~~i~~~l~~ 175 (191)
T 1zp6_A 159 GKDTD---QALQSAINALQS 175 (191)
T ss_dssp TCCTT---TTTTTTHHHHHH
T ss_pred CCCHH---HHHHHHHHHHHh
Confidence 76665 888888888764
No 78
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.09 E-value=7.6e-10 Score=104.26 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=87.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhh------hhhc----------------c
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDS------WMLA----------------E 236 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~e------if~~----------------~ 236 (388)
++..|+|+|++||||||+++.||+.||+.++|+|.++.... |.++.+ +... .
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 46789999999999999999999999999999999976543 332221 1110 0
Q ss_pred C---------------------cHHHHHHHHHHHHHHhcC-CCeEEEec--CCcccccccHHHHHhhcCCcEEEEEcCcc
Q 016486 237 G---------------------SDSVVNGECDVLESLSSH-VRAVVATL--GGQQGAAARADKWQHLYAGFTVWLSQTEA 292 (388)
Q Consensus 237 G---------------------e~~FRe~E~~vL~~L~~~-~~~VVStG--GG~~gav~r~enr~~L~~g~VVyLd~~~e 292 (388)
| ....|+.-.+..+.+... +.+|+ -| .| .+.-++ ..+.|||++|++
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~-~GRd~g---t~V~pd------a~lkifl~A~~e 157 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVV-EGRDIG---TVVLPD------ADVKIFLTASAE 157 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEE-EESSCC---CCCCTT------CSEEEEEECCHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEE-ecccce---eEEcCC------CCEEEEEECCHH
Confidence 0 112233323334445554 44444 33 22 122221 368999999998
Q ss_pred cc-----------c-cCHHHHHHHHHHHhH----hcc----ccCc--EEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486 293 MD-----------E-NSAKEEARRHVKDGK----LGY----SNAD--VVVKLQGWDADHAKSVAQASLSALKQL 344 (388)
Q Consensus 293 ~D-----------~-~d~~e~l~~l~~eR~----~~Y----~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~~ 344 (388)
+- + ....+.+.+.+.+|. ..| ..++ ++|++++++++ ++++.|+..++..
T Consensus 158 ~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~ie---e~v~~I~~~i~~~ 228 (233)
T 3r20_A 158 ERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQA---QVIAHLLDLVTAQ 228 (233)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHH---HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHH---HHHHHHHHHHHHh
Confidence 70 1 111333444444443 223 2344 99999999865 9999988887654
No 79
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.08 E-value=1.2e-10 Score=121.66 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=93.6
Q ss_pred hhhHHhhhhhhh-ccCCCeEEEEecCCCchHHHHHHHHHhcCC-----cceechhHHHHHhcCchhhhhhcc-CcHHHHH
Q 016486 171 ESWESLTAGSMQ-LLKGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQTIDSWMLAE-GSDSVVN 243 (388)
Q Consensus 171 ~~W~sl~~~~~~-~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~-----~fID~D~lIE~~~g~sI~eif~~~-Ge~~FRe 243 (388)
+.|..+.+...+ ...+..|+|+|++||||||+|+.|++.|+. .++|+|.+.+...+. ..|... ....++.
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~---~~f~~~er~~~l~~ 432 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG---LGFSKEDRITNILR 432 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT---CCSSHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc---ccccHHHHHHHHHH
Confidence 356666654422 123678999999999999999999999974 889999865443221 112110 1111121
Q ss_pred HHHHHHHHHhcCCCeEEEecCC-cccccccHHHHHhhcC-C-cEEEEEcCccc----ccc-----CHHHHHHHHHHHhHh
Q 016486 244 GECDVLESLSSHVRAVVATLGG-QQGAAARADKWQHLYA-G-FTVWLSQTEAM----DEN-----SAKEEARRHVKDGKL 311 (388)
Q Consensus 244 ~E~~vL~~L~~~~~~VVStGGG-~~gav~r~enr~~L~~-g-~VVyLd~~~e~----D~~-----d~~e~l~~l~~eR~~ 311 (388)
+. ++.+.+.+.+..||..+.- + -..+..+++.+.+ + ++|||++|.++ ... +..+.+..++..|.+
T Consensus 433 i~-~~~~~~l~~G~~VI~d~~~~~--~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~ 509 (546)
T 2gks_A 433 VG-FVASEIVKHNGVVICALVSPY--RSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDP 509 (546)
T ss_dssp HH-HHHHHHHHTTCEEEEECCCCC--HHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBC
T ss_pred HH-HHHHHHHhCCCEEEEEcCCCC--HHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhc
Confidence 11 2333444445556655321 0 0112233444443 5 79999999987 111 111233334445556
Q ss_pred ccc--cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 312 GYS--NADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 312 ~Y~--~AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+|. .+|++|++++.++ ++++++|+..|+.
T Consensus 510 ~e~~~~adivIDts~~s~---eev~~~I~~~L~~ 540 (546)
T 2gks_A 510 YEPPVAPEVRVDTTKLTP---EESALKILEFLKK 540 (546)
T ss_dssp CCCCSSCSEEEETTTSCH---HHHHHHHHHHHHH
T ss_pred cccccCCcEEEECCCCCH---HHHHHHHHHHHHH
Confidence 664 3899999987665 4999999988864
No 80
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=99.07 E-value=2.1e-10 Score=119.31 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=83.0
Q ss_pred hhhHHhhhhhh-hccCCCeEEEEecCCCchHHHHHHHHHhcCC-------cceechhHHHHHhcCchhhhhhccCcHHHH
Q 016486 171 ESWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKELLETFAKQTIDSWMLAEGSDSVV 242 (388)
Q Consensus 171 ~~W~sl~~~~~-~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fID~D~lIE~~~g~sI~eif~~~Ge~~FR 242 (388)
+.|..+..... ...++..|+|+|+|||||||||++||++|+. .|+|+|. . ++ .
T Consensus 379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~--------------~e--i- 439 (511)
T 1g8f_A 379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K--------------TE--L- 439 (511)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C--------------HH--H-
T ss_pred hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c--------------HH--H-
Confidence 45666665432 2335789999999999999999999999997 7999998 0 00 1
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccccccCHHHHHHHHHHHhHhccccCcEEEEc
Q 016486 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKL 322 (388)
Q Consensus 243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD~vV~~ 322 (388)
..++..+.+.+..||++-- .. ..+|+.++++.+++|. .|..++++|++
T Consensus 440 ---~~va~~~~~~G~~Vv~~~~-----sp-~~~R~~l~~g~fv~v~-----------------------~p~~adI~IDT 487 (511)
T 1g8f_A 440 ---LSLIQDFIGSGSGLIIPDQ-----WE-DDKDSVVGKQNVYLLD-----------------------TSSSADIQLES 487 (511)
T ss_dssp ---HTTHHHHHHTTCEEEESSC-----CC-GGGGGGSCCTTEEEEE-----------------------SSTTCSEECSS
T ss_pred ---HHHHHHHHhcCCeEEEecC-----CH-HHHHHHhcCCCEEEEe-----------------------cCCCCcEEEEC
Confidence 1123344444455555431 11 4678888777777775 35567899988
Q ss_pred CCCCcccHHHHHHHHHHHHHH
Q 016486 323 QGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 323 d~~s~e~~eeVa~eIl~~L~~ 343 (388)
+..++ ++++++|++.|+.
T Consensus 488 s~~s~---eevV~~Il~~L~~ 505 (511)
T 1g8f_A 488 ADEPI---SHIVQKVVLFLED 505 (511)
T ss_dssp TTCCH---HHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHh
Confidence 87765 4999999998864
No 81
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.06 E-value=2.7e-10 Score=106.91 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=66.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc--------------------hhhhhh-ccCcHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWML-AEGSDSVVNGE 245 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s--------------------I~eif~-~~Ge~~FRe~E 245 (388)
+.|+|+|++||||||+|+.||+.+++.++++|.++... +++ ..++++ ..+...|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~-~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCP-QIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCG-GGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccC-CCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence 36899999999999999999999999999999976321 111 011122 35667888888
Q ss_pred HHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-----CC---cEEEEEcCc-cc
Q 016486 246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTE-AM 293 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-----~g---~VVyLd~~~-e~ 293 (388)
...+ ++...+..||.+||+. ... ...+. .+ .+|||++|. +.
T Consensus 81 ~~~i-~~~~~g~~vIl~gg~~---~~~---~~~~~~~~~~~~~~~~~i~l~~~~~e~ 130 (253)
T 2ze6_A 81 IFEV-DWRKSEEGLILEGGSI---SLL---NCMAKSPFWRSGFQWHVKRLRLGDSDA 130 (253)
T ss_dssp HHHH-HTTTTSSEEEEEECCH---HHH---HHHHHCTTTTSSCEEEEEECCCCCHHH
T ss_pred HHHH-HHHhCCCCeEEeccHH---HHH---HHHHhcccccccCceEEEEecchhHHH
Confidence 7777 6665555666665541 211 22222 22 689999987 43
No 82
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.03 E-value=8.1e-10 Score=98.87 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCch-h------hhhhccCcHHHHHHHHHHHHHHh---
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-D------SWMLAEGSDSVVNGECDVLESLS--- 253 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI-~------eif~~~Ge~~FRe~E~~vL~~L~--- 253 (388)
++..|.|+|++||||||+++.|++.+ ++.+++.|.++........ . ++........+.+.-...+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 99 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSV 99 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCC
Confidence 35678999999999999999999999 8999999998643221111 0 01111111222221122222211
Q ss_pred --------cCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc----------cccCHH----HHHHHHHHHhH
Q 016486 254 --------SHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM----------DENSAK----EEARRHVKDGK 310 (388)
Q Consensus 254 --------~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~----------D~~d~~----e~l~~l~~eR~ 310 (388)
.....||.+|.. ... ....... +.+|||+++.+. +.+... +.....|.++.
T Consensus 100 ~~~~~~~~~~~~~vi~eg~~-----~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~ 173 (207)
T 2qt1_A 100 VSTDQESAEEIPILIIEGFL-----LFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYR 173 (207)
T ss_dssp CCC-----CCCCEEEEECTT-----CTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHH
T ss_pred cCCCeeecCCCCEEEEeehH-----HcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHH
Confidence 123578888743 211 1122222 789999999876 011111 12223344444
Q ss_pred hcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486 311 LGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ 343 (388)
Q Consensus 311 ~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~ 343 (388)
..|.. +|.++.+++..+ ++++.++|.+.++.
T Consensus 174 ~~~~~~~~~v~~Id~~~~--~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 174 QEMQDITWEVVYLDGTKS--EEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHGGGCSSCCEEEETTSC--HHHHHHHHHHHHTT
T ss_pred HHHHhcCCeEEEecCCCC--HHHHHHHHHHHHHh
Confidence 55555 776644443322 56999988888764
No 83
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.00 E-value=2.2e-09 Score=102.82 Aligned_cols=111 Identities=9% Similarity=0.046 Sum_probs=67.4
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHhcC-----chhhhhhccCcHHHHHHHHHHHHHHh
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQ-----TIDSWMLAEGSDSVVNGECDVLESLS 253 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~g~-----sI~eif~~~Ge~~FRe~E~~vL~~L~ 253 (388)
.+..++..|+|+|+|||||||+++.|++.+ ++.+||+|.+.....+. ...++.......++..+...+++.+.
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l 107 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLS 107 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHH
Confidence 344467889999999999999999999999 89999999875332110 01111111112345555555555554
Q ss_pred c-CCCeEEEecCCcccccccHHHHHhhcC-Cc---EEEEEcCccc
Q 016486 254 S-HVRAVVATLGGQQGAAARADKWQHLYA-GF---TVWLSQTEAM 293 (388)
Q Consensus 254 ~-~~~~VVStGGG~~gav~r~enr~~L~~-g~---VVyLd~~~e~ 293 (388)
. ...+|+.+..+ +...+...++.++. |+ ++|+.+|++.
