Query 016489
Match_columns 388
No_of_seqs 300 out of 1801
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 2E-118 4E-123 867.9 27.5 386 1-388 225-621 (621)
2 PRK10015 oxidoreductase; Provi 100.0 4.3E-39 9.3E-44 328.4 23.1 244 6-257 138-401 (429)
3 PF05187 ETF_QO: Electron tran 100.0 2.3E-41 4.9E-46 278.5 -1.1 109 235-343 1-109 (110)
4 PRK10157 putative oxidoreducta 100.0 1.6E-36 3.5E-41 309.3 21.0 245 5-258 137-401 (428)
5 COG0644 FixC Dehydrogenases (f 100.0 3.2E-36 6.9E-41 304.1 22.7 268 5-300 125-395 (396)
6 PLN00093 geranylgeranyl diphos 99.9 1.6E-24 3.4E-29 222.4 23.4 194 17-233 184-385 (450)
7 TIGR02028 ChlP geranylgeranyl 99.9 2.9E-24 6.3E-29 217.3 22.3 194 17-233 145-346 (398)
8 TIGR02023 BchP-ChlP geranylger 99.9 4.6E-22 9.9E-27 200.3 24.0 192 17-232 140-335 (388)
9 COG2440 FixX Ferredoxin-like p 99.9 2.9E-24 6.2E-29 170.7 4.3 82 298-387 16-98 (99)
10 PRK15449 ferredoxin-like prote 99.8 7.7E-21 1.7E-25 153.0 3.2 80 298-387 14-94 (95)
11 TIGR02032 GG-red-SF geranylger 99.8 3.5E-17 7.7E-22 156.5 19.4 164 15-196 131-295 (295)
12 PLN02697 lycopene epsilon cycl 99.6 2.8E-14 6E-19 149.1 23.9 200 12-231 228-453 (529)
13 PRK11445 putative oxidoreducta 99.6 2E-14 4.3E-19 143.1 20.5 201 14-251 137-341 (351)
14 TIGR01790 carotene-cycl lycope 99.6 2.1E-13 4.6E-18 136.8 24.0 213 13-247 122-347 (388)
15 PLN02463 lycopene beta cyclase 99.6 2.5E-13 5.3E-18 139.6 20.5 171 13-202 150-334 (447)
16 PF04820 Trp_halogenase: Trypt 99.6 5.8E-14 1.3E-18 144.6 15.0 184 4-217 182-371 (454)
17 PRK09126 hypothetical protein; 99.4 2E-12 4.3E-17 129.9 15.8 206 8-233 143-356 (392)
18 PRK07045 putative monooxygenas 99.4 2.1E-11 4.5E-16 122.6 20.8 211 5-232 137-358 (388)
19 PF01494 FAD_binding_3: FAD bi 99.4 3E-12 6.4E-17 125.1 11.9 182 18-216 158-348 (356)
20 PRK06753 hypothetical protein; 99.4 3.9E-11 8.4E-16 119.7 19.8 208 7-233 127-339 (373)
21 PRK06185 hypothetical protein; 99.4 3.3E-11 7.1E-16 121.8 19.2 184 15-216 151-342 (407)
22 TIGR01988 Ubi-OHases Ubiquinon 99.4 2.8E-11 6E-16 120.7 17.2 203 9-233 140-352 (385)
23 PRK08243 4-hydroxybenzoate 3-m 99.3 3.9E-10 8.5E-15 113.7 21.8 76 157-233 274-351 (392)
24 PRK07538 hypothetical protein; 99.3 2.8E-10 6E-15 115.6 20.5 190 17-227 150-361 (413)
25 PRK05732 2-octaprenyl-6-methox 99.3 2.4E-10 5.3E-15 114.6 19.3 199 13-233 150-358 (395)
26 PRK07333 2-octaprenyl-6-methox 99.3 1.5E-10 3.2E-15 116.6 17.4 201 12-233 147-356 (403)
27 TIGR01984 UbiH 2-polyprenyl-6- 99.3 1.3E-10 2.7E-15 116.3 16.8 200 12-233 142-349 (382)
28 PRK07608 ubiquinone biosynthes 99.2 4.3E-10 9.3E-15 112.7 17.3 202 12-233 147-355 (388)
29 PRK07494 2-octaprenyl-6-methox 99.2 5.6E-10 1.2E-14 112.1 17.8 201 12-232 147-352 (388)
30 PRK07364 2-octaprenyl-6-methox 99.2 6.7E-10 1.5E-14 112.4 18.3 197 17-233 166-370 (415)
31 PRK06617 2-octaprenyl-6-methox 99.2 1.5E-09 3.2E-14 109.0 20.3 196 12-233 141-339 (374)
32 PRK07588 hypothetical protein; 99.2 2.1E-09 4.5E-14 108.2 20.9 207 7-233 133-350 (391)
33 PRK08020 ubiF 2-octaprenyl-3-m 99.2 1.9E-09 4.2E-14 108.3 19.9 185 12-216 149-341 (391)
34 PRK08163 salicylate hydroxylas 99.2 3.2E-09 7E-14 106.7 21.3 206 9-233 143-357 (396)
35 PRK08244 hypothetical protein; 99.1 8.8E-09 1.9E-13 107.1 23.6 179 17-215 144-328 (493)
36 PRK08013 oxidoreductase; Provi 99.1 2.6E-09 5.7E-14 108.1 18.2 202 12-233 148-358 (400)
37 TIGR01989 COQ6 Ubiquinone bios 99.1 7.6E-09 1.6E-13 106.1 21.3 206 12-233 163-409 (437)
38 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 5.4E-09 1.2E-13 105.6 19.1 76 157-233 274-351 (390)
39 PRK05868 hypothetical protein; 99.1 6.4E-09 1.4E-13 104.5 19.0 188 8-215 136-336 (372)
40 PRK05714 2-octaprenyl-3-methyl 99.1 6.2E-09 1.3E-13 105.3 18.7 200 12-233 148-361 (405)
41 PRK08850 2-octaprenyl-6-methox 99.1 6.4E-09 1.4E-13 105.3 18.3 199 12-233 148-358 (405)
42 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.5E-08 3.2E-13 102.3 20.8 205 10-232 139-350 (387)
43 PRK08773 2-octaprenyl-3-methyl 99.1 1.1E-08 2.4E-13 102.9 19.1 185 12-216 149-342 (392)
44 PTZ00367 squalene epoxidase; P 99.0 1.5E-08 3.2E-13 107.2 20.2 162 15-199 202-374 (567)
45 PF08491 SE: Squalene epoxidas 99.0 2.3E-08 5.1E-13 95.7 16.9 156 20-199 1-167 (276)
46 PRK06183 mhpA 3-(3-hydroxyphen 99.0 4.8E-08 1E-12 102.8 21.1 75 157-232 281-358 (538)
47 TIGR03219 salicylate_mono sali 98.9 4.3E-08 9.4E-13 99.6 17.8 211 9-233 136-374 (414)
48 PRK06847 hypothetical protein; 98.9 1.7E-07 3.6E-12 93.6 20.3 74 158-232 278-351 (375)
49 PRK08849 2-octaprenyl-3-methyl 98.9 1.6E-07 3.5E-12 94.5 20.3 201 10-233 145-350 (384)
50 COG1142 HycB Fe-S-cluster-cont 98.9 1.3E-09 2.8E-14 96.7 3.2 54 314-376 50-103 (165)
51 PLN02985 squalene monooxygenas 98.9 3.2E-07 6.9E-12 96.2 21.8 175 18-215 194-385 (514)
52 PRK06996 hypothetical protein; 98.9 3E-07 6.4E-12 93.1 20.6 77 156-233 285-361 (398)
53 COG1143 NuoI Formate hydrogenl 98.8 1.1E-09 2.5E-14 98.0 2.5 56 313-374 53-114 (172)
54 PF14697 Fer4_21: 4Fe-4S diclu 98.8 1.4E-09 3E-14 80.7 2.4 56 312-374 3-59 (59)
55 PF05834 Lycopene_cycl: Lycope 98.8 2.5E-07 5.4E-12 93.1 17.8 163 12-197 122-289 (374)
56 PF13247 Fer4_11: 4Fe-4S diclu 98.8 2.1E-09 4.5E-14 87.9 1.7 59 314-379 6-64 (98)
57 PRK06475 salicylate hydroxylas 98.8 5.6E-07 1.2E-11 91.1 19.3 182 16-216 151-345 (400)
58 PRK08132 FAD-dependent oxidore 98.8 8.2E-07 1.8E-11 93.7 21.3 177 18-215 171-355 (547)
59 TIGR01789 lycopene_cycl lycope 98.8 8.5E-07 1.8E-11 89.3 20.1 160 13-196 119-285 (370)
60 PRK07236 hypothetical protein; 98.7 7.1E-07 1.5E-11 89.8 18.8 60 157-216 300-360 (386)
61 COG1146 Ferredoxin [Energy pro 98.7 1.8E-08 4E-13 76.7 4.1 59 312-377 5-63 (68)
62 PRK06184 hypothetical protein; 98.7 1.8E-06 3.9E-11 90.1 20.3 60 157-216 276-337 (502)
63 PRK08294 phenol 2-monooxygenas 98.7 5E-06 1.1E-10 89.4 23.6 197 17-233 195-413 (634)
64 PRK06834 hypothetical protein; 98.6 7.1E-06 1.5E-10 85.6 23.6 60 156-215 259-321 (488)
65 PRK07190 hypothetical protein; 98.6 5.5E-06 1.2E-10 86.4 21.2 180 12-215 145-331 (487)
66 PRK06126 hypothetical protein; 98.6 6E-06 1.3E-10 87.0 20.1 60 156-215 297-359 (545)
67 COG1144 Pyruvate:ferredoxin ox 98.5 5.2E-08 1.1E-12 77.0 3.2 57 311-377 31-88 (91)
68 PRK08348 NADH-plastoquinone ox 98.5 5.9E-08 1.3E-12 82.2 3.6 56 312-376 39-94 (120)
69 TIGR02936 fdxN_nitrog ferredox 98.5 7.7E-08 1.7E-12 77.2 2.1 60 310-375 16-90 (91)
70 TIGR03478 DMSO_red_II_bet DMSO 98.4 2.3E-07 4.9E-12 90.2 5.5 60 312-378 126-185 (321)
71 PLN02927 antheraxanthin epoxid 98.4 1.8E-05 3.9E-10 85.1 20.3 190 8-216 224-431 (668)
72 CHL00065 psaC photosystem I su 98.4 6.3E-08 1.4E-12 76.3 1.1 59 311-375 5-66 (81)
73 PF13237 Fer4_10: 4Fe-4S diclu 98.4 1.2E-07 2.7E-12 68.1 2.3 49 311-368 3-52 (52)
74 COG0437 HybA Fe-S-cluster-cont 98.4 2.4E-07 5.2E-12 85.0 4.2 58 314-378 66-123 (203)
75 PF13187 Fer4_9: 4Fe-4S diclus 98.4 7.6E-08 1.7E-12 69.8 0.7 51 316-372 1-55 (55)
76 PRK09626 oorD 2-oxoglutarate-a 98.4 2.8E-07 6E-12 76.1 3.8 63 308-376 9-74 (103)
77 TIGR02060 aprB adenosine phosp 98.4 1.6E-07 3.4E-12 81.0 2.4 55 313-375 6-65 (132)
78 TIGR03048 PS_I_psaC photosyste 98.4 1.7E-07 3.7E-12 73.6 2.2 65 308-379 2-70 (80)
79 PF12838 Fer4_7: 4Fe-4S diclus 98.4 5.2E-08 1.1E-12 70.1 -0.9 45 327-371 6-52 (52)
80 PRK09623 vorD 2-ketoisovalerat 98.3 3.9E-07 8.4E-12 75.5 3.9 55 311-375 47-101 (105)
81 TIGR01660 narH nitrate reducta 98.3 4.4E-07 9.6E-12 91.7 4.9 60 311-377 177-236 (492)
82 PRK09624 porD pyuvate ferredox 98.3 2.5E-07 5.5E-12 76.6 2.6 54 312-375 48-101 (105)
83 TIGR01582 FDH-beta formate deh 98.3 4.7E-07 1E-11 87.6 4.9 63 307-377 82-146 (283)
84 PLN00071 photosystem I subunit 98.3 2.6E-07 5.7E-12 72.7 2.1 60 312-377 6-68 (81)
85 PRK08222 hydrogenase 4 subunit 98.3 3.1E-07 6.6E-12 83.5 2.7 58 312-375 35-93 (181)
86 TIGR01944 rnfB electron transp 98.3 4.4E-07 9.6E-12 81.2 3.6 58 308-375 106-163 (165)
87 KOG2614 Kynurenine 3-monooxyge 98.3 4.7E-06 1E-10 83.4 11.1 53 158-210 284-337 (420)
88 PRK12387 formate hydrogenlyase 98.3 4.8E-07 1E-11 82.1 3.7 57 313-375 36-93 (180)
89 PRK05888 NADH dehydrogenase su 98.3 7.6E-07 1.6E-11 79.6 4.9 57 313-375 56-117 (164)
90 TIGR02179 PorD_KorD 2-oxoacid: 98.3 5.5E-07 1.2E-11 70.2 3.2 55 311-375 21-75 (78)
91 PRK09625 porD pyruvate flavodo 98.3 3.4E-07 7.3E-12 79.1 1.9 54 312-375 56-109 (133)
92 PRK12771 putative glutamate sy 98.3 9.8E-07 2.1E-11 93.5 5.7 61 312-375 501-561 (564)
93 PRK02651 photosystem I subunit 98.2 5.4E-07 1.2E-11 70.8 2.3 62 307-375 2-66 (81)
94 PRK06273 ferredoxin; Provision 98.2 4.8E-07 1E-11 80.9 1.7 57 312-374 46-110 (165)
95 TIGR02494 PFLE_PFLC glycyl-rad 98.2 3.8E-07 8.2E-12 88.7 1.0 61 309-375 42-102 (295)
96 COG1245 Predicted ATPase, RNas 98.2 8.7E-07 1.9E-11 89.4 3.6 66 307-378 3-74 (591)
97 TIGR00403 ndhI NADH-plastoquin 98.2 1.1E-06 2.3E-11 80.1 3.1 57 313-375 60-122 (183)
98 TIGR03149 cyt_nit_nrfC cytochr 98.2 3E-06 6.5E-11 79.6 5.9 57 312-375 89-145 (225)
99 TIGR02163 napH_ ferredoxin-typ 98.1 1.3E-06 2.7E-11 83.7 2.9 60 308-375 194-254 (255)
100 PRK05113 electron transport co 98.1 1.3E-06 2.7E-11 80.1 2.5 57 309-375 108-164 (191)
101 KOG3256 NADH:ubiquinone oxidor 98.1 7.2E-07 1.6E-11 78.1 0.7 54 314-373 110-168 (212)
102 TIGR03315 Se_ygfK putative sel 98.1 6.7E-06 1.4E-10 91.8 7.9 58 313-374 879-940 (1012)
103 COG1145 NapF Ferredoxin [Energ 98.1 1.7E-06 3.7E-11 69.7 2.4 59 312-376 26-84 (99)
104 TIGR01971 NuoI NADH-quinone ox 98.1 1.9E-06 4.1E-11 73.0 2.7 56 314-375 42-102 (122)
105 PRK14993 tetrathionate reducta 98.1 2.1E-06 4.6E-11 81.6 3.2 57 313-377 96-152 (244)
106 PRK08764 ferredoxin; Provision 98.1 2.5E-06 5.4E-11 73.9 3.1 58 308-375 78-135 (135)
107 PRK06991 ferredoxin; Provision 98.1 2.4E-06 5.2E-11 82.2 3.2 55 311-375 81-135 (270)
108 PRK07118 ferredoxin; Validated 98.0 3.1E-06 6.8E-11 82.0 3.7 54 314-378 212-265 (280)
109 TIGR00402 napF ferredoxin-type 98.0 2.5E-06 5.4E-11 70.1 2.5 53 313-373 32-84 (101)
110 PRK10330 formate dehydrogenase 98.0 2.9E-06 6.3E-11 77.0 2.9 53 314-375 55-107 (181)
111 PRK10194 ferredoxin-type prote 98.0 4.1E-06 8.9E-11 74.7 3.6 53 325-377 108-160 (163)
112 TIGR03224 benzo_boxA benzoyl-C 98.0 2.8E-06 6E-11 86.8 2.7 52 312-374 7-58 (411)
113 PF00037 Fer4: 4Fe-4S binding 98.0 3E-06 6.6E-11 51.2 1.7 24 350-373 1-24 (24)
114 PRK09898 hypothetical protein; 98.0 1.1E-05 2.3E-10 75.0 6.1 56 313-375 119-174 (208)
115 TIGR02066 dsrB sulfite reducta 98.0 1.8E-06 3.9E-11 85.9 0.8 47 326-373 186-232 (341)
116 PRK09477 napH quinol dehydroge 98.0 3.9E-06 8.4E-11 81.1 3.0 60 308-375 201-262 (271)
117 PRK13409 putative ATPase RIL; 98.0 5E-06 1.1E-10 88.7 3.6 63 308-378 3-73 (590)
118 COG1149 MinD superfamily P-loo 97.9 4.8E-06 1E-10 79.2 2.4 56 312-377 66-121 (284)
119 TIGR02951 DMSO_dmsB DMSO reduc 97.9 7.5E-06 1.6E-10 72.9 3.5 58 314-378 61-118 (161)
120 TIGR02700 flavo_MJ0208 archaeo 97.9 4.3E-06 9.3E-11 79.0 2.0 50 313-373 146-195 (234)
121 PRK10882 hydrogenase 2 protein 97.9 6.6E-06 1.4E-10 81.3 3.2 56 313-375 108-163 (328)
122 TIGR02912 sulfite_red_C sulfit 97.9 4.9E-06 1.1E-10 82.0 2.0 51 312-373 166-219 (314)
123 PF12837 Fer4_6: 4Fe-4S bindin 97.9 1.9E-06 4.2E-11 52.0 -0.5 23 350-372 2-24 (24)
124 COG2768 Uncharacterized Fe-S c 97.8 5.9E-06 1.3E-10 79.3 1.4 51 313-375 191-243 (354)
125 CHL00014 ndhI NADH dehydrogena 97.8 7.4E-06 1.6E-10 73.5 2.0 57 313-375 57-119 (167)
126 PRK08318 dihydropyrimidine deh 97.8 1.3E-05 2.7E-10 82.2 3.8 58 312-377 339-400 (420)
127 PRK12769 putative oxidoreducta 97.8 1.4E-05 3.1E-10 86.3 3.8 55 313-376 52-106 (654)
128 TIGR02512 Fe_only_hydrog hydro 97.8 5.8E-06 1.3E-10 83.4 0.5 59 311-375 3-70 (374)
129 PRK14028 pyruvate ferredoxin o 97.8 8.5E-06 1.9E-10 80.2 1.6 59 311-375 243-309 (312)
130 PRK09476 napG quinol dehydroge 97.8 2.5E-05 5.4E-10 74.7 4.5 74 312-386 134-220 (254)
131 COG2221 DsrA Dissimilatory sul 97.7 9E-06 2E-10 78.8 0.8 46 312-368 169-214 (317)
132 TIGR00397 mauM_napG MauM/NapG 97.7 4E-05 8.6E-10 71.5 4.6 65 312-377 128-199 (213)
133 PRK13795 hypothetical protein; 97.7 1.4E-05 2.9E-10 86.0 1.4 56 310-374 576-631 (636)
134 PRK08255 salicylyl-CoA 5-hydro 97.7 0.00085 1.8E-08 73.9 15.4 60 157-216 260-324 (765)
135 PRK10194 ferredoxin-type prote 97.7 1.3E-05 2.7E-10 71.6 0.8 56 313-375 64-124 (163)
136 KOG1298 Squalene monooxygenase 97.6 0.00081 1.8E-08 67.1 12.9 168 4-194 175-358 (509)
137 cd07030 RNAP_D D subunit of Ar 97.6 4E-05 8.6E-10 73.5 3.7 55 315-379 169-223 (259)
138 PRK09898 hypothetical protein; 97.6 3.1E-05 6.7E-10 71.9 2.6 54 310-376 149-202 (208)
139 TIGR03287 methan_mark_16 putat 97.6 2.3E-05 5.1E-10 78.6 1.8 52 312-377 299-352 (391)
140 TIGR03294 FrhG coenzyme F420 h 97.6 1.8E-05 3.8E-10 74.6 0.8 52 311-373 170-221 (228)
141 PRK12809 putative oxidoreducta 97.6 2.7E-05 5.9E-10 83.9 2.1 54 313-375 52-105 (639)
142 PRK13984 putative oxidoreducta 97.6 3.5E-05 7.6E-10 82.4 2.5 58 312-375 42-106 (604)
143 TIGR02176 pyruv_ox_red pyruvat 97.6 4.1E-05 8.9E-10 87.2 3.1 61 309-375 677-761 (1165)
144 PRK00783 DNA-directed RNA poly 97.6 5.3E-05 1.2E-09 72.8 3.5 53 314-376 168-220 (263)
145 TIGR00397 mauM_napG MauM/NapG 97.5 0.0001 2.3E-09 68.7 4.1 61 313-377 89-160 (213)
146 PRK07569 bidirectional hydroge 97.5 5.8E-05 1.3E-09 71.3 2.4 59 311-375 142-210 (234)
147 TIGR03149 cyt_nit_nrfC cytochr 97.4 8.4E-05 1.8E-09 69.9 3.1 54 311-377 121-184 (225)
148 PF12797 Fer4_2: 4Fe-4S bindin 97.4 4.7E-05 1E-09 44.7 0.6 21 349-369 2-22 (22)
149 PRK07118 ferredoxin; Validated 97.4 5.7E-05 1.2E-09 73.3 1.6 49 316-375 140-188 (280)
150 COG1148 HdrA Heterodisulfide r 97.4 5.3E-05 1.1E-09 77.2 0.9 50 312-375 558-607 (622)
151 PF13484 Fer4_16: 4Fe-4S doubl 97.4 2.7E-05 5.8E-10 58.7 -1.0 44 327-370 6-67 (67)
152 PRK12769 putative oxidoreducta 97.3 0.0002 4.3E-09 77.4 4.3 61 311-377 81-147 (654)
153 PRK09326 F420H2 dehydrogenase 97.3 8.1E-05 1.8E-09 74.2 1.2 56 311-372 8-70 (341)
154 PRK10330 formate dehydrogenase 97.3 0.00012 2.6E-09 66.4 2.2 59 312-376 84-156 (181)
155 PRK09853 putative selenate red 97.3 0.00015 3.2E-09 81.1 2.7 57 312-371 883-942 (1019)
156 TIGR03478 DMSO_red_II_bet DMSO 97.2 8.5E-05 1.8E-09 72.5 0.6 54 309-375 156-218 (321)
157 KOG3855 Monooxygenase involved 97.2 0.0021 4.5E-08 64.7 9.9 60 152-211 360-425 (481)
158 PF13247 Fer4_11: 4Fe-4S diclu 97.2 0.00012 2.6E-09 59.9 0.9 55 308-375 33-96 (98)
159 PRK14993 tetrathionate reducta 97.2 0.00013 2.8E-09 69.5 1.2 54 309-375 124-186 (244)
160 TIGR02064 dsrA sulfite reducta 97.2 0.00017 3.7E-09 73.3 1.8 42 327-373 248-289 (402)
161 PRK10882 hydrogenase 2 protein 97.2 0.00013 2.9E-09 72.1 0.9 53 311-374 139-204 (328)
162 PRK09476 napG quinol dehydroge 97.2 0.00032 6.8E-09 67.2 3.4 58 315-376 97-165 (254)
163 TIGR02951 DMSO_dmsB DMSO reduc 97.1 0.00024 5.2E-09 63.2 2.2 54 310-376 90-152 (161)
164 PRK08493 NADH dehydrogenase su 97.1 0.00021 4.5E-09 78.6 1.6 57 310-374 136-223 (819)
165 TIGR03336 IOR_alpha indolepyru 97.0 0.00033 7.1E-09 75.0 2.2 51 307-372 543-595 (595)
166 TIGR01582 FDH-beta formate deh 97.0 0.00024 5.1E-09 69.0 0.7 54 309-375 118-180 (283)
167 COG2878 Predicted NADH:ubiquin 96.9 0.00015 3.2E-09 64.9 -1.3 68 299-376 99-166 (198)
168 COG0437 HybA Fe-S-cluster-cont 96.9 0.00058 1.3E-08 62.9 2.4 55 307-374 92-155 (203)
169 COG3383 Uncharacterized anaero 96.8 0.00055 1.2E-08 73.0 2.2 73 304-382 138-219 (978)
170 COG4231 Indolepyruvate ferredo 96.7 0.00051 1.1E-08 72.1 1.1 54 309-374 572-627 (640)
171 PRK12387 formate hydrogenlyase 96.7 0.00088 1.9E-08 60.7 2.3 50 326-377 11-60 (180)
172 PF12800 Fer4_4: 4Fe-4S bindin 96.6 0.0011 2.4E-08 36.6 1.5 17 354-370 1-17 (17)
173 TIGR02163 napH_ ferredoxin-typ 96.6 0.0014 3E-08 62.8 3.1 48 327-374 172-220 (255)
174 TIGR02486 RDH reductive dehalo 96.5 0.0015 3.3E-08 64.4 2.6 50 315-370 205-279 (314)
175 TIGR02745 ccoG_rdxA_fixG cytoc 96.5 0.0012 2.7E-08 67.7 1.8 40 314-369 230-269 (434)
176 PRK12809 putative oxidoreducta 96.5 0.0014 3.1E-08 70.6 2.3 52 311-377 81-139 (639)
177 PRK09477 napH quinol dehydroge 96.4 0.00072 1.6E-08 65.3 -0.2 47 327-373 179-226 (271)
178 PF14697 Fer4_21: 4Fe-4S diclu 96.4 0.002 4.3E-08 47.7 2.1 25 351-375 2-26 (59)
179 COG2509 Uncharacterized FAD-de 96.4 0.12 2.5E-06 53.1 15.2 57 6-68 203-261 (486)
180 TIGR01973 NuoG NADH-quinone ox 96.4 0.0028 6.1E-08 67.9 3.9 61 306-373 133-200 (603)
181 COG1148 HdrA Heterodisulfide r 96.3 0.0014 3E-08 67.1 1.0 55 315-375 224-291 (622)
182 PRK05035 electron transport co 96.3 0.0011 2.4E-08 71.8 0.2 52 313-370 368-424 (695)
183 KOG0063 RNAse L inhibitor, ABC 96.2 0.002 4.3E-08 65.2 1.8 57 308-373 7-68 (592)
184 PF12798 Fer4_3: 4Fe-4S bindin 96.2 0.0012 2.7E-08 35.2 0.0 15 357-371 1-15 (15)
185 TIGR01660 narH nitrate reducta 96.1 0.0021 4.5E-08 65.6 1.2 53 309-374 208-269 (492)
186 PRK07860 NADH dehydrogenase su 95.9 0.0051 1.1E-07 68.1 3.3 59 308-373 143-208 (797)
187 TIGR01945 rnfC electron transp 95.9 0.0035 7.5E-08 64.6 1.5 53 313-371 361-418 (435)
188 PRK09129 NADH dehydrogenase su 95.8 0.0063 1.4E-07 67.2 3.5 59 310-375 139-204 (776)
189 COG1142 HycB Fe-S-cluster-cont 95.6 0.0055 1.2E-07 54.7 1.6 57 311-376 78-140 (165)
190 PRK08166 NADH dehydrogenase su 95.6 0.0093 2E-07 66.5 3.8 58 309-375 143-209 (847)
191 PRK09626 oorD 2-oxoglutarate-a 95.5 0.0073 1.6E-07 49.6 1.7 28 349-376 10-37 (103)
192 PF13237 Fer4_10: 4Fe-4S diclu 95.4 0.0074 1.6E-07 42.9 1.5 21 349-369 1-21 (52)
193 PRK08222 hydrogenase 4 subunit 95.3 0.0087 1.9E-07 54.4 1.8 47 327-375 12-58 (181)
194 PRK13984 putative oxidoreducta 95.2 0.014 3.1E-07 62.5 3.5 26 311-342 82-107 (604)
195 PF12837 Fer4_6: 4Fe-4S bindin 95.2 0.0033 7.2E-08 37.9 -0.9 22 311-338 3-24 (24)
196 TIGR00314 cdhA CO dehydrogenas 95.1 0.0047 1E-07 67.1 -0.7 51 313-370 397-452 (784)
197 COG1941 FrhG Coenzyme F420-red 95.0 0.017 3.7E-07 54.2 2.8 97 266-380 118-215 (247)
198 TIGR02936 fdxN_nitrog ferredox 95.0 0.0099 2.2E-07 47.4 1.1 27 349-375 15-41 (91)
199 PRK09130 NADH dehydrogenase su 95.0 0.016 3.6E-07 63.0 3.0 59 308-373 138-203 (687)
200 COG1145 NapF Ferredoxin [Energ 94.9 0.01 2.2E-07 47.4 1.0 26 349-374 23-48 (99)
201 TIGR00273 iron-sulfur cluster- 94.9 0.016 3.4E-07 59.8 2.3 18 354-371 342-359 (432)
202 TIGR02179 PorD_KorD 2-oxoacid: 94.8 0.014 2.9E-07 45.2 1.4 27 349-375 19-45 (78)
203 COG2221 DsrA Dissimilatory sul 94.8 0.0064 1.4E-07 59.3 -0.6 28 348-375 165-192 (317)
204 PRK08348 NADH-plastoquinone ox 94.7 0.015 3.3E-07 49.0 1.5 27 349-375 36-62 (120)
205 PRK12814 putative NADPH-depend 94.7 0.012 2.7E-07 63.7 1.1 38 160-202 465-502 (652)
206 PTZ00305 NADH:ubiquinone oxido 94.7 0.039 8.4E-07 53.5 4.3 55 312-373 209-271 (297)
207 PRK09193 indolepyruvate ferred 94.6 0.03 6.5E-07 63.8 4.1 53 308-370 637-692 (1165)
208 TIGR00403 ndhI NADH-plastoquin 94.6 0.021 4.6E-07 52.0 2.4 25 349-373 56-80 (183)
209 TIGR00276 iron-sulfur cluster 94.6 0.0094 2E-07 57.9 -0.0 54 314-373 158-227 (282)
210 PF00037 Fer4: 4Fe-4S binding 94.6 0.014 3E-07 35.1 0.7 22 312-339 3-24 (24)
211 COG1144 Pyruvate:ferredoxin ox 94.6 0.025 5.4E-07 45.1 2.3 37 349-386 29-66 (91)
212 PRK15033 tricarballylate utili 94.5 0.0084 1.8E-07 60.3 -0.5 49 314-369 32-81 (389)
213 PRK13030 2-oxoacid ferredoxin 94.5 0.032 7E-07 63.6 3.9 52 308-369 623-677 (1159)
214 COG1034 NuoG NADH dehydrogenas 94.4 0.019 4.2E-07 62.0 1.8 67 301-373 130-202 (693)
215 PRK00941 acetyl-CoA decarbonyl 94.3 0.0077 1.7E-07 65.5 -1.6 51 313-371 402-458 (781)
216 PF12838 Fer4_7: 4Fe-4S diclus 94.2 0.011 2.4E-07 42.1 -0.5 23 356-378 1-23 (52)
217 PRK06273 ferredoxin; Provision 94.1 0.016 3.6E-07 51.8 0.4 27 349-375 43-69 (165)
218 COG1139 Uncharacterized conser 94.1 0.023 4.9E-07 57.6 1.3 61 304-370 283-373 (459)
219 COG1600 Uncharacterized Fe-S p 94.0 0.015 3.2E-07 57.7 -0.0 56 315-378 185-255 (337)
220 cd01916 ACS_1 Acetyl-CoA synth 94.0 0.01 2.2E-07 64.4 -1.2 53 313-371 363-419 (731)
221 PRK13029 2-oxoacid ferredoxin 93.9 0.051 1.1E-06 61.9 3.8 50 311-369 653-705 (1186)
222 PRK09625 porD pyruvate flavodo 93.8 0.021 4.7E-07 49.2 0.5 26 349-374 53-78 (133)
223 PF13187 Fer4_9: 4Fe-4S diclus 93.7 0.035 7.5E-07 39.8 1.5 25 356-380 1-25 (55)
224 COG4656 RnfC Predicted NADH:ub 93.7 0.014 3E-07 60.4 -0.9 49 316-370 366-419 (529)
225 TIGR02745 ccoG_rdxA_fixG cytoc 93.7 0.018 3.9E-07 59.3 -0.2 43 327-373 182-248 (434)
226 TIGR00384 dhsB succinate dehyd 93.6 0.03 6.4E-07 52.4 1.3 53 313-371 136-210 (220)
227 PRK07570 succinate dehydrogena 93.5 0.034 7.3E-07 53.2 1.3 54 312-371 154-228 (250)
228 PLN00071 photosystem I subunit 93.4 0.033 7.2E-07 43.4 1.1 26 350-375 4-29 (81)
229 TIGR02494 PFLE_PFLC glycyl-rad 93.4 0.044 9.5E-07 53.2 2.0 26 349-374 42-67 (295)
230 TIGR03048 PS_I_psaC photosyste 93.2 0.04 8.7E-07 42.9 1.2 28 349-376 2-29 (80)
231 PRK14028 pyruvate ferredoxin o 93.2 0.079 1.7E-06 52.1 3.5 41 333-373 225-265 (312)
232 COG1143 NuoI Formate hydrogenl 93.1 0.045 9.8E-07 49.3 1.5 27 349-375 49-75 (172)
233 COG1140 NarY Nitrate reductase 93.1 0.058 1.3E-06 53.7 2.3 59 314-379 180-238 (513)
234 TIGR03290 CoB_CoM_SS_C CoB--Co 93.1 0.022 4.8E-07 49.6 -0.5 51 315-371 2-62 (144)
235 PRK09623 vorD 2-ketoisovalerat 93.0 0.048 1E-06 45.0 1.5 28 348-375 44-71 (105)
236 PRK05888 NADH dehydrogenase su 93.0 0.061 1.3E-06 47.9 2.2 23 354-376 57-79 (164)
237 COG1149 MinD superfamily P-loo 92.9 0.045 9.7E-07 52.6 1.2 31 349-380 63-93 (284)
238 CHL00065 psaC photosystem I su 92.8 0.029 6.4E-07 43.8 -0.1 26 350-375 4-29 (81)
239 TIGR03379 glycerol3P_GlpC glyc 92.8 0.043 9.4E-07 55.7 1.0 52 314-371 4-68 (397)
240 PF13484 Fer4_16: 4Fe-4S doubl 92.5 0.024 5.2E-07 42.5 -0.9 20 356-375 1-20 (67)
241 PRK05352 Na(+)-translocating N 92.4 0.038 8.3E-07 57.1 0.1 51 314-370 373-430 (448)
242 PRK11168 glpC sn-glycerol-3-ph 92.2 0.058 1.3E-06 54.6 1.1 53 313-371 5-70 (396)
243 COG1146 Ferredoxin [Energy pro 92.2 0.09 1.9E-06 39.7 1.9 30 349-378 2-31 (68)
244 TIGR01971 NuoI NADH-quinone ox 92.1 0.085 1.8E-06 44.4 1.8 22 354-375 42-63 (122)
245 PF13370 Fer4_13: 4Fe-4S singl 92.0 0.036 7.7E-07 40.7 -0.5 53 313-374 2-58 (58)
246 COG1141 Fer Ferredoxin [Energy 92.0 0.091 2E-06 40.0 1.7 56 311-375 4-67 (68)
247 PRK12576 succinate dehydrogena 91.7 0.048 1E-06 53.0 -0.2 55 311-371 148-222 (279)
248 PF13534 Fer4_17: 4Fe-4S diclu 91.6 0.0057 1.2E-07 45.0 -5.3 42 327-370 6-59 (61)
249 TIGR02910 sulfite_red_A sulfit 91.5 0.13 2.8E-06 51.2 2.6 20 351-370 297-316 (334)
250 PRK09624 porD pyuvate ferredox 91.4 0.08 1.7E-06 43.8 0.9 27 349-375 45-71 (105)
251 CHL00014 ndhI NADH dehydrogena 91.2 0.13 2.9E-06 46.0 2.2 25 349-373 53-77 (167)
252 PRK00711 D-amino acid dehydrog 91.1 7.8 0.00017 39.0 15.2 36 7-45 232-267 (416)
253 PF13183 Fer4_8: 4Fe-4S diclus 91.1 0.0016 3.5E-08 47.2 -8.6 50 315-370 3-56 (57)
254 PRK02651 photosystem I subunit 91.1 0.093 2E-06 40.8 0.9 26 350-375 4-29 (81)
255 PRK06991 ferredoxin; Provision 90.7 0.1 2.2E-06 50.5 0.9 26 349-374 79-104 (270)
256 TIGR01944 rnfB electron transp 90.7 0.14 3E-06 45.8 1.8 27 349-375 107-133 (165)
257 TIGR02352 thiamin_ThiO glycine 90.6 4.1 8.8E-05 39.4 12.3 157 7-197 168-334 (337)
258 PRK12385 fumarate reductase ir 90.5 0.074 1.6E-06 50.6 -0.1 16 355-370 203-218 (244)
259 PRK15055 anaerobic sulfite red 90.5 0.19 4.2E-06 50.2 2.7 17 354-370 306-322 (344)
260 TIGR02484 CitB CitB domain pro 90.3 0.054 1.2E-06 54.3 -1.4 51 314-371 13-64 (372)
261 TIGR01936 nqrA NADH:ubiquinone 90.2 0.075 1.6E-06 54.9 -0.5 51 314-370 372-429 (447)
262 PF13459 Fer4_15: 4Fe-4S singl 90.1 0.1 2.2E-06 39.0 0.4 54 312-374 3-65 (65)
263 PRK11274 glcF glycolate oxidas 89.9 0.15 3.2E-06 52.0 1.4 49 315-371 23-89 (407)
264 PRK05113 electron transport co 89.6 0.17 3.7E-06 46.4 1.4 26 349-374 108-133 (191)
265 KOG3256 NADH:ubiquinone oxidor 89.5 0.089 1.9E-06 46.6 -0.5 26 353-378 109-136 (212)
266 PF12797 Fer4_2: 4Fe-4S bindin 89.3 0.14 3E-06 30.2 0.4 19 311-335 4-22 (22)
267 TIGR02700 flavo_MJ0208 archaeo 89.1 0.17 3.6E-06 47.9 1.0 27 349-375 142-168 (234)
268 COG0348 NapH Polyferredoxin [E 88.9 0.25 5.3E-06 50.3 2.2 48 327-379 218-269 (386)
269 TIGR03294 FrhG coenzyme F420 h 88.9 0.15 3.3E-06 48.0 0.6 27 349-375 168-194 (228)
270 COG1152 CdhA CO dehydrogenase/ 88.8 0.079 1.7E-06 55.4 -1.4 48 315-370 400-453 (772)
