BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016487
         (388 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F52|E Chain E, Structure Of A Glomulin-Rbx1-Cul1 Complex
 pdb|4F52|F Chain F, Structure Of A Glomulin-Rbx1-Cul1 Complex
          Length = 596

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 202 RPHLFSFVGAPRKGSQRAAIRYELIKQCGESIRCKLLTCRYGSGASNKCSSP-----SEI 256
           +P +   +       +   ++ EL+K C +S++C LLT ++   +    + P     SEI
Sbjct: 187 KPFVEEVIDNKENSLENEKLKDELLKFCFKSLKCPLLTAQFFEQSEEGGNDPFRYFASEI 246

Query: 257 LGVMS 261
           +G +S
Sbjct: 247 IGFLS 251


>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
 pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
 pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
 pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
 pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
 pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
           Syringae
          Length = 233

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 63  ENHPLRTWDPSRATLFYVPFYGGLHASSKFRETNLTARDELAVRFSE 109
           EN PL  W   R     +   GGL   S  RET  +  DE A R SE
Sbjct: 35  ENIPLAXWRIHRK----IGXSGGLXLKSLSRETGXSITDEQAERLSE 77


>pdb|1IZL|C Chain C, Crystal Structure Of Photosystem Ii
 pdb|1IZL|M Chain M, Crystal Structure Of Photosystem Ii
          Length = 473

 Score = 28.1 bits (61), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 30  GLGQPLQHVNAVSPACWFATNQFTAAMIF 58
           G+   +  VN VSP  W AT+ F  A  F
Sbjct: 409 GVATEINSVNFVSPRSWLATSHFVLAFFF 437


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,532,224
Number of Sequences: 62578
Number of extensions: 462555
Number of successful extensions: 1083
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 8
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)