T Consensus 108 ~~g~~vIld~~~~--~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~ 150 (287)
T 1gvn_B 108 DQGYNLVIEGTGR--TTDVPIQTATMLQAKGYETKMYVMAVPKIN 150 (287)
T ss_dssp HHTCCEEECCCCC--CSHHHHHHHHHHHTTTCEEEEEEECCCHHH
T ss_pred hcCCeEEEECCCC--CHHHHHHHHHHHHhCCCcEEEEEEECCHHH
Confidence 3 34566654432 12223455556654 43 6888888864
No 84
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.00 E-value=2.4e-09 Score=98.87 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~ 223 (388)
++..|+|+|++||||||+++.||+.+|+..++.|+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 467899999999999999999999999999999888765
No 85
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.00 E-value=7.2e-11 Score=120.05 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechh-----HHHHHhcC-chhhhhhccCcHHHHHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE-----LLETFAKQ-TIDSWMLAEGSDSVVNGECDVLES 251 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~-----lIE~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~ 251 (388)
++..|+|+|+|||||||+|+.||+.|++.++|+|. +.++..|. ...++|+..|++.|+..|..++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999988888765 66777776 456889999998887777654433
No 86
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.99 E-value=2.4e-10 Score=112.72 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=66.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc--------------------hhhhhhccCcHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWMLAEGSDSVVNGEC 246 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s--------------------I~eif~~~Ge~~FRe~E~ 246 (388)
+.|+|+|++||||||+|+.||+.++..+|++|.++... |++ +.+++...++..|++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~ 84 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL 84 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence 47999999999999999999999999999999985432 333 345567788999999999
Q ss_pred HHHHHHhcCCCeEEEecCC
Q 016486 247 DVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 247 ~vL~~L~~~~~~VVStGGG 265 (388)
++++++...+..||.+||+
T Consensus 85 ~~i~~i~~~g~~~IlvGGt 103 (323)
T 3crm_A 85 AAMAKATARGRIPLLVGGT 103 (323)
T ss_dssp HHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHcCCeEEEECCc
Confidence 9999998878889999987
No 87
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.98 E-value=1.6e-09 Score=102.14 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHH-HhcC--
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSSH-- 255 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~-- 255 (388)
..+++-|+|++||||||+++.||+.+|+++|++|+++.+.. |..+.+++.. |+....++...++++ +...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~-G~lvpdei~~~ll~~~l~~~~~ 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDE-GKLVPDSLIIGLVKERLKEADC 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHSGGG
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhh-ccccccHHHHHHHHHHHhCccc
Confidence 35789999999999999999999999999999999988752 3345555553 665555555555544 3221
Q ss_pred CCeEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc
Q 016486 256 VRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM 293 (388)
Q Consensus 256 ~~~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~ 293 (388)
.+.+|-.| + .......+.|. ...||||++|.++
T Consensus 86 ~~g~ILDG--f---PRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~ 123 (230)
T 3gmt_A 86 ANGYLFDG--F---PRTIAQADAMKEAGVAIDYVLEIDVPFSE 123 (230)
T ss_dssp TTCEEEES--C---CCSHHHHHHHHHTTCCCSEEEEECCCHHH
T ss_pred CCCeEecC--C---CCcHHHHHHHHHhCCCccEEEEEeCCHHH
Confidence 22344344 2 44444344443 2579999999875
No 88
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.97 E-value=4.6e-09 Score=97.42 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=82.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHHHHhcCchhhhhhccC---cH---H-HHHHHHH----HHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETFAKQTIDSWMLAEG---SD---S-VVNGECD----VLE 250 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE~~~g~sI~eif~~~G---e~---~-FRe~E~~----vL~ 250 (388)
.+|+.|+|+|++||||||+++.|++.|+ +.++.+..-.....|..+.+++.... .. . |.....+ ++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~ 103 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 103 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999996 56665532211112222333332211 00 0 1000000 111
Q ss_pred HHhcCCCeEEEe----------cCCcccccccHHHHHhh--------cCCcEEEEEcCccc-------cc---c--C---
Q 016486 251 SLSSHVRAVVAT----------LGGQQGAAARADKWQHL--------YAGFTVWLSQTEAM-------DE---N--S--- 297 (388)
Q Consensus 251 ~L~~~~~~VVSt----------GGG~~gav~r~enr~~L--------~~g~VVyLd~~~e~-------D~---~--d--- 297 (388)
.....+..||+. |++. -+..+.+..| ....+|||++|+++ .+ + +
T Consensus 104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r---~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~ 180 (229)
T 4eaq_A 104 PALKEGKVVLCDRYIDSSLAYQGYAR---GIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 180 (229)
T ss_dssp HHHHTTCEEEEECCHHHHCCCCCCCS---CSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred HHHHCCCEEEECCchhHHHHHHHhhc---CCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence 222345678887 7652 3333332222 23679999999987 00 0 1
Q ss_pred --HHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486 298 --AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQ 346 (388)
Q Consensus 298 --~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~ 346 (388)
..+++++.|.+....|...-++|+.++ + +++|+++|.+.|+.++.
T Consensus 181 ~~~~~rv~~~y~~l~~~~~~~~~vIDa~~-s---~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 181 LKFHEKVIEGYQEIIHNESQRFKSVNADQ-P---LENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEETTS-C---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCC-C---HHHHHHHHHHHHHHHhc
Confidence 111222222222222221224555543 3 56999999999988764
No 89
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.94 E-value=1.6e-09 Score=102.14 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=63.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCchhh--hhhccCcHHHHHHHHHHHHHHh---cCCCeEE
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLS---SHVRAVV 260 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI~e--if~~~Ge~~FRe~E~~vL~~L~---~~~~~VV 260 (388)
+.|+|+|++||||||+++.|++++ |+.++++|.+.+...+++... -+...++..+.+...+++.... ..+..||
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi 82 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI 82 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEE
Confidence 579999999999999999999985 999999998777665532210 1112233334333334444444 4445666
Q ss_pred EecCCcccccccHHHHHhh----c-CC---cEEEEEcCccc
Q 016486 261 ATLGGQQGAAARADKWQHL----Y-AG---FTVWLSQTEAM 293 (388)
Q Consensus 261 StGGG~~gav~r~enr~~L----~-~g---~VVyLd~~~e~ 293 (388)
..|.. .....++.+ . .+ .+|||++|.++
T Consensus 83 ~d~~~-----~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~ 118 (301)
T 1ltq_A 83 ISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTE 118 (301)
T ss_dssp ECSCC-----CCHHHHHHHHHHHHHTTCEEEEEECCCCHHH
T ss_pred EeCCC-----CCHHHHHHHHHHHHHcCCcEEEEEEECCHHH
Confidence 65533 333333322 2 13 69999998876
No 90
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.88 E-value=3e-09 Score=106.97 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG 264 (388)
++..|+|+|+|||||||+++.|++.+|+.+||.|.+- .++.+...+...+.....+||.+.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~~~ 318 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------------SWQRCVSSCQAALRQGKRVVIDNTN 318 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------------SHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------------HHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 4578999999999999999999999999999999961 2344445555555555566776554
Q ss_pred CcccccccHHHHHhhcC-C---cEEEEEcCccc
Q 016486 265 GQQGAAARADKWQHLYA-G---FTVWLSQTEAM 293 (388)
Q Consensus 265 G~~gav~r~enr~~L~~-g---~VVyLd~~~e~ 293 (388)
+. ...+...++.++. + .+|||+++.++
T Consensus 319 ~~--~~~r~~~~~~~~~~~~~~~~v~l~~~~e~ 349 (416)
T 3zvl_A 319 PD--VPSRARYIQCAKDAGVPCRCFNFCATIEQ 349 (416)
T ss_dssp CS--HHHHHHHHHHHHHHTCCEEEEEECCCHHH
T ss_pred CC--HHHHHHHHHHHHHcCCeEEEEEEeCCHHH
Confidence 42 2334444444443 3 58999888754
No 91
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.84 E-value=1.6e-10 Score=115.52 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcc--------------------eechhHHHHHhcCchhhhhhccCcHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTP--------------------LSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f--------------------ID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~ 246 (388)
.+|+|+|+|||||||+|+.||+.|+++| +|+|.+|++..|+++.++|++.|+ .||++|.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~if~~~ge-~fr~~E~ 103 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGL-FKDHVED 103 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHHHHTTTC-CGGGTTC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHHHHHhcc-cchHHHh
Confidence 4699999999999999999999999999 999999999999999999999999 9999998
Q ss_pred HHHHHH
Q 016486 247 DVLESL 252 (388)
Q Consensus 247 ~vL~~L 252 (388)
..++..
T Consensus 104 ~~~~~~ 109 (359)
T 2ga8_A 104 VNFQPV 109 (359)
T ss_dssp TTCCCE
T ss_pred hhcccc
Confidence 776443
No 92
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.75 E-value=7.3e-08 Score=88.92 Aligned_cols=157 Identities=17% Similarity=0.067 Sum_probs=81.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHHHhcCchhhhhhccC-----c---------HHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETFAKQTIDSWMLAEG-----S---------DSVVNGEC 246 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~~~g~sI~eif~~~G-----e---------~~FRe~E~ 246 (388)
++|+.|+|.|++||||||+++.|++.|+ +.++-+...-....|..+.+++.... . +.+..++.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~ 83 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG 83 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999984 55554422100001111222222110 0 11111222
Q ss_pred HHHHHHhcCCCeEEEe----------cCCcccccccHHHHH-------hhcCCcEEEEEcCccc-------c-ccC----
Q 016486 247 DVLESLSSHVRAVVAT----------LGGQQGAAARADKWQ-------HLYAGFTVWLSQTEAM-------D-ENS---- 297 (388)
Q Consensus 247 ~vL~~L~~~~~~VVSt----------GGG~~gav~r~enr~-------~L~~g~VVyLd~~~e~-------D-~~d---- 297 (388)
.+...+ ..+..||+. |+|. |. ..+.... .+....+|||++|+++ . ..+
T Consensus 84 ~i~p~l-~~g~~Vi~DRy~~S~~ayq~~~~-g~-~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~ 160 (213)
T 4edh_A 84 VIRPAL-ARGAVVLCDRFTDATYAYQGGGR-GL-PEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQ 160 (213)
T ss_dssp THHHHH-HTTCEEEEESCHHHHHHHTTTTT-CC-CHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTT
T ss_pred HHHHHH-HCCCEEEECccHhHHHHHhhhcc-CC-CHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccc
Confidence 222233 345677763 3321 11 1111111 1234789999999987 0 111
Q ss_pred ----HHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486 298 ----AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS 347 (388)
Q Consensus 298 ----~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~ 347 (388)
..+++++.|.+....|...-++|+.+. + +++|.++|.+.|..++.+
T Consensus 161 ~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~-s---~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 161 EDRRFFEAVRQTYLQRAAQAPERYQVLDAGL-P---LAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTTEEEEETTS-C---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCcEEEEeCCC-C---HHHHHHHHHHHHHHHHHh
Confidence 122333334333333332235566553 3 569999999999987753
No 93
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.70 E-value=1.1e-07 Score=89.08 Aligned_cols=28 Identities=14% Similarity=-0.003 Sum_probs=23.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+|+.|+|.|++||||||+++.|++.|+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999993
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.69 E-value=1.1e-07 Score=84.91 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE 222 (388)
++..|.|+|++||||||+++.|+..++ +.+++.|.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 567899999999999999999999999 99999988653
No 95
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.68 E-value=2.1e-08 Score=99.45 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=69.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCc-----hhhhhhccCcHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGECD 247 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~s-----I~eif~~~Ge~~FRe~E~~ 247 (388)
..|+|+|++||||||+|+.||+.++..+|++|.+ .++..+.+ +.+..+..+...|++.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 4799999999999999999999999999999997 22222221 2333345677789888888
Q ss_pred HHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEE-cCcc
Q 016486 248 VLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEA 292 (388)
Q Consensus 248 vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd-~~~e 292 (388)
.+..+...+..||.+||+ ..+. +.|..++.+|++ .+.+
T Consensus 88 ~i~~i~~~g~~~IlvGGt---~ly~----~~l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 88 YIKDITRRGKVPIIAGGT---GLYI----QSLLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHTTCEEEEECCC---HHHH----HHHHBCSCCC---CCHH
T ss_pred HHHHHHhCCCcEEEECCh---hhhH----HHHHhcccccCCCCChH
Confidence 888877667788888877 2332 233445557777 6654
No 96
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.66 E-value=7.9e-08 Score=84.86 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=24.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++|..|+|+|++||||||+.+.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999999876
No 97
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.62 E-value=2.4e-07 Score=84.79 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc--CCccee
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLS 216 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID 216 (388)
++-|+|.|..||||||+++.|++.| |++++-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 4579999999999999999999999 566554
No 98
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.62 E-value=1.9e-07 Score=84.36 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|..|+|+|++||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999999884
No 99
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.58 E-value=2.4e-07 Score=86.32 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=28.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc-CCccee
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS 216 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID 216 (388)
.+++.|+|.|++||||||+++.|++.| ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 356789999999999999999999999 677774
No 100
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.57 E-value=6e-07 Score=82.94 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=25.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
|+|+.|+|.|++||||||+++.|++.|.