271 PRK12577 succinate dehydrogena 88.8 0.071 1.5E-06 53.0 -1.8 17 355-371 209-225 (329)
272 COG1141 Fer Ferredoxin [Energy 87.3 0.26 5.7E-06 37.5 0.9 21 349-369 2-22 (68)
273 PRK12386 fumarate reductase ir 87.3 0.3 6.5E-06 46.7 1.5 17 354-370 199-215 (251)
274 COG1150 HdrC Heterodisulfide r 87.2 0.068 1.5E-06 48.8 -2.8 51 315-371 39-99 (195)
275 PRK08640 sdhB succinate dehydr 86.9 0.14 3E-06 48.9 -1.0 17 355-371 209-225 (249)
276 TIGR02176 pyruv_ox_red pyruvat 86.7 0.24 5.3E-06 57.1 0.7 26 349-374 677-702 (1165)
277 PF13746 Fer4_18: 4Fe-4S diclu 86.2 0.32 6.9E-06 37.0 0.9 20 352-371 47-66 (69)
278 COG0665 DadA Glycine/D-amino a 86.2 15 0.00033 36.3 13.2 164 8-198 188-366 (387)
279 TIGR00402 napF ferredoxin-type 85.6 0.28 6.1E-06 40.1 0.3 26 350-375 29-54 (101)
280 PRK05950 sdhB succinate dehydr 85.6 0.24 5.1E-06 46.7 -0.1 17 355-371 198-214 (232)
281 PRK00783 DNA-directed RNA poly 85.5 0.39 8.4E-06 46.2 1.3 44 327-375 146-189 (263)
282 PF13459 Fer4_15: 4Fe-4S singl 85.1 0.35 7.5E-06 36.1 0.6 19 350-368 1-19 (65)
283 TIGR00292 thiazole biosynthesi 84.7 0.59 1.3E-05 44.7 2.1 29 17-45 155-183 (254)
284 PRK06259 succinate dehydrogena 84.6 0.36 7.8E-06 50.4 0.7 53 313-371 131-201 (486)
285 PLN03000 amine oxidase 84.4 7.6 0.00017 43.6 10.8 38 162-202 588-625 (881)
286 COG1035 FrhB Coenzyme F420-red 84.3 0.41 8.8E-06 47.6 0.8 47 312-369 2-48 (332)
287 COG2878 Predicted NADH:ubiquin 84.0 0.38 8.3E-06 43.5 0.4 26 348-373 108-133 (198)
288 TIGR03197 MnmC_Cterm tRNA U-34 83.8 7.5 0.00016 38.9 9.8 21 177-197 340-360 (381)
289 PRK13795 hypothetical protein; 83.6 0.53 1.1E-05 51.0 1.4 27 349-375 575-601 (636)
290 TIGR03287 methan_mark_16 putat 83.5 0.61 1.3E-05 47.3 1.7 25 349-373 296-322 (391)
291 PRK12575 succinate dehydrogena 83.4 0.31 6.7E-06 46.2 -0.4 17 355-371 201-217 (235)
292 PRK08764 ferredoxin; Provision 83.4 0.45 9.7E-06 41.1 0.6 23 352-374 82-104 (135)
293 PRK08318 dihydropyrimidine deh 82.5 0.72 1.6E-05 47.3 1.8 28 348-375 335-365 (420)
294 PF13370 Fer4_13: 4Fe-4S singl 80.9 0.5 1.1E-05 34.6 0.0 18 352-369 1-18 (58)
295 COG1941 FrhG Coenzyme F420-red 80.9 0.52 1.1E-05 44.4 0.1 45 314-371 189-233 (247)
296 TIGR02912 sulfite_red_C sulfit 80.9 0.59 1.3E-05 46.0 0.5 27 349-375 163-192 (314)
297 PF13183 Fer4_8: 4Fe-4S diclus 80.8 0.24 5.3E-06 35.5 -1.7 16 354-369 2-17 (57)
298 cd07032 RNAP_I_II_AC40 AC40 su 80.8 0.95 2.1E-05 44.2 1.9 47 327-373 203-250 (291)
299 PRK07569 bidirectional hydroge 80.5 0.91 2E-05 42.8 1.6 28 349-376 140-169 (234)
300 PLN00129 succinate dehydrogena 80.4 0.38 8.3E-06 46.6 -1.0 18 354-371 243-260 (276)
301 TIGR00276 iron-sulfur cluster 79.8 0.53 1.1E-05 45.8 -0.3 20 354-373 158-177 (282)
302 PF01266 DAO: FAD dependent ox 79.5 51 0.0011 31.6 13.7 37 6-45 177-213 (358)
303 COG2768 Uncharacterized Fe-S c 78.9 0.88 1.9E-05 44.4 1.0 27 349-375 187-213 (354)
304 PRK13552 frdB fumarate reducta 78.6 0.52 1.1E-05 44.7 -0.6 18 354-371 205-222 (239)
305 TIGR01373 soxB sarcosine oxida 78.1 53 0.0012 32.9 13.8 22 177-198 363-384 (407)
306 PRK07570 succinate dehydrogena 77.6 1.1 2.4E-05 42.8 1.2 22 351-372 153-174 (250)
307 COG0247 GlpC Fe-S oxidoreducta 77.0 0.52 1.1E-05 47.3 -1.3 51 314-371 8-74 (388)
308 PRK15055 anaerobic sulfite red 76.2 1.3 2.8E-05 44.3 1.3 16 314-335 225-240 (344)
309 PRK04176 ribulose-1,5-biphosph 75.9 3.6 7.7E-05 39.4 4.2 26 17-42 158-183 (257)
310 PRK08493 NADH dehydrogenase su 75.5 1.6 3.5E-05 48.6 1.9 38 326-363 209-248 (819)
311 TIGR02486 RDH reductive dehalo 75.1 1 2.2E-05 44.6 0.2 20 354-373 204-223 (314)
312 COG1150 HdrC Heterodisulfide r 74.8 1.2 2.6E-05 40.8 0.6 19 354-372 38-56 (195)
313 cd07030 RNAP_D D subunit of Ar 74.7 1.9 4.1E-05 41.3 2.0 40 328-374 147-188 (259)
314 TIGR03377 glycerol3P_GlpA glyc 74.7 99 0.0021 32.4 15.1 26 17-45 175-200 (516)
315 COG1453 Predicted oxidoreducta 72.6 1.4 3.1E-05 44.2 0.5 18 353-370 349-366 (391)
316 TIGR01292 TRX_reduct thioredox 72.4 4.1 8.8E-05 38.6 3.7 37 159-199 263-299 (300)
317 COG0479 FrdB Succinate dehydro 71.9 1.4 3.1E-05 41.6 0.4 52 313-370 140-213 (234)
318 PRK11259 solA N-methyltryptoph 71.9 35 0.00076 33.6 10.4 38 161-198 317-359 (376)
319 TIGR00273 iron-sulfur cluster- 71.4 1.5 3.3E-05 45.2 0.6 19 353-371 291-309 (432)
320 TIGR02910 sulfite_red_A sulfit 70.9 1.7 3.7E-05 43.3 0.7 16 354-369 219-234 (334)
321 PRK05035 electron transport co 70.5 1.5 3.2E-05 48.0 0.2 20 353-372 368-387 (695)
322 PRK12576 succinate dehydrogena 69.5 2.2 4.7E-05 41.5 1.1 21 352-372 149-169 (279)
323 PRK12386 fumarate reductase ir 69.4 2 4.3E-05 41.1 0.8 19 353-371 140-158 (251)
324 PRK08640 sdhB succinate dehydr 69.4 2 4.3E-05 41.1 0.8 19 353-371 150-168 (249)
325 PF01593 Amino_oxidase: Flavin 69.3 6.3 0.00014 38.7 4.4 33 162-197 418-450 (450)
326 PRK07233 hypothetical protein; 69.1 6.4 0.00014 39.6 4.5 38 161-201 395-432 (434)
327 TIGR00384 dhsB succinate dehyd 67.8 2.1 4.7E-05 39.9 0.7 19 353-371 136-154 (220)
328 PRK01747 mnmC bifunctional tRN 67.1 24 0.00052 38.3 8.7 21 177-197 611-631 (662)
329 TIGR03169 Nterm_to_SelD pyridi 65.7 8.8 0.00019 38.0 4.6 43 160-202 270-312 (364)
330 PF13534 Fer4_17: 4Fe-4S diclu 64.4 2.4 5.2E-05 30.7 0.2 16 356-371 1-16 (61)
331 PRK09853 putative selenate red 63.9 3.4 7.4E-05 47.0 1.4 27 352-378 883-914 (1019)
332 TIGR01945 rnfC electron transp 62.9 3 6.5E-05 43.1 0.7 20 352-371 360-379 (435)
333 PRK12575 succinate dehydrogena 62.8 2.8 6.2E-05 39.7 0.4 20 353-372 142-161 (235)
334 PRK12266 glpD glycerol-3-phosp 62.5 2.1E+02 0.0045 30.1 16.0 16 17-32 201-216 (508)
335 PRK13369 glycerol-3-phosphate 62.5 2E+02 0.0044 30.0 16.9 107 91-201 261-379 (502)
336 PRK12385 fumarate reductase ir 62.5 2.7 5.9E-05 40.0 0.3 19 353-371 145-163 (244)
337 COG1600 Uncharacterized Fe-S p 61.3 2.6 5.6E-05 42.1 -0.1 19 355-373 185-203 (337)
338 PLN00129 succinate dehydrogena 61.2 3.4 7.4E-05 40.1 0.7 19 353-371 185-203 (276)
339 PTZ00305 NADH:ubiquinone oxido 60.0 2.8 6.1E-05 40.9 -0.1 21 349-369 206-226 (297)
340 PRK09754 phenylpropionate diox 60.0 8.1 0.00017 39.0 3.2 38 159-197 265-307 (396)
341 PRK12577 succinate dehydrogena 58.6 4.1 9E-05 40.5 0.8 18 354-371 151-168 (329)
342 PLN02976 amine oxidase 58.3 15 0.00033 43.5 5.3 54 158-214 1147-1207(1713)
343 PRK08166 NADH dehydrogenase su 58.3 5.7 0.00012 44.6 1.9 38 325-362 193-233 (847)
344 PRK12771 putative glutamate sy 57.7 3.5 7.6E-05 43.9 0.1 38 160-202 408-445 (564)
345 PLN02612 phytoene desaturase 57.2 12 0.00027 39.9 4.2 38 161-201 512-549 (567)
346 PRK13552 frdB fumarate reducta 57.1 3.8 8.2E-05 38.9 0.2 19 353-371 147-165 (239)
347 PTZ00318 NADH dehydrogenase-li 56.6 17 0.00038 37.0 5.0 43 160-202 307-349 (424)
348 PRK05950 sdhB succinate dehydr 56.0 4.3 9.2E-05 38.2 0.4 19 353-371 139-157 (232)
349 PRK12416 protoporphyrinogen ox 55.7 16 0.00035 37.5 4.6 34 162-201 429-462 (463)
350 COG1139 Uncharacterized conser 55.0 3.6 7.9E-05 42.1 -0.3 14 356-369 309-322 (459)
351 PRK09129 NADH dehydrogenase su 53.7 4.4 9.4E-05 45.0 0.0 21 348-368 137-157 (776)
352 TIGR03315 Se_ygfK putative sel 53.4 5.1 0.00011 45.8 0.5 20 353-372 879-902 (1012)
353 PRK00941 acetyl-CoA decarbonyl 53.3 5.9 0.00013 43.7 1.0 22 350-371 399-420 (781)
354 KOG1346 Programmed cell death 53.1 2.8 6E-05 43.0 -1.5 41 160-200 476-520 (659)
355 TIGR00314 cdhA CO dehydrogenas 53.1 4.9 0.00011 44.3 0.3 20 352-371 396-415 (784)
356 PRK12409 D-amino acid dehydrog 52.9 2.5E+02 0.0054 28.1 14.4 21 178-198 385-405 (410)
357 COG0479 FrdB Succinate dehydro 52.3 5.1 0.00011 37.9 0.2 19 353-371 140-158 (234)
358 PF13746 Fer4_18: 4Fe-4S diclu 52.3 5.7 0.00012 30.1 0.4 19 313-337 48-66 (69)
359 TIGR02060 aprB adenosine phosp 51.9 6.6 0.00014 33.8 0.8 25 312-342 42-66 (132)
360 TIGR03336 IOR_alpha indolepyru 51.8 8.6 0.00019 41.3 1.9 21 349-369 544-566 (595)
361 cd01916 ACS_1 Acetyl-CoA synth 51.6 6.9 0.00015 43.0 1.1 23 349-371 359-381 (731)
362 PRK06259 succinate dehydrogena 51.2 6.5 0.00014 41.1 0.8 20 353-372 131-150 (486)
363 TIGR01936 nqrA NADH:ubiquinone 51.1 6.1 0.00013 41.0 0.6 18 353-370 371-388 (447)
364 PRK12810 gltD glutamate syntha 51.0 21 0.00047 37.0 4.7 39 159-202 428-466 (471)
365 PLN02268 probable polyamine ox 50.7 16 0.00036 37.1 3.7 36 162-200 399-434 (435)
366 PRK11883 protoporphyrinogen ox 50.6 20 0.00044 36.2 4.4 32 161-198 419-450 (451)
367 COG1252 Ndh NADH dehydrogenase 49.9 25 0.00054 36.1 4.8 41 159-202 289-333 (405)
368 TIGR02730 carot_isom carotene 49.7 21 0.00046 37.1 4.4 35 160-199 457-491 (493)
369 PF06902 Fer4_19: Divergent 4F 49.4 19 0.0004 27.0 2.8 9 366-374 53-61 (64)
370 TIGR01973 NuoG NADH-quinone ox 49.3 5.7 0.00012 42.7 0.1 21 348-368 135-155 (603)
371 TIGR00562 proto_IX_ox protopor 49.3 23 0.00049 36.2 4.5 34 161-200 427-460 (462)
372 PRK12770 putative glutamate sy 48.8 26 0.00056 34.7 4.7 36 160-200 314-349 (352)
373 PRK12831 putative oxidoreducta 48.0 26 0.00056 36.4 4.7 38 159-201 424-461 (464)
374 PRK06175 L-aspartate oxidase; 48.0 48 0.001 34.0 6.7 42 159-200 342-387 (433)
375 PRK09564 coenzyme A disulfide 47.6 15 0.00033 37.4 2.9 39 159-197 272-315 (444)
376 PRK11749 dihydropyrimidine deh 47.5 25 0.00054 36.3 4.5 38 160-202 416-453 (457)
377 PRK12779 putative bifunctional 46.8 22 0.00047 40.6 4.2 57 160-223 591-647 (944)
378 PRK07860 NADH dehydrogenase su 46.7 11 0.00024 42.0 1.9 42 324-365 193-237 (797)
379 PRK09130 NADH dehydrogenase su 46.6 13 0.00028 40.8 2.3 40 324-363 188-229 (687)
380 PRK05352 Na(+)-translocating N 46.0 8.3 0.00018 40.1 0.7 18 353-370 372-389 (448)
381 TIGR02066 dsrB sulfite reducta 45.9 12 0.00026 37.4 1.8 24 311-340 210-233 (341)
382 PF01946 Thi4: Thi4 family; PD 45.7 19 0.00041 33.9 2.9 29 17-45 150-178 (230)
383 PRK13409 putative ATPase RIL; 45.5 13 0.00027 40.1 1.9 28 309-342 43-70 (590)
384 TIGR01317 GOGAT_sm_gam glutama 45.3 28 0.00062 36.3 4.5 40 158-202 441-480 (485)
385 PLN02487 zeta-carotene desatur 44.8 1E+02 0.0022 33.1 8.7 39 159-200 515-553 (569)
386 TIGR02733 desat_CrtD C-3',4' d 42.9 30 0.00066 35.9 4.3 34 160-198 457-490 (492)
387 TIGR01316 gltA glutamate synth 42.2 33 0.00071 35.4 4.4 36 160-200 414-449 (449)
388 TIGR02734 crtI_fam phytoene de 41.4 36 0.00077 35.4 4.5 36 161-201 458-493 (502)
389 PRK11101 glpA sn-glycerol-3-ph 40.9 4.7E+02 0.01 27.7 15.5 26 17-45 196-221 (546)
390 TIGR01372 soxA sarcosine oxida 40.6 36 0.00079 39.0 4.7 37 160-202 437-473 (985)
391 COG1245 Predicted ATPase, RNas 39.8 14 0.0003 38.6 1.1 26 311-342 46-71 (591)
392 PRK06134 putative FAD-binding 39.8 30 0.00065 37.0 3.8 42 160-201 527-572 (581)
393 COG2047 Uncharacterized protei 39.6 99 0.0021 29.2 6.5 82 88-176 115-198 (258)
394 PRK06263 sdhA succinate dehydr 39.6 35 0.00075 36.2 4.2 43 159-201 359-404 (543)
395 PF01976 DUF116: Protein of un 39.2 16 0.00036 32.4 1.4 14 353-366 63-76 (158)
396 PRK12778 putative bifunctional 38.6 39 0.00084 37.4 4.5 38 159-201 713-750 (752)
397 PRK10262 thioredoxin reductase 38.4 20 0.00044 34.8 2.0 40 158-202 276-316 (321)
398 PLN02464 glycerol-3-phosphate 38.4 5.5E+02 0.012 27.8 16.9 16 18-33 282-297 (627)
399 TIGR03385 CoA_CoA_reduc CoA-di 38.3 31 0.00068 35.0 3.5 38 160-197 260-302 (427)
400 PLN02676 polyamine oxidase 37.3 36 0.00078 35.6 3.8 38 162-202 438-475 (487)
401 KOG4258 Insulin/growth factor 36.2 10 0.00022 42.1 -0.5 31 312-342 247-277 (1025)
402 PLN02661 Putative thiazole syn 35.9 43 0.00093 33.8 3.9 40 159-202 284-329 (357)
403 KOG0063 RNAse L inhibitor, ABC 35.9 15 0.00033 38.0 0.7 51 313-373 48-98 (592)
404 PLN02576 protoporphyrinogen ox 35.9 50 0.0011 34.2 4.6 34 162-201 455-488 (496)
405 KOG0404 Thioredoxin reductase 35.5 32 0.0007 32.7 2.7 30 3-32 95-124 (322)
406 PLN02529 lysine-specific histo 35.2 29 0.00063 38.5 2.8 39 160-201 561-599 (738)
407 TIGR03224 benzo_boxA benzoyl-C 33.9 13 0.00029 38.0 -0.0 24 312-341 36-59 (411)
408 TIGR02732 zeta_caro_desat caro 33.8 40 0.00088 35.1 3.5 35 159-196 439-473 (474)
409 COG1034 NuoG NADH dehydrogenas 33.7 15 0.00032 40.3 0.3 41 324-364 187-229 (693)
410 PRK07803 sdhA succinate dehydr 33.7 52 0.0011 35.6 4.4 43 159-201 403-448 (626)
411 COG3383 Uncharacterized anaero 33.4 13 0.00028 40.8 -0.2 22 347-368 141-162 (978)
412 PRK06481 fumarate reductase fl 33.0 52 0.0011 34.5 4.2 41 160-200 460-503 (506)
413 PRK08401 L-aspartate oxidase; 32.9 47 0.001 34.4 3.8 41 159-199 321-365 (466)
414 PLN02568 polyamine oxidase 32.8 47 0.001 35.4 3.8 35 163-200 501-535 (539)
415 COG0578 GlpA Glycerol-3-phosph 32.7 6.4E+02 0.014 27.0 13.2 164 4-184 191-372 (532)
416 TIGR01318 gltD_gamma_fam gluta 32.5 59 0.0013 33.8 4.4 36 160-200 430-465 (467)
417 PF01134 GIDA: Glucose inhibit 32.5 48 0.001 33.9 3.7 37 160-202 354-390 (392)
418 PF12831 FAD_oxidored: FAD dep 32.3 15 0.00032 37.7 0.0 38 3-45 116-158 (428)
419 PRK11728 hydroxyglutarate oxid 31.6 1.7E+02 0.0038 29.1 7.6 31 12-45 184-214 (393)
420 PRK05675 sdhA succinate dehydr 31.6 61 0.0013 34.7 4.5 42 160-201 361-406 (570)
421 PRK08274 tricarballylate dehyd 31.6 52 0.0011 33.8 3.9 41 160-200 417-461 (466)
422 TIGR01812 sdhA_frdA_Gneg succi 31.4 54 0.0012 34.8 4.1 42 159-200 357-402 (566)
423 TIGR03467 HpnE squalene-associ 31.3 41 0.00088 33.5 2.9 34 161-197 385-418 (419)
424 PRK05249 soluble pyridine nucl 30.9 56 0.0012 33.5 4.0 34 159-197 300-333 (461)
425 PRK09231 fumarate reductase fl 30.9 58 0.0012 34.9 4.2 44 158-201 368-415 (582)
426 COG0348 NapH Polyferredoxin [E 30.9 17 0.00036 37.0 0.0 45 327-372 183-229 (386)
427 PF00757 Furin-like: Furin-lik 30.9 29 0.00063 30.5 1.6 53 314-373 64-129 (149)
428 PRK05945 sdhA succinate dehydr 30.6 66 0.0014 34.4 4.6 42 160-201 369-414 (575)
429 PRK12842 putative succinate de 30.6 62 0.0013 34.5 4.3 43 160-202 523-569 (574)
430 PRK12843 putative FAD-binding 30.1 61 0.0013 34.7 4.2 42 160-201 528-573 (578)
431 PRK12834 putative FAD-binding 30.1 57 0.0012 34.6 3.9 39 161-199 504-549 (549)
432 PRK06116 glutathione reductase 29.9 69 0.0015 32.8 4.4 34 159-197 293-326 (450)
433 PRK12775 putative trifunctiona 29.6 72 0.0016 36.7 4.8 39 159-202 718-756 (1006)
434 KOG1025 Epidermal growth facto 28.8 27 0.00058 39.1 1.1 33 327-368 295-328 (1177)
435 COG4656 RnfC Predicted NADH:ub 28.7 17 0.00037 38.2 -0.3 20 352-371 362-381 (529)
436 PRK08958 sdhA succinate dehydr 28.4 66 0.0014 34.6 4.1 42 160-201 379-424 (588)
437 PRK04176 ribulose-1,5-biphosph 28.4 72 0.0016 30.4 3.9 44 158-201 210-255 (257)
438 PRK08626 fumarate reductase fl 28.3 70 0.0015 34.9 4.3 41 161-201 386-430 (657)
439 TIGR03143 AhpF_homolog putativ 28.1 55 0.0012 34.8 3.4 38 160-201 272-309 (555)
440 COG0492 TrxB Thioredoxin reduc 28.0 56 0.0012 32.1 3.2 39 158-200 262-300 (305)
441 PRK09078 sdhA succinate dehydr 27.7 74 0.0016 34.2 4.3 42 160-201 384-429 (598)
442 TIGR02731 phytoene_desat phyto 27.7 65 0.0014 32.9 3.8 33 161-196 420-452 (453)
443 PRK06069 sdhA succinate dehydr 27.5 68 0.0015 34.2 4.0 40 161-200 371-414 (577)
444 PRK04965 NADH:flavorubredoxin 26.4 72 0.0016 31.8 3.7 37 160-197 264-300 (377)
445 TIGR01176 fum_red_Fp fumarate 26.1 85 0.0018 33.7 4.4 42 159-200 368-413 (580)
446 PRK14694 putative mercuric red 25.9 84 0.0018 32.4 4.2 34 159-197 300-333 (468)
447 TIGR01816 sdhA_forward succina 25.8 73 0.0016 34.0 3.8 42 160-201 352-397 (565)
448 PRK14727 putative mercuric red 25.0 80 0.0017 32.8 3.9 34 159-197 311-344 (479)
449 PRK12835 3-ketosteroid-delta-1 25.0 91 0.002 33.5 4.4 43 160-202 526-572 (584)
450 PLN02328 lysine-specific histo 24.9 61 0.0013 36.4 3.1 38 162-202 644-681 (808)
451 PRK15449 ferredoxin-like prote 24.5 39 0.00084 27.5 1.1 25 311-341 57-82 (95)
452 COG1152 CdhA CO dehydrogenase/ 24.4 32 0.00068 36.8 0.7 16 355-370 400-415 (772)
453 PRK07057 sdhA succinate dehydr 24.3 81 0.0018 33.9 3.9 41 160-200 382-426 (591)
454 PLN02507 glutathione reductase 24.3 89 0.0019 32.8 4.1 35 158-197 327-361 (499)
455 PRK07121 hypothetical protein; 24.3 82 0.0018 32.8 3.8 38 161-198 449-489 (492)
456 PRK15317 alkyl hydroperoxide r 24.3 44 0.00096 35.1 1.8 40 159-202 474-513 (517)
457 TIGR02512 Fe_only_hydrog hydro 24.2 27 0.00059 35.3 0.2 24 312-341 47-70 (374)
458 TIGR01350 lipoamide_DH dihydro 24.1 94 0.002 31.8 4.2 34 160-198 298-331 (461)
459 TIGR00292 thiazole biosynthesi 24.1 1.1E+02 0.0024 29.1 4.3 43 158-200 209-253 (254)
460 TIGR00275 flavoprotein, HI0933 24.0 92 0.002 31.5 4.0 27 6-32 134-160 (400)
461 COG4231 Indolepyruvate ferredo 24.0 35 0.00075 36.8 0.9 25 21-45 248-272 (640)
462 PRK06452 sdhA succinate dehydr 23.9 95 0.0021 33.2 4.3 41 161-201 360-404 (566)
463 PRK12839 hypothetical protein; 23.8 87 0.0019 33.5 4.0 39 160-198 524-566 (572)
464 PRK07818 dihydrolipoamide dehy 23.8 92 0.002 32.1 4.0 34 159-197 301-334 (466)
465 PF13738 Pyr_redox_3: Pyridine 23.7 79 0.0017 27.9 3.2 21 13-33 119-139 (203)
466 PRK08205 sdhA succinate dehydr 23.7 95 0.0021 33.2 4.2 42 160-201 374-419 (583)
467 PTZ00383 malate:quinone oxidor 23.5 69 0.0015 33.7 3.1 36 7-45 248-283 (497)
468 TIGR01421 gluta_reduc_1 glutat 23.2 1E+02 0.0022 31.7 4.2 33 160-197 294-326 (450)
469 TIGR00551 nadB L-aspartate oxi 22.9 95 0.002 32.4 4.0 43 158-200 343-389 (488)
470 COG1140 NarY Nitrate reductase 22.8 58 0.0013 33.1 2.2 42 307-361 206-247 (513)
471 PRK12844 3-ketosteroid-delta-1 22.5 1E+02 0.0023 32.8 4.2 42 160-201 506-551 (557)
472 TIGR02485 CobZ_N-term precorri 22.3 1.1E+02 0.0024 31.1 4.3 38 162-199 388-429 (432)
473 TIGR03140 AhpF alkyl hydropero 22.2 36 0.00079 35.8 0.7 37 160-200 476-512 (515)
474 TIGR02064 dsrA sulfite reducta 22.0 25 0.00053 36.1 -0.6 27 349-375 226-262 (402)
475 PRK06416 dihydrolipoamide dehy 21.9 1E+02 0.0022 31.6 3.9 35 159-198 299-333 (462)
476 TIGR00551 nadB L-aspartate oxi 21.8 92 0.002 32.4 3.6 30 5-34 158-191 (488)
477 PRK08401 L-aspartate oxidase; 21.7 97 0.0021 32.1 3.7 31 5-35 148-178 (466)
478 PRK13748 putative mercuric red 21.7 98 0.0021 32.7 3.8 34 159-197 393-426 (561)
479 PRK12810 gltD glutamate syntha 21.6 38 0.00083 35.1 0.7 19 353-371 42-62 (471)
480 PRK08641 sdhA succinate dehydr 21.6 1.2E+02 0.0025 32.7 4.4 42 159-200 366-410 (589)
481 PRK13030 2-oxoacid ferredoxin 21.6 53 0.0011 38.3 1.8 25 21-45 275-299 (1159)
482 PTZ00139 Succinate dehydrogena 21.2 1.1E+02 0.0023 33.2 4.0 41 160-200 401-445 (617)
483 PRK09077 L-aspartate oxidase; 21.0 1.1E+02 0.0024 32.4 4.0 42 159-200 364-409 (536)
484 PRK12814 putative NADPH-depend 20.6 52 0.0011 35.8 1.5 13 20-32 278-290 (652)
485 PRK07512 L-aspartate oxidase; 20.4 1.1E+02 0.0023 32.3 3.7 42 159-200 352-397 (513)
486 PRK06292 dihydrolipoamide dehy 20.4 1.1E+02 0.0025 31.2 3.9 35 159-198 296-330 (460)
487 PRK08071 L-aspartate oxidase; 20.4 1.1E+02 0.0024 32.2 3.8 42 159-200 343-388 (510)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2e-118 Score=867.95 Aligned_cols=386 Identities=64% Similarity=1.151 Sum_probs=375.5
Q ss_pred CCCCCCCeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcC
Q 016489 1 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 80 (388)
Q Consensus 1 ~g~~~dG~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G 80 (388)
+||+|||.|+.+|++||+|+||++|+|||++++|++|+++||+|| ..+++|+|++|+||+|+++++++++|.|.|++|
T Consensus 225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr--~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~G 302 (621)
T KOG2415|consen 225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR--ENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLG 302 (621)
T ss_pred ccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc--cCCCcceeccccceeEecChhhcCCcceeeecc
Confidence 699999999999999999999999999999999999999999999 589999999999999999999999999999999
Q ss_pred CCCCCCCcceeEEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccc
Q 016489 81 WPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 160 (388)
Q Consensus 81 ~p~~~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~ 160 (388)
||++.+++||+|+||+.|..|+||+|+.+||+||+++|+++||+||+||.|+..|+||++++|+||++.+||||++|+++
T Consensus 303 wPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~ 382 (621)
T KOG2415|consen 303 WPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLV 382 (621)
T ss_pred CcccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-C------chHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-D------SNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~------~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
+||.+|||++|||+|..+++|.|+||+|||+|||+|++++++ . ..+..|++.++++|+++||+.+||+|+.|+
T Consensus 383 FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~ 462 (621)
T KOG2415|consen 383 FPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFH 462 (621)
T ss_pred cCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccc
Confidence 999999999999999999999999999999999999999975 1 236799999999999999999999999997
Q ss_pred --hCChHHHHHHHHHHHHhcCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCCCCCcccceEeecccccCCCCCCeEe
Q 016489 234 --YGLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRL 311 (388)
Q Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~dg~ltfd~~~~v~~s~~~h~~d~~~Hl~v 311 (388)
+|.|+||+++++..++.+|+.||||+|.+.|++.|+|++.++||.||||||+||||.+|||++|||||++|||+||++
T Consensus 463 ~~lG~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l 542 (621)
T KOG2415|consen 463 GKLGLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTL 542 (621)
T ss_pred cccccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCC--ceeEEEecCCCccCCcccccCCCCCeeEECcCCCCCCcccCC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKN--QLKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGYSVM 388 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~--~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~gg~G~~y~~~ 388 (388)
+|++++.+.|++.|.+|+.|||||+|||++++|.+ .++++||+|||+||+||+|++|.|+|+|++||||+||.|..|
T Consensus 543 ~~~~ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 543 RDDDIPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred cCCCcchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 99999999999999999999999999999887644 359999999999999999999999999999999999999988
No 2
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=4.3e-39 Score=328.37 Aligned_cols=244 Identities=28% Similarity=0.431 Sum_probs=210.1
Q ss_pred CCeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCC--------CCCcEEE
Q 016489 6 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILH 77 (388)
Q Consensus 6 dG~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~--------~~g~v~~ 77 (388)
++++..+.+.+.+++|++||+|||++|.+++++ |+. +..++..+++++++++.++++.+ .+|.+++
T Consensus 138 ~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~l----g~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~ 211 (429)
T PRK10015 138 GNKVTGVQAGDDILEANVVILADGVNSMLGRSL----GMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWL 211 (429)
T ss_pred CCEEEEEEeCCeEEECCEEEEccCcchhhhccc----CCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEE
Confidence 455655566677899999999999999999864 776 35667789999999988765533 2477899
Q ss_pred EcCCCCCCCCcceeEEEEcCCCEEEEEEEEecC-CCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCC
Q 016489 78 TLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN-YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSI 156 (388)
Q Consensus 78 ~~G~p~~~~~~Gggwiy~~~~~~vsVGlv~~l~-~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~ 156 (388)
++|+|.. ...||||+|+.++ .+|||+++.++ +.+...++++++++|+.||.+++++++++.++|++++||+||++++
T Consensus 212 ~~g~~~~-g~~g~G~~~~~~d-~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~ 289 (429)
T PRK10015 212 FAGSPSD-GLMGGGFLYTNKD-SISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMV 289 (429)
T ss_pred ecCccCC-CCCCceEEEEcCC-cEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccC
Confidence 9999864 4788999999865 79999998874 4455678999999999999999999999999999999999999989
Q ss_pred CccccCCEEEEccCccccCC--CCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhhhHHHHHHHHhhhH
Q 016489 157 PYPVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRP 230 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp--~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s~~~~el~~~r~~~~ 230 (388)
|+++++|++||||||||+|| ++++||++||.||++|||+|.++++. ...|+.|+++|+++|+++||+..|+++.