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999983
No 101
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.54 E-value=1.3e-07 Score=88.33 Aligned_cols=30 Identities=17% Similarity=-0.129 Sum_probs=26.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
..+++.|+|.|++||||||+++.|++.|+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999999998754
No 102
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.53 E-value=1.5e-06 Score=81.61 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=25.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+++..|+|.|++||||||+++.|++.|+
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999999999984
No 103
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.53 E-value=4e-07 Score=82.69 Aligned_cols=31 Identities=19% Similarity=0.008 Sum_probs=26.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~ 217 (388)
+-|+|.|..||||||+++.|++.| |++++-+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 358999999999999999999998 6766643
No 104
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.45 E-value=1.1e-06 Score=81.61 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
+|+.|+|.|++||||||+++.|++.|+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5889999999999999999999999986
No 105
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.43 E-value=8e-07 Score=78.29 Aligned_cols=27 Identities=26% Similarity=0.127 Sum_probs=24.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..|+|+|++||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999999987
No 106
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=7.9e-07 Score=78.39 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|..|.|+|++||||||+.+.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999999763
No 107
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.41 E-value=9.1e-07 Score=81.32 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=26.7
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
++.++++.|+|+|++|||||||.+.|++.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5677899999999999999999999998764
No 108
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.37 E-value=4.1e-07 Score=83.42 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..|.|+|++||||||+.+.|+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~ 44 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYK 44 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999999883
No 109
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=3.1e-07 Score=78.53 Aligned_cols=93 Identities=13% Similarity=0.225 Sum_probs=81.8
Q ss_pred CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~ 158 (388)
..|.|.+...+|.|++.+++.+....+++.|+-..++|.|.+...++....++.+.||..|+|.|..|.+++..+.+.++
T Consensus 21 ~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L~ 100 (127)
T 1x5m_A 21 SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCR 100 (127)
T ss_dssp CSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEEE
T ss_pred cEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEEE
Confidence 47999999999999999997766688999999999999999876666667788889999999999999999999889999
Q ss_pred ccCCCCCCchhhh
Q 016486 159 KQDPELKWPDIVE 171 (388)
Q Consensus 159 ~~~~~~~wp~~~~ 171 (388)
+.+.+..||.+..
T Consensus 101 K~~~~~~W~~L~~ 113 (127)
T 1x5m_A 101 KKVENTRWDYLTQ 113 (127)
T ss_dssp CSSSSCCCSSSBH
T ss_pred ECCCCCCCCcccc
Confidence 9887668888843
No 110
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.27 E-value=1.6e-06 Score=81.97 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=29.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l 220 (388)
+.|.|+|.+||||||+++.|++.+|++.+...+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~ 35 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP 35 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence 3689999999999999999999999888875443
No 111
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.24 E-value=4.5e-06 Score=76.99 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc----------ceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~----------fID~D~l 220 (388)
++..|.|+|++||||||+++.|+..+|.. +++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 56789999999999999999999999866 6777764
No 112
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.21 E-value=2.3e-06 Score=84.37 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=59.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhhhhccCcHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGE 245 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~eif~~~Ge~~FRe~E 245 (388)
++..|+|+|++||||||++..||+.++..+|++|.+ -++..|. ++.++-+......|.+.-
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 456799999999999999999999999999999987 1222221 122222344556777777
Q ss_pred HHHHHHHhcCCCeEEEecCC
Q 016486 246 CDVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 246 ~~vL~~L~~~~~~VVStGGG 265 (388)
..+++.+.+.+..+|-+||-
T Consensus 82 ~~~i~~i~~~gk~pIlVGGT 101 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGT 101 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCC
T ss_pred HHHHHHHHhCCCcEEEEcCc
Confidence 77788887777777777764
No 113
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=1.7e-06 Score=76.42 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
++.|+|+|++||||||+.++|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998753
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=1.5e-06 Score=79.12 Aligned_cols=29 Identities=21% Similarity=0.008 Sum_probs=19.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHH-Hhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELA-VGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LA-k~L 210 (388)
...+|..|.|+|++||||||+.+.|+ ..+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34467899999999999999999999 665
No 115
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.07 E-value=6.9e-05 Score=68.57 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=26.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-CCcc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTP 214 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~f 214 (388)
+++.|+|.|++||||||+++.|++.| ++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 36789999999999999999999999 5543
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.05 E-value=3.5e-06 Score=75.76 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l 220 (388)
+|..|.|+|++||||||+++.|+..+. ..+|..|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 577899999999999999999999985 566777654
No 117
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.98 E-value=1.1e-05 Score=79.46 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=57.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC 246 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~ 246 (388)
+..|+|+|++||||||++..||+.++..+|+.|.+- ++..|. ++.++-+......|.+.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~ 89 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL 89 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH
Confidence 457999999999999999999999999999999851 222221 1222233445567777667
Q ss_pred HHHHHHhcCCCeEEEecCC
Q 016486 247 DVLESLSSHVRAVVATLGG 265 (388)
Q Consensus 247 ~vL~~L~~~~~~VVStGGG 265 (388)
..++++...+..+|-+||-
T Consensus 90 ~~i~~i~~~g~~pilVGGT 108 (316)
T 3foz_A 90 AEMADITAAGRIPLLVGGT 108 (316)
T ss_dssp HHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHhCCCcEEEEcCc
Confidence 7788887777777777764
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.96 E-value=1.2e-05 Score=72.08 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCc--ceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~lI 221 (388)
++..|.|+|++||||||+++.|+..+ |.. +++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 46789999999999999999999976 544 44557653
No 119
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.89 E-value=1.2e-05 Score=81.63 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=57.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceechhH--H------------HHHhcC-----chhhhhhccCcHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--L------------ETFAKQ-----TIDSWMLAEGSDSVVNGECD 247 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--I------------E~~~g~-----sI~eif~~~Ge~~FRe~E~~ 247 (388)
..|+|+|++||||||++..||+.++..+|++|.+ . ++..|. ++.++-+......|.+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 4689999999999999999999999999999984 1 111111 11222234455678887788
Q ss_pred HHHHHhcCCCeEEEecCC
Q 016486 248 VLESLSSHVRAVVATLGG 265 (388)
Q Consensus 248 vL~~L~~~~~~VVStGGG 265 (388)
+++.+...+..+|-+||-
T Consensus 83 ~i~~i~~~g~~pilVGGT 100 (409)
T 3eph_A 83 AIEDIHRRGKIPIVVGGT 100 (409)
T ss_dssp HHHHHHTTTCEEEEECSC
T ss_pred HHHHHHhcCCCEEEECCh
Confidence 888888777777767763
No 120
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=97.80 E-value=9.7e-06 Score=69.47 Aligned_cols=89 Identities=22% Similarity=0.459 Sum_probs=74.9
Q ss_pred CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHH
Q 016486 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVIN 156 (388)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~ 156 (388)
+..|.|+....||++++.++..+...++|+.|+-..++|.|.++ |. ..++ .+.||..|+|.|..|.+.+. .+.+.
T Consensus 7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k--g~-~~~~-~~~L~~~I~~e~s~w~i~~~k~v~i~ 82 (131)
T 1wfi_A 7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK--GQ-PPVV-DGELYNEVKVEESSWLIEDGKVVTVH 82 (131)
T ss_dssp CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET--TS-CCSB-CSCBSSCBCSTTCEEEEETTTEEEEE
T ss_pred CCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC--Cc-eEEE-ecccccccccccCEEEEcCCCEEEEE
Confidence 34899999999999999999887778999999999999999886 33 2444 46799999999999999887 57888
Q ss_pred hhccCCCCCCchhh
Q 016486 157 LKKQDPELKWPDIV 170 (388)
Q Consensus 157 ~~~~~~~~~wp~~~ 170 (388)
+++...+..||.+.
T Consensus 83 L~K~~~~~~W~~L~ 96 (131)
T 1wfi_A 83 LEKINKMEWWNRLV 96 (131)
T ss_dssp EEBSSSCCCCSCSB
T ss_pred EEECCCCCCChhhh
Confidence 88887666777774
No 121
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.79 E-value=9.4e-06 Score=69.00 Aligned_cols=89 Identities=20% Similarity=0.437 Sum_probs=72.8
Q ss_pred CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-HHHHh
Q 016486 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-LVINL 157 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~v~~~ 157 (388)
..|.|+....||++++.++.. +...+|+.|+-..++|.|.++..++...+++ +.||..|+|.|..|.+.+.. +.+.+
T Consensus 20 ~~y~W~Qt~~~V~i~I~lp~~-~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~e~S~w~i~~~k~v~i~L 97 (124)
T 1wgv_A 20 ENYTWSQDYTDLEVRVPVPKH-VVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVLVNL 97 (124)
T ss_dssp SSCEEEEETTEEEEEEECCTT-CCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEEEEE
T ss_pred CcEEEEEcccEEEEEEEcCCC-CCchhheEEEEEcCEEEEEEEccCCCceEEc-ccccCcCCCcCCEEEEeCCCEEEEEE
Confidence 479999999999999999865 4478999999999999999876445555665 67999999999999998876 77777
Q ss_pred hccCCCCCCchhh
Q 016486 158 KKQDPELKWPDIV 170 (388)
Q Consensus 158 ~~~~~~~~wp~~~ 170 (388)
++... ..||.+.
T Consensus 98 ~K~~~-~~W~~L~ 109 (124)
T 1wgv_A 98 SKVGE-YWWNAIL 109 (124)
T ss_dssp CBSSS-CCCSCSB
T ss_pred EECCC-CCCcCcc
Confidence 77753 4667663
No 122
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.76 E-value=0.00011 Score=66.59 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+.|+|+|++|+|||||.+.|.+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999998764
No 123
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.75 E-value=8e-05 Score=68.90 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHH-Hh---cCchhhhhh--ccCcHHHHHHHH---------
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLET-FA---KQTIDSWML--AEGSDSVVNGEC--------- 246 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~-~~---g~sI~eif~--~~Ge~~FRe~E~--------- 246 (388)
....|.|+|++||||+|+++.|.+.+| ++.+..-+.+.+ .+ |..+.+.+. .+-| .+|..-.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE-~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKE-AFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCS-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHH-HHHHHHHHHHHHHHhc
Confidence 346799999999999999999999885 677887776653 22 334333320 0011 1111110
Q ss_pred --HH-HHHHhc--CCCeEEEecCCcccccccHHHHHhhcC--C---cEEEEEcCccc---------cccCHHHHHHHHHH
Q 016486 247 --DV-LESLSS--HVRAVVATLGGQQGAAARADKWQHLYA--G---FTVWLSQTEAM---------DENSAKEEARRHVK 307 (388)
Q Consensus 247 --~v-L~~L~~--~~~~VVStGGG~~gav~r~enr~~L~~--g---~VVyLd~~~e~---------D~~d~~e~l~~l~~ 307 (388)
.+ ++.+.. ....||.+| +-++...+++++ | ++|.+.+++++ .+.+..+ .+
T Consensus 89 d~~~~~~~~~~~~~~~~vII~d------vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e-----sE 157 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSD------TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE-----SE 157 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECC------CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH-----HH
T ss_pred CchHHHHHHHHhcCCCcEEEeC------CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc-----cc
Confidence 00 111111 124677777 666767777764 2 36899988754 0111111 11
Q ss_pred HhHhccccCcEEEEcCCC
Q 016486 308 DGKLGYSNADVVVKLQGW 325 (388)
Q Consensus 308 eR~~~Y~~AD~vV~~d~~ 325 (388)
.--..|..+|++|.+++.
T Consensus 158 ~gL~~~~~~D~vI~Ndgt 175 (202)
T 3ch4_B 158 CGLDNFGDFDWVIENHGV 175 (202)
T ss_dssp HTTTTCCCCSEEEEECSC
T ss_pred cCCCCCCcCCEEEEeCCC
Confidence 111234569999999974
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=0.00017 Score=64.65 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|+.|+|+|++||||||+.+.|+..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999865
No 125
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.68 E-value=1.4e-05 Score=67.97 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=73.8
Q ss_pred CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHH
Q 016486 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVIN 156 (388)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~ 156 (388)
...|.|+....||++++.++..+....+|+.|+-..++|.|.++- ...++ .+.||..|+|.|..|.+++. .+.+.
T Consensus 16 ~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg---~~~~~-~g~L~~~I~~deS~w~i~~~~~i~i~ 91 (121)
T 3qor_A 16 LPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG---QPAII-DGELYNEVKVEESSWLIADGAVVTVH 91 (121)
T ss_dssp CSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT---SCCSE-EEEBSSCBCGGGCEEEEETTTEEEEE
T ss_pred CCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC---cceEE-eccccccccccccEEEEcCCCEEEEE
Confidence 347999999999999999998877788999999999999998763 23455 56799999999999999886 67788
Q ss_pred hhccCCCCCCchhh
Q 016486 157 LKKQDPELKWPDIV 170 (388)
Q Consensus 157 ~~~~~~~~~wp~~~ 170 (388)
+++...+..||.+.