T Consensus 290 ~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~ 369 (429)
T PRK10015 290 PQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPA 369 (429)
T ss_pred CccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHh
Confidence 99999999999999999995 69999999999999999999999974 4679999999999999999999999999
Q ss_pred HHh----hCChHHHHHHHHHHHHhc-CCCCcc
Q 016489 231 AFE----YGLLPGLAICGLEHYILR-GKSPYT 257 (388)
Q Consensus 231 ~~~----~~~~~~~~~~~~~~~~~~-~~~~~~ 257 (388)
+|. +..||.|++.++..++.. |.+..+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (429)
T PRK10015 370 LMENPRLFSQYPRMVADIMNDMFTIDGKPNQP 401 (429)
T ss_pred hhcCccHHHHHHHHHHHHHHHhcccCCccchH
Confidence 885 578999999999998876 344343
No 3
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=100.00 E-value=2.3e-41 Score=278.47 Aligned_cols=109 Identities=61% Similarity=1.059 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHHHhcCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCCCCCcccceEeecccccCCCCCCeEecCC
Q 016489 235 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 314 (388)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~dg~ltfd~~~~v~~s~~~h~~d~~~Hl~v~d~ 314 (388)
|.|+||+++++++++++|+.|||++|.++|+++|++++.++||+||||||+|||||+|||++|||+|+||||+||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 56899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPD 343 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~ 343 (388)
++|++.|+++|++||+|||||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999875
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=1.6e-36 Score=309.31 Aligned_cols=245 Identities=27% Similarity=0.438 Sum_probs=208.7
Q ss_pred CCCeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCC--------CCCcEE
Q 016489 5 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEIL 76 (388)
Q Consensus 5 ~dG~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~--------~~g~v~ 76 (388)
++|.++.+.++|.+++|++||+|+|++|.|+++ +|+++ ...+.+++++++++++++++.+ .+|.++
T Consensus 137 ~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~----lgl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~ 210 (428)
T PRK10157 137 RDGKVVGVEADGDVIEAKTVILADGVNSILAEK----LGMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAAC 210 (428)
T ss_pred eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHH----cCCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEE
Confidence 356666666778899999999999999998885 48873 4567788999999887764322 256788
Q ss_pred EEcCCCCCCCCcceeEEEEcCCCEEEEEEEEecCC-CCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcC
Q 016489 77 HTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQS 155 (388)
Q Consensus 77 ~~~G~p~~~~~~Gggwiy~~~~~~vsVGlv~~l~~-~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~ 155 (388)
++.|+|... .+||||+|+.. +.+|||+++.++. .+...+++++++.|++||.+++++++++.++|+++.+|++|+..
T Consensus 211 ~~~g~~~~g-~~ggG~~~~~~-~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~ 288 (428)
T PRK10157 211 LFAGSPTDG-LMGGGFLYTNE-NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINM 288 (428)
T ss_pred EEEECCCCC-CcCceeEEEcC-CeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCccc
Confidence 889988644 88999999975 4899999998864 34457899999999999999999999999999999999999988
Q ss_pred CCccccCCEEEEccCccccCC--CCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhhhHHHHHHHHhhh
Q 016489 156 IPYPVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYR 229 (388)
Q Consensus 156 ~p~~~~~g~lLvGDAAG~vdp--~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s~~~~el~~~r~~~ 229 (388)
+|+++++|+++|||||||+|| ++++||++||.||++|||+|.++++. ...|+.|+++|+++ +++||+..+++.
T Consensus 289 ~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~ 367 (428)
T PRK10157 289 LPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLP 367 (428)
T ss_pred CCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccH
Confidence 899999999999999999998 59999999999999999999999975 35799999999999 699999999999
Q ss_pred HHHh----hCChHHHHHHHHHHHHhc-CCCCccc
Q 016489 230 PAFE----YGLLPGLAICGLEHYILR-GKSPYTL 258 (388)
Q Consensus 230 ~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~ 258 (388)
.+++ +..||.|++.++..++.. |.+++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (428)
T PRK10157 368 AFLDNPRMFSGYPELAVGVARDLFTIDGSAPELM 401 (428)
T ss_pred HHhcCccHHHHHHHHHHHHHHHheeeCCcCchhH
Confidence 8874 588999999999988876 5555554
No 5
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=3.2e-36 Score=304.14 Aligned_cols=268 Identities=33% Similarity=0.462 Sum_probs=210.0
Q ss_pred CCCeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCC
Q 016489 5 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 84 (388)
Q Consensus 5 ~dG~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~ 84 (388)
.+|.++.+...+++++||+||+|||++|.+++++ |+. ...++.++++++|++.++ .++...+++.++.+
T Consensus 125 ~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~ 193 (396)
T COG0644 125 DDGVVVGVRAGDDEVRAKVVIDADGVNSALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLD 193 (396)
T ss_pred CCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCc
Confidence 4566776667778999999999999999999975 765 356778999999999887 34556777666655
Q ss_pred CCCcceeEEEEcCCCEEEEEEEEecCCCCCCCChH-HHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCC
Q 016489 85 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 163 (388)
Q Consensus 85 ~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~-~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g 163 (388)
....||+|+||++++.++||+++.++. +..++. +++++|++||.+++.+.+++.+++.++.||++++.+.| ++++|
T Consensus 194 ~~~~Gy~wifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~ 270 (396)
T COG0644 194 VGPGGYGWIFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDG 270 (396)
T ss_pred cCCCceEEEEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCC
Confidence 557899999999999999999999876 444444 99999999999999988899999999999999999877 99999
Q ss_pred EEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhhhHHHHHHHHhhhHHHhhCChHHHHH
Q 016489 164 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAI 242 (388)
Q Consensus 164 ~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~~~~~~~~~~ 242 (388)
++|||||||++||++++||++||.||++|||+|.++++. ++.|+.|++.|++++..++++..++.+..+. .....+.
T Consensus 271 ~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 348 (396)
T COG0644 271 VLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLP 348 (396)
T ss_pred EEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh--HhhhhHH
Confidence 999999999999999999999999999999999999876 4678999999999987776776666665543 2233333
Q ss_pred HHHHHHHhcCCCCccccCCCCCcccchhhhcCCCCCCCCCCCCCC-CCcccceEeeccc
Q 016489 243 CGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLS-FDVPTSLHRSNTN 300 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~dg~lt-fd~~~~v~~s~~~ 300 (388)
.....+.. .|...+........+.++.+.+.++ ++++.++.++.+.
T Consensus 349 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (396)
T COG0644 349 ALIKLLAD------------KDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLTA 395 (396)
T ss_pred HHHHHHhc------------cccccccchhhhhhhHHHhhhccccHHHHHHHHHHHHhc
Confidence 33333221 1111222233456677777776555 7777777665543
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.93 E-value=1.6e-24 Score=222.44 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=149.2
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCC--CCCCcEEEEcCCCCCCCCcceeEEE
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLY 94 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~--~~~g~v~~~~G~p~~~~~~Gggwiy 94 (388)
.+++||+||+|||++|.+++++ |+. ...+.+++++.+.++++. +.++.+..++|.... ..||+|+|
T Consensus 184 ~~v~a~~VIgADG~~S~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~~Y~Wif 251 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVS--PDFYGWVF 251 (450)
T ss_pred cEEEeCEEEEcCCcchHHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCCC--CCceEEEE
Confidence 4799999999999999999965 664 135778888777776533 334556666665432 23689999
Q ss_pred EcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCcccc
Q 016489 95 HMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFL 174 (388)
Q Consensus 95 ~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~v 174 (388)
|.++ .++||+++... ..++.++++.+... +...+.++++++..++.||.+ + .++.+.+|++|||||||++
T Consensus 252 P~g~-~~~VG~g~~~~----~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~ip~~-~--~~~~~~~~vlLvGDAAg~v 321 (450)
T PLN00093 252 PKCD-HVAVGTGTVVN----KPAIKKYQRATRNR--AKDKIAGGKIIRVEAHPIPEH-P--RPRRVRGRVALVGDAAGYV 321 (450)
T ss_pred ECCC-cEEEEEEEccC----CCChHHHHHHHHHH--hhhhcCCCeEEEEEEEEcccc-c--ccceeCCCcEEEeccccCC
Confidence 9985 78999976432 12344555555422 234466788888888889984 2 4577899999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 175 NVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 175 dp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
||++|+||++||+||++|||+|.++++. ...|+.|+++|++.| +++++....++.+|.
T Consensus 322 ~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~-g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 322 TKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKY-WPTYKVLDILQKVFY 385 (450)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999854 246899999999986 999999999999884
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.93 E-value=2.9e-24 Score=217.28 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=144.0
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCC--CCCcEEEEcCCCCCCCCcceeEEE
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--NPGEILHTLGWPLDQKTYGGSFLY 94 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~--~~g~v~~~~G~p~~~~~~Gggwiy 94 (388)
.+++||+||+|||++|.+++++ |+.+ ..+.+++++.++++..+. .+..+..++|.... ..||+|+|
T Consensus 145 ~~i~a~~VIgADG~~S~v~~~~----g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~gY~Wif 212 (398)
T TIGR02028 145 CTLEVDAVIGADGANSRVAKEI----DAGD------YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVS--PDFYGWVF 212 (398)
T ss_pred cEEEeCEEEECCCcchHHHHHh----CCCC------cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCC--CCceEEEE
Confidence 4799999999999999999965 6651 245667776666665432 34455556664332 23589999
Q ss_pred EcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCcccc
Q 016489 95 HMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFL 174 (388)
Q Consensus 95 ~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~v 174 (388)
|.++ .++||++.... ..... .|+++..+. ....+.+++.++..++.+|.+. .++.+.+|+||||||||++
T Consensus 213 P~~~-~~~VG~g~~~~----~~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~llvGDAAg~v 282 (398)
T TIGR02028 213 PKCD-HVAVGTGTVAA----KPEIK-RLQSGIRAR-AAGKVAGGRIIRVEAHPIPEHP---RPRRVVGRVALVGDAAGYV 282 (398)
T ss_pred ECCC-eEEEEEEeCCC----CccHH-HHHHhhhhh-hhhccCCCcEEEEEEEeccccc---cccEECCCEEEEEcCCCCC
Confidence 9985 68899975321 11222 333332221 2234556777887888898853 4578899999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 175 NVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 175 dp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
||++|+||++||.||.+||+++.++++. ...|+.|+++|++.| +++++....++.+|.
T Consensus 283 ~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~-~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 283 TKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEY-RPTYRVLDLLQRVFY 346 (398)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999864 255999999999985 999999999999875
No 8
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.90 E-value=4.6e-22 Score=200.25 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=142.6
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCC--CCCCcEEEEcCCCCCCCCcceeEEE
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLY 94 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~--~~~g~v~~~~G~p~~~~~~Gggwiy 94 (388)
.+++|++||+|||++|.+++++ |+.. +..+.+++++.+.++... .+++.+..+++.+... .+|+|+|
T Consensus 140 ~~i~a~~VI~AdG~~S~v~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~y~wv~ 208 (388)
T TIGR02023 140 GSVEADVVIGADGANSPVAKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSP--DFYGWVF 208 (388)
T ss_pred eEEEeCEEEECCCCCcHHHHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCC--CceEEEe
Confidence 4799999999999999999864 6651 234667777766555432 3345555555544322 3689999
Q ss_pred EcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCcccc
Q 016489 95 HMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFL 174 (388)
Q Consensus 95 ~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~v 174 (388)
|.++ .++||+++... ..++.++++.++.... ++.++.+...++.+|.+ ..++.+.++++|||||||++
T Consensus 209 P~~~-~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~lvGDAAg~v 276 (388)
T TIGR02023 209 PKGD-HIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAMLVGDAAGLV 276 (388)
T ss_pred eCCC-eeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEEEeccccCc
Confidence 9975 79999976422 2345666777764422 34556666666677763 24577889999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 175 NVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 175 dp~~~~Gi~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
+|++++||++||.||++||++|.+++.. ...|+.|+++|++.| ++++...+.++.++
T Consensus 277 ~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~-~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 277 TPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLY-GTTFRVLRVLQMVY 335 (388)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999965 356999999999986 88897776666655
No 9
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.89 E-value=2.9e-24 Score=170.67 Aligned_cols=82 Identities=29% Similarity=0.635 Sum_probs=74.1
Q ss_pred cccccCCCCCCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeEEC
Q 016489 298 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTV 376 (388)
Q Consensus 298 ~~~h~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~-~~I~w~~ 376 (388)
+..+.+.+.+||+|+|++.|..|+ ..+|+.+|||++|++.++ | ++.|++++|+|||||++.||. +.|+|++
T Consensus 16 n~~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~--g--~l~~~yegClECGTCRvlc~~~~~i~W~Y 87 (99)
T COG2440 16 NRYNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDD--G--KLRFDYEGCLECGTCRVLCPHSGLIQWRY 87 (99)
T ss_pred heeeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCC--C--cEEEeecCeeeccceeEecCCCcceEEec
Confidence 336667778999999999999987 579999999999999874 3 899999999999999999999 8999999
Q ss_pred cCCCCCCcccC
Q 016489 377 PEGGGGPGYSV 387 (388)
Q Consensus 377 p~gg~G~~y~~ 387 (388)
|+||+||.||-
T Consensus 88 Prgg~GI~yrf 98 (99)
T COG2440 88 PRGGFGITYRY 98 (99)
T ss_pred CCCCcCEEEec
Confidence 99999999984
No 10
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.81 E-value=7.7e-21 Score=152.98 Aligned_cols=80 Identities=20% Similarity=0.444 Sum_probs=66.4
Q ss_pred cccccCCCCCCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCC-eeEEC
Q 016489 298 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN-IKWTV 376 (388)
Q Consensus 298 ~~~h~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~-I~w~~ 376 (388)
++++.+++.+||+|++.. .+|. .++|+.+||++||+.+++ | .+.||+++|++||+|+++||..+ |+|++
T Consensus 14 ~~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e~--G--~V~vd~e~CigCg~C~~~C~~~~~~~W~y 83 (95)
T PRK15449 14 NKFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQDD--G--SVRFDYAGCLECGTCRILGLGSALEQWEY 83 (95)
T ss_pred ceeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCCC--C--CEEEcCCCCCcchhhhhhcCCCCccCccC
Confidence 344446778999997754 3344 489999999999987543 5 79999999999999999999886 69999
Q ss_pred cCCCCCCcccC
Q 016489 377 PEGGGGPGYSV 387 (388)
Q Consensus 377 p~gg~G~~y~~ 387 (388)
|+||+||.||.
T Consensus 84 Prgg~GV~yr~ 94 (95)
T PRK15449 84 PRGTFGVEFRY 94 (95)
T ss_pred CCCCcCEEEec
Confidence 99999999984
No 11
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.76 E-value=3.5e-17 Score=156.53 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=119.1
Q ss_pred cCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEE
Q 016489 15 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLY 94 (388)
Q Consensus 15 ~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy 94 (388)
.+.+++|++||+|+|.+|.+.++ +++.. .+.++..+++..+..+.....+....++++.... ..++.|++
T Consensus 131 ~~~~~~a~~vv~a~G~~s~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 200 (295)
T TIGR02032 131 GEGTVTAKIVIGADGSRSIVAKK----LGLRK----EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS--PGGYGWVF 200 (295)
T ss_pred ccEEEEeCEEEECCCcchHHHHh----cCCCC----CCcceeeEEEEEEecCCcccCcceEEEEcCCCcC--CCceEEEE
Confidence 45689999999999999988875 47762 2345566666555555433334444555554322 24778999
Q ss_pred EcCCCEEEEEEEEecCCCCCCCChHHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCccc
Q 016489 95 HMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGF 173 (388)
Q Consensus 95 ~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~ 173 (388)
|..+++++||++...+. +..++.+.++.+. .+|. +.+.+.++.....+|... ..++.+.+|++|+||||++
T Consensus 201 P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~~ 272 (295)
T TIGR02032 201 PKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAGH 272 (295)
T ss_pred eCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccCC
Confidence 99888999999876542 3456788888886 4454 455556654455566643 2457889999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHH
Q 016489 174 LNVPKIKGTHTAMKSGMLAAEAG 196 (388)
Q Consensus 174 vdp~~~~Gi~~Am~SG~lAAeai 196 (388)
+||++++|++.||.||.+|||+|
T Consensus 273 ~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 273 VKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCccCCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999974
No 12
>PLN02697 lycopene epsilon cyclase
Probab=99.65 E-value=2.8e-14 Score=149.11 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=126.4
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCC---------
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP--------- 82 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p--------- 82 (388)
..++|.+++|++||+|+|++|. +.+ +........+.+.+.|+. +++....++++.. .+++|-
T Consensus 228 ~~~dG~~i~A~lVI~AdG~~S~--rl~----~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~~-vlMD~r~~~~~~~~~ 298 (529)
T PLN02697 228 ACEDGRVIPCRLATVASGAASG--RLL----QYEVGGPRVCVQTAYGVE--VEVENNPYDPSLM-VFMDYRDYFKEKVSH 298 (529)
T ss_pred EEcCCcEEECCEEEECCCcChh--hhh----ccccCCCCcccEEEEEEE--EEecCCCCCcchh-eeecccccccccccc
Confidence 3567889999999999999982 211 221000111234556643 3444333444432 222221
Q ss_pred CCCCCcceeEEEEcCCCEEEE-EEEEecCCCCCCCC---hHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCc
Q 016489 83 LDQKTYGGSFLYHMNDRQIAL-GLVVALNYHNPFLN---PYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 158 (388)
Q Consensus 83 ~~~~~~Gggwiy~~~~~~vsV-Glv~~l~~~~~~~~---~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~ 158 (388)
...+.+++.|+.|++++++.| +..... .+.++ ..+.++++..+..+ ...+.++.....||.+|. +|+
T Consensus 299 ~~~~~p~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~~L~~~l~~~Gi----~~~~i~~~E~g~iPm~g~--~~~ 369 (529)
T PLN02697 299 LEAEYPTFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKKRLMSRLETMGI----RILKTYEEEWSYIPVGGS--LPN 369 (529)
T ss_pred ccCCCceEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHHHHHHHHHhCCC----CcceEEEEEeeeecCCCC--Ccc
Confidence 111235566777888999999 875322 12222 33344444433222 345666767778999873 455
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccC-------------chHHHHHHHHHHhhhHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKSWVWQELQRA 225 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~-------------~~l~~Y~~~~~~s~~~~el~~~ 225 (388)
. .+++++||||||+++|.||-||..+|.+|..||++|.++++.. ..++.|+++|.+++ +++++..
T Consensus 370 ~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~-~r~~~~~ 447 (529)
T PLN02697 370 T-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQER-KRQRAFF 447 (529)
T ss_pred c-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHH-HHHHHHH
Confidence 4 7899999999999999999999999999999999999999642 23678888887764 6655555
Q ss_pred HhhhHH
Q 016489 226 RNYRPA 231 (388)
Q Consensus 226 r~~~~~ 231 (388)
...+.+
T Consensus 448 ~~g~~~ 453 (529)
T PLN02697 448 LFGLAL 453 (529)
T ss_pred HHHHHH
Confidence 444433
No 13
>PRK11445 putative oxidoreductase; Provisional
Probab=99.63 E-value=2e-14 Score=143.09 Aligned_cols=201 Identities=19% Similarity=0.184 Sum_probs=112.3
Q ss_pred ecCe--EEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 14 QRGV--ELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 14 ~~g~--~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
++|. +++|++||+|||++|.+++++ +.. ...+ .+ .++.+.+. .... .+.... .++. ....|+.
T Consensus 137 ~~g~~~~i~a~~vV~AdG~~S~vr~~l----~~~---~~~~-~~-~~~~~~~~-~~~~-~~~~~~-~f~~---~~~~~~~ 201 (351)
T PRK11445 137 ADGWEQHITARYLVGADGANSMVRRHL----YPD---HQIR-KY-VAIQQWFA-EKHP-VPFYSC-IFDN---EITDCYS 201 (351)
T ss_pred cCCcEEEEEeCEEEECCCCCcHHhHHh----cCC---Cchh-hE-EEEEEEec-CCCC-CCCcce-EEec---cCCCceE
Confidence 4553 699999999999999999865 433 1112 22 34444322 2211 122211 1221 1135778
Q ss_pred EEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCccc-ccCCCeeeeecceeeccCC-CcCCCccccCCEEEEcc
Q 016489 92 FLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGG-LQSIPYPVFPGGAIIGC 169 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~-~l~~~~~~~yga~~ip~gg-~~~~p~~~~~g~lLvGD 169 (388)
|++|.++ .+++|.+... .++.+.++.+++. +.+ .+..++.+......++... +. ......+|++||||
T Consensus 202 W~~p~~~-~~~~g~~~~~------~~~~~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvlVGD 271 (351)
T PRK11445 202 WSISKDG-YFIFGGAYPM------KDGRERFETLKEK--LSAFGFQFGKPVKTEACTVLRPSRWQ-DFVCGKDNAFLIGE 271 (351)
T ss_pred EEeCCCC-cEEecccccc------cchHHHHHHHHHH--HHhcccccccccccccccccCccccc-ccccCCCCEEEEEc
Confidence 8888754 6677643211 1223333322210 000 0111222211111111111 11 11234689999999
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHhhhHHHhhCChHHHHHHHHHHHH
Q 016489 170 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYI 249 (388)
Q Consensus 170 AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~~~ 249 (388)
|||+++|++++||++||+||.+||+++.++. +..++.|++.++.- . ++.. -+.+ ..|-|-+..+..++
T Consensus 272 AAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--~~~~~~y~~~~~~~--~--~~~~---~~~~---~~~~~~~~~~~~~~ 339 (351)
T PRK11445 272 AAGFISPSSLEGISYALDSARILSEVLNKQP--EKLNTAYWRKTRKL--R--LKLF---GKIL---KSPFMYNPALRKLI 339 (351)
T ss_pred ccCccCCccCccHHHHHHhHHHHHHHHHhcc--cchHHHHHHHHHHH--H--HHHH---HHHh---cChhhhhHHHHHHH
Confidence 9999999999999999999999999998765 45689999999872 2 2221 1222 24667777777766
Q ss_pred hc
Q 016489 250 LR 251 (388)
Q Consensus 250 ~~ 251 (388)
.+
T Consensus 340 ~~ 341 (351)
T PRK11445 340 MR 341 (351)
T ss_pred HH
Confidence 44
No 14
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.60 E-value=2.1e-13 Score=136.82 Aligned_cols=213 Identities=15% Similarity=0.087 Sum_probs=124.1
Q ss_pred eecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCC-------
Q 016489 13 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ------- 85 (388)
Q Consensus 13 ~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~------- 85 (388)
+.+|.+++|++||+|+|.+|.+.+. +.+.. ..-+...|+. ++++...++++..+ ++.+....
T Consensus 122 ~~~g~~~~a~~VI~A~G~~s~~~~~---~~~~~-----~~~q~~~G~~--~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~ 190 (388)
T TIGR01790 122 CAGGQRIQARLVIDARGFGPLVQYV---RFPLN-----VGFQVAYGVE--ARLSRPPHGPSSMV-IMDARVDQLAAPELK 190 (388)
T ss_pred eCCCCEEEeCEEEECCCCchhcccc---cCCCC-----ceEEEEEEEE--EEEcCCCCCCCceE-EEecccccccccccc
Confidence 3456689999999999999855331 11221 1123455542 34443333333322 11221111
Q ss_pred -CCcceeEEEEcCCCEEEEEEEEecCCCCCCCChHH---HHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCcccc
Q 016489 86 -KTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYE---EFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 161 (388)
Q Consensus 86 -~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~---~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~ 161 (388)
..+++.|++|.+++++.|+...... .+..+..+ .++++..... +...+.++.....+|.++.. +. +.
T Consensus 191 ~~~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~g----~~~~~i~~~~~~~iP~~~~~--~~-~~ 261 (388)
T TIGR01790 191 GYRPTFLYAMPLGSTRVFIEETSLAD--RPALPRDRLRQRILARLNAQG----WQIKTIEEEEWGALPVGLPG--PF-LP 261 (388)
T ss_pred CCCCceEEEeecCCCeEEEEeccccC--CCCCCHHHHHHHHHHHHHHcC----CeeeEEEeeeeEEEecccCC--Cc-cC
Confidence 0122678889988888887543221 12233332 3333321111 22234444455677886643 23 78
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHhhhHHHHHHHHhhhHHHhhCChHH
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPG 239 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~~~~~~~ 239 (388)
+++++||||||+++|+||+||++||.++..+|+++.+++.. +..++.|++.++..+ .+++......+.++ ...-+.