T Consensus 92 L~K~~~~~~W~~L~ 105 (121)
T 3qor_A 92 LEKINKMEWWSRLV 105 (121)
T ss_dssp EEBSSSSCCCSCSB
T ss_pred EEECCCCCCChhhh
Confidence 88877766677663
No 126
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=97.63 E-value=1.3e-05 Score=71.26 Aligned_cols=88 Identities=19% Similarity=0.378 Sum_probs=72.2
Q ss_pred cCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-H
Q 016486 75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-L 153 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~ 153 (388)
++.+..|.|+....||++++.|+.. ..++||.|+-..++|.|.++ |. ++++ +.||..|+|.|..|.+.+.. +
T Consensus 10 ~~~~~~y~W~Qt~~eV~v~I~lp~~--~~~kdv~V~i~~~~L~v~~k--g~--~~l~-g~L~~~I~~eeS~w~i~~~k~v 82 (157)
T 2rh0_A 10 PCGTPWGQWYQTLEEVFIEVQVPPG--TRAQDIQCGLQSRHVALAVG--GR--EILK-GKLFDSTIADEGTWTLEDRKMV 82 (157)
T ss_dssp CEECSSEEEEECSSEEEEEEECCTT--CCGGGEEEEECSSEEEEEET--TE--EEEE-EEBSSCBCGGGCEEEEECCCEE
T ss_pred cCCCCcEEEEecCCEEEEEEECCCC--CcccceEEEEecCEEEEEEC--CE--EEEe-eccccccCccccEEEEcCCcEE
Confidence 3345689999999999999999865 46899999999999999886 43 4555 67999999999999998876 6
Q ss_pred HHHhhccCC--CCCCchh
Q 016486 154 VINLKKQDP--ELKWPDI 169 (388)
Q Consensus 154 v~~~~~~~~--~~~wp~~ 169 (388)
.+..++... +..||.+
T Consensus 83 ~I~L~K~~~~~~~~W~~L 100 (157)
T 2rh0_A 83 RIVLTKTKRDAANCWTSL 100 (157)
T ss_dssp EEEEEBSSCSTTCCCSEE
T ss_pred EEEEEEcCCCcCCcChhh
Confidence 777777765 5567776
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=0.00034 Score=64.47 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+|..++|+|++||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3688999999999999999999998764
No 128
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.49 E-value=2.6e-05 Score=74.84 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI 221 (388)
++..|.|.|++||||||+++.|++.|| +.+||+|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 356799999999999999999999998 7999999986
No 129
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.0002 Score=65.66 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+..|+|+|++|+||||+++.+|..++.+|+..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 467999999999999999999999999888765
No 130
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.42 E-value=7.6e-05 Score=76.40 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=37.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHHH-HhcCchhhhh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLET-FAKQTIDSWM 233 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE~-~~g~sI~eif 233 (388)
..+.+|+|+|++|+||||+++.||+.++++|+..|. +.+. ..|.....++
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l 100 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 100 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence 356789999999999999999999999999998774 3442 4454444443
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.35 E-value=0.0008 Score=61.15 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=24.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+.+.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999999876
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.34 E-value=0.00034 Score=60.74 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKELLETF 224 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~lIE~~ 224 (388)
++..++|+|++|+||||+++.++..+ | ..+++..++++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 47899999999999999999999887 4 4567777776554
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.34 E-value=0.00024 Score=67.60 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+..|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 457888899999999999999999999988764
No 134
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=97.24 E-value=0.00012 Score=57.95 Aligned_cols=85 Identities=19% Similarity=0.344 Sum_probs=71.8
Q ss_pred ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhc
Q 016486 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK 159 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~ 159 (388)
.|.|.....+|.+.+.+++. ..+|+.|+-.+++|.|.+...++..-.++. .||..|.|.+.-|.+.+..+.+.+++
T Consensus 4 ~~~W~Qt~~~V~v~i~~~~v---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K 79 (92)
T 2xcm_C 4 RHEYYQKPEEVVVTVFAKGI---PKQNVNIDFGEQILSVVIEVPGEDAYYLQP-RLFGKIIPDKCKYEVLSTKIEICLAK 79 (92)
T ss_dssp EEEEEEETTEEEEEEECCSC---CGGGEEEEECSSBEEEEECCTTSCCEEECC-BBSSCBCGGGCEEEECSSCEEEEEEB
T ss_pred cccEEeCCCEEEEEEEECCC---ChHHeEEEEECCEEEEEEEcCCCcEEEEee-EcCCccCchhEEEEEECCEEEEEEEc
Confidence 68999999999999998864 468999999999999998765555555555 79999999999999988888888888
Q ss_pred cCCCCCCchh
Q 016486 160 QDPELKWPDI 169 (388)
Q Consensus 160 ~~~~~~wp~~ 169 (388)
.+.+ .||.+
T Consensus 80 ~~~~-~W~~L 88 (92)
T 2xcm_C 80 ADII-TWASL 88 (92)
T ss_dssp SSSC-CCSCS
T ss_pred CCCC-cchhc
Confidence 8775 88876
No 135
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.20 E-value=0.00021 Score=69.37 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+.+|+|.|++|+|||++++.||+.++.+|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4678999999999999999999999999999865
No 136
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00039 Score=66.04 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK 226 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g 226 (388)
.+..|+|.|++|+|||++++.+|..++.+|+..+ ++..+..|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence 4678999999999999999999999999887654 55554444
No 137
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.14 E-value=0.00028 Score=64.07 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+..|+|.|++|+|||++++.+|+.++.+|+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 457899999999999999999999999888754
No 138
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.14 E-value=0.00021 Score=59.20 Aligned_cols=87 Identities=16% Similarity=0.329 Sum_probs=73.2
Q ss_pred CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~ 158 (388)
-.|.|.....+|.+.+.+++. ..+|+.|+-.+++|.|.+...++..-.++. .||..|.|.+.-|.+.+..+.+.++
T Consensus 10 ~~~~W~Qt~~~V~v~i~l~~v---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~~e~s~~~~~~~~l~i~L~ 85 (114)
T 1rl1_A 10 IKYDWYQTESQVVITLMIKNV---QKNDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPIIPEQSTFKVLSTKIEIKLK 85 (114)
T ss_dssp CCEEEEECSSEEEEEECCCSC---CGGGEEEECSSSCEEEEEECTTSSEEEEEE-CBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred CCccEEeCCCEEEEEEEeCCC---CHHHCEEEEEcCEEEEEEEeCCCcEEEEEe-eCCCcCCccccEEEEECCEEEEEEE
Confidence 469999999999999999953 568999999999999998766555555555 7999999999999998888888888
Q ss_pred ccCCCCCCchhh
Q 016486 159 KQDPELKWPDIV 170 (388)
Q Consensus 159 ~~~~~~~wp~~~ 170 (388)
+.+.+ .||.+.
T Consensus 86 K~~~~-~W~~L~ 96 (114)
T 1rl1_A 86 KPEAV-RWEKLE 96 (114)
T ss_dssp CSSCC-CCSSSB
T ss_pred cCCCC-cCcccc
Confidence 88775 788774
No 139
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.13 E-value=5.2e-05 Score=65.03 Aligned_cols=85 Identities=19% Similarity=0.431 Sum_probs=68.3
Q ss_pred CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHh
Q 016486 78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157 (388)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~ 157 (388)
+..|.|+....+|.+++.++.. ...+|+.|+-..++|.|.++ |.. +++ +.||..|+|.|..|.+.+..+.+.+
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~--~~~kdv~V~i~~~~l~v~~~--g~~--~~~-~~L~~~I~~e~S~w~i~~~kv~i~L 76 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGD--ADSSAIKIRMVGKKICVKNQ--GEI--VID-GELLHEVDVSSLWWVINGDVVDVNV 76 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC-----CCSCEEEEEETTEEEEEET--TEE--EEE-EEBSSCEEEEEEEEEEETTEEEEEE
T ss_pred CCcEEEEecCCEEEEEEECCCC--CCccceEEEEECCEEEEEEC--CEe--eEc-cccccccccccCEEEEeCCEEEEEE
Confidence 3589999999999999999755 46899999999999999885 443 444 7799999999999999888877888
Q ss_pred hccCCCCCCchhh
Q 016486 158 KKQDPELKWPDIV 170 (388)
Q Consensus 158 ~~~~~~~~wp~~~ 170 (388)
++. .+..||.+.
T Consensus 77 ~K~-~~~~W~~L~ 88 (131)
T 2o30_A 77 TKK-RNEWWDSLL 88 (131)
T ss_dssp EES-SCCCCSCSB
T ss_pred EEC-CCCCCcccc
Confidence 777 555677774
No 140
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.11 E-value=0.00029 Score=68.55 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+.+|+|+|++|+|||++++.||+.++.+|+..|
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 4568999999999999999999999999988765
No 141
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.05 E-value=0.00036 Score=64.57 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+..|+|.|++|+|||++++.+|+.++.+++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999888764
No 142
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.04 E-value=0.00038 Score=64.96 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+..|+|.|++|+||||+++.+|+.++.+|+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 367899999999999999999999999888754
No 143
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.99 E-value=0.00047 Score=63.94 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+.+|+|.|++|+|||++++.+|+.++.+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999887754
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.96 E-value=0.00044 Score=66.35 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=31.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL 220 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l 220 (388)
-++..|.|+|++||||||+++.|+..++ ..++++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3567899999999999999999999887 667777764
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00056 Score=57.65 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+.+|+|+|++|+|||++++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999997
No 146
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.91 E-value=0.00047 Score=63.89 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
...+|+|.|++|+|||++++.+|+.++.+|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 346899999999999999999999999998765
No 147
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.90 E-value=0.00082 Score=58.64 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=29.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
-+|..+.|+|++||||||+++.+. .|...++.|.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~ 42 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR 42 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence 357889999999999999999865 466777777654
No 148
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.89 E-value=0.00048 Score=58.34 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+.+|+|+|++|+|||++++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999998
No 149
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.89 E-value=0.00029 Score=62.19 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=23.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+.|+|+|++||||||+++.|++.|+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999985
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00057 Score=69.59 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||+|||++++++|..+|++|+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4577999999999999999999999999998764
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.83 E-value=0.00072 Score=57.30 Aligned_cols=31 Identities=13% Similarity=-0.103 Sum_probs=27.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCcce
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL 215 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fI 215 (388)
.+.+|+|.|.+|+|||++|+.+++.. +.+|+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 46789999999999999999999987 56665
No 152
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.00066 Score=69.28 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||||||.+|+++|..+|++|+..+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3678999999999999999999999999998753
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.82 E-value=0.00082 Score=61.49 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
..|+|+|++|+||||+++.++..++..++..+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 45999999999999999999999988777654
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00068 Score=69.22 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||||||++++++|..+|++|+..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 4578999999999999999999999999998753
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.81 E-value=0.00073 Score=64.68 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
....|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 3568999999999999999999999999888653
No 156
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.80 E-value=0.00034 Score=64.34 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 456999999999999999999999998887653
No 157
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.77 E-value=0.00082 Score=63.55 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=27.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
..|.|+|++||||||+++.||..++..++..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 4499999999999999999999999777654
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.00074 Score=68.45 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||+|||.+|+++|..+|++|+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 3578999999999999999999999999998753
No 159
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.0014 Score=67.54 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
++.|+|+|++|+||||+++.+|..++.+|+..+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 466999999999999999999999999998753
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.68 E-value=0.00096 Score=65.19 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 467999999999999999999999999887653
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.67 E-value=0.0011 Score=62.85 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
..+|+|.|++|+|||++++.+|+.++.+|+..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 4679999999999999999999999999877643
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.67 E-value=0.0011 Score=64.67 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
....|+|.|++|+|||++++.+|+.++.+|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999999999999988764
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.63 E-value=0.0012 Score=64.78 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+.+|+|.|++|+|||++++.+|+.++.+|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 357899999999999999999999999998865
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.62 E-value=0.0013 Score=61.22 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=28.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
..|+|+|++|+||||+++.|+..++..++..+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 44999999999999999999999988777654
No 165
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=63.61 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-CCccee
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS 216 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID 216 (388)
.++.|+|.|++|+|||++++.+|+.+ +.+|+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 34789999999999999999999999 777764
No 166
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.62 E-value=0.0013 Score=66.42 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC--Ccceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D 218 (388)
.+.+|+|.|++|+|||++++.+|+.+| ++|+..+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 457899999999999999999999999 8887755
No 167
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.61 E-value=0.001 Score=59.10 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTP 214 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f 214 (388)
+++.|+|++||||||+.+.|+..+++.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 4689999999999999999999998443
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.001 Score=58.72 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI 221 (388)
.+.+|+|.|++|+||||+++.+++.++ +.+++.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 468899999999999999999999875 3456665543
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.61 E-value=0.00063 Score=63.57 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+.+|+|.|++|+|||++++.+|+.++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999983
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.001 Score=68.68 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||+|||.+|+++|..++++|+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 4688999999999999999999999999998753
No 171
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.60 E-value=0.0013 Score=58.78 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
-+|..+.|+|++||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999998873
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.60 E-value=0.00093 Score=57.67 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
++..++|+|++|+||||+++.++..+ | ..+++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 68899999999999999999999987 6 44455443
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0022 Score=56.40 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=28.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCcc--eechhHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLE 222 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~f--ID~D~lIE 222 (388)
.+|+|.|++|+||||+++.++..+ +.++ ++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 789999999999999999999987 4443 45554443
No 174
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0013 Score=67.39 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|+||+|||.+|+++|..++++|+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 3578999999999999999999999999998754
No 175
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.47 E-value=0.0013 Score=61.07 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=32.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
..++.|+|+|++|+||||++..|+++.+ .+|..|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 4578899999999999999999999977 889888763
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.45 E-value=0.0018 Score=62.50 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=26.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fI 215 (388)