T Consensus 262 ~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~ 339 (388)
T TIGR01790 262 QRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTER-RRQRYFRLLGRMLF-LALEPE 339 (388)
T ss_pred CCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHH-HHHHHHHHHHHHHH-HcCCHH
Confidence 99999999999999999999999999999999999999864 456788887777654 45444433333332 222234
Q ss_pred HHHHHHHH
Q 016489 240 LAICGLEH 247 (388)
Q Consensus 240 ~~~~~~~~ 247 (388)
-....+..
T Consensus 340 ~~~~~f~~ 347 (388)
T TIGR01790 340 ERRRFFQR 347 (388)
T ss_pred HHHHHHHH
Confidence 44444443
No 15
>PLN02463 lycopene beta cyclase
Probab=99.56 E-value=2.5e-13 Score=139.59 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=106.2
Q ss_pred eecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEE-------EEcCCC---
Q 016489 13 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEIL-------HTLGWP--- 82 (388)
Q Consensus 13 ~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~-------~~~G~p--- 82 (388)
+++|.+++|++||+|+|.+|.+.+. .-. .....+.+.|+. .++....++++..+ |.-+.|
T Consensus 150 ~~dG~~i~A~lVI~AdG~~s~l~~~-----~~~---~~~g~Q~a~Gi~--~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~ 219 (447)
T PLN02463 150 CDDGVKIQASLVLDATGFSRCLVQY-----DKP---FNPGYQVAYGIL--AEVDSHPFDLDKMLFMDWRDSHLGNNPELR 219 (447)
T ss_pred ECCCCEEEcCEEEECcCCCcCccCC-----CCC---CCccceeeeeEE--eecCCCCcccccchhhhcChhhccccchhh
Confidence 5677789999999999999987541 111 111223345542 23322222222211 111101
Q ss_pred -CCCCCcceeEEEEcCCCEEEEEEEEecCCCCCCCCh---HHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCc
Q 016489 83 -LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNP---YEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 158 (388)
Q Consensus 83 -~~~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~---~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~ 158 (388)
.+...+++.|++|++++++.|+...... ++..+. .+.+.++..+..+ +..++.+.....||.|+.. |
T Consensus 220 ~~~~~~p~FlY~~P~~~~~~~vEeT~l~s--~~~~~~~~lk~~L~~~l~~~Gi----~~~~i~~~E~~~IPmg~~~--~- 290 (447)
T PLN02463 220 ARNSKLPTFLYAMPFSSNRIFLEETSLVA--RPGLPMDDIQERMVARLRHLGI----KVKSVEEDEKCVIPMGGPL--P- 290 (447)
T ss_pred hccCCCCceEEEEecCCCeEEEEeeeeec--CCCCCHHHHHHHHHHHHHHCCC----CcceeeeeeeeEeeCCCCC--C-
Confidence 0111256779999999999988753322 222222 2333333322222 2345555566679998753 3
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
...+++++||||||+++|.||.||.+||.+|.+||++|.++++.
T Consensus 291 ~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 291 VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 34679999999999999999999999999999999999999975
No 16
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.55 E-value=5.8e-14 Score=144.59 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=105.1
Q ss_pred CCCCeeeeee-ecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCC-CCCCCcEEEEcCC
Q 016489 4 AKDGSKKENF-QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG-KHNPGEILHTLGW 81 (388)
Q Consensus 4 ~~dG~~~~~~-~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~-~~~~g~v~~~~G~ 81 (388)
+.+|.++.+. ++|.+|+||++|||+|.+|.|+++.+ +.+.+.....-+...++.+. ++.. ...+....+.+
T Consensus 182 ~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L-~~~~~~~~~~L~~d~av~~~----~~~~~~~~~~T~~~a~-- 254 (454)
T PF04820_consen 182 DEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKAL-KVGFRDWSDWLPNDRAVAVQ----VPNEDPPEPYTRSTAF-- 254 (454)
T ss_dssp -TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT--EEEEEETTTCEEEEEEEEE----EE-SSCTTSSEEEEEE--
T ss_pred cCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhh-cCCCccccccccccEEEEEe----cCcCCCCCCceeEEec--
Confidence 4578777764 57888999999999999999999631 11222000011111234332 2222 22333333332
Q ss_pred CCCCCCcceeEEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCcccc
Q 016489 82 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 161 (388)
Q Consensus 82 p~~~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~ 161 (388)
..|+.|.+|+.++..+ |+|...++. ++.+.++.++++-........ ..+.. .. |. ..+..+
T Consensus 255 -----~~GW~W~IPL~~~~~~-G~V~s~~~~----s~~~A~~~l~~~l~~~~~~~~-~~i~~-----~~-g~--~~~~~~ 315 (454)
T PF04820_consen 255 -----EAGWIWYIPLQNRRGS-GYVYSSDFI----SDDEAEAELLAYLGGSPEAEP-RHIRF-----RS-GR--RKQFWG 315 (454)
T ss_dssp -----SSEEEEEEEESSEEEE-EEEEETTTS----HHHHHHHHHHHHHTCHCTTSC-EEEE------S--EE--ESSSEE
T ss_pred -----CCceEEEccCCCcceE-EEEeccccC----CHHHHHHHHHHhcchhhhcch-hhhcc-----cc-cc--hhhccc
Confidence 2466677788775555 999876554 445555555432111111111 22221 11 11 348899
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhh
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSW 217 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s~ 217 (388)
+|+++|||||||+||+++.||++||. |++++.++|.. ...++.|++.+++.|
T Consensus 316 ~n~vavGdAAgFiDPL~StGI~la~~----aa~~l~~~l~~~~~~~~~~~~Yn~~~~~~~ 371 (454)
T PF04820_consen 316 KNCVAVGDAAGFIDPLESTGIHLALS----AAEALAEALPDDDFSPAALDRYNRRMRREY 371 (454)
T ss_dssp TTEEE-CCCTEE--GGGSHHHHHHHH----HHHHHHHTHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcchhhccCccccccHHHHHH----HHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 66666666654 345788988887764
No 17
>PRK09126 hypothetical protein; Provisional
Probab=99.44 E-value=2e-12 Score=129.88 Aligned_cols=206 Identities=14% Similarity=0.063 Sum_probs=120.2
Q ss_pred eeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCC
Q 016489 8 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 87 (388)
Q Consensus 8 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~ 87 (388)
.+.-.+++|.+++||+||+|||.+|.+.+++ |+........+.+.++ .+..+.. ......++++.
T Consensus 143 ~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~----g~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~------ 207 (392)
T PRK09126 143 GAQVTLANGRRLTARLLVAADSRFSATRRQL----GIGADMHDFGRTMLVC---RMRHELP--HHHTAWEWFGY------ 207 (392)
T ss_pred eEEEEEcCCCEEEeCEEEEeCCCCchhhHhc----CCCccccccCCeEEEE---EEeccCC--CCCEEEEEecC------
Confidence 3333467788999999999999999998864 6652001111112211 1121111 12334444432
Q ss_pred cceeEEEEcCCCEEEEEEEEecCC-CC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEE
Q 016489 88 YGGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 165 (388)
Q Consensus 88 ~Gggwiy~~~~~~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~l 165 (388)
.+..|+||..++.+++++.+..+. .. ...++.++.+.+... +...+...+... .....|.... ..++.+.++++
T Consensus 208 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~rv~ 283 (392)
T PRK09126 208 GQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTAR--FKGRLGAMRLVS-SRHAYPLVAV-YAHRFVAKRFA 283 (392)
T ss_pred CCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcC-CCcEeechHH-HHHHHhhcceE
Confidence 134688999888888888654321 00 112333333322210 111111111111 0111122111 13577889999
Q ss_pred EEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 166 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 166 LvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|+||||.+++|++++|+..||.+|..+|+++.++++. +..|+.|++..+... .+=++..+.+..+|.
T Consensus 284 LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 284 LIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLAT-RPLYHATNAIAALYT 356 (392)
T ss_pred EEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999888742 246899999888753 444555565666654
No 18
>PRK07045 putative monooxygenase; Reviewed
Probab=99.41 E-value=2.1e-11 Score=122.58 Aligned_cols=211 Identities=9% Similarity=0.097 Sum_probs=119.0
Q ss_pred CCCeeee-eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCC
Q 016489 5 KDGSKKE-NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 83 (388)
Q Consensus 5 ~dG~~~~-~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~ 83 (388)
.||.++. .+++|.++++++||+|||.+|.+.+++ +++.............+. +..++.. +.....+++.
T Consensus 137 ~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~-- 206 (388)
T PRK07045 137 ADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDV---LRMPAERVPYATPMAFGT---IALTDSV--RECNRLYVDS-- 206 (388)
T ss_pred CCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHh---hCCCcccCCCCcceeEEE---EeccCCc--cccceEEEcC--
Confidence 3454333 356788999999999999999998864 344310011112233332 1222211 1222223332
Q ss_pred CCCCcceeEEEEcCCCEEEEEEEEecCCCCCC---CChHHHHHHHHcC--CCcccccCCCe-eeeecceeeccCCCcCCC
Q 016489 84 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPF---LNPYEEFQKFKHH--PAIKPLLEGGT-VVQYGARTLNEGGLQSIP 157 (388)
Q Consensus 84 ~~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~---~~~~~~~~~~k~~--P~i~~~l~~~~-~~~yga~~ip~gg~~~~p 157 (388)
..|..|+||..++.+++.+....+..... .+..++.+.+... +.+.+.++.-. ...+. ..|.... .++
T Consensus 207 ---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~ 280 (388)
T PRK07045 207 ---NQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLGRM-NLD 280 (388)
T ss_pred ---CCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecCcc-ccc
Confidence 12456889988778888776544321111 1223333333322 22222221100 01111 1222222 245
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
+.+.++++||||||..++|+.++|+..||.++..+|+++.+++.. ...|+.|++..+.. ...=.+..+.+...|
T Consensus 281 ~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~ 358 (388)
T PRK07045 281 RYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTY 358 (388)
T ss_pred cccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhc
Confidence 777899999999999999999999999999999999999877643 35688898777653 222233344444444
No 19
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.38 E-value=3e-12 Score=125.06 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=99.4
Q ss_pred EEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEE-ecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEc
Q 016489 18 ELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHM 96 (388)
Q Consensus 18 ~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~-~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~ 96 (388)
+++||+||+|||++|.+.+++ +... ......+..+...+. +.+......+ ..+++.+ ..++.|++|.
T Consensus 158 ~i~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~p~ 225 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFIYSP----PSGGFAIIPL 225 (356)
T ss_dssp EEEESEEEE-SGTT-HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEEEEE----TTEEEEEEEE
T ss_pred EEEEeeeecccCcccchhhhc----cccc--cCcccccccccccccccccccccccc--ccccccc----cccceeEeec
Confidence 799999999999999999865 5441 111111223322221 1111111122 2222221 2333478898
Q ss_pred CC-CEEEEEEEEecCCCCCC----CChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCc
Q 016489 97 ND-RQIALGLVVALNYHNPF----LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA 171 (388)
Q Consensus 97 ~~-~~vsVGlv~~l~~~~~~----~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAA 171 (388)
.+ +..++-+....+..... ..+.+.++.+...... ..... +...... .+..... .++...++++||||||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~-~~~~~~grv~LiGDAA 300 (356)
T PF01494_consen 226 ENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGP-DLLET-EIDEISA--WPIPQRV-ADRWVKGRVLLIGDAA 300 (356)
T ss_dssp TTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHT-CHHHH-EEEEEEE--EEEEEEE-ESSSEETTEEE-GGGT
T ss_pred cCCccceEEEeeeccccccccccccccccccccccccccc-ccccc-ccccccc--ccccccc-ccccccceeEEeccce
Confidence 65 45554454444432211 1234444444322110 11111 2222111 1221111 3466788999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHh
Q 016489 172 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 216 (388)
Q Consensus 172 G~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s 216 (388)
..++|+.|+|+..||.++..+|+.+.+.+++ .+.|+.|++..+..
T Consensus 301 h~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 301 HAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPR 348 (356)
T ss_dssp EEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred eeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988874 35688998877764
No 20
>PRK06753 hypothetical protein; Provisional
Probab=99.37 E-value=3.9e-11 Score=119.73 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=123.5
Q ss_pred CeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCC-CCCcEEEEcCCCCCC
Q 016489 7 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH-NPGEILHTLGWPLDQ 85 (388)
Q Consensus 7 G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~-~~g~v~~~~G~p~~~ 85 (388)
+.+.-.+++|.++++++||+|||.+|.+.+++ +... ......+ ..+... ++.... .+....++++
T Consensus 127 ~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~----~~~~--~~~~~g~-~~~~~~--~~~~~~~~~~~~~~~~~----- 192 (373)
T PRK06753 127 DKVTIHFADGESEAFDLCIGADGIHSKVRQSV----NADS--KVRYQGY-TCFRGL--IDDIDLKLPDCAKEYWG----- 192 (373)
T ss_pred CcEEEEECCCCEEecCEEEECCCcchHHHHHh----CCCC--CceEcce-EEEEEE--eccccccCccceEEEEc-----
Confidence 34444577888999999999999999998865 3321 1111011 111211 121111 1122334433
Q ss_pred CCcceeEEEEcCCCEEEEEEEEecCCCCC---CCChHHHHHHHHc-CCCcccccCCCeeeeecceeeccCCCcCCCcccc
Q 016489 86 KTYGGSFLYHMNDRQIALGLVVALNYHNP---FLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 161 (388)
Q Consensus 86 ~~~Gggwiy~~~~~~vsVGlv~~l~~~~~---~~~~~~~~~~~k~-~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~ 161 (388)
..|..|++|..++.+...+.+..+...+ ..+..++.+.|+. +|.++++++..... .....+......+++.+.
T Consensus 193 -~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 269 (373)
T PRK06753 193 -TKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSET--GILHHDIYDLKPLKSFVY 269 (373)
T ss_pred -CCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcc--cceeeccccccccccccC
Confidence 1356788999888877776554321111 1222333333332 24445444322110 000011111122346678
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
++++||||||..+.|+.++|+..||.++..+++.+... .....|+.|++.++.. ..+.++.++.+..+++
T Consensus 270 ~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 270 GRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQ 339 (373)
T ss_pred CCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHh
Confidence 99999999999999999999999999999999887421 1246789999999886 4777888888877765
No 21
>PRK06185 hypothetical protein; Provisional
Probab=99.37 E-value=3.3e-11 Score=121.76 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=111.9
Q ss_pred cC-eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEE
Q 016489 15 RG-VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 93 (388)
Q Consensus 15 ~g-~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwi 93 (388)
+| .+++|++||+|||.+|.+.++ +|+.. .........+. ..++.....++..+..+. ..|..++
T Consensus 151 ~g~~~i~a~~vI~AdG~~S~vr~~----~gi~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~g~~~l 215 (407)
T PRK06185 151 DGPGEIRADLVVGADGRHSRVRAL----AGLEV-REFGAPMDVLW----FRLPREPDDPESLMGRFG------PGQGLIM 215 (407)
T ss_pred CCcEEEEeCEEEECCCCchHHHHH----cCCCc-cccCCCceeEE----EecCCCCCCCcccceEec------CCcEEEE
Confidence 45 479999999999999998775 47652 11111112211 123322111222222221 1244567
Q ss_pred EEcCCCEEEEEEEEecCCCC--CCCChHHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccC
Q 016489 94 YHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA 170 (388)
Q Consensus 94 y~~~~~~vsVGlv~~l~~~~--~~~~~~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDA 170 (388)
+|.+ +.++|+.....+... ...+..++.+.+. ..|.+.+.+...+... .....|.. ...+++.+.+|++|||||
T Consensus 216 lP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l~-~~~~~~~~~~rv~LvGDA 292 (407)
T PRK06185 216 IDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDVR-VDRLRRWHRPGLLCIGDA 292 (407)
T ss_pred EcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEEe-ccccccccCCCeEEEecc
Confidence 7876 689998877654211 1123344445554 3465555454322211 11222321 122457889999999999
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHh
Q 016489 171 AGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKS 216 (388)
Q Consensus 171 AG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s 216 (388)
|..++|+.|+|++.||.++..+|+.+.+++.. ...|+.|++..+..
T Consensus 293 Ah~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~ 342 (407)
T PRK06185 293 AHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP 342 (407)
T ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH
Confidence 99999999999999999999999999988754 25588888775543
No 22
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.35 E-value=2.8e-11 Score=120.69 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=122.4
Q ss_pred eeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCc
Q 016489 9 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 88 (388)
Q Consensus 9 ~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~ 88 (388)
+.-.+++|.++++++||+|||.+|.+.+++ ++.. ....... .++...+..+. ..+...+..++ + .
T Consensus 140 ~~v~~~~g~~~~~~~vi~adG~~S~vr~~l----~~~~-~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~-~-----~ 204 (385)
T TIGR01988 140 VELTLDDGQQLRARLLVGADGANSKVRQLA----GIPT-TGWDYGQ--SAVVANVKHER--PHQGTAWERFT-P-----T 204 (385)
T ss_pred eEEEECCCCEEEeeEEEEeCCCCCHHHHHc----CCCc-cccccCC--eEEEEEEEecC--CCCCEEEEEec-C-----C
Confidence 333467788899999999999999988764 6542 1111111 12211122221 11222222222 1 2
Q ss_pred ceeEEEEcCCCEEEEEEEEecCC-CC-CCCChHHHHHHHHcC--CCcccccCCCeeeeecceeeccCCCcCCCccccCCE
Q 016489 89 GGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 164 (388)
Q Consensus 89 Gggwiy~~~~~~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~--P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~ 164 (388)
|..|+||..++.+++++.+.... .. ...++.++.+.+... +...++. ........|... ...++.+.+++
T Consensus 205 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~v 278 (385)
T TIGR01988 205 GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAIT-----LVGERHAFPLSL-THAKRYVAPRL 278 (385)
T ss_pred CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceE-----eccCcceeechh-hhhhheecCce
Confidence 45678899888888888654321 11 112344545544321 1111110 011112223321 22456788999
Q ss_pred EEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 165 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 165 lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
+||||||..++|++++|+..||..+..+|+.+.+++.. ...|+.|++..+.. +..-+..++.+..+|.
T Consensus 279 ~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred EEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999887642 35789999888875 3554566677766664
No 23
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.29 E-value=3.9e-10 Score=113.75 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=62.3
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
++...++++||||||..+.|+.++|++.||..+..+|+.+.++++. ...|+.|++..+.. +.+-.+.++.+...++
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred ccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 3566789999999999999999999999999999999999887754 46799999988865 3555666666666554
No 24
>PRK07538 hypothetical protein; Provisional
Probab=99.29 E-value=2.8e-10 Score=115.60 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=107.9
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEE-E-EEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEE
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-L-GIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLY 94 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~-l-gvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy 94 (388)
.+++||+||+|||.+|.+.+++ +.. ...+ .|. + ...... +......+....++|.+ .+..++|
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l----~~~---~~~~-~~~g~~~~~~~~--~~~~~~~~~~~~~~g~~-----~~~~~~~ 214 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQL----YPD---EGPP-RWNGVMMWRGVT--EAPPFLTGRSMVMAGHL-----DGKLVVY 214 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhh----cCC---CCCC-cccceEEEEEee--cCccccCCCcEEEEcCC-----CCEEEEE
Confidence 4899999999999999998865 222 1111 221 1 111111 11122223333333321 1234667
Q ss_pred EcCCC-----EEEEEEEEecCCC-----C-----CCCChHHHHHHHHcC-C---CcccccCC-CeeeeecceeeccCCCc
Q 016489 95 HMNDR-----QIALGLVVALNYH-----N-----PFLNPYEEFQKFKHH-P---AIKPLLEG-GTVVQYGARTLNEGGLQ 154 (388)
Q Consensus 95 ~~~~~-----~vsVGlv~~l~~~-----~-----~~~~~~~~~~~~k~~-P---~i~~~l~~-~~~~~yga~~ip~gg~~ 154 (388)
|..++ ...+.+++..... + ...+..++++.|... + .+.++++. .....| |.....
T Consensus 215 p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----p~~~~~ 289 (413)
T PRK07538 215 PISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY-----PMVDRD 289 (413)
T ss_pred ECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec-----cccccC
Confidence 75432 2334444332111 1 112344555555422 1 13344432 223232 221122
Q ss_pred CCCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHh
Q 016489 155 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARN 227 (388)
Q Consensus 155 ~~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~ 227 (388)
.+++.+.++++||||||..+.|+.++|+..||..+..+|+.+.+.-.....|+.|++.++.. ..+.++..|.
T Consensus 290 ~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s~~ 361 (413)
T PRK07538 290 PLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLANRL 361 (413)
T ss_pred CCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHhhh
Confidence 35677889999999999999999999999999999999999876311146789999988875 4666665555
No 25
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.28 E-value=2.4e-10 Score=114.64 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=117.4
Q ss_pred eecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeE
Q 016489 13 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSF 92 (388)
Q Consensus 13 ~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggw 92 (388)
+++|.++++++||+|||.+|.+.+++ ++.. ...+.. .+.+....... ....+..+..+. ..|..+
T Consensus 150 ~~~g~~~~a~~vI~AdG~~S~vr~~~----~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~------~~g~~~ 214 (395)
T PRK05732 150 LDDGETLTGRLLVAADGSHSALREAL----GIDW--QQHPYE-QVAVIANVTTS--EAHQGRAFERFT------EHGPLA 214 (395)
T ss_pred ECCCCEEEeCEEEEecCCChhhHHhh----CCCc--cceecC-CEEEEEEEEec--CCCCCEEEEeec------CCCCEE
Confidence 55677899999999999999988754 5542 111111 11122112211 111233333222 124567
Q ss_pred EEEcCCCEEEEEEEEecCCC-C-CCCChHHHHHHHHcC-C-CcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEc
Q 016489 93 LYHMNDRQIALGLVVALNYH-N-PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 168 (388)
Q Consensus 93 iy~~~~~~vsVGlv~~l~~~-~-~~~~~~~~~~~~k~~-P-~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvG 168 (388)
++|..++++++.+....+-. + ...+..+.++.+... + .+..+.+..+...| .+.. ...++...++++|||
T Consensus 215 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~---~~~~~~~~grv~LvG 288 (395)
T PRK05732 215 LLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAY---PLAL---VTAAQQISHRLALVG 288 (395)
T ss_pred EeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCccee---cccc---cchhhhccCcEEEEe
Confidence 88998888877665433210 0 112333444444322 1 01111111111111 1111 113456789999999
Q ss_pred cCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 169 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 169 DAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|||..++|++++|+..||.++..+|+.+..++.. ...|+.|++..+.. ....++..+.+.++|.
T Consensus 289 DAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 358 (395)
T PRK05732 289 NAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRLFA 358 (395)
T ss_pred ecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999877643 14689999988775 3556777777777764
No 26
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.27 E-value=1.5e-10 Score=116.62 Aligned_cols=201 Identities=16% Similarity=0.078 Sum_probs=110.4
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++|++||+|||.+|.+.++ +|+.. ........+ +......+.. ..+.....+. ..|..
T Consensus 147 ~~~~g~~~~ad~vI~AdG~~S~vr~~----~g~~~-~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~------~~g~~ 211 (403)
T PRK07333 147 TLSDGSVLEARLLVAADGARSKLREL----AGIKT-VGWDYGQSG--IVCTVEHERP--HGGRAEEHFL------PAGPF 211 (403)
T ss_pred EECCCCEEEeCEEEEcCCCChHHHHH----cCCCc-ccccCCCEE--EEEEEEcCCC--CCCEEEEEeC------CCCce
Confidence 35677889999999999999998775 46652 111111111 1111122211 1222332221 23567
Q ss_pred EEEEcCCCEEEEEEEEecCCCCC--CCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEcc
Q 016489 92 FLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 169 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~~~~--~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGD 169 (388)
|++|..++.+++.+....+.... ..+...+.+.+.+. +...+..-+... .....|.. ...+++.+.++++||||
T Consensus 212 ~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~grv~LvGD 287 (403)
T PRK07333 212 AILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQR--FGHRLGELKVLG-KRRAFPLG-LTLARSFVAPRFALVGD 287 (403)
T ss_pred EEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--hhhhcCceEecc-CccEeech-hhhhhhccCCCEEEEec
Confidence 89999888888755432211000 01122222222211 000111001110 01112221 12345778899999999
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHH-HHHhhhHHHh
Q 016489 170 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQ-RARNYRPAFE 233 (388)
Q Consensus 170 AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~-~~r~~~~~~~ 233 (388)
||..++|+.++|+..||.++..+|+.+.++++. ...|+.|++ .|+. ....+. ..+.+..+|.
T Consensus 288 AAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~-~R~~-~~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 288 AAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR-WRRF-DTVRMGVTTDVLNRLFS 356 (403)
T ss_pred hhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHhH-HHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999887641 466899997 4432 233233 3344444553
No 27
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.27 E-value=1.3e-10 Score=116.30 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=114.0
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++||+||+|||.+|.+.+++ ++.. ....... ..+...+..+.. ........++. .|..
T Consensus 142 ~~~~g~~~~ad~vV~AdG~~S~vr~~l----~~~~-~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~------~g~~ 206 (382)
T TIGR01984 142 TLDNGQQLRAKLLIAADGANSKVRELL----SIPT-EEHDYNQ--TALIANIRHEQP--HQGCAFERFTP------HGPL 206 (382)
T ss_pred EECCCCEEEeeEEEEecCCChHHHHHc----CCCC-cccccCC--EEEEEEEEecCC--CCCEEEEeeCC------CCCe
Confidence 356777899999999999999988754 6552 1111111 222222222111 12222333321 2334
Q ss_pred EEEEcCCC-EEEEEEEEecCCCC--CCCChHHHHHHHHcC--CCcccccCCCeeeeecceeeccCCCcCCCccccCCEEE
Q 016489 92 FLYHMNDR-QIALGLVVALNYHN--PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 166 (388)
Q Consensus 92 wiy~~~~~-~vsVGlv~~l~~~~--~~~~~~~~~~~~k~~--P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lL 166 (388)
+++|..++ .+++.+....+... ...+..++.+.+... +.+.++..-.....+ +..-. ..++...++++|
T Consensus 207 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~rv~L 280 (382)
T TIGR01984 207 ALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTY-----PLKLR-IAETHVHPRVVL 280 (382)
T ss_pred EECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEe-----ecchh-hhhheecCCEEE
Confidence 67787766 66665543322100 112333334444322 111111111111111 11111 244667899999
Q ss_pred EccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 167 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 167 vGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|||||..++|+.++|+..||.++..+|+.+.+++.. ...|+.|++..+..+ ..=++.++.+..+|.
T Consensus 281 vGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 281 IGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQ-FITIGLTDGLNRLFS 349 (382)
T ss_pred EeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999876532 356899998887653 443555666666654
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.22 E-value=4.3e-10 Score=112.70 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=115.6
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++|++||+|||++|.+.+.+ ++.. ...+ ....++...++.+.. .....+++++ ..|..
T Consensus 147 ~~~~g~~~~a~~vI~adG~~S~vr~~~----~~~~--~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~ 211 (388)
T PRK07608 147 TLADGQVLRADLVVGADGAHSWVRSQA----GIKA--ERRP-YRQTGVVANFKAERP--HRGTAYQWFR------DDGIL 211 (388)
T ss_pred EECCCCEEEeeEEEEeCCCCchHHHhc----CCCc--cccc-cCCEEEEEEEEecCC--CCCEEEEEec------CCCCE
Confidence 355677899999999999999987753 6652 1111 111222222232221 1233444432 12456
Q ss_pred EEEEcCCCEEEEEEEEecCCC-C-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEcc
Q 016489 92 FLYHMNDRQIALGLVVALNYH-N-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 169 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~~-~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGD 169 (388)
+++|..++.+++.+....+.. . ...++.++.+.+... +...+..-+.+. .....|..- ..+++.+.++++||||
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~rv~liGD 287 (388)
T PRK07608 212 ALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVT-PAAGFPLRL-QRVDRLVAPRVALVGD 287 (388)
T ss_pred EEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecC-Ccceeecch-hhhhhhhcCceEEEec
Confidence 788998888877664432111 1 112344444444321 000111111110 001122211 1245778899999999
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHhhc--c---CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 170 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH--E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 170 AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~--~---~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
||..+.|++|+|+..||..+..+|+.+..+.. . ...|+.|++..+... ..=.+..+.+..+|.
T Consensus 288 AAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~-~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 288 AAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDI-LALQVATDGLQRLFA 355 (388)
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 99999999999999999999999999976542 1 246899998887642 332444555555553
No 29
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.21 E-value=5.6e-10 Score=112.07 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=114.0
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++||+||+|||.+|.+.+++ ++.. ......+.++-+ .+..+ .........++. + .|..
T Consensus 147 ~~~~g~~~~a~~vI~AdG~~S~vr~~~----g~~~-~~~~~~~~~~~~--~v~~~--~~~~~~~~~~~~-~-----~g~~ 211 (388)
T PRK07494 147 TLADGTTLSARLVVGADGRNSPVREAA----GIGV-RTWSYPQKALVL--NFTHS--RPHQNVSTEFHT-E-----GGPF 211 (388)
T ss_pred EECCCCEEEEeEEEEecCCCchhHHhc----CCCc-eecCCCCEEEEE--EEecc--CCCCCEEEEEeC-C-----CCcE
Confidence 356677899999999999999987754 6652 111112222211 11111 111222222222 1 2556
Q ss_pred EEEEcCCCEEEEEEEEecCC-CC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEcc
Q 016489 92 FLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 169 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGD 169 (388)
++||..++..++-..+..+. .. ...++.++.+.+.. .+.+++...+... .....|..... .++.+.++++|+||
T Consensus 212 ~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~~l~~~~-~~~~~~~rv~LiGD 287 (388)
T PRK07494 212 TQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLEP-GRQAWPLSGQV-AHRFAAGRTALVGE 287 (388)
T ss_pred EEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEcc-CCcEeechHHH-HHhhccCceEEEEh
Confidence 78898877777665443321 00 12344444444432 1223332211111 11112221111 24667899999999
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 170 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 170 AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
||..+.|+.|+|+..||..+...|+.+.+.... ...|+.|++..+.. +..-+.....+...|
T Consensus 288 AAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 288 AAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred hhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764433 35689999888764 233233444444444
No 30
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.21 E-value=6.7e-10 Score=112.39 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=108.2
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEc
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHM 96 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~ 96 (388)
.+++||+||+|||++|.+.+++ ++.. ....... ..+......+ ........+.+ |+ .|..|+||.
T Consensus 166 ~~i~adlvIgADG~~S~vR~~~----~~~~-~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~-~~-----~g~~~~~p~ 230 (415)
T PRK07364 166 QTLQSKLVVAADGARSPIRQAA----GIKT-KGWKYWQ--SCVTATVKHE--APHNDIAYERF-WP-----SGPFAILPL 230 (415)
T ss_pred eEEeeeEEEEeCCCCchhHHHh----CCCc-eeecCCC--EEEEEEEEcc--CCCCCEEEEEe-cC-----CCCeEEeEC
Confidence 4699999999999999998754 5542 0111111 1122112211 11122222222 11 245689999
Q ss_pred CCCEEEEEEEEecCC-CC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCcccc
Q 016489 97 NDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFL 174 (388)
Q Consensus 97 ~~~~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~v 174 (388)
.++.+++.+....+. .+ ...+..+..+.+++. +...+..-+.++ .....|.... ..++.+.++++||||||..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~ 306 (415)
T PRK07364 231 PGNRCQIVWTAPHAQAKALLALPEAEFLAELQQR--YGDQLGKLELLG-DRFLFPVQLM-QSDRYVQHRLALVGDAAHCC 306 (415)
T ss_pred CCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--hhhhhcCceecC-CCceecchhh-hhhhhcCCcEEEEecccccC
Confidence 888887755432210 10 112233333433311 011111111111 0011121111 13466789999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 175 NVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 175 dp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
+|+.++|+..||..+..+|+.+..+++. ...|+.|++..+.. ...=++..+.+.++|.
T Consensus 307 ~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 307 HPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred CCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999877632 25689999855442 3333445555555554
No 31
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.20 E-value=1.5e-09 Score=108.96 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=108.5
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEE-EEcCCCCCCCCcce
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEIL-HTLGWPLDQKTYGG 90 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~-~~~G~p~~~~~~Gg 90 (388)
.+.++ +++|++||+|||.+|.+.+.+ +... ... .|..++. +.++.+....+..+ ++. ..|.
T Consensus 141 ~~~~~-~~~adlvIgADG~~S~vR~~l----~~~~--~~~--~y~~~~~--~~v~~~~~~~~~~~~~~~-------~~g~ 202 (374)
T PRK06617 141 KFDDK-QIKCNLLIICDGANSKVRSHY----FANE--IEK--PYQTALT--FNIKHEKPHENCAMEHFL-------PLGP 202 (374)
T ss_pred EEcCC-EEeeCEEEEeCCCCchhHHhc----CCCc--ccc--cCCeEEE--EEEeccCCCCCEEEEEec-------CCCC
Confidence 35555 999999999999999998864 5541 111 1222222 23332222233323 332 1244
Q ss_pred eEEEEcCCCEE-EEEEEEecCCCCC-CCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEc
Q 016489 91 SFLYHMNDRQI-ALGLVVALNYHNP-FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 168 (388)
Q Consensus 91 gwiy~~~~~~v-sVGlv~~l~~~~~-~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvG 168 (388)
.+++|..++.. ++-..+..+.... ...+.+.|..+... .+.+.+..-. +.......|.... ..++.+.++++|||
T Consensus 203 ~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~~~~~~~l~~~-~~~~~~~grv~LiG 279 (374)
T PRK06617 203 FALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQR-NAGNSLGKIT-IDSEISSFPLKAR-IANRYFHNRIVLIA 279 (374)
T ss_pred EEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHH-hhchhcCcee-eccceeEEEeeee-eccceecCCEEEEE
Confidence 68889987753 3333332110000 01122333322221 1122221100 1101111222111 24577899999999
Q ss_pred cCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 169 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 169 DAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|||-.+.|+.++|+..||..+...|+.+. ....|+.|+++-+.. ...=+...+.+..+|.
T Consensus 280 DAAH~~~P~~GQG~n~gl~Da~~La~~L~----~~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 280 DTAHTVHPLAGQGLNQGIKDIEILSMIVS----NNGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred cccccCCCCccccHHHHHHHHHHHHHHHc----CcchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999998888762 235789999877654 3444555566666664
No 32
>PRK07588 hypothetical protein; Provisional
Probab=99.19 E-value=2.1e-09 Score=108.21 Aligned_cols=207 Identities=15% Similarity=0.134 Sum_probs=112.1
Q ss_pred CeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEE-EEEecCCCCCCCCcEE-EEcCCCCC
Q 016489 7 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIK-EVWEIDEGKHNPGEIL-HTLGWPLD 84 (388)
Q Consensus 7 G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvk-e~~~~~~~~~~~g~v~-~~~G~p~~ 84 (388)
+.+.-.+++|.++++++||+|||++|.+.+.+ ++.. .....| .+.. ....++.....+.... ++.+ +
T Consensus 133 ~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~---~~~~----~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~-- 201 (391)
T PRK07588 133 DGVRVTFERGTPRDFDLVIGADGLHSHVRRLV---FGPE----RDFEHY-LGCKVAACVVDGYRPRDERTYVLYNE-V-- 201 (391)
T ss_pred CeEEEEECCCCEEEeCEEEECCCCCccchhhc---cCCc----cceEEE-cCcEEEEEEcCCCCCCCCceEEEEeC-C--
Confidence 33444577888899999999999999997753 2322 111111 2211 0111211111122222 2221 1
Q ss_pred CCCcceeEEEEcCCCEEEEEEEEecCCCCCCCChHHHHH----HHHcC-CCcccc---cCCCeeeeecceeeccCCCcCC
Q 016489 85 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ----KFKHH-PAIKPL---LEGGTVVQYGARTLNEGGLQSI 156 (388)
Q Consensus 85 ~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~----~~k~~-P~i~~~---l~~~~~~~yga~~ip~gg~~~~ 156 (388)
.++..+||..++...+.+.+..+...+..+..+..+ .|... +....+ +.....+.+. .++. ..+
T Consensus 202 ---g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~ 273 (391)
T PRK07588 202 ---GRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFD--VVSQ---IRM 273 (391)
T ss_pred ---CCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhee--eeee---ecc
Confidence 123457787766666555554432222223322222 22221 211222 2211111110 0000 123
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
++.+.++++||||||..+.|+.++|+..||..+...|+.+.+.... ...|+.|++..+.. +..-...++.+...|+
T Consensus 274 ~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 274 DRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFA 350 (391)
T ss_pred CccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhccccccccc
Confidence 4667899999999999999999999999999999999888653322 45689999888764 3443444555555553
No 33
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.18 E-value=1.9e-09 Score=108.29 Aligned_cols=185 Identities=13% Similarity=0.075 Sum_probs=105.4
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++|++||+|||++|.+.+++ ++.. ......+.++-+ ....+. ...+..++.+.. .|..
T Consensus 149 ~~~~g~~~~a~~vI~AdG~~S~vR~~~----~~~~-~~~~y~~~~~~~--~~~~~~--~~~~~~~~~~~~------~g~~ 213 (391)
T PRK08020 149 TLADGEEIQAKLVIGADGANSQVRQMA----GIGV-HGWQYRQSCMLI--SVKCEN--PPGDSTWQQFTP------SGPR 213 (391)
T ss_pred EECCCCEEEeCEEEEeCCCCchhHHHc----CCCc-cccCCCceEEEE--EEEecC--CCCCEEEEEEcC------CCCE
Confidence 356777899999999999999988754 6542 111111222211 112221 112333433321 1334
Q ss_pred EEEEcCCCEEEEEEEEecCC-CC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEcc
Q 016489 92 FLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 169 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGD 169 (388)
.++|..++..+++....... .. ...+..++.+.+.+. +.+.+. +.........|..- ...++...+|++||||
T Consensus 214 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~pl~~-~~~~~~~~~rv~LvGD 288 (391)
T PRK08020 214 AFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAH--FPARLG--AVTPVAAGAFPLTR-RHALQYVQPGLALVGD 288 (391)
T ss_pred EEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--hhhhcc--ceEeccccEeecce-eehhhhccCcEEEEec
Confidence 67788777777766433210 00 012233333333321 011111 11111122233321 1245778899999999
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHh
Q 016489 170 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKS 216 (388)
Q Consensus 170 AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s 216 (388)
||..+.|+.++|+..||..+..+|+.+.++.+. ...|+.|++.-+..
T Consensus 289 AAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 341 (391)
T PRK08020 289 AAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD 341 (391)
T ss_pred hhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877532 25688888766543
No 34
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.17 E-value=3.2e-09 Score=106.75 Aligned_cols=206 Identities=13% Similarity=0.084 Sum_probs=117.0
Q ss_pred eeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecC--CCCCCCCcEEEEcCCCCCCC
Q 016489 9 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID--EGKHNPGEILHTLGWPLDQK 86 (388)
Q Consensus 9 ~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~--~~~~~~g~v~~~~G~p~~~~ 86 (388)
+.-.+++|.+++|++||+|||++|.+.+++ ++.. ..... ... +...+..+ ++.........+.|
T Consensus 143 v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~---~g~~--~~~~g-~~~--~~~~~~~~~~~~~~~~~~~~~~~g------ 208 (396)
T PRK08163 143 VTVFDQQGNRWTGDALIGCDGVKSVVRQSL---VGDA--PRVTG-HVV--YRAVIDVDDMPEDLRINAPVLWAG------ 208 (396)
T ss_pred eEEEEcCCCEEecCEEEECCCcChHHHhhc---cCCC--CCccc-cEE--EEEEEeHHHCcchhccCccEEEEc------
Confidence 333466788899999999999999997754 2332 11111 111 12222211 11111111222222
Q ss_pred CcceeEEEEcCCCE-EEEEEEEecCCC----CCCCChHHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCCccc
Q 016489 87 TYGGSFLYHMNDRQ-IALGLVVALNYH----NPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 160 (388)
Q Consensus 87 ~~Gggwiy~~~~~~-vsVGlv~~l~~~----~~~~~~~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~ 160 (388)
..+..|+||..++. +++.+....+.. ....+..++++.|. -+|.+.++++....... ..+.. ...+++.+
T Consensus 209 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~ 284 (396)
T PRK08163 209 PHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WATAD--REPVAKWS 284 (396)
T ss_pred CCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--ccccC--CCcccccc
Confidence 12445788886543 444433322211 11224455566665 35666666654332210 11111 11234666
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
.++++||||||..+.|+.++|+..||.++...|+.+...-.. ...|+.|++..+.. ..+=.+.++.+..+++
T Consensus 285 ~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 285 TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 789999999999999999999999999999999987643222 45689999888764 3443445555555553
No 35
>PRK08244 hypothetical protein; Provisional
Probab=99.15 E-value=8.8e-09 Score=107.13 Aligned_cols=179 Identities=9% Similarity=0.008 Sum_probs=104.6
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEc
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHM 96 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~ 96 (388)
.+++|++||+|||++|.+.+++ |+.- ....... .++.....+.. ..++....+++ ..|..|++|.
T Consensus 144 ~~i~a~~vVgADG~~S~vR~~l----gi~~-~g~~~~~--~~~~~~~~~~~--~~~~~~~~~~~------~~g~~~~~P~ 208 (493)
T PRK08244 144 RTLTSSYVVGADGAGSIVRKQA----GIAF-PGTDATF--TAMLGDVVLKD--PPPSSVLSLCT------REGGVMIVPL 208 (493)
T ss_pred EEEEeCEEEECCCCChHHHHhc----CCCc-cCCCcce--EEEEEEEEecC--CCCcceeEEEe------CCceEEEEEC
Confidence 4799999999999999988754 6652 1121111 12211122221 11222333332 2356789999
Q ss_pred CCCEEEEEEEEecCCC---CCCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEccCccc
Q 016489 97 NDRQIALGLVVALNYH---NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGF 173 (388)
Q Consensus 97 ~~~~vsVGlv~~l~~~---~~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~ 173 (388)
.++..++.+....... ....+..++.+.+.... ...+...+.. +-.. .+.. ....++...++++|+||||-.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~~-~~~~-~~~a~~~~~gRv~L~GDAAH~ 283 (493)
T PRK08244 209 SGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRIC--GTDFGLNDPV-WMSR-FGNA-TRQAERYRSGRIFLAGDAAHI 283 (493)
T ss_pred CCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhh--CCCCCcCCee-EEEe-cccc-eeeHhhhccCcEEEeecceec
Confidence 8888888654322111 11234555555554221 0111100111 1000 0100 011245667899999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH
Q 016489 174 LNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 215 (388)
Q Consensus 174 vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 215 (388)
+.|+.++|++.||..+...|+.+..++++ ...|+.|+++.+.
T Consensus 284 ~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~ 328 (493)
T PRK08244 284 HFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHP 328 (493)
T ss_pred cCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHH
Confidence 99999999999999999999999888865 4568999986554
No 36
>PRK08013 oxidoreductase; Provisional
Probab=99.13 E-value=2.6e-09 Score=108.07 Aligned_cols=202 Identities=12% Similarity=0.018 Sum_probs=112.5
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++||+||+|||++|.+.+++ ++.. ........++ ...+.. +....+.....+. ..|..
T Consensus 148 ~~~~g~~i~a~lvVgADG~~S~vR~~~----~~~~-~~~~~~~~~~--~~~v~~--~~~~~~~~~~~~~------~~g~~ 212 (400)
T PRK08013 148 TLKDGSMLTARLVVGADGANSWLRNKA----DIPL-TFWDYQHHAL--VATIRT--EEPHDAVARQVFH------GDGIL 212 (400)
T ss_pred EEcCCCEEEeeEEEEeCCCCcHHHHHc----CCCc-cccccCcEEE--EEEEec--cCCCCCEEEEEEc------CCCCE
Confidence 467888999999999999999998864 6652 1122222222 111222 2212333332221 12445
Q ss_pred EEEEcCCC-EEEEEEEEecCC-CC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEc
Q 016489 92 FLYHMNDR-QIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 168 (388)
Q Consensus 92 wiy~~~~~-~vsVGlv~~l~~-~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvG 168 (388)
+++|..++ ..++...+..+. .. ...+..++.+.+... +...+...+.... ....|.... ..++.+.++++|||
T Consensus 213 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~-~~~~~l~~~-~~~~~~~grv~LiG 288 (400)
T PRK08013 213 AFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIA--FDNRLGLCELESE-RQVFPLTGR-YARQFAAHRLALVG 288 (400)
T ss_pred EEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHH--HhHhhCceEecCC-ccEEeccee-ecccccCCcEEEEe
Confidence 67787654 466666544321 11 112233333433311 0111111122110 001121111 24678899999999
Q ss_pred cCccccCCCCccchHHHHHHHHHHHHHHHHhhcc----C--chHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 169 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 169 DAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----~--~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|||-.+.|+.|+|+..||..+...|+.+...+.. . ..|+.|+++.+. ....-+...+.+..+|.
T Consensus 289 DAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~-~~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 289 DAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKH-SAALMLAGMQGFRDLFA 358 (400)
T ss_pred chhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988776532 1 258999987544 33333334455555553
No 37
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.12 E-value=7.6e-09 Score=106.09 Aligned_cols=206 Identities=16% Similarity=0.122 Sum_probs=116.7
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+.+|.+++|++||+|||++|.+.+++ |+.. ......+.++ -..+...... .++..+..+. + .|--
T Consensus 163 ~~~~g~~i~a~llVgADG~~S~vR~~~----gi~~-~g~~y~q~~~--v~~v~~~~~~-~~~~~~~~f~-~-----~g~~ 228 (437)
T TIGR01989 163 TLSDGQVLYTKLLIGADGSNSNVRKAA----NIDT-TGWNYNQHAV--VATLKLEEAT-ENDVAWQRFL-P-----TGPI 228 (437)
T ss_pred EEcCCCEEEeeEEEEecCCCChhHHHc----CCCc-cceeeccEEE--EEEEEcccCC-CCCeEEEEEC-C-----CCCE
Confidence 367888999999999999999998854 7662 1121112222 1112222111 1233443332 1 2334
Q ss_pred EEEEcCCCEEEEEEEEecCCCC--CCCChHHHHHHHHc--------CCC-------cccccC--C----C----------
Q 016489 92 FLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKH--------HPA-------IKPLLE--G----G---------- 138 (388)
Q Consensus 92 wiy~~~~~~vsVGlv~~l~~~~--~~~~~~~~~~~~k~--------~P~-------i~~~l~--~----~---------- 138 (388)
.+.|..++..++.+........ ...++.++.+.+.. .|. ++.+++ + +
T Consensus 229 ~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 308 (437)
T TIGR01989 229 ALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPR 308 (437)
T ss_pred EEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCch
Confidence 5678888888877655432110 12334343333311 011 000000 0 0
Q ss_pred --eeeeecceeeccCCCcCCCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHH
Q 016489 139 --TVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYW 210 (388)
Q Consensus 139 --~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~ 210 (388)
+.........|. .....++...++++|+||||..+.|+.|+|++.||..+...|+.+.++++. ...|+.|+
T Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~ 387 (437)
T TIGR01989 309 VIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYE 387 (437)
T ss_pred hheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 000000012222 122345778899999999999999999999999999999999999887753 24688998
Q ss_pred HHHHHhhhHHHHHHHHhhhHHHh
Q 016489 211 DTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 211 ~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
+.-+.. ...=+...+.+..+|.
T Consensus 388 ~~R~~~-~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 388 RERYAK-NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHc
Confidence 777653 2333444555555554
No 38
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.10 E-value=5.4e-09 Score=105.65 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=62.3
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
++.+.++++||||||..+.|+.++|+..||.++...|+.+.++... ...|+.|++..+.+ +.+-.+.++.+..+++
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred ccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999999999999998776543 46789999887765 3565666777766654
No 39
>PRK05868 hypothetical protein; Validated
Probab=99.09 E-value=6.4e-09 Score=104.48 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=103.7
Q ss_pred eeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEE-EEEEecCCCCCCCCcEEE-EcCCCCCC
Q 016489 8 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGI-KEVWEIDEGKHNPGEILH-TLGWPLDQ 85 (388)
Q Consensus 8 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgv-ke~~~~~~~~~~~g~v~~-~~G~p~~~ 85 (388)
.+.-.+++|.+++|++||+|||.+|.+.+++ ++-. ..... .+|. ..+..++.. ........ ++|. .
T Consensus 136 ~v~v~~~dg~~~~adlvIgADG~~S~vR~~~---~~~~---~~~~~--~~g~~~~~~~~~~~-~~~~~~~~~~~g~---~ 203 (372)
T PRK05868 136 SVRVTFERAAAREFDLVIGADGLHSNVRRLV---FGPE---EQFVK--RLGTHAAIFTVPNF-LELDYWQTWHYGD---S 203 (372)
T ss_pred eEEEEECCCCeEEeCEEEECCCCCchHHHHh---cCCc---cccee--ecceEEEEEEcCCC-CCCCcceEEEecC---C
Confidence 3444588898999999999999999998875 3322 11111 1221 222233322 11222222 1231 0
Q ss_pred CCcceeEEEEcCC-CEEEEEEEEecC-CCCC-C---CChHHHHHHHHcC----CCcccccCCCeeeeecceeeccCCCcC
Q 016489 86 KTYGGSFLYHMND-RQIALGLVVALN-YHNP-F---LNPYEEFQKFKHH----PAIKPLLEGGTVVQYGARTLNEGGLQS 155 (388)
Q Consensus 86 ~~~Gggwiy~~~~-~~vsVGlv~~l~-~~~~-~---~~~~~~~~~~k~~----P~i~~~l~~~~~~~yga~~ip~gg~~~ 155 (388)
....+|+..+ +..+..+..... .... . .+..++.+.|... |.+.+.+......-+.. +. -..
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~--~~---~~~ 275 (372)
T PRK05868 204 ---TMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDE--MS---QIL 275 (372)
T ss_pred ---cEEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeecc--ce---EEe
Confidence 1224677654 344544433321 1100 0 1122333444321 22222322221111110 00 012
Q ss_pred CCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHH
Q 016489 156 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQK 215 (388)
Q Consensus 156 ~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~ 215 (388)
+++.+.++++||||||-.+.|+.|+|...||..+...|+.+...-.. ...|+.|++.++.
T Consensus 276 ~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~ 336 (372)
T PRK05868 276 MDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHG 336 (372)
T ss_pred cCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhH
Confidence 45667899999999999999999999999999999999988543222 4679999999877
No 40
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.08 E-value=6.2e-09 Score=105.26 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=112.5
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
.+++|.+++|++||+|||++|.+.+++ +... ........++ +.. ...+. ......+..++ + .|..
T Consensus 148 ~~~~g~~~~a~~vVgAdG~~S~vR~~l----g~~~-~~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~-~-----~g~~ 212 (405)
T PRK05714 148 TLADGRQLRAPLVVAADGANSAVRRLA----GCAT-REWDYLHHAI-VTS-VRCSE--PHRATAWQRFT-D-----DGPL 212 (405)
T ss_pred EECCCCEEEeCEEEEecCCCchhHHhc----CCCc-ccccCCceEE-EEE-EEcCC--CCCCEEEEEcC-C-----CCCe
Confidence 367777899999999999999987754 6542 1111111111 111 12221 11223333332 1 2445
Q ss_pred EEEEcCCC----EEEEEEEEecCCCC--CCCChHHHHHHHHcC--CCcccccCCCeeeeecceeeccCCCcCCCccccCC
Q 016489 92 FLYHMNDR----QIALGLVVALNYHN--PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 163 (388)
Q Consensus 92 wiy~~~~~----~vsVGlv~~l~~~~--~~~~~~~~~~~~k~~--P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g 163 (388)
++||..++ .+++......+... ...+..++.+.+.+. +.+.+++.......| |..- ...++...++
T Consensus 213 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~l~~-~~~~~~~~~r 286 (405)
T PRK05714 213 AFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCV-----PLRQ-RHAKRYVEPG 286 (405)
T ss_pred EEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEE-----ecce-eehhhhccCC
Confidence 67787532 24555443321100 012333333333211 122223222222222 2111 1245778899
Q ss_pred EEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 164 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 164 ~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
++|+||||-.+.|+.++|+..||..+...|+.+.+++.. ...|+.|++..+.. ..+=.+..+.+..+|+
T Consensus 287 v~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 361 (405)
T PRK05714 287 LALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAMEGFERLFQ 361 (405)
T ss_pred EEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999998776532 25689999877664 3554555666666664
No 41
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.07 E-value=6.4e-09 Score=105.33 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=112.0
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEE-EEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcce
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG 90 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~-lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gg 90 (388)
.+++|.+++|++||+|||++|.+.+++ ++.. . ...|. .++...+..+. ...+..+.+++. .|.
T Consensus 148 ~~~~g~~~~a~lvIgADG~~S~vR~~~----~~~~--~--~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~------~g~ 211 (405)
T PRK08850 148 TLDNGQALTAKLVVGADGANSWLRRQM----DIPL--T--HWDYGHSALVANVRTVD--PHNSVARQIFTP------QGP 211 (405)
T ss_pred EECCCCEEEeCEEEEeCCCCChhHHHc----CCCe--e--EEeeccEEEEEEEEccC--CCCCEEEEEEcC------CCc
Confidence 366788999999999999999998864 6652 1 11221 22222222221 123334444431 132
Q ss_pred eEEEEcCC-CEEEEEEEEecCCCC--CCCChHHHHHHHHcC--CCcccccCCCeeeeecceeeccCCCcCCCccccCCEE
Q 016489 91 SFLYHMND-RQIALGLVVALNYHN--PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 165 (388)
Q Consensus 91 gwiy~~~~-~~vsVGlv~~l~~~~--~~~~~~~~~~~~k~~--P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~l 165 (388)
..++|..+ +..++......+... ...+..++.+.+... +.+..+-.......| |.. ....++.+.++++
T Consensus 212 ~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----pl~-~~~~~~~~~~rv~ 285 (405)
T PRK08850 212 LAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAF-----PLK-MRYARDFVRERVA 285 (405)
T ss_pred eEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEE-----ecc-eeeccccccCcEE
Confidence 35668764 456776654332111 112223333333211 111100000011111 111 1113577889999
Q ss_pred EEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 166 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 166 LvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|+||||-.+.|+.|+|+..||..+...|+.+.+++.. ...|+.|+++-+.. ..+=+...+.+.++|.
T Consensus 286 LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~~ 358 (405)
T PRK08850 286 LVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLFS 358 (405)
T ss_pred EEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999876632 25689999655442 3443444555666554
No 42
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.07 E-value=1.5e-08 Score=102.33 Aligned_cols=205 Identities=15% Similarity=0.053 Sum_probs=120.0
Q ss_pred eeeee-cCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCc
Q 016489 10 KENFQ-RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 88 (388)
Q Consensus 10 ~~~~~-~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~ 88 (388)
..+++ +|.+++|++||+|||.+|.+.+++ +.............+.+ .... +...++..+..+. + .
T Consensus 139 ~v~l~~dG~~~~a~llVgADG~~S~vR~~~----~~~~~~~~~y~~~~l~~--~~~~--~~~~~~~~~~~~~-~-----~ 204 (387)
T COG0654 139 TVTLSFDGETLDADLLVGADGANSAVRRAA----GIAEFSGRDYGQTALVA--NVEP--EEPHEGRAGERFT-H-----A 204 (387)
T ss_pred EEEEcCCCcEEecCEEEECCCCchHHHHhc----CCCCccCCCCCceEEEE--Eeec--CCCCCCeEEEEec-C-----C
Confidence 34456 888999999999999999998864 52210111122222221 1122 2112344443332 1 2
Q ss_pred ceeEEEEcCCCEEEEEEEEecCC--CCCCCChHHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEE
Q 016489 89 GGSFLYHMNDRQIALGLVVALNY--HNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 165 (388)
Q Consensus 89 Gggwiy~~~~~~vsVGlv~~l~~--~~~~~~~~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~l 165 (388)
|..-++|.+++..++-+...... .....+..++.+.+. ..|.... + +...........|..... ..+...++++
T Consensus 205 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~pl~~~~-a~~~~~~Rv~ 281 (387)
T COG0654 205 GPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-L-GRVTLVSSRSAFPLSLRV-AERYRRGRVV 281 (387)
T ss_pred CceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-c-ceEEEccccccccccchh-hhheecCcEE
Confidence 32347788766677766655431 122344454444443 2232211 1 111111112233433333 2367789999
Q ss_pred EEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 166 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 166 LvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
|+||||-.+.|+.++|++.||.-+...|+.+.++... ...|+.|+++.+.. +.+=...++.+...|
T Consensus 282 LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~ 350 (387)
T COG0654 282 LIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLF 350 (387)
T ss_pred EEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999998874 46689999877664 344344444444444
No 43
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.05 E-value=1.1e-08 Score=102.94 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=105.1
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEE-EEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcce
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG 90 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~-lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gg 90 (388)
.+++|.+++|++||+|||.+|.+.+. +|+.. . ...|. .++-..++.+ ...++..+..++ + .|.
T Consensus 149 ~~~~g~~~~a~~vV~AdG~~S~vr~~----~g~~~--~--~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-~-----~g~ 212 (392)
T PRK08773 149 RLDDGRRLEAALAIAADGAASTLREL----AGLPV--S--RHDYAQRGVVAFVDTE--HPHQATAWQRFL-P-----TGP 212 (392)
T ss_pred EECCCCEEEeCEEEEecCCCchHHHh----hcCCc--e--EEEeccEEEEEEEEcc--CCCCCEEEEEeC-C-----CCc
Confidence 35667789999999999999988775 36652 1 11121 2222222221 112233333332 1 233
Q ss_pred eEEEEcCCCEEEEEEEEecC-CCC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCCCcCCCccccCCEEEEc
Q 016489 91 SFLYHMNDRQIALGLVVALN-YHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 168 (388)
Q Consensus 91 gwiy~~~~~~vsVGlv~~l~-~~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvG 168 (388)
..++|..++..++...+..+ ..+ ...+..+..+.+... +.+.+..-+.... ....|.. ....++.+.++++|+|
T Consensus 213 ~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~rv~LiG 288 (392)
T PRK08773 213 LALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQA--FAARLGEVRVASP-RTAFPLR-RQLVQQYVSGRVLTLG 288 (392)
T ss_pred EEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhhcCeEecCC-ccEeech-hhhhhhhcCCcEEEEe
Confidence 56888887777777655321 110 012223333333211 0111111011100 0011211 1124577889999999
Q ss_pred cCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHHHHHHh
Q 016489 169 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKS 216 (388)
Q Consensus 169 DAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~s 216 (388)
|||..+.|+.|+|++.||..+...|+.+.+++.. ...|++|++.-+..
T Consensus 289 DAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 289 DAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred chhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887743 25688998776553
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.04 E-value=1.5e-08 Score=107.20 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=92.3
Q ss_pred cCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEE-EEEecCCCCCCCCcEEEEcCCCCCCCCcceeEE
Q 016489 15 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIK-EVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 93 (388)
Q Consensus 15 ~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvk-e~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwi 93 (388)
.+.+++|++||+|||++|.+.+++ +... +.........|+. .-..++. ++....++|. .|-.++
T Consensus 202 ~g~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~~~~~lp~----~~~~~v~~g~------~gpi~~ 266 (567)
T PTZ00367 202 VRKVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVLKNVRLPK----EQHGTVFLGK------TGPILS 266 (567)
T ss_pred cceEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEEecccCCC----CCeeEEEEcC------CceEEE
Confidence 367899999999999999998875 4431 1112223333421 0012221 2222233442 255689
Q ss_pred EEcCCCEEEEEEEEecCCCCCCC-ChHHHHHHHHcCCC----ccccc----CC-CeeeeecceeeccCCCcCCCccccCC
Q 016489 94 YHMNDRQIALGLVVALNYHNPFL-NPYEEFQKFKHHPA----IKPLL----EG-GTVVQYGARTLNEGGLQSIPYPVFPG 163 (388)
Q Consensus 94 y~~~~~~vsVGlv~~l~~~~~~~-~~~~~~~~~k~~P~----i~~~l----~~-~~~~~yga~~ip~gg~~~~p~~~~~g 163 (388)
||..++.+.+.+.+... ..|.. ...+++.+.. .|. +++.+ .. +.. +..|...+.. .+.+.+|
T Consensus 267 yPl~~~~~r~lv~~~~~-~~p~~~~~~~~l~~~~-~p~l~~~l~~~f~~~l~~~~~l-----~~~p~~~~p~-~~~~~~g 338 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKP-TLPSLEEQSEWLIEDV-APHLPENMRESFIRASKDTKRI-----RSMPNARYPP-AFPSIKG 338 (567)
T ss_pred EEcCCCeEEEEEEecCC-cCCChHHHHHHHHHhh-cccCcHHHHHHHHHhhcccCCe-----EEeeHhhCCC-ccCCCCC
Confidence 99998888887765432 11111 1122222110 111 11111 11 111 1122222221 1457789
Q ss_pred EEEEccCccccCCCCccchHHHHHHHHHHHHHHHHh
Q 016489 164 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 164 ~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
++|+||||-++.|++|+|+..||..+...|+.+...
T Consensus 339 vvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~ 374 (567)
T PTZ00367 339 YVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGI 374 (567)
T ss_pred EEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988653
No 45
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.98 E-value=2.3e-08 Score=95.72 Aligned_cols=156 Identities=21% Similarity=0.288 Sum_probs=97.9
Q ss_pred EecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEcCCC
Q 016489 20 RGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR 99 (388)
Q Consensus 20 ~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~~~~ 99 (388)
.|+.||.|||+-|.+.|++ . . .......+.+|+. +. +.+...++..+.++|.+ +--.+|+.+.+
T Consensus 1 ~A~LtivaDG~~S~fRk~l----~-~--~~~~v~S~fvGl~-l~--~~~lp~~~~ghvil~~~------~pil~YqI~~~ 64 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKEL----S-D--NKPQVRSYFVGLI-LK--DAPLPKPNHGHVILGKP------GPILLYQISSN 64 (276)
T ss_pred CCCEEEEecCCchHHHHhh----c-C--CCCceeeeEEEEE-Ec--CCCCCCCCceEEEEcCC------CcEEEEEcCCC
Confidence 3789999999999998875 3 2 1233345667753 11 11222344445556653 33589999877
Q ss_pred EEEEEEEEecCCCCCCC---ChHHHHHHHHcCCCccc--------ccCCCeeeeecceeeccCCCcCCCccccCCEEEEc
Q 016489 100 QIALGLVVALNYHNPFL---NPYEEFQKFKHHPAIKP--------LLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 168 (388)
Q Consensus 100 ~vsVGlv~~l~~~~~~~---~~~~~~~~~k~~P~i~~--------~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~lLvG 168 (388)
.++|-+-+..+ +-|.. +..+++++... |.+-+ -++++ ..|..|..-+.+ .....+|++++|
T Consensus 65 etR~Lvdvp~~-k~P~~~~g~l~~yl~~~v~-P~LP~~lr~~f~~al~~~-----rirsMPn~~lp~-~~~~~~G~vllG 136 (276)
T PF08491_consen 65 ETRVLVDVPGP-KLPSVSNGELKEYLREVVA-PQLPEELRPSFEKALEDG-----RIRSMPNSFLPA-SPNWKPGVVLLG 136 (276)
T ss_pred ceEEEEEeCCC-ccCCccchHHHHHHHHHHH-hhchHHHHHHHHHHhccC-----CcceecccccCC-CCCCCCCEEEEe
Confidence 78877766544 12322 22333332211 32222 23333 234556543332 245669999999
Q ss_pred cCccccCCCCccchHHHHHHHHHHHHHHHHh
Q 016489 169 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 169 DAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
||+.+.+|+||+||..|+....+.++.+...