.+++|+|++|+||||+++.+|..++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 67999999999999999999999987653
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0019 Score=66.25 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
...++|.|++|+||||+++.+|+.+|++++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 468999999999999999999999999988754
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.0022 Score=60.92 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCcce--echhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL--STKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fI--D~D~lI 221 (388)
.+.+++|.|++|+||||+++.++..+ +.+++ +..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 35689999999999999999999988 66554 444443
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.31 E-value=0.00097 Score=56.48 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+.+|+|.|.+|+|||++++.+++..+ +|+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~ 57 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSP 57 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECC
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEe
Confidence 457899999999999999999999887 66544
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.30 E-value=0.007 Score=61.42 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=29.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+|+|.|++|+||||+++.+|+.++.+|+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999888754
No 181
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.29 E-value=0.0019 Score=61.40 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
+.+|+|.|++|+|||++++.+|+.++.+++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 5789999999999999999999999987754
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.26 E-value=0.0021 Score=60.21 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
..+|+|.|++|+|||++++.+++.++.+|+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4689999999999999999999999988764
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.23 E-value=0.0031 Score=60.26 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC--ccee
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY--TPLS 216 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~--~fID 216 (388)
.+..++|.|++|+|||++++.+|+.++. +|+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~ 102 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA 102 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCccc
Confidence 3578999999999999999999999984 5543
No 184
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.21 E-value=0.0029 Score=63.79 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc-CCccee--chhHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS--TKELLE 222 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID--~D~lIE 222 (388)
....|+|.|++|+|||++++.+|..+ +.+|+. +.+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45789999999999999999999999 777764 344443
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.19 E-value=0.0027 Score=62.15 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=29.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL 220 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l 220 (388)
..|.|+|++||||||+++.|+..++ ..++..|.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4799999999999999999999986 455778875
No 186
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.18 E-value=0.0029 Score=55.47 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=24.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467889999999999999999999987
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0032 Score=59.52 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc------CCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL------GYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L------G~~fID~D 218 (388)
.+..|+|+|++|+||||+++.+++.+ ++.++-.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 46789999999999999999999988 76666544
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0038 Score=59.21 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---------CCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---------GYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---------G~~fID~D 218 (388)
.+.+|+|.|++|+||||+++.+++.+ ++.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 46789999999999999999999988 77665543
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0036 Score=59.85 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-----------CCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-----------G~~fID~D 218 (388)
+.+|+|.|++|+||||+++.+++.+ ++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 5689999999999999999999988 87777654
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.14 E-value=0.0027 Score=59.18 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|+|+|++|+|||++++.+|+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999998
No 191
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.12 E-value=0.0032 Score=63.85 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=30.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceechh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE 219 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D~ 219 (388)
..+.+++|+|++|+|||++++.||+.+ +.+|+..|-
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 356789999999999999999999997 777777664
No 192
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.12 E-value=0.005 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
..++|.|++|+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47999999999999999999998864
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0043 Score=61.96 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=29.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
.-++..|.|+|++||||||+++.|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3467899999999999999999999999877665
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.12 E-value=0.0032 Score=65.31 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
++..+.|+|++|+||||+++.+|..++.+++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 678999999999999999999999999877654
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.11 E-value=0.0049 Score=67.38 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK 226 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g 226 (388)
.+.|.|.|+||+|||.+|+++|..++.+|+..+ +++.+..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 467999999999999999999999999999764 44444333
No 196
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.11 E-value=0.003 Score=60.65 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC-------cce-echhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPL-STKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fI-D~D~lI 221 (388)
++..|.|+|++||||||+++.|++.|+. ..+ ..|.++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4567999999999999999999998862 344 788764
No 197
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.0032 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|+|.|++|+|||++++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999986
No 198
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.03 E-value=0.0031 Score=68.94 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.++.|.|.|++|+|||++++.+|..+|.+|+..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4578999999999999999999999999998764
No 199
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.97 E-value=0.004 Score=55.78 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELA 207 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LA 207 (388)
.-+|..+.|+|++||||||+.+.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3468899999999999999999888
No 200
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0042 Score=60.79 Aligned_cols=27 Identities=4% Similarity=0.112 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-++.+|+|.|++|+|||++++.+++.|
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.89 E-value=0.0048 Score=63.46 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
....|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 4578999999999999999999999999988654
No 202
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.88 E-value=0.0038 Score=67.85 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
.+..|+|+|++||||||+++.||..++.+|+..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 5678999999999999999999999998887654
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.86 E-value=0.0043 Score=60.08 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=29.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL 220 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l 220 (388)
-+|..|.|+|++||||||+++.|+..+. ..++..|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3577899999999999999999999773 446666654
No 204
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.85 E-value=0.0056 Score=56.22 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC---Ccceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~ 217 (388)
.+.+|+|.|.+|+|||++++.+++.++ .+|+..
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 357899999999999999999999885 455543
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.84 E-value=0.0052 Score=54.32 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..+.|+|++||||||+++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999844
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.81 E-value=0.0065 Score=57.34 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=27.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
..+++.|++|+|||++++.+|+.++.+++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 44666777999999999999999998888754
No 207
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.78 E-value=0.0051 Score=55.33 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
|..|.|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4578999999999999999999987
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.78 E-value=0.006 Score=63.14 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D 218 (388)
+..|+|+|++|+||||+++.+|..++.+|+..+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345999999999999999999999998887653
No 209
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.77 E-value=0.0044 Score=57.36 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999999999766
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.75 E-value=0.0056 Score=65.43 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=30.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceechh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE 219 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D~ 219 (388)
..+.+++|+|++|+|||++++.||+.+ +..++..|-
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 356789999999999999999999998 888887765
No 211
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.72 E-value=0.0067 Score=57.79 Aligned_cols=31 Identities=10% Similarity=-0.121 Sum_probs=26.6
Q ss_pred eEEEEecCCCchHHHHHHHHHhc----CCcceech
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL----GYTPLSTK 218 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D 218 (388)
+++|+|++|+||||+++.+++.+ ++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999998 55555443
No 212
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.71 E-value=0.0066 Score=53.39 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|..+.|+|++||||||+++.++..+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999998654
No 213
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.69 E-value=0.0053 Score=56.36 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3367889999999999999999998765
No 214
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.58 E-value=0.0083 Score=53.41 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++..++++|+||+||||++..++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999997777654
No 215
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.57 E-value=0.0095 Score=61.66 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+|.+|.|+|++||||||+.+.|+..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467799999999999999999988774
No 216
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.57 E-value=0.0071 Score=58.81 Aligned_cols=29 Identities=14% Similarity=0.120 Sum_probs=26.1
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..-+|..+.|+|++||||||+.+.|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44578999999999999999999999887
No 217
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.48 E-value=0.0066 Score=56.25 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999998765
No 218
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=95.46 E-value=0.0033 Score=53.32 Aligned_cols=84 Identities=23% Similarity=0.359 Sum_probs=68.0
Q ss_pred ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEcc-CCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~ 158 (388)
.|.|.....+|.|++.+++ .+++.|+-..++|.+.... .++....++. .||..|+|.|.-|.+-+..+.+.++
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~~~y~~~l-~L~~~I~~e~S~~~v~~~kiei~L~ 78 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNEI-DLFHCIDPNDSKHKRTDRSILCCLR 78 (125)
T ss_dssp CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEEE-EBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred ceeEEeCCCEEEEEEEecC-----CCceEEEEECCEEEEEEEeCCCCceEEEEE-EccceeccccCEEEECCCEEEEEEE
Confidence 6999999999999999887 3799999999999998764 2334455555 6999999999999987777778888
Q ss_pred ccCCCCCCchh
Q 016486 159 KQDPELKWPDI 169 (388)
Q Consensus 159 ~~~~~~~wp~~ 169 (388)
+.+.+..||.+
T Consensus 79 K~~~~~~W~rL 89 (125)
T 1ejf_A 79 KGESGQSWPRL 89 (125)
T ss_dssp ESSTTCCCSSS
T ss_pred ECCCCCCCCce
Confidence 87665567776
No 219
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.45 E-value=0.017 Score=55.55 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=34.0
Q ss_pred hhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 170 ~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
.+.|..+...+....-+..++|.|++|+|||++++.+|+.+...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 45677777555443334569999999999999999999999754
No 220
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.43 E-value=0.0069 Score=57.04 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3367889999999999999999999766
No 221
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.43 E-value=0.0044 Score=61.16 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=26.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
.+++.|+|.|+.||||||+++.|++.|+..
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 356889999999999999999999999753
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.42 E-value=0.0086 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++..|.|+|++||||||+.+.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 223
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.42 E-value=0.007 Score=57.25 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3367889999999999999999999766
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.41 E-value=0.0097 Score=57.15 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC----Ccc--eechhHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTP--LSTKELLETF 224 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG----~~f--ID~D~lIE~~ 224 (388)
+.+|+|.|++|+|||++++.+|..+. +++ +...+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 57899999999999999999998654 433 5555555443
No 225
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.41 E-value=0.0085 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=24.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.-+|..+.|+|++||||||+.+.|+-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999999975
No 226
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.40 E-value=0.0073 Score=55.98 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367899999999999999999998765
No 227
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.39 E-value=0.0074 Score=56.52 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367889999999999999999998766
No 228
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.38 E-value=0.0074 Score=56.33 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999999998876
No 229
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.36 E-value=0.0094 Score=55.66 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~ 219 (388)
+..++|.|++|+||||+.+.+++.+++.+++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 4789999999999999999999999877887654
No 230
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.36 E-value=0.0077 Score=55.43 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998765
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.34 E-value=0.0077 Score=57.43 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999999998766
No 232
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.32 E-value=0.011 Score=53.81 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=32.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
..|.-|.|+|.+|+||||++..|.++ |+.++.=|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~ 50 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID 50 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence 46788999999999999999999986 99888877654
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.30 E-value=0.0094 Score=56.14 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=24.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..|.|+|++||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 357789999999999999999998865
No 234
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=95.29 E-value=0.0033 Score=54.42 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=68.9
Q ss_pred CCceeecCC-CceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCc------------chhhhhhhhhhccCCCCc
Q 016486 78 TSQYEFSDG-SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF------------ITLIETNQLFDKIKPTET 144 (388)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~l~~~i~~~e~ 144 (388)
.-.|.|... ..+|.|.+.+++ ...+|+.|+-..++|.|.++-.++. .-.++.+ ||..|+|.|.