T Consensus 137 DA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 137 DAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred hhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999988665
No 46
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.98 E-value=4.8e-08 Score=102.81 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=61.3
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
++...++++|+||||-.+.|+.++|+..||..+...|+.+...+++ ...|+.|+++.+.. +.+-++.++.+..++
T Consensus 281 ~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 281 DRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVI 358 (538)
T ss_pred hhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhc
Confidence 4566789999999999999999999999999999999988766654 35789999988875 456566666666655
No 47
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.93 E-value=4.3e-08 Score=99.55 Aligned_cols=211 Identities=16% Similarity=0.118 Sum_probs=116.5
Q ss_pred eeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceE-EEEEEEEEecCC---C----CCCC---CcEEE
Q 016489 9 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDE---G----KHNP---GEILH 77 (388)
Q Consensus 9 ~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~-~lgvke~~~~~~---~----~~~~---g~v~~ 77 (388)
+.-.+++|.+++|++||+|||.+|.+.+++....+.. ...++.. ...+..+...+. . ..++ .....
T Consensus 136 ~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (414)
T TIGR03219 136 VQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQM 212 (414)
T ss_pred EEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccceE
Confidence 3444788889999999999999999988763211111 1122111 112222221110 0 0001 11122
Q ss_pred EcCCCCCCCCcceeEEEEcCCCE-EEEEEEEecC-CC------C----CCCChHHHHHHHH-cCCCcccccCCCeeeeec
Q 016489 78 TLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVALN-YH------N----PFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYG 144 (388)
Q Consensus 78 ~~G~p~~~~~~Gggwiy~~~~~~-vsVGlv~~l~-~~------~----~~~~~~~~~~~~k-~~P~i~~~l~~~~~~~yg 144 (388)
++|. .+..++|+..++. +++....... .. . ...+..++++.|. -+|.++++++.-....
T Consensus 213 ~~~~------~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~-- 284 (414)
T TIGR03219 213 YLGL------DGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT-- 284 (414)
T ss_pred EEcC------CCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC--
Confidence 2321 2344577876554 3333322110 00 0 1123344555554 2344555554322111
Q ss_pred ceeeccCCCcCCCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc----CchHHHHHHHHHHhhhHH
Q 016489 145 ARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQ 220 (388)
Q Consensus 145 a~~ip~gg~~~~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~s~~~~ 220 (388)
..+......+++.+.++++|+||||-.+.|..++|...||..+...|+.+...... +..|+.|++..+.. +.+
T Consensus 285 --~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~~~ 361 (414)
T TIGR03219 285 --LWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-ACR 361 (414)
T ss_pred --ceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-HHH
Confidence 00111112345677899999999999999999999999999999999988765422 46789999888774 355
Q ss_pred HHHHHHhhhHHHh
Q 016489 221 ELQRARNYRPAFE 233 (388)
Q Consensus 221 el~~~r~~~~~~~ 233 (388)
=.+.++.+..+++
T Consensus 362 ~~~~s~~~~~~~~ 374 (414)
T TIGR03219 362 VQRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHHhc
Confidence 4555666655543
No 48
>PRK06847 hypothetical protein; Provisional
Probab=98.89 E-value=1.7e-07 Score=93.56 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=56.2
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHhhhHHH
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 232 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~ 232 (388)
+...++++||||||..+.|..++|+..||..+...|+.+.+.-.....|+.|++..+.. ...-.+.++.+...+
T Consensus 278 ~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 278 PWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred CccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 45678999999999999999999999999999999998865321146788999877664 344455555554443
No 49
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.89 E-value=1.6e-07 Score=94.52 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=108.2
Q ss_pred eeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcc
Q 016489 10 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYG 89 (388)
Q Consensus 10 ~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~G 89 (388)
.-.+++|.+++|++||+|||.+|.+.+++ ++.. ......++++-+. ... +...++..+..+ +| .|
T Consensus 145 ~v~~~~g~~~~~~lvIgADG~~S~vR~~~----gi~~-~~~~~~~~~~v~~--~~~--~~~~~~~~~~~~-~~-----~g 209 (384)
T PRK08849 145 RVTLESGAEIEAKWVIGADGANSQVRQLA----GIGI-TAWDYRQHCMLIN--VET--EQPQQDITWQQF-TP-----SG 209 (384)
T ss_pred EEEECCCCEEEeeEEEEecCCCchhHHhc----CCCc-eeccCCCeEEEEE--EEc--CCCCCCEEEEEe-CC-----CC
Confidence 33467888999999999999999998864 5542 1122222332211 111 111223333222 11 12
Q ss_pred eeEEEEcCCCEEEEEEEEecC-CCC-CCCChHHHHHHHHcC-C-CcccccCCCeeeeecceeeccCCCcCCCccccCCEE
Q 016489 90 GSFLYHMNDRQIALGLVVALN-YHN-PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 165 (388)
Q Consensus 90 ggwiy~~~~~~vsVGlv~~l~-~~~-~~~~~~~~~~~~k~~-P-~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~g~l 165 (388)
-..++|..++..++-+..... ..+ ...++.+..+.+.+. | .+.++ +.... ...|..- ...++.+.++++
T Consensus 210 ~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--~~~~l~~-~~~~~~~~grv~ 282 (384)
T PRK08849 210 PRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEI----KVLQH--GSFPLTR-RHAQQYVKNNCV 282 (384)
T ss_pred CEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcE----Eeccc--eEeeccc-cccchhccCCEE
Confidence 223456655444432221111 001 123455555555432 2 11111 11111 1112211 124577889999
Q ss_pred EEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 166 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 166 LvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
|+||||-.+.|+.++|+..||..+...++.+.+.-.. ...|+.|++.-+.. ...-....+.+..+|+
T Consensus 283 LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 350 (384)
T PRK08849 283 LLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFS 350 (384)
T ss_pred EEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998888776532111 45789999876653 2333334444555554
No 50
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.86 E-value=1.3e-09 Score=96.68 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=47.8
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
+-.|..|+ +.||.++||++||..+++ .+++|+|+|+.||.|..+||+++|+...
T Consensus 50 pv~C~qCe----daPC~~vCP~~AI~~~~~-----~v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 50 PVVCHHCE----DAPCAEVCPVGAITRDDG-----AVQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CCcCCCCC----CcchhhhCchhheeecCC-----ceEEchhhccCcchhhhcCCcceEEEEe
Confidence 45677786 699999999999998754 7999999999999999999999998663
No 51
>PLN02985 squalene monooxygenase
Probab=98.86 E-value=3.2e-07 Score=96.23 Aligned_cols=175 Identities=14% Similarity=0.192 Sum_probs=95.4
Q ss_pred EEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEcC
Q 016489 18 ELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMN 97 (388)
Q Consensus 18 ~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~~ 97 (388)
+++|++||+|||++|.+.+++ +... .....|.++... .+.....++....++|. .+...+|+..
T Consensus 194 ~~~AdLVVgADG~~S~vR~~l----~~~~---~~~~s~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~l~ypi~ 257 (514)
T PLN02985 194 TALAPLTVVCDGCYSNLRRSL----NDNN---AEVLSYQVGYIS---KNCRLEEPEKLHLIMSK------PSFTMLYQIS 257 (514)
T ss_pred EEECCEEEECCCCchHHHHHh----ccCC---CcceeEeEEEEE---ccccCCCCCcceEEcCC------CceEEEEEeC
Confidence 467999999999999998865 4331 111234444321 11111123333334443 2345788888
Q ss_pred CCEEEEEEEEecCCCCCCCChHHHHHHHHc--CCC----cccccC----CC-eeeeecceeeccCCCcCCCccccCCEEE
Q 016489 98 DRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPA----IKPLLE----GG-TVVQYGARTLNEGGLQSIPYPVFPGGAI 166 (388)
Q Consensus 98 ~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~--~P~----i~~~l~----~~-~~~~yga~~ip~gg~~~~p~~~~~g~lL 166 (388)
++.+.+-+.+..+. .|..+..+..+.+++ .|. +++.+. .. ++. ..|..-. .......+|++|
T Consensus 258 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~-----~~p~~~l-~~~~~~~~~vvL 330 (514)
T PLN02985 258 STDVRCVFEVLPDN-IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIK-----VVPTKRM-SATLSDKKGVIV 330 (514)
T ss_pred CCeEEEEEEEeCCC-CCCcChhhHHHHHHhccccccCHHHHHHHHhhccccccee-----ecCcccc-cccccCCCCEEE
Confidence 77776665554331 122222221111111 122 222211 11 111 1222111 111334579999
Q ss_pred EccCccccCCCCccchHHHHHHHHHHHHHHHHh--hcc----CchHHHHHHHHHH
Q 016489 167 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGV--LHE----DSNMEIYWDTLQK 215 (388)
Q Consensus 167 vGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a--l~~----~~~l~~Y~~~~~~ 215 (388)
+||||-+..|++|+|+..|+.-+..-|+.+.+. +.. .+.|+.|++.-+.
T Consensus 331 iGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~ 385 (514)
T PLN02985 331 LGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKP 385 (514)
T ss_pred EecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988887542 111 3467788765554
No 52
>PRK06996 hypothetical protein; Provisional
Probab=98.85 E-value=3e-07 Score=93.08 Aligned_cols=77 Identities=13% Similarity=-0.035 Sum_probs=57.8
Q ss_pred CCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHHHHHhhhHHHh
Q 016489 156 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 233 (388)
Q Consensus 156 ~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~~~r~~~~~~~ 233 (388)
.++...++++||||||-.+.|+.++|+..||..+...|+.+.+.-.....|..|+++-+.. ...=++..+.+.++|.
T Consensus 285 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~~~ 361 (398)
T PRK06996 285 ARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRLFT 361 (398)
T ss_pred ccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 3467889999999999999999999999999999999998864211245689999776543 2332345555555554
No 53
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.85 E-value=1.1e-09 Score=98.04 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=47.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCC---CCc---eeEEEecCCCccCCcccccCCCCCeeE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE---KNQ---LKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---~~~---~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
+.+.|+.| +.|+++||++|+++...+ +|. +...||+.+|+.||-|+.+||++||..
T Consensus 53 ~~~~CIgC------~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 53 DRDKCIGC------GLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred cccCCcch------hHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcC
Confidence 55669998 689999999999997642 222 478999999999999999999999964
No 54
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.84 E-value=1.4e-09 Score=80.70 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=35.9
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKW 374 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~-~~I~w 374 (388)
.|++.|++| +.|..+||.++++..+.+++ +++.++.+.|++||.|..+||+ +||+.
T Consensus 3 Id~~~Ci~C------g~C~~~Cp~~~~~~i~~~~~-~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 3 IDEDKCIGC------GKCVRACPDGAIDAIEVDEG-KKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp E-TTT----------SCCCHHCCCCS-S-ECCTTT-TSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred ECcccccCh------hhHHhHcCccceeeEEecCC-eeEEeccccCcCcCcccccCCCccCCCC
Confidence 488999997 78999999977776543222 2567889999999999999996 99974
No 55
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.80 E-value=2.5e-07 Score=93.14 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=95.7
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCccee
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 91 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Ggg 91 (388)
..++|.+++|++||+|+|..+..++. .++ +...|+. ++++...+++...+. +-+-.+....|..
T Consensus 122 ~~~~g~~i~a~~VvDa~g~~~~~~~~----~~~---------Q~f~G~~--v~~~~~~f~~~~~~l-MD~r~~~~~~~~~ 185 (374)
T PF05834_consen 122 VLADGRTIRARVVVDARGPSSPKARP----LGL---------QHFYGWE--VETDEPVFDPDTATL-MDFRVPQSADGPS 185 (374)
T ss_pred EECCCCEEEeeEEEECCCcccccccc----ccc---------ceeEEEE--EeccCCCCCCCceEE-EEecccCCCCCce
Confidence 45777899999999999987774442 122 3466653 455555556665432 2222222113344
Q ss_pred EEE--EcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcc-cccCCCeeeeecceeecc--CCCcCCCccccCCEEE
Q 016489 92 FLY--HMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIK-PLLEGGTVVQYGARTLNE--GGLQSIPYPVFPGGAI 166 (388)
Q Consensus 92 wiy--~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~-~~l~~~~~~~yga~~ip~--gg~~~~p~~~~~g~lL 166 (388)
|+| |++++++-|......+ ++.++..++-+++.+. ++ .-+...++++--...||. ++. ++...++++.
T Consensus 186 F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~~--l~~~g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~v~~ 258 (374)
T PF05834_consen 186 FLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRRY--LERLGIDDYEILEEERGVIPMTTGGF---PPRFGQRVIR 258 (374)
T ss_pred EEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHHH--HHHcCCCceeEEEeecceeecccCCC---ccccCCCeee
Confidence 555 6778899998765543 3333333333333211 11 123344555544556888 332 3556788999
Q ss_pred EccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 167 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 167 vGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
+|+|||+++|.||-++..+++.+...|+++.
T Consensus 259 iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~ 289 (374)
T PF05834_consen 259 IGTAGGMVKPSTGYSFARIQRQADAIADALA 289 (374)
T ss_pred EEccccCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 9999999999998666666655554444443
No 56
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.78 E-value=2.1e-09 Score=87.88 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.2
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 379 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~g 379 (388)
+..|..|. +.+|+++||+++|..+++ +| .+.||.+.|++|+.|..+||+++|+|....|
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~G--~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-DG--IVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-TS---EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-CC--eEEechhhccCchhhhhhhccCcceeecccc
Confidence 46788887 689999999999998763 35 7999999999999999999999999987654
No 57
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.77 E-value=5.6e-07 Score=91.08 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=96.1
Q ss_pred CeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEe---cCCCC----CCCCcEEEEcCCCCCCCCc
Q 016489 16 GVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWE---IDEGK----HNPGEILHTLGWPLDQKTY 88 (388)
Q Consensus 16 g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~---~~~~~----~~~g~v~~~~G~p~~~~~~ 88 (388)
+.+++|++||+|||.+|.+.+++ +..+ .......+ +...+. ++... .+.+....++|. .
T Consensus 151 ~~~~~adlvIgADG~~S~vR~~~----~~~~--~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~ 216 (400)
T PRK06475 151 VETVSAAYLIACDGVWSMLRAKA----GFSK--ARFSGHIA--WRTTLAADALPASFLSAMPEHKAVSAWLGN------K 216 (400)
T ss_pred CcEEecCEEEECCCccHhHHhhc----CCCC--CCcCCceE--EEEEeehhhcchhhhhhcccCCceEEEEcC------C
Confidence 35799999999999999997754 4431 11111111 121111 11110 112333334431 2
Q ss_pred ceeEEEEcCCCEEEEEEEEecC-C-C---CCCCChHHHHHHHHcC-CCcccccCCCeeeeecceeeccCCCcCCCccccC
Q 016489 89 GGSFLYHMNDRQIALGLVVALN-Y-H---NPFLNPYEEFQKFKHH-PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 162 (388)
Q Consensus 89 Gggwiy~~~~~~vsVGlv~~l~-~-~---~~~~~~~~~~~~~k~~-P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~~ 162 (388)
+...+||..++....-+....+ . . ....+..++.+.+... |.+.++++...... ..|.......+....+
T Consensus 217 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~~~~~~~~g 292 (400)
T PRK06475 217 AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFEMADAQFVGPD 292 (400)
T ss_pred CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcccCCCcceecC
Confidence 4456788875543222211111 0 0 0111233333444322 44455554322111 1122111111222468
Q ss_pred CEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 016489 163 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKS 216 (388)
Q Consensus 163 g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s 216 (388)
+++||||||-.+.|..++|...||..+...|+.+... .-...|+.|++..+..
T Consensus 293 rvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r 345 (400)
T PRK06475 293 RTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER 345 (400)
T ss_pred CEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877421 0135688898777653
No 58
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.77 E-value=8.2e-07 Score=93.66 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=98.5
Q ss_pred EEEecEEEecccCCCccchhHHHhcCCCcccCCC-CceEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcceeEEEEc
Q 016489 18 ELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQ-HQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHM 96 (388)
Q Consensus 18 ~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~-~~~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gggwiy~~ 96 (388)
+++|++||+|||.+|.+.+.+ |+.. .... ...+.+. . ..++.+ . +...+.+++.+... ..+.|+++.
T Consensus 171 ~i~ad~vVgADG~~S~vR~~l----g~~~-~g~~~~~~~~~~-d--~~~~~~-~-~~~~~~~~~~~~~~--~~~~~~~~~ 238 (547)
T PRK08132 171 TLEADWVIACDGARSPLREML----GLEF-EGRTFEDRFLIA-D--VKMKAD-F-PTERWFWFDPPFHP--GQSVLLHRQ 238 (547)
T ss_pred EEEeCEEEECCCCCcHHHHHc----CCCC-CCccccceEEEE-E--EEecCC-C-CCeeeEEEeccCCC--CcEEEEEeC
Confidence 699999999999999987754 6652 1111 1122211 1 112211 1 22223333322211 124566666
Q ss_pred CCCEEEEEEEEecCC-CCCCCChHHHHHHHHcCCCcccccCC---CeeeeecceeeccCCCcCCCccccCCEEEEccCcc
Q 016489 97 NDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEG---GTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG 172 (388)
Q Consensus 97 ~~~~vsVGlv~~l~~-~~~~~~~~~~~~~~k~~P~i~~~l~~---~~~~~yga~~ip~gg~~~~p~~~~~g~lLvGDAAG 172 (388)
+++...+.+....+. .....++.++.+.+. +++.. -+...... .+. .....++...++++|+||||-
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~--~~~-~~~~a~~~~~gRV~L~GDAAH 309 (547)
T PRK08132 239 PDNVWRIDFQLGWDADPEAEKKPENVIPRVR------ALLGEDVPFELEWVSV--YTF-QCRRMDRFRHGRVLFAGDAAH 309 (547)
T ss_pred CCCeEEEEEecCCCCCchhhcCHHHHHHHHH------HHcCCCCCeeEEEEEe--eee-eeeeecccccccEEEEecccc
Confidence 666666655332211 111123333333332 11111 01111000 000 011134667899999999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH
Q 016489 173 FLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 215 (388)
Q Consensus 173 ~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 215 (388)
.+.|+.|+|+..||..+...|..+...+++ ...|+.|+++-+.
T Consensus 310 ~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p 355 (547)
T PRK08132 310 QVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREF 355 (547)
T ss_pred cCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999888777765 4568999987776
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.76 E-value=8.5e-07 Score=89.28 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=94.6
Q ss_pred eecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEE-EcCCCCCCCCccee
Q 016489 13 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILH-TLGWPLDQKTYGGS 91 (388)
Q Consensus 13 ~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~-~~G~p~~~~~~Ggg 91 (388)
+++|.+++|++||+|+|.+|.-... .+ .+..+|+. |++... ++++..+. .+-++ ...|+-
T Consensus 119 l~dg~~~~A~~VI~A~G~~s~~~~~----~~---------~Q~f~G~~--~r~~~p-~~~~~~~lMD~~~~---q~~g~~ 179 (370)
T TIGR01789 119 LAPGTRINARSVIDCRGFKPSAHLK----GG---------FQVFLGRE--MRLQEP-HGLENPIIMDATVD---QLAGYR 179 (370)
T ss_pred ECCCCEEEeeEEEECCCCCCCcccc----ce---------eeEEEEEE--EEEcCC-CCCCccEEEeeecc---CCCCce
Confidence 3778899999999999999753331 11 24466653 555544 66665332 22222 134678
Q ss_pred EEEE--cCCCEEEEEEEEecCCCC-CCCChHHHHHHHHcCCCcccccCCCeeeeecceeeccCC---CcCCCccccCCEE
Q 016489 92 FLYH--MNDRQIALGLVVALNYHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGG---LQSIPYPVFPGGA 165 (388)
Q Consensus 92 wiy~--~~~~~vsVGlv~~l~~~~-~~~~~~~~~~~~k~~P~i~~~l~~~~~~~yga~~ip~gg---~~~~p~~~~~g~l 165 (388)
|+|. ++++++=|.... +.. +.++..++-+++++... +.-+...+.++....++|... +.. +....++++
T Consensus 180 F~Y~lP~~~~~~lvE~T~---~s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~-~~~~~~~v~ 254 (370)
T TIGR01789 180 FVYVLPLGSHDLLIEDTY---YADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSA-YQDEVRIVA 254 (370)
T ss_pred EEEECcCCCCeEEEEEEe---ccCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCccc-ccccCCcee
Confidence 9994 567788775432 223 55555555444432110 012233445443444778622 221 112367799
Q ss_pred EEccCccccCCCCccchHHHHHHHHHHHHHH
Q 016489 166 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAG 196 (388)
Q Consensus 166 LvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 196 (388)
++|||||++.|.+|.|+..|++-+...|+.+
T Consensus 255 ~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~ 285 (370)
T TIGR01789 255 IAGLRAGLTHPTTGYSLPVAVENADALAAQP 285 (370)
T ss_pred eeecccccccccccccHHHHHHHHHHHHhcc
Confidence 9999999999999999999997655544433
No 60
>PRK07236 hypothetical protein; Provisional
Probab=98.73 E-value=7.1e-07 Score=89.85 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=49.7
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHh
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKS 216 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s 216 (388)
++...++++|+||||-.+.|+.++|...||..+..-|+.+...... ...|+.|++..+..
T Consensus 300 ~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~~R~~r 360 (386)
T PRK07236 300 PRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAV 360 (386)
T ss_pred cccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhHH
Confidence 5667899999999999999999999999999999999888654322 45688888777664
No 61
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.68 E-value=1.8e-08 Score=76.74 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=49.5
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.|++.|.+| +.|+.+||.+++.+.+++ +...+.+|.+.|+.||.|...||.+||.....
T Consensus 5 Id~~~C~~c------~~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 5 IDYDKCIGC------GICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred ECchhcCCC------ChheeccChhhEEecccc-CcceeEeccccCccchhhhhhCCcceEEEecc
Confidence 478889885 789999999999987542 23469999999999999999999999985533
No 62
>PRK06184 hypothetical protein; Provisional
Probab=98.67 E-value=1.8e-06 Score=90.10 Aligned_cols=60 Identities=13% Similarity=-0.000 Sum_probs=51.3
Q ss_pred CccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc--CchHHHHHHHHHHh
Q 016489 157 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKS 216 (388)
Q Consensus 157 p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~s 216 (388)
++...++++|+||||-.+.|+.++|+..||..+...|..+...+++ ...|+.|++..+..
T Consensus 276 ~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~ 337 (502)
T PRK06184 276 DRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPV 337 (502)
T ss_pred hhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999998888776665 45689999887763
No 63
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.66 E-value=5e-06 Score=89.42 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=107.5
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCC-CCCCCCcEEEEcCCCCCCCCcceeEEEE
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE-GKHNPGEILHTLGWPLDQKTYGGSFLYH 95 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~-~~~~~g~v~~~~G~p~~~~~~Gggwiy~ 95 (388)
.+++||+||+|||++|.+.+++ |+.- .........++..+..... ..+.....++. + ..|...++|
T Consensus 195 ~tv~A~~lVGaDGa~S~VR~~l----gi~~--~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~-~------~~g~~~~~P 261 (634)
T PRK08294 195 ETVRAKYVVGCDGARSRVRKAI----GREL--RGDSANHAWGVMDVLAVTDFPDIRLKCAIQS-A------SEGSILLIP 261 (634)
T ss_pred EEEEeCEEEECCCCchHHHHhc----CCCc--cCCcccceEEEEEEEEccCCCCcceEEEEec-C------CCceEEEEE
Confidence 5899999999999999998865 6542 1111112223333321111 00011111221 1 124445778
Q ss_pred cCCC-EEEEEEEEec-CC-C---CCCCChHHHHHHHHc--CCCcccccCCCeeeeec-----ceeeccCCCcCCCc----
Q 016489 96 MNDR-QIALGLVVAL-NY-H---NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYG-----ARTLNEGGLQSIPY---- 158 (388)
Q Consensus 96 ~~~~-~vsVGlv~~l-~~-~---~~~~~~~~~~~~~k~--~P~i~~~l~~~~~~~yg-----a~~ip~gg~~~~p~---- 158 (388)
..++ .+++-+.+.. +. . ....++.++.+.+.. .|..-+. + ++.-++ .+... .|...+.
T Consensus 262 ~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~-~--~v~w~s~y~i~~r~a~--~f~~~~~~~~~ 336 (634)
T PRK08294 262 REGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV-K--EVAWWSVYEVGQRLTD--RFDDVPAEEAG 336 (634)
T ss_pred CCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce-e--EEeEEecccccceehh--hcccccccccc
Confidence 7766 4554332211 11 1 123456666666643 2322111 0 111111 11111 1110010
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHHhhhHHH-HHHHHhhhHHHh
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQE-LQRARNYRPAFE 233 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~s~~~~e-l~~~r~~~~~~~ 233 (388)
...++++|+||||=...|..++|+..+|..+.-.|..+...+++ ...|+.|++.-+. +.++ +...+.+..+|.
T Consensus 337 ~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp--~a~~li~~~~~~~~l~~ 413 (634)
T PRK08294 337 TRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQA--IAQELIDFDREWSTMMA 413 (634)
T ss_pred cccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 02589999999999999999999999999999888877777765 4668999987776 3443 444555555554
No 64
>PRK06834 hypothetical protein; Provisional
Probab=98.65 E-value=7.1e-06 Score=85.59 Aligned_cols=60 Identities=13% Similarity=-0.014 Sum_probs=51.3
Q ss_pred CCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH
Q 016489 156 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 215 (388)
Q Consensus 156 ~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 215 (388)
.++...++++|+||||-.+.|+.++|++.+|..+.-.|..+...+++ ...|++|+++.+.
T Consensus 259 a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp 321 (488)
T PRK06834 259 AASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHP 321 (488)
T ss_pred cccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999887777776654 4568999988765
No 65
>PRK07190 hypothetical protein; Provisional
Probab=98.60 E-value=5.5e-06 Score=86.41 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=101.1
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCc-eEEEEEEEEEecCCCCCCCCcEEEEcCCCCCCCCcce
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQ-TYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG 90 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~-~~~lgvke~~~~~~~~~~~g~v~~~~G~p~~~~~~Gg 90 (388)
.+.+|.+++||+||+|||.+|.+.+++ |+.- ....++ .+.+. .-..+.+.... +.... +.. ..|.
T Consensus 145 ~~~~g~~v~a~~vVgADG~~S~vR~~l----gi~f-~g~~~~~~~~~~-d~~~~~~~~~~-~~~~~-~~~------~~g~ 210 (487)
T PRK07190 145 TLSNGERIQSRYVIGADGSRSFVRNHF----NVPF-EIIRPQIIWAVI-DGVIDTDFPKV-PEIIV-FQA------ETSD 210 (487)
T ss_pred EECCCcEEEeCEEEECCCCCHHHHHHc----CCCc-cccccceeEEEE-EEEEccCCCCC-cceEE-EEc------CCCC
Confidence 346677899999999999999998864 6652 112222 23322 11111110111 11111 211 1244
Q ss_pred eEEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHHHc--CCCcccccCCCeeeeecceeeccCCCcCCCccc-cCCEEEE
Q 016489 91 SFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-FPGGAII 167 (388)
Q Consensus 91 gwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~--~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~-~~g~lLv 167 (388)
.+++|.+++...+-+ .++ .+..+..+..+.++. .|.- +. -+.+.+-. ..+..--. ..+.. .++++|+
T Consensus 211 ~~~~p~~~~~~r~~~--~~~--~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~s-~~~~~~r~-a~~~r~~gRV~La 280 (487)
T PRK07190 211 VAWIPREGEIDRFYV--RMD--TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWFS-QFSVKESV-AEHFFIQDRIFLA 280 (487)
T ss_pred EEEEECCCCEEEEEE--EcC--CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEEE-EeeeCcEe-hhhcCcCCcEEEE
Confidence 567787665433211 222 223344444454532 1210 11 11111111 11111111 23553 6899999
Q ss_pred ccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH
Q 016489 168 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 215 (388)
Q Consensus 168 GDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 215 (388)
||||=...|+.++|++.+|..+.-.|..+...+++ ...|++|+++-+.
T Consensus 281 GDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p 331 (487)
T PRK07190 281 GDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKP 331 (487)
T ss_pred ecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877765 3568999987765
No 66
>PRK06126 hypothetical protein; Provisional
Probab=98.55 E-value=6e-06 Score=87.03 Aligned_cols=60 Identities=15% Similarity=-0.018 Sum_probs=52.1
Q ss_pred CCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc---CchHHHHHHHHHH
Q 016489 156 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 215 (388)
Q Consensus 156 ~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 215 (388)
.++...++++|+||||-.+.|+.++|+..||..+...|+.+...++. ...|+.|++.-+.
T Consensus 297 a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p 359 (545)
T PRK06126 297 ADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred hhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhH
Confidence 34667899999999999999999999999999999999998777654 4678999987765
No 67
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=98.54 E-value=5.2e-08 Score=77.03 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=48.1
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEE-EecCCCccCCcccccCCCCCeeEECc
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~-i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
|.|.++|++| +.|.-+||-+++...++ + ... |||+.|-+||-|..+||+.||+....
T Consensus 31 v~d~~kCi~C------~~C~~yCPe~~i~~~~~--~--~~~~idYdyCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 31 VVDEDKCINC------KLCWLYCPEPAILEEEG--G--YKVRIDYDYCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred EEcccccccC------ceeEEECCchheeeccC--C--ccceeEcccccCceechhhCChhheEeEee
Confidence 5688999997 78999999999887665 2 222 99999999999999999999987643
No 68
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.53 E-value=5.9e-08 Score=82.24 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=47.5
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.|.+.|+.| +.|+.+||.+++++..+. . .+.++...|+.||.|..+||++||+++.
T Consensus 39 i~~~~Ci~C------~~C~~~CP~~ai~~~~~~-~--~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 39 YDVDKCVGC------RMCVTVCPAGVFVYLPEI-R--KVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred ECcccCcCc------ccHHHHCCccceEccccc-c--ceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 477899987 689999999999876531 2 5789999999999999999999998763
No 69
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.45 E-value=7.7e-08 Score=77.24 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=46.8
Q ss_pred EecCCCCCcccCCCCCCCccccccCCceEEEecC-----------CCCc----eeEEEecCCCccCCcccccCCCCCeeE
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPD-----------EKNQ----LKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~-----------~~~~----~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
...|++.|+.| +.|+.+||.+++++... .++. ..+.+|.+.|+.||.|..+||++||+.
T Consensus 16 ~~i~~~~Ci~C------~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 16 TSIDQEKCIGC------GRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred EEECHhHCCCc------chHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEec
Confidence 34588999987 78999999999987631 0011 124689999999999999999999975
Q ss_pred E
Q 016489 375 T 375 (388)
Q Consensus 375 ~ 375 (388)
.
T Consensus 90 ~ 90 (91)
T TIGR02936 90 A 90 (91)
T ss_pred C
Confidence 3
No 70
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.44 E-value=2.3e-07 Score=90.19 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=49.0
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
..+..|..|. ..+|+.+||.+++...++ +| .+.||.++|+.|+.|+.+||++||.+....
T Consensus 126 y~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-dG--iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~ 185 (321)
T TIGR03478 126 YLPRICNHCT----NPACLAACPTGAIYKREE-DG--IVLVDQERCKGYRYCVEACPYKKVYFNPQS 185 (321)
T ss_pred EecccCCCCC----CccchhhCCcCcEEEecC-CC--eEEECHHHCcchHHHHHhCCCCCcEecCCC
Confidence 4578998885 347999999999876543 34 688999999999999999999999876443
No 71
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.44 E-value=1.8e-05 Score=85.08 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=100.5
Q ss_pred eeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCC-CCcEEEEcCCCCCCC
Q 016489 8 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHN-PGEILHTLGWPLDQK 86 (388)
Q Consensus 8 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~-~g~v~~~~G~p~~~~ 86 (388)
.+...+++|.++++++||+|||++|.+.+++ ++..+ .....+. .+.-+....+.... .+ ...+.|.
T Consensus 224 ~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l---~g~~~---~~~sG~~-~~rgi~~~~p~~~~~~~-~~~~~G~----- 290 (668)
T PLN02927 224 KVTVVLENGQRYEGDLLVGADGIWSKVRNNL---FGRSE---ATYSGYT-CYTGIADFIPADIESVG-YRVFLGH----- 290 (668)
T ss_pred EEEEEECCCCEEEcCEEEECCCCCcHHHHHh---cCCCC---CcccceE-EEEEEcCCCcccccccc-eEEEEcC-----
Confidence 3444467888899999999999999998875 45431 1111111 11111222221111 11 1222231
Q ss_pred CcceeEEEEcCCCEEEEEEEEecCCC---CCCCChHHHHHHHHc-CCCcccccCCC---eeeeecceeeccCCCcCCCcc
Q 016489 87 TYGGSFLYHMNDRQIALGLVVALNYH---NPFLNPYEEFQKFKH-HPAIKPLLEGG---TVVQYGARTLNEGGLQSIPYP 159 (388)
Q Consensus 87 ~~Gggwiy~~~~~~vsVGlv~~l~~~---~~~~~~~~~~~~~k~-~P~i~~~l~~~---~~~~yga~~ip~gg~~~~p~~ 159 (388)
......++..++.+.+-........ .+.....++.+.|.. .|.+.++++.. ....+.... ....++.
T Consensus 291 -~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd-----~~p~~~W 364 (668)
T PLN02927 291 -KQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYD-----RSPGFTW 364 (668)
T ss_pred -CeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEe-----ccCCCcc
Confidence 1112233444444432221111110 111122333344432 24444554321 111111111 1112345
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc----------CchHHHHHHHHHHh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTLQKS 216 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~----------~~~l~~Y~~~~~~s 216 (388)
+.++++|+||||=.+-|..++|...||..+..-|+.+.++++. ...|+.|++..+..
T Consensus 365 ~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~r 431 (668)
T PLN02927 365 GKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLR 431 (668)
T ss_pred ccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999989888776531 25688998776653
No 72
>CHL00065 psaC photosystem I subunit VII
Probab=98.43 E-value=6.3e-08 Score=76.30 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=46.1
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCC---CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDE---KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+++.+.|+.| +.|+.+||.+++++.+.+ .+.....++.+.|+.|+.|..+||++||+|+
T Consensus 5 ~~~~~~Ci~C------g~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 66 (81)
T CHL00065 5 VKIYDTCIGC------TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred cCccccCCCh------hHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEE
Confidence 3467899987 689999999998875431 1111235677899999999999999999987
No 73
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.42 E-value=1.2e-07 Score=68.06 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=25.1
Q ss_pred ecCCCCCcccCCCCCCCccccccCC-ceEEEecCCCCceeEEEecCCCccCCcccccCC
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa-~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp 368 (388)
+.|.+.|++| +.|+++||+ .+...... ...+.++.++|++||.|..+||
T Consensus 3 ~id~~~C~~C------~~C~~~CP~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGC------GRCVKVCPADNAIAIDDG---EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------------TTGGG-TT-----EEE----SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcCC------cChHHHccchhHHHhhcc---CCCeEeCcccccccChhhhhCc
Confidence 3588999997 799999999 33333332 1268889999999999999998
No 74
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.40 E-value=2.4e-07 Score=85.00 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
+..|..|. +.||+.+||+++....+. +| -+.+|.+.||+||-|+.+||++|.......
T Consensus 66 ~~~C~HC~----~ppCv~vCPtgA~~k~~~-dG--iV~vd~d~CIGC~yCi~ACPyga~~~~~~~ 123 (203)
T COG0437 66 SISCMHCE----DPPCVKVCPTGALFKREE-DG--IVLVDKDLCIGCGYCIAACPYGAPQFNPDK 123 (203)
T ss_pred cccccCCC----CCcccccCCCcceEEecC-CC--EEEecCCcccCchHHHhhCCCCCceeCccc
Confidence 35788887 689999999999877652 35 799999999999999999999998766533
No 75
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.39 E-value=7.6e-08 Score=69.82 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCcccCCCCCCCccccccCCceEEEecCCCCce----eEEEecCCCccCCcccccCCCCCe
Q 016489 316 IPELVNLPEYAGPESRYCPARVYEYVPDEKNQL----KLQINAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 316 ~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~----~~~i~~~~C~~Cg~C~~~cp~~~I 372 (388)
.|++| +.|+++||.+++++...+.... ....+.+.|++||.|..+||++||
T Consensus 1 kCi~C------g~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGC------GRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TT------THHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCc------chHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 36665 7899999999999977532110 011134589999999999999998
No 76
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.38 E-value=2.8e-07 Score=76.06 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=49.5
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
+....|.+.|++| +.|+.+||.+++++.+... +.....++.+.|+.|+.|...||++||++.-
T Consensus 9 ~~v~id~~~Ci~C------~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 9 TPVWVDESRCKAC------DICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred CCeEECcccccCC------cchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEec
Confidence 4445588999987 7899999999988764311 1123578899999999999999999998753
No 77
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.38 E-value=1.6e-07 Score=80.96 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCCCCcccCCCCCCC-----ccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAG-----PESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~-----~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
|++.|+.| + .|+++||.+++.+.++ ..+...++.+.|+.|+.|...||++||++.
T Consensus 6 ~~~~C~gC------~~~~~~~Cv~~CP~~ai~~~~~--~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 6 YPTKCDGC------KAGEKTACVYICPNDLMHLDTE--IMKAYNIEPDMCWECYSCVKACPQGAIDVR 65 (132)
T ss_pred ccccccCc------cCCchhcCHhhcCccceEecCC--CceeeecCchhCccHHHHHHhCCcCceEEE
Confidence 77899987 6 8999999999987643 212457899999999999999999999864
No 78
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.37 E-value=1.7e-07 Score=73.60 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=48.8
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEE-CcCC
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWT-VPEG 379 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~-~p~g 379 (388)
|++ ++.+.|+.| +.|+.+||.+++++.+.++ +...+.++.+.|+.|+.|...||+++|+++ ++.+
T Consensus 2 ~~~-~~~~~Ci~C------~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~ 70 (80)
T TIGR03048 2 HSV-KIYDTCIGC------TQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGA 70 (80)
T ss_pred cce-ecCCcCcCc------chHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEecCc
Confidence 444 467889987 6899999999988764211 111245677999999999999999999987 4443
No 79
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.36 E-value=5.2e-08 Score=70.10 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=32.4
Q ss_pred CccccccCCceEEEecCC--CCceeEEEecCCCccCCcccccCCCCC
Q 016489 327 GPESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~--~~~~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.|+.+||.+++.+.+.. .+...+.+|.+.|++||.|..+||++|
T Consensus 6 ~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 6 GACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp -HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 789999999999987642 234578999999999999999999986
No 80
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.35 E-value=3.9e-07 Score=75.50 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=47.6
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..|.+.|+.| +.|+.+||.+++.+.++ + .+.+|.+.|..|+.|...||++||++.
T Consensus 47 ~i~~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 47 VVDESKCVKC------YICWKFCPEPAIYIKED--G--YVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred EECcccCccc------cchhhhCCHhheEecCC--C--cEEeCchhCcCcchhhhhcCcCcEEec
Confidence 4588999987 68999999999887543 3 578999999999999999999999886
No 81
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.34 E-value=4.4e-07 Score=91.68 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=49.8
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
...+..|..|. ..+|+.+||.+++...++ +| .+.||.+.|+.|+.|+.+||+++|.+..-
T Consensus 177 ~y~p~~C~HC~----nP~CV~ACPtGAI~k~ee-dG--iV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 177 MYLPRLCEHCL----NPACVASCPSGAIYKREE-DG--IVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred EECCCcCcCCC----cccchhhCccCCeEEecC-CC--eEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 44688999885 358999999999986543 24 67899999999999999999999987643
No 82
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.34 E-value=2.5e-07 Score=76.64 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=46.6
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|.+.|+.| +.|+.+||.+++..+++ + ...++.+.|+.|+.|..+||++||++.
T Consensus 48 ~d~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 48 FNRDKCVRC------YLCYIYCPEPAIYLDEE--G--YPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EChhHCcCh------hhHHhhCCHhhEEecCC--C--cEEECchhCCCcCchhhhcCcCcEEEe
Confidence 478899987 68999999999887643 2 477899999999999999999999875
No 83
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.34 E-value=4.7e-07 Score=87.64 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCeEe-cCCCCCcccCCCCCCCccccccCC-ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 307 AHLRL-RDPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 307 ~Hl~v-~d~~~c~~~~~~~~~~~c~~~CPa-~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.|+.+ ..+..|..|. ..+|+.+||+ ++|...++ | .+.+|.+.|++|+.|..+||+++|+|...
T Consensus 82 ~~~~~~~~~~~C~hC~----~p~Cv~aCP~~gA~~~~~~--G--~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 82 DGLEWLIRKDGCMHCR----EPGCLKACPAPGAIIQYQN--G--IVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCceEEECCccCCCCC----CccccCCCCcCCeEEEcCC--C--cEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 45442 2567799986 3579999998 78866543 4 68999999999999999999999998653
No 84
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.32 E-value=2.6e-07 Score=72.67 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=45.9
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCc---eeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ---LKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~---~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.+.+.|+.| +.|+.+||.+++++.+.++.. ....++.++|+.|+.|..+||++||++..-
T Consensus 6 ~~~~~C~~C------~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 6 KIYDTCIGC------TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred EcCCcCcCh------hHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 367899987 689999999999876421111 112357789999999999999999998743
No 85
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.31 E-value=3.1e-07 Score=83.49 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=48.7
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCC-CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|.+.|+.| +.|+.+||.+++.+..+. .+...+.++...|+.||.|..+||++||++.
T Consensus 35 ~d~~~Ci~C------g~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 35 LMPSQCIAC------GACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred eChhhCcch------hHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEec
Confidence 378899987 789999999999876542 2334688999999999999999999999875
No 86
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.30 E-value=4.4e-07 Score=81.22 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=48.6
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.....|++.|+.| +.|+++||.+++....+ + ...++.++|+.||.|..+||++||+++
T Consensus 106 ~~~~id~~~Ci~C------g~C~~aCp~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGC------TKCIQACPVDAIVGAAK--A--MHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCCh------hHHHHhCCccceEecCC--C--ceEeecccccChhHHHHhcCcCceEee
Confidence 3445688999987 68999999999876543 2 467899999999999999999999886
No 87
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.30 E-value=4.7e-06 Score=83.43 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=44.3
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHH
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYW 210 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~ 210 (388)
++...+++|+||||=-+=|+-|+|..-||.-+..-|+.+.++.+. +..++.|+
T Consensus 284 ~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s 337 (420)
T KOG2614|consen 284 KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYS 337 (420)
T ss_pred ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhcccccee
Confidence 556669999999999999999999999999999999999998874 22234444
No 88
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.30 E-value=4.8e-07 Score=82.09 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=48.1
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCC-CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
|.+.|+.| +.|+.+||.+++.+..+. .+...+.+|.+.|+.||.|..+||++||+++
T Consensus 36 d~~~C~~C------~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 36 NPQQCIGC------AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred ChhhCcCh------hHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEcc
Confidence 78899987 689999999999886542 2334568999999999999999999999875
No 89
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.30 E-value=7.6e-07 Score=79.58 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=44.7
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCC--CCc---eeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~---~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.+.|+.| +.|+.+||.+++.+...+ ++. ....+|...|+.||.|..+||++||+..
T Consensus 56 ~~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 56 GEERCIAC------KLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVET 117 (164)
T ss_pred CCccCCcc------cChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceec
Confidence 34589987 689999999998765421 121 2466899999999999999999999753
No 90
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.28 E-value=5.5e-07 Score=70.18 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=46.6
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.+.+.|+.| +.|+.+||.+++.+.++ + ...++...|..|+.|..+||++||+..
T Consensus 21 ~i~~~~C~~C------~~C~~~Cp~~ai~~~~~--~--~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 21 VVDKEKCIKC------KNCWLYCPEGAIQEDEG--G--FVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEcCCcCcCh------hHHHhhcCccceEecCC--C--cEEecCccCcCccchhhhCCccccEec
Confidence 3478899887 68999999999887543 2 578899999999999999999999765
No 91
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.27 E-value=3.4e-07 Score=79.13 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=45.3
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|.+.|+.| +.|+.+||.+++...++ + .+.|+.+.|+.||.|+.+||++||.+.
T Consensus 56 ~d~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 56 HNNEICINC------FNCWVYCPDAAILSRDK--K--LKGVDYSHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred EehhHCcCh------hhHHHhCCHhheEecCC--c--eEEeCcCcCcChhHHHHHCCcCceEEE
Confidence 478999987 68999999999876443 2 567899999999999999999997654
No 92
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.26 E-value=9.8e-07 Score=93.53 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=48.2
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+.+.|..|..-.-|+.|+.+||.+++....+ + ..+.||.++|+.|+.|..+||++||++.
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~--~-~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP--G-RRYHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC--C-ceEEEecccCcChhHHHhhcCcCceEec
Confidence 45778887732223588999999999887543 2 1488999999999999999999999864
No 93
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.24 E-value=5.4e-07 Score=70.77 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=46.7
Q ss_pred CCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 307 AHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 307 ~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+|.. ...+.|+.| +.|+.+||.+++...+.+. +.....++.+.|+.|+.|...||+++|.++
T Consensus 2 ~~~~-~~~~~Ci~C------~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 2 SHAV-KIYDTCIGC------TQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred Cccc-cccccCCCc------chHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEE
Confidence 3544 356899887 6899999999988754211 111235678999999999999999999976
No 94
>PRK06273 ferredoxin; Provisional
Probab=98.21 E-value=4.8e-07 Score=80.93 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=46.0
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCC-----C---ceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-----N---QLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~-----~---~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.+.+.|..| +.|+.+||.+++.+...+. + ...+.+|.++|+.|+.|..+||++||..
T Consensus 46 id~~~CigC------g~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 46 VFEELCIGC------GGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ECchhCcCh------hHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 377899987 6899999999998874311 0 1247899999999999999999999854
No 95
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.21 E-value=3.8e-07 Score=88.74 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=48.7
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..+.|.+.|+.| +.|+.+||.+++.+.....+...+.++..+|+.||.|..+||++||.+.
T Consensus 42 ~~~~~~~~C~~C------~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 42 ELLFKENRCLGC------GKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred eEEEccccCCCC------chhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 345688999997 7899999999987432111223689999999999999999999999774
No 96
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.21 E-value=8.7e-07 Score=89.44 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=49.9
Q ss_pred CCeEecCCCCCcccCCCCCCCccccccCC-----ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE-ECcC
Q 016489 307 AHLRLRDPKIPELVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW-TVPE 378 (388)
Q Consensus 307 ~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa-----~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w-~~p~ 378 (388)
-||-|.|.+.|.--.+ +--|+++||. .+++++++ +| +..|..+-|+.||.|+.+||++||+- +.|+
T Consensus 3 ~riAvvd~D~C~PkkC---~~eC~~yCP~vrtg~~~I~i~~~-~g--kpvIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 3 MRIAVVDYDRCQPKKC---GYECIKYCPVVRTGKETIEIDED-TG--KPVISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred ceEEEeehhccCcccc---chhhhhcCCCccCCCeeEEecCC-CC--CceeEhhhhccchhhhccCCcceEEEecCch
Confidence 4666778777753211 2579999996 57787664 45 67999999999999999999999984 3553
No 97
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.17 E-value=1.1e-06 Score=80.10 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=44.1
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEec--C----CCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVP--D----EKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~--~----~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.+.|+.| +.|+.+||.+++.+.. + .+....+.+|...|+.||.|..+||++||+++
T Consensus 60 ~~~kCi~C------g~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 60 EFDKCIAC------EVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred CcccCcCc------CChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 66889987 6899999999764321 0 00112578999999999999999999999875
No 98
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.16 E-value=3e-06 Score=79.63 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=47.2
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.++..|..|. ..+|+.+||.+++...++ +| .+.+|.+.|+.|+.|..+||++||.+.
T Consensus 89 ~~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~g--~v~id~~~C~~C~~C~~aCP~~A~~~~ 145 (225)
T TIGR03149 89 FFRKSCQHCD----NAPCVAVCPTGASFKDEE-TG--IVDVHKDLCVGCQYCIAACPYRVRFIH 145 (225)
T ss_pred ECchhccCCc----CcChHhhCCCCcEEEeCC-CC--eEEechhhCCcchHHHHhCCCCCcEec
Confidence 3678898885 247999999999887543 24 688999999999999999999999775
No 99
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.13 E-value=1.3e-06 Score=83.69 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=45.9
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCce-EEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARV-YEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~-y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
++...|++.|++| +.|+++||.++ ++....++ .+..++...|+.||.|..+||++||+++
T Consensus 194 ~i~~~~~~~C~~C------~~C~~vCP~~~vl~~~~~~~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 194 KIAASDREKCTNC------MDCFNVCPEPQVLRMPLKKG--GSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEEeeccccCeEc------CCccCcCCCCceeeccccCC--CceEeccccccchhHHHHhCCccccccc
Confidence 3444468899987 68999999985 44332211 2567899999999999999999999875
No 100
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.12 E-value=1.3e-06 Score=80.15 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=47.5
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..+.|.+.|+.| +.|+++||.+++....+ + ...++.+.|+.||.|..+||++||++.
T Consensus 108 ~~~id~~~Ci~C------g~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIGC------TKCIQACPVDAIVGATK--A--MHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCCC------ChhhhhCCHhhhecccC--C--ceeecCCcCCchHHHHHHcCcCceEEe
Confidence 345588999997 68999999999876432 2 457889999999999999999999986
No 101
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=98.11 E-value=7.2e-07 Score=78.06 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=44.6
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecC--CCCce---eEEEecCCCccCCcccccCCCCCee
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPD--EKNQL---KLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~--~~~~~---~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.+.|+.| +.|+++||+.++.++.+ .+|.+ +..||.-.|+-||-|..+||++||.
T Consensus 110 eerCIAC------klCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 110 EERCIAC------KLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred chhhhhH------HHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 5789987 68999999999887543 24532 5779999999999999999999985
No 102
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.09 E-value=6.7e-06 Score=91.82 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=41.8
Q ss_pred CCCCCcccCCCCCCCccccccCCceE-EEec-C-CCCceeEEEecCC-CccCCcccccCCCCCeeE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVY-EYVP-D-EKNQLKLQINAQN-CLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y-~~~~-~-~~~~~~~~i~~~~-C~~Cg~C~~~cp~~~I~w 374 (388)
+.+.|.+|+. .|+.|+.+||.+++ .+.. + +++ ...|+.+. |++||.|...||++|...
T Consensus 879 ~~~rC~~c~~--~Cg~Cv~vCP~~Aii~i~~~~~~~~--~~~i~~d~~C~~CG~C~~vCP~~a~~~ 940 (1012)
T TIGR03315 879 ESQRCLECSY--VCEKCVDVCPNRANIVIYVPGFRDQ--FQIVHLDGMCNECGNCATFCPYDGAPY 940 (1012)
T ss_pred ccccccCCCC--CCCChhhhCChhhhhccccccccCC--ceeeecCccccccchHHHhCCCCcccc
Confidence 5689999875 78999999999974 3321 1 112 23344445 999999999999998754
No 103
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.09 E-value=1.7e-06 Score=69.74 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.+.+.|++| +.|+.+||.+++++..+......+.++.+.|+.|+.|..+||.+||++..
T Consensus 26 ~~~~~Ci~C------g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~ 84 (99)
T COG1145 26 IDAEKCIGC------GLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAE 84 (99)
T ss_pred eCccccCCC------CCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhh
Confidence 467889996 89999999999988432100237999999999999999999999987653
No 104
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.08 E-value=1.9e-06 Score=72.98 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=44.0
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCC--CCc---eeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~---~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+.|+.| +.|+.+||.+++.+.... ++. ..+.++.+.|+.||.|..+||+++|+++
T Consensus 42 ~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIGC------TLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcCc------chhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 4789887 689999999988765321 111 2467899999999999999999999754
No 105
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.08 E-value=2.1e-06 Score=81.58 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=47.5
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.+..|..|. ..+|+.+||.+++...++ | .+.+|.+.|++|+.|..+||++||.+...
T Consensus 96 ~~~~C~~C~----~p~Cv~~CP~~Ai~~~~~--G--~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 96 LPRLCNHCD----NPPCVPVCPVQATFQRED--G--IVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred cchhcCCcC----CccCccccCCCCEEECCC--C--CEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 467898885 247999999999876543 4 68999999999999999999999998643
No 106
>PRK08764 ferredoxin; Provisional
Probab=98.06 E-value=2.5e-06 Score=73.87 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=45.8
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
++.+.+.+.|+.| +.|+++||.++++.... + ...++.+.|+.||.|..+||++||+++
T Consensus 78 ~~~~~~~~~Ci~C------~~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 78 QVAWIVEADCIGC------TKCIQACPVDAIVGGAK--H--MHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred eeEEECcccCcCc------chHHHhCChhhcCccCC--C--ceeecCCcCcCccchhhhcCccceEeC
Confidence 3444355789886 68999999999876432 2 456888999999999999999999863
No 107
>PRK06991 ferredoxin; Provisional
Probab=98.06 E-value=2.4e-06 Score=82.19 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.|.+.|+.| +.|+.+||.+++.+..+ + ...++...|+.||.|..+||+++|++.
T Consensus 81 ~id~~~CigC------g~Cv~aCP~~AI~~~~~--~--~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 81 VIDEQLCIGC------TLCMQACPVDAIVGAPK--Q--MHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EEccccCCCC------cHHHHhCCHhheecccc--c--ceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 4578999997 78999999999877543 2 467889999999999999999999865
No 108
>PRK07118 ferredoxin; Validated
Probab=98.04 E-value=3.1e-06 Score=81.99 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
...|+.| +.|+.+||.+++.+.++ ..+||++.|+.||.|..+||+++|+|...+
T Consensus 212 ~~~Ci~C------g~Cv~~CP~~AI~~~~~-----~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 212 EVGCIGC------GKCVKACPAGAITMENN-----LAVIDQEKCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred ccccccc------hHHHhhCCcCcEEEeCC-----cEEEcCCcCCCHHHHHHhCCccccEeeccc
Confidence 5667776 78999999999999765 688999999999999999999999987443
No 109
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.04 E-value=2.5e-06 Score=70.12 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=43.6
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
+.+.|..| +.|+.+||.+++.+... +...+.++...|..||.|..+||+++|.
T Consensus 32 ~~~~C~~C------~~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~ 84 (101)
T TIGR00402 32 FSAVCTRC------GECASACENNILQLGQQ--GQPTVEFDNAECDFCGKCAEACPTNAFH 84 (101)
T ss_pred CcCcCcCh------hHHHHHcCcccceeccC--CceeeEecCccCcCccChhhHCCccccC
Confidence 45678886 68999999999887543 3235789999999999999999999985
No 110
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.03 E-value=2.9e-06 Score=76.95 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=45.1
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...|..|. +.+|+.+||.+++...++ .+.+|.+.|++|+.|..+||++||++.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~~-----~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDKG-----FVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccCC-----eEEeChhhCCCcchhhhhCCccCeEee
Confidence 46788875 458999999999877433 688999999999999999999999875
No 111
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.01 E-value=4.1e-06 Score=74.74 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=42.4
Q ss_pred CCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 325 YAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 325 ~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
+++.|+.+||.+++++..+..+.....||.+.|+.||.|..+||++||+.+..
T Consensus 108 ~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 108 ECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYL 160 (163)
T ss_pred CcCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEeccc
Confidence 35789999999999986542232246889999999999999999999987543
No 112
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.01 E-value=2.8e-06 Score=86.76 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=45.5
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.|++.|+.| +.|+.+||.+++...+. ...++.+.|..|+.|...||++||+.
T Consensus 7 id~~~Ci~C------~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 7 IDPEICIRC------NTCEETCPIDAITHDDR-----NYVVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eCcccCcCc------cchhhhCCcccEeccCC-----ceEeCcccCcCHHHHHhhcCccccee
Confidence 488999997 68999999999876543 57789999999999999999999983
No 113
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.00 E-value=3e-06 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEecCCCccCCcccccCCCCCee
Q 016489 350 LQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
++||.+.|++||.|...||++||+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 478999999999999999999985
No 114
>PRK09898 hypothetical protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=75.00 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
++..|..|. ..+|+.+||.+++...++ .+ .+.+|.++|++|+.|..+||+++|...
T Consensus 119 ~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~g--~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCK----EPQCMNVCPIGAITWQQK-EG--CITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCcc----CcchhhhCCcceEEeecc-CC--eEEeccccCCCcCcccccCCCCCCEec
Confidence 567898884 358999999999887643 23 688999999999999999999998765
No 115
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=97.98 E-value=1.8e-06 Score=85.88 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=39.8
Q ss_pred CCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 326 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 326 ~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
++.|+..||.+++++.++. ...++.+|.++|++||.|..+||++||+
T Consensus 186 ~~~Cv~~CP~~Ai~~~~~~-~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 186 IPSVVAACPTGALKPRRDG-KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred CCceEeeCchhhceecccC-CCCceeeccccCCcCCchHHhCchhhcc
Confidence 5799999999999985431 1237999999999999999999999974
No 116
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.98 E-value=3.9e-06 Score=81.05 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=44.3
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEE--ecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~--~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+++..|++.|.+| +.|+++||.++... ..+++ ....++...|+.||.|+.+||++||++.
T Consensus 201 ~i~~~d~~~C~~C------~~C~~~CP~~~i~~~~~~~~~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 201 RVKAHDRQKCTRC------MDCFHVCPEPQVLRPPLKGKQ--SPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred ccccCCcccCccc------CCcCCcCCCcceecccccCCC--ccceeCcccCcChhHHHhhcCccceeec
Confidence 3443578999987 68999999986422 11111 1235888999999999999999999865
No 117
>PRK13409 putative ATPase RIL; Provisional
Probab=97.96 E-value=5e-06 Score=88.65 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=48.0
Q ss_pred CeEecCCCCCc--ccCCCCCCCccccccCC-----ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee-EECcC
Q 016489 308 HLRLRDPKIPE--LVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK-WTVPE 378 (388)
Q Consensus 308 Hl~v~d~~~c~--~~~~~~~~~~c~~~CPa-----~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~-w~~p~ 378 (388)
+|-|.|.+.|. +|+ .-|.++||. .|+++.++ ++ +..|..+-|+.||-|+.+||++||+ -+.|+
T Consensus 3 ~~~~~~~~~c~~~~c~-----~~c~~~cp~~~~~~~~~~~~~~-~~--~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 3 RIAVVDYDRCQPKKCN-----YECIKYCPVVRTGEETIEIDED-DG--KPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred eEEEeeccccCcchhh-----hhHHhhCCCcccCCeEEEEcCC-CC--CceeeHhhccccccccccCCcceEEEeeCch
Confidence 35566666664 343 479999996 57888554 22 7999999999999999999999998 44664
No 118
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.92 E-value=4.8e-06 Score=79.20 Aligned_cols=56 Identities=25% Similarity=0.352 Sum_probs=48.0
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.|++.|..| |.|.++|+-+|+.+.++ + ++.+|...|-.||+|.+.||..||+.+.-
T Consensus 66 i~~e~C~~C------G~C~~vC~f~Ai~~~~~--~--~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 66 IDPEKCIRC------GKCAEVCRFGAIVVLPG--G--KPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred cChhhcccc------CcHHHhCCCCeEEEcCC--C--ceecCcccccCcccceeeCCCcccccccc
Confidence 467789886 89999999999987554 3 79999999999999999999999986543
No 119
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.92 E-value=7.5e-06 Score=72.86 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=47.3
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
+..|..|. ..+|+++||.+++....+ ++ .+.++.+.|+.|+.|..+||+++|.|....
T Consensus 61 ~~~C~~C~----~~~C~~~CP~~ai~~~~~-~~--~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~ 118 (161)
T TIGR02951 61 SISCNHCA----DPACVKNCPTGAMYKREE-DG--LVLVDQDKCIGCRYCVWACPYGAPQYDPQQ 118 (161)
T ss_pred CccCCCcC----CcchHHhCCCCCEEeecC-CC--cEEECHHhCCCchHHHhhCCCCCcEEcCCC
Confidence 57788874 348999999999876522 23 688999999999999999999999987543
No 120
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.92 E-value=4.3e-06 Score=79.03 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=44.4
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
|.+.|..| +.|+.+||.+++.+.++ ...+|.+.|..|+.|...||++||+
T Consensus 146 d~~~C~~C------~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg~C~~~CP~~AI~ 195 (234)
T TIGR02700 146 DRKRCKGC------GICVDACPRSAIDMVDG-----KAFIRLLKCVGCGKCKEACPYNAIH 195 (234)
T ss_pred ChhHCcCc------chHHHhCCcccEEecCC-----ceEEchhhCCccchHHhhCCCCcee
Confidence 67889886 68999999999987654 5789999999999999999999997
No 121
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.91 E-value=6.6e-06 Score=81.30 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+..|..|. +.+|+.+||.+++...++ ++ .+.+|.+.|+.|+.|..+||+++|++.
T Consensus 108 ~~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~g--~V~id~dkCigCg~Cv~aCP~gai~~~ 163 (328)
T PRK10882 108 IKKQCMHCV----DPNCVSVCPVSALTKDPK-TG--IVHYDKDVCTGCRYCMVACPFNVPKYD 163 (328)
T ss_pred ccccCCCcC----chhhHhhCCCCCEEeccc-CC--cccCCHHHcCcccHHHHhCCccceecc
Confidence 356788885 358999999999987542 23 678999999999999999999999755
No 122
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.89 E-value=4.9e-06 Score=82.00 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=42.7
Q ss_pred cCCCCCcccCCCCCCCccccccCC---ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPA---RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa---~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.|.+.|+.| +.|+++||. +++.+.+. ++.+|.+.|+.||.|..+||++||+
T Consensus 166 ~d~~~C~~C------g~C~~~Cp~~a~~ai~~~~~-----~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 166 YDADRCIGC------GACVKVCKKKAVGALSFENY-----KVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eeCccCCcc------hHHHHhcChhhcCceeccCC-----eEEeCCCcCcCcchhhhhCCHhhcc
Confidence 367889987 689999996 55655432 7899999999999999999999975
No 123
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.89 E-value=1.9e-06 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEecCCCccCCcccccCCCCCe
Q 016489 350 LQINAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I 372 (388)
++||.++|++||.|..+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 68999999999999999999987
No 124
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.84 E-value=5.9e-06 Score=79.27 Aligned_cols=51 Identities=18% Similarity=0.396 Sum_probs=44.9
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee--EE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK--WT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~--w~ 375 (388)
+...|..| +.|+..||.++++..+ .+.|+++.|+.|+.|..+||+++++ |.
T Consensus 191 ~e~kc~~c------~~cv~~cp~~Ai~~~~------~~~I~~~~ci~c~~c~~ac~~gav~~~W~ 243 (354)
T COG2768 191 VEEKCYDC------GLCVKICPVGAITLTK------VVKIDYEKCIGCGQCMEACPYGAVDQNWE 243 (354)
T ss_pred eeeccccc------chhhhhCCCcceeccc------ceeechhhccchhhhhhhccCcccccchh
Confidence 35788887 7899999999998762 5999999999999999999999986 75
No 125
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.83 E-value=7.4e-06 Score=73.47 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=42.7
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCC-----CC-ceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-----KN-QLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-----~~-~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.+.|+.| +.|+.+||.++..+.... .. ...+.+|...|+.||.|..+||++||++.
T Consensus 57 ~~~~Ci~C------g~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 57 EFDKCIAC------EVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred ccccCCCc------CcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecC
Confidence 56789987 789999999875432110 00 01467888999999999999999999754
No 126
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.83 E-value=1.3e-05 Score=82.18 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred cCCCCCcccCCCCCCCccccccCCc---eEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPAR---VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~---~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~-~~I~w~~p 377 (388)
.|.+.|+.| +.|+.+||.+ ++.+.++ +.....++.+.|+.|+.|..+||+ +||++...
T Consensus 339 ~~~~~C~~C------~~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 339 IDQDKCIGC------GRCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred ECHHHCCCC------CcccccCCCcchhheeeccC--CCceEEechhhCcccchHHhhCCCCCCEEEecc
Confidence 377899987 7999999974 5655432 223678999999999999999999 99987743
No 127
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.80 E-value=1.4e-05 Score=86.26 Aligned_cols=55 Identities=25% Similarity=0.525 Sum_probs=46.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.+..|..|. ..+|+.+||.+++...++ .+.+|.++|+.|+.|..+||+++|++..