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~---v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~-L~~~I~pe~S 94 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK-LRNLIEPEQC 94 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEE-BSSCEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEEeCC---CCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEecc-ccccCCchhC
Confidence 447999998 999999999985 3458899999999999988654432 2233334 9999999999
Q ss_pred eeecchhHHHHHhhccCCCCCCchh
Q 016486 145 IWYIDEDQLVINLKKQDPELKWPDI 169 (388)
Q Consensus 145 iw~~d~~~~v~~~~~~~~~~~wp~~ 169 (388)
-|.+.+..+.+.++|.+. ..||.+
T Consensus 95 ~~~v~~~kIeI~L~K~e~-~~W~~L 118 (134)
T 1wh0_A 95 TFCFTASRIDICLRKRQS-QRWGGL 118 (134)
T ss_dssp EEEECSSEEEEEEEESSS-CCCSCS
T ss_pred EEEEeCCEEEEEEEECCC-Cccccc
Confidence 999988888888888754 578877
No 235
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.29 E-value=0.0081 Score=56.85 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 367889999999999999999999766
No 236
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.29 E-value=0.0097 Score=56.16 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=24.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.-+|..+.|+|++||||||+.+.|+-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346788999999999999999999986
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.28 E-value=0.0076 Score=55.88 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999999765
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.27 E-value=0.0085 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+|..+.|+|++||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999999864
No 239
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.27 E-value=0.0091 Score=58.22 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
+..+.|+|++||||||+.+.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999987654
No 240
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.25 E-value=0.0097 Score=57.37 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..|.|+|++||||||+.+.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.25 E-value=0.0085 Score=56.74 Aligned_cols=28 Identities=29% Similarity=0.196 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999998876
No 242
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.24 E-value=0.0087 Score=56.29 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=24.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999999998765
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.24 E-value=0.0083 Score=55.12 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=24.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367889999999999999999998765
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.20 E-value=0.0056 Score=66.53 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
.+..++|+|++|+||||+++.||..++.+|+..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999888764
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.15 E-value=0.0094 Score=56.80 Aligned_cols=27 Identities=19% Similarity=0.035 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 367889999999999999999999766
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.15 E-value=0.012 Score=51.59 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC--Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~ 219 (388)
..+|..+.|+|++|+||||+++.+|...+ .-|++++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 44688999999999999999999987433 44666654
No 247
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.14 E-value=0.0097 Score=56.07 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 248
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.12 E-value=0.0099 Score=55.75 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467889999999999999999998765
No 249
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.12 E-value=0.01 Score=55.96 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999998765
No 250
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.11 E-value=0.012 Score=59.21 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-----CCcc--eechhHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTP--LSTKELL 221 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~f--ID~D~lI 221 (388)
..+++|.|++|+||||+++.++..+ +.++ ++...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5689999999999999999999988 6554 4554443
No 251
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.03 E-value=0.0081 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..|.|+|.+||||||+.+.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.02 E-value=0.014 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|..+.|+|++|+||||+++.++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999999999983
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.01 E-value=0.012 Score=62.52 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=27.4
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~ 217 (388)
+++|+|++|+|||++++.||+.++.+|+..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999999999877644
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.96 E-value=0.013 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..|.|+|++||||||+.+.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 255
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.96 E-value=0.014 Score=58.11 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.++||-.+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 357889999999999999999999866
No 256
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.96 E-value=0.012 Score=55.28 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=24.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367889999999999999999998765
No 257
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.95 E-value=0.012 Score=54.89 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
+.+|+|.|++|+||||++..||+.++-..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 4579999999999999999999998755444
No 258
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.95 E-value=0.0082 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+|+|.|++|+|||++++.+++.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999987
No 259
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.94 E-value=0.017 Score=54.85 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=21.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+++|+|++|+||||+++.+|..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999965
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.016 Score=55.63 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----C--Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~ 219 (388)
++..|.|+|+.|+||||++..||..+ | .-+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57799999999999999999998665 4 35677775
No 261
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.015 Score=54.90 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+++|.|++|+||||+++.+|+.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999875
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.89 E-value=0.017 Score=54.11 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=31.8
Q ss_pred CCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 162 PELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 162 ~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.++++|++ ...+.+. ....+|..++|+|.+|+||||+++.+|..+
T Consensus 15 ~~i~t~g~-~~Ld~i~---~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 15 VGLLFSGC-TGINDKT---LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CCBCCCSC-TTHHHHH---CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcccCCH-HHHHHHh---cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555544 2233333 345578899999999999999999888765
No 263
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.86 E-value=0.013 Score=63.59 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D 218 (388)
.+.+++|+|++|+||||+++.||+.+ +.+++..|
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 45679999999999999999999998 77666543
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.83 E-value=0.015 Score=54.11 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=22.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.|+|++||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999765
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.81 E-value=0.018 Score=51.45 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=21.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..|.|+|++||||||+...|+..|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 266
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.76 E-value=0.024 Score=48.82 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
...+|+|.+||||||+.++|+-.|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 37889999999999999999988863
No 267
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.76 E-value=0.016 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.9
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+++|.|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 268
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.75 E-value=0.016 Score=58.13 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 367889999999999999999999776
No 269
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.74 E-value=0.03 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
+..++|.|++|+||||+++.+|+.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999975
No 270
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.73 E-value=0.016 Score=57.39 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 367889999999999999999999765
No 271
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.72 E-value=0.015 Score=57.11 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=25.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+|..|.|+|++||||||+.+.|+..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578999999999999999999998764
No 272
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.71 E-value=0.019 Score=50.53 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=21.4
Q ss_pred CCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 165 ~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.||+-...|-.-........+..+|+|+|.+|+||||+...+...
T Consensus 9 ~~~~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 9 HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccCCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 355544444333322333445678999999999999999888753
No 273
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.70 E-value=0.017 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 367889999999999999999999765
No 274
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.017 Score=55.21 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=22.1
Q ss_pred eEEEEecCCCchHHHHHHHHHhcC
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+++|.|++|+||||+++.+|+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999999873
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.69 E-value=0.017 Score=55.91 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
++..|.|+|++||||||+++.||..+ | ..++|.|.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35689999999999999999999876 2 44566664
No 276
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.017 Score=57.36 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 357889999999999999999999765
No 277
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.68 E-value=0.0081 Score=60.31 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=23.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+++.|+|.|+.||||||+++.|++.|.
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34667899999999999999999999885
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.65 E-value=0.017 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..|.|+|++||||||+.+.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46789999999999999999999876
No 279
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.63 E-value=0.031 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..|.|+|++||||||+.+.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 280
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.62 E-value=0.017 Score=55.52 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.6
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.+.|+-.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999999998765
No 281
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.61 E-value=0.018 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 357889999999999999999999765
No 282
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.61 E-value=0.0073 Score=59.53 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+++.|+|.|+.||||||+++.|++.|+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999999885
No 283
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.58 E-value=0.019 Score=57.20 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 367889999999999999999999765
No 284
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.58 E-value=0.029 Score=49.60 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+...|+|+|.+|+||||+...|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 285
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.56 E-value=0.022 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcC
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.+++|.|++|+||||+++.+++.+.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999974
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.54 E-value=0.023 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..+.|+|++||||||+++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999888643
No 287
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.53 E-value=0.015 Score=57.48 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 367889999999999999999999765
No 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.53 E-value=0.012 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 57889999999999999999998876
No 289
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.53 E-value=0.021 Score=54.55 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS 216 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID 216 (388)
.+.+|+|+|.+|+|||++++.+++.+ +.+|+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~ 58 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVT 58 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE
Confidence 45789999999999999999999965 455543
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.52 E-value=0.017 Score=54.67 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
|..+.|+|++||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999999998764
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.50 E-value=0.025 Score=50.36 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=28.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~ 219 (388)
..+|..+.|+|++|+||||++..++..+ +.-|++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3468899999999999999988776543 355666654
No 292
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.48 E-value=0.022 Score=46.55 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998765
No 293
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.46 E-value=0.021 Score=57.21 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=24.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.-+|..+.|+|++||||||+.++||-.+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3467899999999999999999999654
No 294
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.46 E-value=0.2 Score=43.40 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=49.0
Q ss_pred eEEEE-ecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhc---------cCcHHHHHHHHHHHHHH
Q 016486 188 SIFLV-GDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLA---------EGSDSVVNGECDVLESL 252 (388)
Q Consensus 188 ~IvLI-G~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~---------~Ge~~FRe~E~~vL~~L 252 (388)
.|.++ +-.|+||||++..||..|. .-++|+|.- .+...++.. .+.+.++ ++++.+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~------~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~l 72 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ------MSLTNWSKAGKAAFDVFTAASEKDV----YGIRKD 72 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT------CHHHHHHTTSCCSSEEEECCSHHHH----HTHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC------CCHHHHHhcCCCCCcEEecCcHHHH----HHHHHh
Confidence 45555 5678999999999988773 567888832 222233221 1223332 455566
Q ss_pred hcCCC-eEEEecCCcccccccHHHHHhhcC-CcEEEEEcC
Q 016486 253 SSHVR-AVVATLGGQQGAAARADKWQHLYA-GFTVWLSQT 290 (388)
Q Consensus 253 ~~~~~-~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~ 290 (388)
....+ +||-|+++ ........+.. +.+|..-.+
T Consensus 73 ~~~yD~viiD~~~~-----~~~~~~~~l~~ad~viiv~~~ 107 (206)
T 4dzz_A 73 LADYDFAIVDGAGS-----LSVITSAAVMVSDLVIIPVTP 107 (206)
T ss_dssp TTTSSEEEEECCSS-----SSHHHHHHHHHCSEEEEEECS
T ss_pred cCCCCEEEEECCCC-----CCHHHHHHHHHCCEEEEEecC
Confidence 55444 55566665 24555555554 555544433
No 295
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.45 E-value=0.024 Score=60.32 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=24.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.+++|+|++|+|||++++.||+.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999987
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.35 E-value=0.023 Score=56.75 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 367889999999999999999999766
No 297
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.038 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=21.8
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+++|.|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999987
No 298
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.30 E-value=0.017 Score=59.71 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=25.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
...+.+|+|+|++|+|||++++.||..++
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999885
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.30 E-value=0.026 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=21.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..|.|+|++||||||+.+.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568999999999999999998864
No 300
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.28 E-value=0.028 Score=49.51 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+...|+|+|.+|+||||+...|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999998763
No 301
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.27 E-value=0.026 Score=58.98 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~ 213 (388)
.+..+.|+|++|+||||+++.+|..+...
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 46799999999999999999999998644
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.25 E-value=0.022 Score=48.40 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
++...|+|+|.+|+||||+...|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.24 E-value=0.023 Score=47.98 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999975
No 304
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.22 E-value=0.015 Score=57.40 Aligned_cols=27 Identities=15% Similarity=-0.032 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.||-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 357889999999999999999999765
No 305
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.22 E-value=0.032 Score=46.88 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=22.2
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+..+|+|+|.+|+||||+...+...
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3445678999999999999999988764
No 306
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.026 Score=57.68 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----C-C-cceech
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----G-Y-TPLSTK 218 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G-~-~fID~D 218 (388)
-+|..+.|+|++||||||+.|.|+..+ | - -++|+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 368899999999999999999999876 5 4 566664
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.20 E-value=0.026 Score=46.29 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999888764
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.15 E-value=0.027 Score=46.23 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999988864
No 309
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.14 E-value=0.052 Score=50.60 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=26.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHhcCC--cceech
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGLGY--TPLSTK 218 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~LG~--~fID~D 218 (388)
..++|.|++|+||||+.+.+++.++. .++++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 58999999999999999999998764 455544
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.14 E-value=0.033 Score=53.28 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.7
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
...+.+..+.|+|++|+||||+.+.|+ .+.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 355678899999999999999999999 543
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.13 E-value=0.025 Score=55.84 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++..|.|+|++||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999875
No 312
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.09 E-value=0.038 Score=49.92 Aligned_cols=27 Identities=11% Similarity=-0.035 Sum_probs=24.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|+-++++|+||+||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999999998887
No 313
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.07 E-value=0.03 Score=47.93 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
++..|+|+|.+|+||||+...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999864
No 314
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.04 E-value=0.03 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=21.3
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|.|+|++||||||+.+.|+..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999876
No 315
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.03 E-value=0.032 Score=48.53 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..|+|+|.+||||||+.+.|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 316
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.02 E-value=0.016 Score=57.41 Aligned_cols=31 Identities=16% Similarity=-0.133 Sum_probs=27.5
Q ss_pred ccCCCeEEEEecCCCchHHHH-HHHHHhcCCc
Q 016486 183 LLKGTSIFLVGDSTEVNEKVA-LELAVGLGYT 213 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVG-r~LAk~LG~~ 213 (388)
..+++.|+|-|..||||||+. +.|++.|+..
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 346789999999999999999 9999998754
No 317
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.01 E-value=0.033 Score=50.49 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=28.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc--C--Ccceech
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL--G--YTPLSTK 218 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L--G--~~fID~D 218 (388)
.+...++++|..|+||||++..||..| | ...+|.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345678999999999999999999766 3 3457766
No 318
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.86 E-value=0.034 Score=59.41 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.0
Q ss_pred eEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL---GYTPLS 216 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L---G~~fID 216 (388)
+++|+|++|+|||++++.||+.+ +.+|+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 69999999999999999999998 455543
No 319
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.86 E-value=0.04 Score=53.95 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
.|..|.|+|.+|+||||++..|.++ |+.++.-|...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 5889999999999999999999887 99988666553
No 320
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.83 E-value=0.027 Score=55.63 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC--Ccceec
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST 217 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~ 217 (388)
++..++|.|++|+||||++..+|...| ..|+++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 466789999999999999999998755 458888
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.80 E-value=0.036 Score=48.27 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..|+|+|.+|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.79 E-value=0.035 Score=45.78 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999988763
No 323
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.78 E-value=0.024 Score=55.12 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.|..|.|+|++||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467899999999999999999998763
No 324
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.76 E-value=0.037 Score=51.33 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..++++|.||+||||.+..++.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999888877
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.75 E-value=0.091 Score=53.71 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l 220 (388)
++..|+++|++|+||||++..||..| | .-++++|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 36789999999999999999999866 3 345777754
No 326
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.74 E-value=0.032 Score=50.43 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.2
Q ss_pred EEEEecCCCchHHHHHHHHHhcCC--cceec
Q 016486 189 IFLVGDSTEVNEKVALELAVGLGY--TPLST 217 (388)
Q Consensus 189 IvLIG~~GSGKSTVGr~LAk~LG~--~fID~ 217 (388)
|+++|.+||||||+|..||.. |. -|+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999987 74 36666
No 327
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.73 E-value=0.021 Score=49.75 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
-++..|.|+|.+||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998764
No 328
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.016 Score=49.84 Aligned_cols=85 Identities=14% Similarity=0.302 Sum_probs=63.9
Q ss_pred ceeecCCCce-------EEEEEccCCcccccccceeeccCCCeEEEEEccCC------CcchhhhhhhhhhccCCCCcee
Q 016486 80 QYEFSDGSAE-------IELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------SFITLIETNQLFDKIKPTETIW 146 (388)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~~~i~~~e~iw 146 (388)
.|.|...+++ |.|++.+++. +++.|+...++|.+.+...+ +..-.++. .||..|.|-+.-|
T Consensus 8 ~~~W~Q~~~~~~~~k~~V~ltI~~~~~-----~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l-~L~~~Idpe~S~~ 81 (134)
T 2cg9_X 8 QVAWAQRSSTTDPERNYVLITVSIADC-----DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHI-DLYKEIIPEKTMH 81 (134)
T ss_dssp ---CBCCCEEECCCSSEEEEECCCSSE-----ESCCCCBCSSEEEECCEEC-------CEEBCEEE-ECSSCCCSSSEEE
T ss_pred CEEEEeCCCCcCCcCCEEEEEEEecCC-----CceEEEEECCEEEEEEecccccCCccCceEEEEE-EChhhccccccEE
Confidence 6888888888 8898888773 59999999999999876554 23445555 6999999999999
Q ss_pred ecchhH-HHHHhhccCC-CCCCchhh
Q 016486 147 YIDEDQ-LVINLKKQDP-ELKWPDIV 170 (388)
Q Consensus 147 ~~d~~~-~v~~~~~~~~-~~~wp~~~ 170 (388)
.+-+.. +.+.+++.+. +..||.+.
T Consensus 82 ~v~~~~~vei~L~K~~~~~~~W~rL~ 107 (134)
T 2cg9_X 82 KVANGQHYFLKLYKKDLESEYWPRLT 107 (134)
T ss_dssp EECCC--CEEEEEECSSSSCCCSCSS
T ss_pred EECCCEEEEEEEEECCCCCCCCCcee
Confidence 987777 7788888774 56788873
No 329
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.63 E-value=0.024 Score=57.43 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE 219 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~ 219 (388)
+..|.|+|.+|+||||++..||..+ ..-++|+|-
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3589999999999999999999886 366778773
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.62 E-value=0.04 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999998864
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.53 E-value=0.045 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=20.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998864
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.53 E-value=0.039 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.++|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999765
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.52 E-value=0.039 Score=54.47 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
++..|.|+|++||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34579999999999999999998876
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.51 E-value=0.04 Score=53.51 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
++..|.|+|++|+||||++..||..+ | .-++|.|-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45689999999999999999999876 2 44667764
No 335
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.44 E-value=0.043 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|..+.|+|++||||||+++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367889999999999999999999876
No 336
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.41 E-value=0.12 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
...|+|.|++|+|||.+++.||..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 347999999999999999999997643
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.39 E-value=0.036 Score=47.33 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.++..+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 344568999999999999999999865
No 338
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.38 E-value=0.043 Score=53.46 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=27.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D 218 (388)
+...|.|+|.+|+||||+...|+..+ | ..++|.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34679999999999999999999876 3 3556666
No 339
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.37 E-value=0.035 Score=52.91 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=24.9
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.+..+.|+|++||||||+.+.|+..+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 45578899999999999999999998544
No 340
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.36 E-value=0.038 Score=47.45 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
..|+|+|.+|+||||+.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999876
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.36 E-value=0.048 Score=52.37 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=20.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..++|+|+.||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999653
No 342
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.34 E-value=0.27 Score=50.89 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
...|.|+|.+|+||||+...||..| | .-++|.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4589999999999999999999766 4 44577764
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.058 Score=46.12 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+...|+|+|.+|+||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988765
No 344
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.31 E-value=0.056 Score=45.23 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+...|+|+|.+|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999998865
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.29 E-value=0.038 Score=53.03 Aligned_cols=33 Identities=24% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK 218 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D 218 (388)
+..|.++|.+|+||||++..||..+ | .-++|.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6789999999999999999999777 3 5577777
No 346
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.22 E-value=0.048 Score=52.09 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=27.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D 218 (388)
++..|.|+|..|+||||+++.||..+ | .-++|.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 57789999999999999999999876 2 4456665
No 347
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.22 E-value=0.04 Score=45.38 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988754
No 348
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.18 E-value=0.033 Score=46.92 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
++...|+|+|.+|+||||+...|...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999998874
No 349
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.18 E-value=0.042 Score=59.68 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLS 216 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID 216 (388)
.+++|+|++|+|||++++.||+.+ +.+|+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~ 621 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 621 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence 479999999999999999999998 555544
No 350
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.16 E-value=0.048 Score=45.78 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.++..+|+|+|.+|+||||+...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 344568999999999999999988864
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.16 E-value=0.042 Score=57.12 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=27.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST 217 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~ 217 (388)
-+|..+.|+|++||||||+.+.|+..+ |--.+|+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 367899999999999999999999876 3445554
No 352
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.14 E-value=0.05 Score=52.96 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=23.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-++..|.|+|++||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 457789999999999999999999765
No 353
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.14 E-value=0.034 Score=53.41 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=22.8
Q ss_pred CCCeEEE--EecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFL--VGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvL--IG~~GSGKSTVGr~LAk~L 210 (388)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3567888 8999999999999999876
No 354
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.13 E-value=0.086 Score=52.01 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=36.1
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceec----hhHHHHHhcCchhhh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLST----KELLETFAKQTIDSW 232 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~----D~lIE~~~g~sI~ei 232 (388)
..++..+.|.|.+|+||||++..+|..+ ..-|||+ |....+..|.....+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l 118 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL 118 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhhe
Confidence 3467899999999999999999888654 3567887 444444455544443
No 355
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.07 E-value=0.062 Score=54.49 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=26.9
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
+.-+|..+.|+|++||||||+.+.|+..+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 445789999999999999999999999874
No 356
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.05 E-value=0.045 Score=56.89 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 367899999999999999999998876
No 357
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.02 E-value=0.053 Score=53.89 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.9
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..++|..+.|+|++|+||||+.+.|+..+
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence 44578899999999999999999998544
No 358
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.99 E-value=0.057 Score=45.06 Aligned_cols=25 Identities=8% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999998875
No 359
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.99 E-value=0.067 Score=52.57 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=26.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
.-+|..+.|+|++||||||+.+.|+..+.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999999999875
No 360
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.94 E-value=0.069 Score=46.77 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+..+|+|+|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 361
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.93 E-value=0.061 Score=44.40 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998765
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.92 E-value=0.059 Score=44.53 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.9
Q ss_pred CeEEEEecCCCchHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELA 207 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LA 207 (388)
.+|+|+|.+|+||||+...|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999998874
No 363
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.90 E-value=0.06 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998863
No 364
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.061 Score=44.37 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=20.0
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999998875
No 365
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.89 E-value=0.065 Score=44.35 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999988864
No 366
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.86 E-value=0.035 Score=58.34 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=25.8
Q ss_pred eEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID 216 (388)
+|+|+|++|+|||++++.+|+.++..++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 89999999999999999999999755443
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.85 E-value=0.062 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999998864
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.83 E-value=0.07 Score=46.24 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+...|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998863
No 369
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.78 E-value=0.07 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988653
No 370
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.77 E-value=0.073 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999988753
No 371
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.75 E-value=0.069 Score=44.59 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999988764
No 372
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.74 E-value=0.049 Score=55.45 Aligned_cols=35 Identities=23% Similarity=0.091 Sum_probs=28.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
++..|+|+|++|+||||++..||..| | .-++++|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 36789999999999999999999776 3 33577773
No 373
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.73 E-value=0.069 Score=45.22 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+|+|+|.+|+||||+.+.|.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35799999999999999988876543
No 374
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.71 E-value=0.03 Score=54.44 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=24.6
Q ss_pred hhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 181 MQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
....+|..+.|+|++|+||||+.+.|+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 45667899999999999999999988643
No 375
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.66 E-value=0.063 Score=46.62 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=22.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3345568999999999999999998864
No 376
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.66 E-value=0.064 Score=54.13 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
++..|.|+|++||||||+.+.|+..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999998874
No 377
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.63 E-value=0.073 Score=44.46 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988754
No 378
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.60 E-value=0.076 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988763
No 379
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.58 E-value=0.074 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 380
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=92.57 E-value=0.34 Score=46.68 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=19.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-.++.|||+|+ ||+|+.+.|-+..
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~ 121 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEY 121 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhC
Confidence 35678999998 5999999998765
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.57 E-value=0.059 Score=44.88 Aligned_cols=25 Identities=4% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999988753
No 382
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.55 E-value=0.085 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988653
No 383
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.52 E-value=0.077 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998875
No 384
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.52 E-value=0.078 Score=44.13 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|+|+|.+|+||||+...|...-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999988653
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.51 E-value=0.087 Score=44.99 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4468999999999999999988763
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.49 E-value=0.057 Score=45.38 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999988753
No 387
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.48 E-value=0.047 Score=56.88 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 367899999999999999999998876
No 388
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.46 E-value=0.082 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988655
No 389
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.46 E-value=0.084 Score=46.14 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+...|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999998753
No 390
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.44 E-value=0.071 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.5
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999988753
No 391
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.43 E-value=0.054 Score=45.68 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999988743
No 392
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.43 E-value=0.084 Score=51.78 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=34.3
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh----HHHHHhcCchhh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE----LLETFAKQTIDS 231 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~----lIE~~~g~sI~e 231 (388)
..+|..+.|.|.+|+||||++..++... ...|+|++. ...+..|.....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~ 115 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS 115 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHH
Confidence 3467899999999999999999888654 356777643 233344544443
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.42 E-value=0.07 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999999765
No 394
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.42 E-value=0.055 Score=54.82 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc----C--Ccceechh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE 219 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~ 219 (388)
++.|.++|..|+||||++..||..| | .-++|+|-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4689999999999999999999766 3 34678873
No 395
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.41 E-value=0.068 Score=44.71 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999988753
No 396
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.40 E-value=0.086 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEecCCCchHHHHHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+|+|+|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 397
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.34 E-value=0.062 Score=55.90 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999765
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.31 E-value=0.084 Score=44.44 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|+|+|.+|+||||+...|...-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999998643
No 399
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.30 E-value=0.057 Score=56.13 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67889999999999999999999865
No 400
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.27 E-value=0.084 Score=44.62 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.8
Q ss_pred eEEEEecCCCchHHHHHHHHHh
Q 016486 188 SIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+|+|+|.+|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999988754
No 401
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.074 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 368899999999999999999999766
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.25 E-value=0.09 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998874
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.25 E-value=0.075 Score=45.89 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=22.9
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+..+|+|+|.+|+||||+...+...
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3445568999999999999999877664
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.089 Score=45.36 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998864
No 405
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.22 E-value=0.056 Score=56.51 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=24.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 357899999999999999999998876
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.21 E-value=0.075 Score=44.89 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34468999999999999999998864
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.21 E-value=0.093 Score=44.30 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999988764
No 408
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.13 E-value=0.067 Score=56.46 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=24.3
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.++|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 367899999999999999999999765
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.12 E-value=0.085 Score=54.06 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=27.6
Q ss_pred hccCCCeEEEEecCCCchHHHHHHH--HHhc----CCcceechh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALEL--AVGL----GYTPLSTKE 219 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~L--Ak~L----G~~fID~D~ 219 (388)
...+|..+.|+|++||||||+++.+ +-.+ |--++++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3446899999999999999999983 3332 445566543
No 410
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.11 E-value=0.078 Score=51.89 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.8
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI 221 (388)
...|.-|.|+|.+|+||||++..|.+ -|+.++.=|...
T Consensus 144 ~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~ 181 (312)
T 1knx_A 144 EVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE 181 (312)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence 34678899999999999999999876 588888777654
No 411
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.10 E-value=0.082 Score=45.40 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.1
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+..+|+|+|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34468999999999999999988764
No 412
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.09 E-value=0.067 Score=45.06 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELA 207 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LA 207 (388)
+..+|+|+|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998765
No 413
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.08 E-value=0.082 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
..+|+|+|.+|+||||+...|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999998864
No 414
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.08 E-value=0.088 Score=48.77 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|.|+|.+|+||||+...|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998654
No 415
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.095 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999988764
No 416
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.94 E-value=0.096 Score=44.82 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999988764
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.93 E-value=0.1 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999988754
No 418
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.91 E-value=0.12 Score=48.56 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=27.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc---CCc--ceechh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE 219 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~ 219 (388)
.+|++.|.+|+||||++-.+|..+ |+. ++|.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 479999999999999988888775 655 568874
No 419
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.91 E-value=0.086 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+|..+.|+|++||||||+.+.|+-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999999765
No 420
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.83 E-value=0.097 Score=50.69 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=23.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-++..|.|+|.+|+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998765
No 421
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.76 E-value=0.13 Score=60.34 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=43.9
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcCCc-----ceech----hHHHHHhcCchhhhhhc---cCcHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT-----PLSTK----ELLETFAKQTIDSWMLA---EGSDSVVNGE 245 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-----fID~D----~lIE~~~g~sI~eif~~---~Ge~~FRe~E 245 (388)
.+|+.+.|.|++|||||++|+.++..-... ||+.+ +++.+..|-.+.+|+.+ .+|..++.+.
T Consensus 1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A 1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHH
Confidence 367779999999999999999988765444 88864 45556667777777654 1455554433
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.70 E-value=0.05 Score=56.55 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 368899999999999999999998766
No 423
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.65 E-value=0.1 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+...|+|+|.+|+||||+...|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988653
No 424
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.65 E-value=0.11 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|..+.|+|++||||||+++.|+-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36789999999999999999977643
No 425
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.62 E-value=0.12 Score=44.32 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|+|+|.+|+||||+...|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3579999999999999999888654
No 426
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.60 E-value=0.11 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999988864
No 427
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.60 E-value=0.1 Score=44.21 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988754
No 428
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=91.60 E-value=0.44 Score=45.73 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=19.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.++.|+|+|+ ||+||.+.|-+.+
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCEEEEECC---CHHHHHHHHHhhC
Confidence 4678999998 7999999998865
No 429
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=91.60 E-value=0.16 Score=52.88 Aligned_cols=98 Identities=9% Similarity=0.084 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC---------------cceechhHHHHHhcCchh-------------hhhhcc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY---------------TPLSTKELLETFAKQTID-------------SWMLAE 236 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~---------------~fID~D~lIE~~~g~sI~-------------eif~~~ 236 (388)
+-+||.|+|..++||||+...|-..-|. .+.|.++ +|+.-|.||. .+++.-
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~-~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMA-MERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChH-HHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4589999999999999999988644442 3455443 5666666654 234555
Q ss_pred CcHHHHHHHHHHHHHHhcCCC--eEEEecCCcccccccHHHHHhhcC---CcEEEEE
Q 016486 237 GSDSVVNGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLYA---GFTVWLS 288 (388)
Q Consensus 237 Ge~~FRe~E~~vL~~L~~~~~--~VVStGGG~~gav~r~enr~~L~~---g~VVyLd 288 (388)
|-.-|-. ++-+.|..-+. +||+.-.|+ .+.....|+.+.. ..++||.
T Consensus 109 GHvDF~~---Ev~raL~~~DgAvlVvda~~GV--~~qT~~v~~~a~~~~lp~i~fIN 160 (548)
T 3vqt_A 109 GHQDFSE---DTYRVLTAVDSALVVIDAAKGV--EAQTRKLMDVCRMRATPVMTFVN 160 (548)
T ss_dssp CGGGCSH---HHHHHHHSCSEEEEEEETTTBS--CHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcHHHHH---HHHHHHHhcCceEEEeecCCCc--ccccHHHHHHHHHhCCceEEEEe
Confidence 6655542 34444443333 455666675 3556667776653 3577774
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.59 E-value=0.1 Score=44.42 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=21.4
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+..+|+|+|.+|+||||+...|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3445678999999999999999988753
No 431
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.53 E-value=0.054 Score=56.57 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.7
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
-+|..+.|+|++||||||+.+.|+..+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3578999999999999999999987763
No 432
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.50 E-value=0.12 Score=44.60 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+|+|+|.+|+||||+...|...-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999887653
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.50 E-value=0.12 Score=45.10 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+..+|+|+|.+|+||||+...|....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999888653
No 434
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.47 E-value=0.11 Score=47.27 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988643
No 435
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.46 E-value=0.11 Score=49.73 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.7
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc---------C--Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL---------G--YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L---------G--~~fID~D~ 219 (388)
..+|..+.|.|.+|+||||++..+|... + .-|||++.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3467899999999999999999998764 2 45777764
No 436
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.45 E-value=0.12 Score=44.41 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999988764
No 437
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.44 E-value=0.095 Score=53.32 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.1
Q ss_pred cCCCe--EEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTS--IFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~--IvLIG~~GSGKSTVGr~LAk~ 209 (388)
-+|.. |.|+|.+||||||+.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 35667 999999999999999999865
No 438
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.12 Score=44.05 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+..+|+|+|.+|+||||+...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998874
No 439
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.42 E-value=0.1 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999988753
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.38 E-value=0.093 Score=44.79 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=21.0
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHH
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+......|+|+|.+|+||||+...|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344567899999999999999987754
No 441
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.13 Score=43.71 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999998765
No 442
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.28 E-value=0.12 Score=47.93 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=23.5
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+|...+++|.||+||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788899999999999999888876
No 443
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.27 E-value=0.12 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999988764
No 444
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.26 E-value=0.13 Score=43.99 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988754
No 445
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.26 E-value=0.11 Score=45.13 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=22.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+...|+|+|.+|+||||+...|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34468999999999999999988864
No 446
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.25 E-value=0.12 Score=51.18 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=28.9
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
..+|..+.|.|++|+||||++..++..+ | .-|||+..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3457889999999999999999988764 3 34777643
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.11 Score=54.89 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
|..+.|+|++||||||+.+.|+-.+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 4678999999999999999999765
No 448
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.20 E-value=0.12 Score=50.47 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+..|.|+|++||||||+-..|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999764
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.15 E-value=0.15 Score=45.26 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.2
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHH
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
..+|..++|.|.+|+|||+++..+|.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45688999999999999999987653
No 450
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.13 E-value=0.094 Score=46.58 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=26.4
Q ss_pred eEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE 219 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~ 219 (388)
.|.+.|-.|+||||++..||..| | .-.||+|-
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 47779999999999999999988 3 34577775
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.13 E-value=0.13 Score=44.23 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3468999999999999999888764
No 452
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.10 E-value=0.13 Score=44.45 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988754
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.10 E-value=0.12 Score=52.50 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=28.6
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceechh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE 219 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~ 219 (388)
++..|.|+|+.|+||||++..||..+. .-++|.|-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 567899999999999999999998772 45667663
No 454
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.09 E-value=0.14 Score=44.35 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988764
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.08 E-value=0.14 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988754
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.07 E-value=0.14 Score=44.00 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
+..+|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4468999999999999999998875
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.04 E-value=0.13 Score=44.02 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999988764
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.12 Score=45.06 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
...+|+|+|.+|+||||+...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4468999999999999999988764
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.98 E-value=0.13 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+..+|+|+|.+|+||||+...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999988864
No 460
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.95 E-value=0.14 Score=50.02 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.+.+++|+|++||||||+.+.|+..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999888764
No 461
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.94 E-value=0.12 Score=49.39 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.4
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
-.|.|+|.+|+||||+.+.|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999764
No 462
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.92 E-value=0.13 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCCeEEEEecCCCchHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELA 207 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LA 207 (388)
+..+|+|+|.+|+||||+...|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999875
No 463
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.91 E-value=0.15 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999874
No 464
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.90 E-value=0.16 Score=49.24 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=29.4
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh--c-------C--Ccceechh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG--L-------G--YTPLSTKE 219 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~--L-------G--~~fID~D~ 219 (388)
..+|..+.|.|.+|+||||++..+|.. + + .-|||++.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346788999999999999999999986 2 2 34777754
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.15 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|+|+|.+|+||||+...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999988764
No 466
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.78 E-value=0.12 Score=49.04 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=23.5
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..+|..+.|.|.+|+||||++..+|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999999999864
No 467
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.76 E-value=0.16 Score=45.92 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHh
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+.++++|.+|||||+++..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999886544
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.74 E-value=0.15 Score=52.24 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=24.8
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..+.|+|++||||||+++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999999998654
No 469
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.68 E-value=0.16 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
...|.|+||.|.||||+|+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999996
No 470
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.66 E-value=0.15 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
....|+|+|.+|+||||+...|...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999988754
No 471
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.63 E-value=0.15 Score=44.31 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
..+|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999998863
No 472
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.61 E-value=0.14 Score=44.17 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
..+|+|+|.+|+||||+...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998753
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.61 E-value=0.16 Score=43.93 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+..+|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999886654
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.60 E-value=0.17 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.175 Sum_probs=21.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999865
No 475
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.53 E-value=0.12 Score=44.10 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.0
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+..+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999887644
No 476
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.47 E-value=0.12 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 016486 186 GTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
...|+|+|.+|+||||+...|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998753
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.47 E-value=0.17 Score=43.91 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999988864
No 478
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.42 E-value=0.21 Score=47.78 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..++|.|.+|+||||++..+|...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999988654
No 479
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.40 E-value=0.15 Score=52.60 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=22.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHhc
Q 016486 187 TSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.|+|++||||||+.+.|+-.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 778999999999999999999876
No 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.38 E-value=0.14 Score=57.12 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=22.8
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHH
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
-+|..+.|+|++||||||+.+.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999999994
No 481
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.33 E-value=0.16 Score=44.40 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.9
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.29 E-value=0.17 Score=44.81 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.6
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+..+|+|+|.+|+||||+...|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999988764
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.27 E-value=0.099 Score=44.11 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=10.2
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 016486 187 TSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk 208 (388)
.+|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988764
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.25 E-value=0.15 Score=46.80 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+..+|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999988754
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.20 E-value=0.13 Score=43.79 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCeEEEEecCCCchHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELA 207 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LA 207 (388)
+..+|+|+|.+|+||||+...|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998773
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.19 E-value=0.19 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
.+|+|+|.+|+||||+...|...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 57999999999999999988754
No 487
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.09 E-value=0.22 Score=50.02 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=24.9
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
...+|..++|.|.+|+||||++..+|..+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999999887753
No 488
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.02 E-value=0.19 Score=46.40 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+..+|+|+|..|+||||+...|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 489
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.99 E-value=0.18 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+..+|+|+|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999998864
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.98 E-value=0.28 Score=58.54 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=37.0
Q ss_pred ccCCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceech----hHHHHHhcCchhhh
Q 016486 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTK----ELLETFAKQTIDSW 232 (388)
Q Consensus 183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D----~lIE~~~g~sI~ei 232 (388)
.-++++|.|.|++|+|||++|..++.... ..|++.+ .+..+..|..+.++
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL 1482 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhc
Confidence 44689999999999999999998877653 4588876 44445556555544
No 491
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.97 E-value=0.18 Score=45.75 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=21.2
Q ss_pred cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486 184 LKGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 184 l~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
++.-.|+|+|.+|+|||++...+...
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhC
Confidence 45568999999999999999988753
No 492
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.93 E-value=0.084 Score=51.53 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~ 212 (388)
.| .++|+|.+||||||+.++|+-.++.
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45 8999999999999999999887763
No 493
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.85 E-value=0.17 Score=44.98 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCchHHHHHHHHH
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAV 208 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk 208 (388)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998864
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.83 E-value=0.18 Score=50.93 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHhc
Q 016486 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 186 g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
+..|.|+|.+||||||+.+.|+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999998743
No 495
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.77 E-value=0.3 Score=44.64 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=25.3
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG 211 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG 211 (388)
..+++.+++|+|++|+|||.++..++..++
T Consensus 104 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 104 RWLVDKRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp HHTTTSEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred HHHhCCCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 344566799999999999999999988875
No 496
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.69 E-value=0.2 Score=46.95 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK 218 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D 218 (388)
+++.|.++|-.|+||||++-.||..| | .-.||+|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45678888999999999999888876 4 4567887
No 497
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.65 E-value=0.21 Score=52.19 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.5
Q ss_pred hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486 182 QLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
..+.+..++|.|++|+||||+.+.++..+
T Consensus 200 ~~~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 200 QLAGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999888755
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.63 E-value=0.2 Score=43.58 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHh
Q 016486 187 TSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 187 ~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
..|+|+|.+|+||||+...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999988753
No 499
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.51 E-value=0.19 Score=50.39 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=21.8
Q ss_pred eEEEEecCCCchHHHHHHHHHhc
Q 016486 188 SIFLVGDSTEVNEKVALELAVGL 210 (388)
Q Consensus 188 ~IvLIG~~GSGKSTVGr~LAk~L 210 (388)
.++|.|.+|+||||+...+++.|
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 500
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.43 E-value=0.13 Score=44.97 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCchHHHHHHHHHh
Q 016486 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (388)
Q Consensus 185 ~g~~IvLIG~~GSGKSTVGr~LAk~ 209 (388)
....|+|+|.+|+||||+...|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988665
Done!