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCE----DAPCARSCPNGAISHVDD-----SIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCC----ChhHhhhCCccceeccCC-----eEEEecccccCcChhcccCCccCeeecc
Confidence 367888885 357999999999876543 6889999999999999999999998763
No 128
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.79 E-value=5.8e-06 Score=83.41 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEE--ecCCCCc-------eeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~--~~~~~~~-------~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.|.+.|+.| +.|+++||.+++.. ....++. ....+|.+.|+.||.|...||++||.+.
T Consensus 3 ~id~~kCi~C------g~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 3 VRDMSKCIGC------GRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EechhhCCcC------hHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 3488999987 79999999998762 1111111 1245899999999999999999999765
No 129
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.78 E-value=8.5e-06 Score=80.17 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=44.2
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEe--c--CCCC----ceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYV--P--DEKN----QLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~--~--~~~~----~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.|.+.|+.| +.|..+||.+++... . +..+ ...+.+|+..|..|+.|..+||++||++.
T Consensus 243 ~id~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 243 VIDHSKCIMC------RKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred EECcccCcCc------ccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 4588999987 689999999887431 1 1001 11355788999999999999999999875
No 130
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.77 E-value=2.5e-05 Score=74.74 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=52.3
Q ss_pred cCCCCCcccCCCCCCCccccccCC--ceEEEecCCC---Cc---eeEEEecCCCccCCcccccCCCC--CeeEE---CcC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDEK---NQ---LKLQINAQNCLHCKACDIKDPKQ--NIKWT---VPE 378 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa--~~y~~~~~~~---~~---~~~~i~~~~C~~Cg~C~~~cp~~--~I~w~---~p~ 378 (388)
.|.+.|..- ....++.|.++||. +++++....+ +. ....||.+.|+.||.|..+||++ ||+.. +-.
T Consensus 134 id~~~Ci~~-~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p~~~~~ 212 (254)
T PRK09476 134 VDQENCLNF-QGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLPRSLAK 212 (254)
T ss_pred cchhhcccc-CCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEehhhhhc
Confidence 688899820 00113789999996 8998864311 11 13689999999999999999998 88753 345
Q ss_pred CCCCCccc
Q 016489 379 GGGGPGYS 386 (388)
Q Consensus 379 gg~G~~y~ 386 (388)
|..|-.|+
T Consensus 213 g~~g~~~~ 220 (254)
T PRK09476 213 GKLGHHYR 220 (254)
T ss_pred cccccCcc
Confidence 66676665
No 131
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.73 E-value=9e-06 Score=78.78 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=42.1
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp 368 (388)
.|++.|.+| +.|+.+||.+|+++... ++.++.++|+.||.|+.+||
T Consensus 169 ~~~E~c~gc------~~cv~~C~~gAI~~~~~-----~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 169 VDEELCRGC------GKCVKVCPTGAITWDGK-----KLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred cCHHHhchh------HhHHHhCCCCceeeccc-----eEEEehhhccCccHHhhhCC
Confidence 378999987 69999999999999764 89999999999999999999
No 132
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.70 E-value=4e-05 Score=71.46 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred cCCCCCcccCCCCCCCccccccCC--ceEEEecCC--CCc-eeEEEecCCCccCCcccccCCCC--CeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDE--KNQ-LKLQINAQNCLHCKACDIKDPKQ--NIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa--~~y~~~~~~--~~~-~~~~i~~~~C~~Cg~C~~~cp~~--~I~w~~p 377 (388)
.|.+.|..- ....++.|.++||. .++++.... .+. ...+||.+.|+.||.|..+||++ ||+...-
T Consensus 128 id~~~C~~~-~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 128 VGHETCLNY-KGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred ECCCCcccC-CCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 577888721 11124789999998 788876421 111 25789999999999999999987 7765543
No 133
>PRK13795 hypothetical protein; Provisional
Probab=97.68 E-value=1.4e-05 Score=86.00 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=47.1
Q ss_pred EecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.+.+.+.|..| +.|+.+||.+++.+.++ ...+.+|.+.|++|+.|..+||.++|.-
T Consensus 576 ~v~~~~~C~~C------g~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVGC------GVCVGACPTGAIRIEEG---KRKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCCH------hHHHHhCCcccEEeecC---CceEEechhhcCChhHHHhhcCCCeeEe
Confidence 45678899887 78999999999988654 2258899999999999999999999753
No 134
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.68 E-value=0.00085 Score=73.89 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=49.6
Q ss_pred CccccCC----EEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHh
Q 016489 157 PYPVFPG----GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKS 216 (388)
Q Consensus 157 p~~~~~g----~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~s 216 (388)
++.+.++ ++|+||||-.+.|..++|...||..+...|+.+...... ...|+.|++..+..
T Consensus 260 ~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r 324 (765)
T PRK08255 260 ERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE 324 (765)
T ss_pred CCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 4555666 999999999999999999999999999999998764322 46789999877764
No 135
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.67 E-value=1.3e-05 Score=71.59 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCC-----ccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNC-----LHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C-----~~Cg~C~~~cp~~~I~w~ 375 (388)
+.+.|..| +.|+.+||.++++....... ....++.++| +.|+.|..+||++||++.
T Consensus 64 ~~~~C~~C------~~C~~~CP~~ai~~~~~~~~-~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~ 124 (163)
T PRK10194 64 KNNECSFC------YACAQACPESLFSPRHTRAW-DLQFTIGDACLAYQSVECRRCQDSCEPMAIIFR 124 (163)
T ss_pred cCCCCCCc------hhhHhhCcchheeccccccc-ceeeeecccCCCccCCCcCcchhhCCHhHeEee
Confidence 44555554 56777777777654332100 1233445556 577777777777777765
No 136
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.64 E-value=0.00081 Score=67.10 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=95.8
Q ss_pred CCCCeeeeeee---cC--eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEEEE
Q 016489 4 AKDGSKKENFQ---RG--VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHT 78 (388)
Q Consensus 4 ~~dG~~~~~~~---~g--~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~~~ 78 (388)
.++|.++++.- .| .+..|..+|.+||+-|.+.|.|.+ . +..+-..+.+|+- .+ ......|+..+..
T Consensus 175 ee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~----~--~v~~V~S~fVG~v--l~-N~~l~~p~hghvI 245 (509)
T KOG1298|consen 175 EEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD----P--KVEEVPSYFVGLV--LK-NCRLPAPNHGHVI 245 (509)
T ss_pred hccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcC----C--cccccchheeeee--ec-CCCCCCCCcceEE
Confidence 45677777742 22 468899999999999999986521 0 1111224566642 11 1222235555556
Q ss_pred cCCCCCCCCcceeEEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHH-Hc--CCCccccc--------CCCeeeeeccee
Q 016489 79 LGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KH--HPAIKPLL--------EGGTVVQYGART 147 (388)
Q Consensus 79 ~G~p~~~~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~-k~--~P~i~~~l--------~~~~~~~yga~~ 147 (388)
+++|.. --+|+.....+.+.+-+..+ +-|.... .++..| ++ -|.+-+.| ++|. .|.
T Consensus 246 L~~psp------il~Y~ISStEvRcl~~v~g~-~~Psi~~-gem~~~mk~~v~PqiP~~lR~~F~~av~~g~-----irs 312 (509)
T KOG1298|consen 246 LSKPSP------ILVYQISSTEVRCLVDVPGQ-KLPSIAN-GEMATYMKESVAPQIPEKLRESFLEAVDEGN-----IRS 312 (509)
T ss_pred ecCCCc------EEEEEecchheEEEEecCcc-cCCcccc-hhHHHHHHHhhCcCCCHHHHHHHHHHhhccc-----hhc
Confidence 677742 37999877677777655432 1122211 122222 21 13332222 2222 223
Q ss_pred eccCCCcCCCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHH
Q 016489 148 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAE 194 (388)
Q Consensus 148 ip~gg~~~~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAe 194 (388)
.|..... ....-.+|++|+|||--|=.|+|+.||..|+.-..+--+
T Consensus 313 mpn~~mp-a~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ 358 (509)
T KOG1298|consen 313 MPNSSMP-ATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRR 358 (509)
T ss_pred CccccCC-CCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHH
Confidence 3332111 114567899999999999999999999999986665443
No 137
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.63 E-value=4e-05 Score=73.53 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 379 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~g 379 (388)
+.|.+| +.|+..||.++++++++ ....+|.+.|..|+.|...||++||+.+..++
T Consensus 169 ~~C~~C------~~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 169 EDCDGC------GKCVEECPRGVLELEEG----KVVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred hhCCCh------HHHHHhCCccceEccCC----eeEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 678775 68999999999988653 25667899999999999999999998775443
No 138
>PRK09898 hypothetical protein; Provisional
Probab=97.62 E-value=3.1e-05 Score=71.91 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred EecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.+.|.+.|+.| +.|+.+||.+++.++.+ . .+...|..|+.|..+||++||++..
T Consensus 149 v~vd~~~CigC------~~C~~aCP~~ai~~~~~-----~--~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 149 ITVDHKRCIGC------SACTTACPWMMATVNTE-----S--KKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred EEeccccCCCc------CcccccCCCCCCEecCC-----C--CcCCcCcChHHHHHhCCcccEEEec
Confidence 34578899987 68999999999887643 1 1568999999999999999998764
No 139
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.61 E-value=2.3e-05 Score=78.59 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=43.1
Q ss_pred cCCCCCcccCCCCCCCccc--cccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 312 RDPKIPELVNLPEYAGPES--RYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~--~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.+++.|+.| +.|. .+||.+++.. + ..+|.+.|++|+.|...||++||++..+
T Consensus 299 id~dkCi~C------g~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 299 YNPERCENC------DPCLVEEACPVPAIKK--D------GTLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred EchhhCcCC------CCCcCCcCCCHhhEec--c------ceeChHhCcChHHHHhhCCccceEEeCC
Confidence 477899987 6784 8999999862 2 2589999999999999999999998643
No 140
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.60 E-value=1.8e-05 Score=74.58 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=44.8
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
+.|.+.|..| +.|+..||.+++++..+ +..++.+.|..|+.|..+||++.|.
T Consensus 170 ~id~~~C~~C------~~C~~aCP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 170 VVNQGLCMGC------GTCAAACPTRAIEMEDG-----RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EEChhhCcCh------hHHHHhCCHhhEEEeCC-----cEEEChhhccCHHHHHHHcCCCCcc
Confidence 3577899887 68999999999988654 5779999999999999999998863
No 141
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.59 E-value=2.7e-05 Score=83.89 Aligned_cols=54 Identities=26% Similarity=0.570 Sum_probs=45.9
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
++..|..|. ..+|+.+||.+++...++ .+.+|.+.|+.|+.|..+||+++|++.
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 52 NPVACHHCN----NAPCVTACPVNALTFQSD-----SVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred cCCCCcCcC----ChhHHhhCCcCceecccc-----ceecChhhCcchhhHhhhcCCCCEEcc
Confidence 567898885 347999999999987543 688999999999999999999999764
No 142
>PRK13984 putative oxidoreductase; Provisional
Probab=97.57 E-value=3.5e-05 Score=82.40 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=47.0
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCC-----CC--ceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE-----KN--QLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-----~~--~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|.+.|+.| +.|+.+||.+++.+.+.. .+ .....+|...|..|+.|...||++||+|+
T Consensus 42 ~d~~~Ci~C------~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 42 NDWEKCIGC------GTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cChhhCcCc------cchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEec
Confidence 488999997 789999999998765420 01 12468899999999999999999999985
No 143
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.56 E-value=4.1e-05 Score=87.24 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=46.2
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEec---CC------------------CC-ceeEEEecCCCccCCccccc
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVP---DE------------------KN-QLKLQINAQNCLHCKACDIK 366 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~---~~------------------~~-~~~~~i~~~~C~~Cg~C~~~ 366 (388)
+-+.|++.|+.| +.|+.+||.+++.... .+ .+ ...+.++.+.|+.||.|+.+
T Consensus 677 ~p~~~~~~Ci~C------g~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~ 750 (1165)
T TIGR02176 677 VPVWVPDNCIQC------NQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDI 750 (1165)
T ss_pred cceeccccCCCc------cchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhh
Confidence 334578899987 7899999999987530 00 00 12478999999999999999
Q ss_pred CCCC--CeeEE
Q 016489 367 DPKQ--NIKWT 375 (388)
Q Consensus 367 cp~~--~I~w~ 375 (388)
||.+ ||.+.
T Consensus 751 CP~~~~Al~m~ 761 (1165)
T TIGR02176 751 CPAKEKALVMQ 761 (1165)
T ss_pred cCCCCcccccc
Confidence 9995 88765
No 144
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.56 E-value=5.3e-05 Score=72.81 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=43.8
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.+.|..| +.|+..||.+++.++++ .....+...|..|+.|...||.+||+++.
T Consensus 168 ~~~C~~C------~~C~~~CP~~vi~~~~~----~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~ 220 (263)
T PRK00783 168 SEDCDEC------EKCVEACPRGVLELKEG----KLVVTDLLNCSLCKLCERACPGKAIRVSD 220 (263)
T ss_pred cccCCch------HHHHHhCCccccEecCC----eEEEeChhhCCCchHHHHhCCCCceEEEE
Confidence 4678776 68999999999998654 13445888999999999999999998764
No 145
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.48 E-value=0.0001 Score=68.68 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=45.3
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCC----CCceeEEEecCCCc-----cCCcccccCCC--CCeeEECc
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTVP 377 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~~~~~~i~~~~C~-----~Cg~C~~~cp~--~~I~w~~p 377 (388)
+...|..|. +.+|+.+||.++++....+ +....+.||.++|+ .|+.|..+||+ +||++...
T Consensus 89 ~~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 89 REVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred cCCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 345688773 2389999999998753211 11235679999999 99999999999 79987743
No 146
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.47 E-value=5.8e-05 Score=71.32 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=40.5
Q ss_pred ecCCCCCcccCCCCCCCccccccCC--ceEEEecCCCC-ceeEE-------EecCCCccCCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDEKN-QLKLQ-------INAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa--~~y~~~~~~~~-~~~~~-------i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..|++.|+.| +.|+++||. +...+.....+ ...+. ++...|++||.|..+||++||.+.
T Consensus 142 ~~d~~kCi~C------g~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 142 GIDHNRCVLC------TRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred EeehhhCcCc------cHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 3488999987 799999994 33333221111 11222 245689999999999999999765
No 147
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.44 E-value=8.4e-05 Score=69.85 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC----------cccccCCCCCeeEECc
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK----------ACDIKDPKQNIKWTVP 377 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg----------~C~~~cp~~~I~w~~p 377 (388)
..|.+.|+.| +.|+.+||.+++.+.+. ..+.++|..|+ .|+.+||++||++...
T Consensus 121 ~id~~~C~~C------~~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~ 184 (225)
T TIGR03149 121 DVHKDLCVGC------QYCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDL 184 (225)
T ss_pred EechhhCCcc------hHHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEecc
Confidence 3588899886 78999999999876543 12568999999 8999999999998643
No 148
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.42 E-value=4.7e-05 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.833 Sum_probs=19.1
Q ss_pred eEEEecCCCccCCcccccCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
.+.||.++|++|++|..+||.
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACPV 22 (22)
T ss_pred ceEEccccccCchhHHHhhCc
Confidence 478999999999999999983
No 149
>PRK07118 ferredoxin; Validated
Probab=97.41 E-value=5.7e-05 Score=73.29 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 316 IPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 316 ~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|++| +.|+.+||.+++.+.+. .+.+|.++|+.|+.|...||.++|++.
T Consensus 140 ~CigC------g~C~~aCp~~AI~~~~g-----~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 140 GCLGL------GSCVAACPFDAIHIENG-----LPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred CCcCh------hHHHHhCCccCeEccCC-----eEEEChhhCcChhHHHHhcCccceeee
Confidence 46665 78999999999987653 689999999999999999999999876
No 150
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.38 E-value=5.3e-05 Score=77.24 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=44.6
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.|.++|.+| +.|+. ||-++++++ +..+|.-.|-.||.|..+||.+||+..
T Consensus 558 vde~~C~gC------~~C~~-Cpf~ais~~-------ka~v~~~~C~gCG~C~~aCp~gai~~~ 607 (622)
T COG1148 558 VDEDKCTGC------GICAE-CPFGAISVD-------KAEVNPLRCKGCGICSAACPSGAIDLA 607 (622)
T ss_pred cchhhhcCC------cceee-CCCCceecc-------ccccChhhhCcccchhhhCCcccchhc
Confidence 588999997 78999 999999875 277899999999999999999999754
No 151
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.37 E-value=2.7e-05 Score=58.74 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=35.2
Q ss_pred CccccccCCceEEEecCC------------CCceeEEEecCCCc------cCCcccccCCCC
Q 016489 327 GPESRYCPARVYEYVPDE------------KNQLKLQINAQNCL------HCKACDIKDPKQ 370 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~------------~~~~~~~i~~~~C~------~Cg~C~~~cp~~ 370 (388)
+.|+.+||++||+...+. .+.+.+.++.+.|. .||.|..+||+.
T Consensus 6 ~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 6 GKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred hHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 789999999999876210 13357788889998 999999999963
No 152
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.30 E-value=0.0002 Score=77.40 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC------cccccCCCCCeeEECc
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK------ACDIKDPKQNIKWTVP 377 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg------~C~~~cp~~~I~w~~p 377 (388)
+.|.+.|+.| +.|+.+||.+++++.........+.++...|..|+ .|+..||++||++.-+
T Consensus 81 ~id~~~C~~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~ 147 (654)
T PRK12769 81 QVNQQKCIGC------KSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTE 147 (654)
T ss_pred EEecccccCc------ChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecH
Confidence 3478999987 68999999999998654211224578889999999 9999999999988643
No 153
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=97.30 E-value=8.1e-05 Score=74.23 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=42.7
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCc-------eeEEEecCCCccCCcccccCCCCCe
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~-------~~~~i~~~~C~~Cg~C~~~cp~~~I 372 (388)
+.|.+.|..| +.|+.+||.+++.+.++.... ....+|...|+.||.|..+||..++
T Consensus 8 vi~~~~C~gC------g~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 8 VIEYDVCTAC------GACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred EECcccCcCh------HHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 5688999987 789999999999886542110 0112577899999999999998664
No 154
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.30 E-value=0.00012 Score=66.37 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=45.4
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCC----CC--c--eeEEEecCCCccCC------cccccCCCCCeeEEC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE----KN--Q--LKLQINAQNCLHCK------ACDIKDPKQNIKWTV 376 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~--~--~~~~i~~~~C~~Cg------~C~~~cp~~~I~w~~ 376 (388)
.|.+.|+.| +.|+.+||.+++++.... .+ . ....++.+.|..|+ +|+.+||++||.+..
T Consensus 84 i~~~~C~~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~ 156 (181)
T PRK10330 84 VMQERCIGC------KTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVD 156 (181)
T ss_pred eChhhCCCc------chhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeC
Confidence 478899987 689999999999886421 00 0 01256778999999 999999999998764
No 155
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.25 E-value=0.00015 Score=81.12 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=41.1
Q ss_pred cCCCCCcccCCCCCCCccccccCCceE-EEe-cC-CCCceeEEEecCCCccCCcccccCCCCC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVY-EYV-PD-EKNQLKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y-~~~-~~-~~~~~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.+.+.|.+|.. -|+.|+.+||.+|+ ++. ++ +.....+.++ +.|++||.|...||.++
T Consensus 883 ~~~~rC~~C~~--~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~-~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 883 QEAARCLECNY--VCEKCVDVCPNRANVSIAVPGFQNRFQIVHLD-AMCNECGNCAQFCPWNG 942 (1019)
T ss_pred ccccccCCccc--ccchhhhhCCcccccccccCCcccCCceEEcC-ccCccccchhhhCCCCC
Confidence 36788999864 57999999999992 222 11 0112245554 99999999999999876
No 156
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.24 E-value=8.5e-05 Score=72.49 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=45.6
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccC---------CcccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~C---------g~C~~~cp~~~I~w~ 375 (388)
+.+.|.+.|+.| +.|+.+||.+++.+... ..+.++|..| ..|+.+||++|+.+-
T Consensus 156 iV~ID~ekCiGC------g~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fG 218 (321)
T TIGR03478 156 IVLVDQERCKGY------RYCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVG 218 (321)
T ss_pred eEEECHHHCcch------HHHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCCHHHhhcCcccEEEE
Confidence 456688999987 68999999999998654 1367999999 899999999998873
No 157
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.21 E-value=0.0021 Score=64.74 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCcCCCccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc------CchHHHHHH
Q 016489 152 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWD 211 (388)
Q Consensus 152 g~~~~p~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~------~~~l~~Y~~ 211 (388)
|+.-....+.+|..||||||--+.|+.++|+.+...--++..++.-+|+.. ...|+.|++
T Consensus 360 gf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~ 425 (481)
T KOG3855|consen 360 GFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYER 425 (481)
T ss_pred ccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHH
Confidence 444345889999999999999999999999999999999888888887764 234566653
No 158
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=97.19 E-value=0.00012 Score=59.91 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=37.4
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccC---------CcccccCCCCCeeEE
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKWT 375 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~C---------g~C~~~cp~~~I~w~ 375 (388)
-+++.|.+.|++| +.|+.+||-+++.++.+. + -..+|..| ..|+.+||++||++.
T Consensus 33 G~V~id~~~CigC------~~C~~aCP~~ai~~~~~~-~------~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g 96 (98)
T PF13247_consen 33 GIVVIDEDKCIGC------GYCVEACPYGAIRFDPDT-G------KARKCDLCIDRIEEGEEPACVEACPTGALTFG 96 (98)
T ss_dssp S-EEE-TTTCCTH------HHHHHH-TTS-EEEETTT-T------CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEE
T ss_pred CeEEechhhccCc------hhhhhhhccCcceeeccc-c------cCCcCceehhhhhcCCCChhHHhccccceEEe
Confidence 3456799999997 789999999999998762 2 33568888 799999999999874
No 159
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.19 E-value=0.00013 Score=69.46 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=44.7
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg---------~C~~~cp~~~I~w~ 375 (388)
+.+.|.+.|++| +.|+.+||.+++.++++ . .+.+.|..|+ .|+.+||++||.+.
T Consensus 124 ~v~id~~~CigC------~~Cv~aCP~~Ai~~~~~-----~--~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 124 IVVVDNKRCVGC------AYCVQACPYDARFINHE-----T--QTADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred CEEEcHHHCCCH------HHHHHhcCCCCCEEeCC-----C--CCcccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 445688999997 68999999999998764 1 2568999998 89999999999753
No 160
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.16 E-value=0.00017 Score=73.27 Aligned_cols=42 Identities=24% Similarity=0.567 Sum_probs=36.6
Q ss_pred CccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
+.|+..||.+|++++++ +++.||.++|++|+.|+.+||. |++
T Consensus 248 ~~~v~~Cp~~ai~~~~~----~~~~id~~~C~~Cm~Ci~~~p~-a~~ 289 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGS----KELSIDNRECVRCMHCINKMPK-ALH 289 (402)
T ss_pred hhHhhcCCccccccCCC----ceEEEcchhcCcCccccccCcc-ccc
Confidence 56899999999999643 2799999999999999999997 754
No 161
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.15 E-value=0.00013 Score=72.13 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=43.3
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCc-------------ccccCCCCCeeE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKA-------------CDIKDPKQNIKW 374 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~-------------C~~~cp~~~I~w 374 (388)
+.|.+.|+.| +.|+.+||.+++.+..+ ........|..|+. |+.+||++||.+
T Consensus 139 ~id~dkCigC------g~Cv~aCP~gai~~~~~-----~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~f 204 (328)
T PRK10882 139 HYDKDVCTGC------RYCMVACPFNVPKYDYN-----NPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIF 204 (328)
T ss_pred cCCHHHcCcc------cHHHHhCCccceecccc-----ccccceeecccccccchhhhhcCCCChhhhhccccceEe
Confidence 4588999987 68999999999987644 12234578999999 999999999976
No 162
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.15 E-value=0.00032 Score=67.18 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=44.0
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecCC----CCceeEEEecCCCc-----cCCcccccCCC--CCeeEEC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTV 376 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~~~~~~i~~~~C~-----~Cg~C~~~cp~--~~I~w~~ 376 (388)
..|..|. +.+|+.+||.+++++...+ .....+.||.++|+ .|+.|..+||+ +||++..
T Consensus 97 ~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 97 IPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred CcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 4677763 2379999999999875421 11234569999999 89999999997 8999874
No 163
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.12 E-value=0.00024 Score=63.18 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=44.2
Q ss_pred EecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEEC
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWTV 376 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg---------~C~~~cp~~~I~w~~ 376 (388)
...|.+.|..| +.|+.+||.+++.+..+. + ..++|..|+ .|+.+||++||+|..
T Consensus 90 ~~i~~~~C~~C------~~C~~aCP~~ai~~~~~~-~------~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~ 152 (161)
T TIGR02951 90 VLVDQDKCIGC------RYCVWACPYGAPQYDPQQ-G------VMGKCDGCYDRVEKGLRPACVDACPMRALDFGP 152 (161)
T ss_pred EEECHHhCCCc------hHHHhhCCCCCcEEcCCC-C------ccccCCCCHHHHHCCCCCcchhhccccceEEec
Confidence 34577889886 689999999999886541 1 357999998 999999999999874
No 164
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.08 E-value=0.00021 Score=78.61 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=39.2
Q ss_pred EecCCCCCcccCCCCCCCccccccCC----ceEEEecCCCCce-e---------------------EEE-----ecCCCc
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCPA----RVYEYVPDEKNQL-K---------------------LQI-----NAQNCL 358 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CPa----~~y~~~~~~~~~~-~---------------------~~i-----~~~~C~ 358 (388)
...|++.|+.| +.|+|+||. +++.+... |.. . ..| +...|+
T Consensus 136 I~~D~~rCI~C------~RCVr~C~ev~g~~al~~~~R--G~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~ 207 (819)
T PRK08493 136 INYDPSLCIVC------ERCVTVCKDKIGESALKTVPR--GLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCS 207 (819)
T ss_pred EEechhhcccc------cHHHhhCcccccchhhhhccC--CcccccccccccccccchhhhhhcccceecccCCCccccc
Confidence 34699999997 689999995 33333211 100 0 111 247899
Q ss_pred cCCcccccCCCCCeeE
Q 016489 359 HCKACDIKDPKQNIKW 374 (388)
Q Consensus 359 ~Cg~C~~~cp~~~I~w 374 (388)
.||.|+.+||++||.-
T Consensus 208 ~CG~Cv~VCPvGAL~~ 223 (819)
T PRK08493 208 FCGECIAVCPVGALSS 223 (819)
T ss_pred ccCcHHHhCCCCcccc
Confidence 9999999999999854
No 165
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.00 E-value=0.00033 Score=74.99 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=40.3
Q ss_pred CCeEecCCCCCcccCCCCCCCcccc--ccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCe
Q 016489 307 AHLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 307 ~Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I 372 (388)
..+.+ |++.|+.| +.|.. .||+.. ..+ + +..+|. .|+.||.|..+||.+||
T Consensus 543 ~~~~i-d~~~C~~C------~~C~~~~~CP~~~--~~~---~--~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKV-DQDKCIGC------KKCIKELGCPAIE--PED---K--EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEE-cCCcCCCc------cccccccCCCCcc--ccC---C--cceeCC-CCcCHHHHHhhCccccC
Confidence 34555 78899997 68999 999744 222 2 678888 79999999999999986
No 166
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.97 E-value=0.00024 Score=69.00 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=43.2
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg---------~C~~~cp~~~I~w~ 375 (388)
+++.|.+.|++| +.|+.+||.+++++++.. + ....|..|. +|+.+||++||.|.
T Consensus 118 ~V~id~dkCigC------~~Cv~aCP~~a~~~~~~~-~------~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 118 IVDFDHSKCIGC------GYCIVGCPFNIPRYDKVD-N------RPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred cEEEeHHHCCcc------hHHHhhCCCCCcEEcCCC-C------ChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 344588999997 689999999999986541 1 245788884 99999999999874
No 167
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=96.90 E-value=0.00015 Score=64.95 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=56.0
Q ss_pred ccccCCCCCCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 299 TNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 299 ~~h~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
..|.+.|+.-+-+.|.+.|++|. .|..+||..++.--.+ . -..+..+-|-.|+.|+..||++.|+...
T Consensus 99 ~~~~~~~~~~va~i~e~~ciGCt------kCiqaCpvdAivg~~~--~--mhtv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 99 SEHGEEQARMVALIDEANCIGCT------KCIQACPVDAIVGATK--A--MHTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred hhhhccccceeeEecchhccccH------HHHHhCChhhhhccch--h--HHHHHHHHhcCCCcccCCCCCCceeeee
Confidence 45667888889999999999984 6999999999865433 1 3557789999999999999999998753
No 168
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.88 E-value=0.00058 Score=62.88 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=46.4
Q ss_pred CCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccC------C---cccccCCCCCeeE
Q 016489 307 AHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC------K---ACDIKDPKQNIKW 374 (388)
Q Consensus 307 ~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~C------g---~C~~~cp~~~I~w 374 (388)
.-|++.|.++|++| +-|..+||-+|-.++++ ++ -.+.|..| | .|+..||++|+.|
T Consensus 92 dGiV~vd~d~CIGC------~yCi~ACPyga~~~~~~-~~------~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 92 DGIVLVDKDLCIGC------GYCIAACPYGAPQFNPD-KG------VVDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred CCEEEecCCcccCc------hHHHhhCCCCCceeCcc-cC------cccccCcchhhHhcCCCCcccccCCcccccc
Confidence 35667899999998 68999999999998874 22 16899999 8 9999999999875
No 169
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.84 E-value=0.00055 Score=72.95 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCCCCeEecCCCCCcccCCCCCCCccccccC----CceEEEecC-CCC----ceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 304 DQPAHLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPD-EKN----QLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 304 d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~-~~~----~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
|+-.-.-+-|++.|+-| +.|+++|- +.++.++-+ ++. ....-||.+-|+.||.|+.+||.+|+.=
T Consensus 138 Des~Pfy~ydp~qCIlC------gRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 138 DESNPFYIYDPNQCILC------GRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred ccCCCeEEecchheeeh------hHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhhh
Confidence 44444556799999997 79999996 234444322 111 0124478899999999999999999753
Q ss_pred ECcCCCCC
Q 016489 375 TVPEGGGG 382 (388)
Q Consensus 375 ~~p~gg~G 382 (388)
..=.|.-|
T Consensus 212 k~m~g~ag 219 (978)
T COG3383 212 KSMLGEAG 219 (978)
T ss_pred hhhhcccc
Confidence 33344444
No 170
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.74 E-value=0.00051 Score=72.10 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=42.9
Q ss_pred eEecCCCCCcccCCCCCCCcccc--ccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
..| |+++|++| +.|.+ -||+ ++..++ .++..||..-|+.||.|...||+.+|.-
T Consensus 572 ~~V-d~~~CtGC------~~C~~~~~Cps--i~~~~~---~~k~~id~~~C~GCg~C~~iCP~~a~~~ 627 (640)
T COG4231 572 YFV-DEEKCTGC------GDCIVLSGCPS--IEPDPT---FKKARIDPSSCNGCGSCVEVCPSFAIKE 627 (640)
T ss_pred cee-chhhcCCc------HHHHhhcCCce--EeecCC---CCceeecccccccchhhhhcCchhheec
Confidence 444 78999997 68964 7998 444443 1389999999999999999999999863
No 171
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.71 E-value=0.00088 Score=60.74 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=41.5
Q ss_pred CCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 016489 326 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 377 (388)
Q Consensus 326 ~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p 377 (388)
.|+.+.-+|...+++.+.-.| ++.+|.++|+.|+.|..+||+++|.....
T Consensus 11 ~g~~T~~yP~~~~~~~~~~rg--~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFRG--KPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred cCCccccCCCCCCCCCCCCCC--ceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 378899999988876554234 79999999999999999999999987643
No 172
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.64 E-value=0.0011 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=14.0
Q ss_pred cCCCccCCcccccCCCC
Q 016489 354 AQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~ 370 (388)
.++|++|+.|..+||++
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999974
No 173
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.63 E-value=0.0014 Score=62.81 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=35.0
Q ss_pred CccccccCCceEEEecCCCCceeEEEe-cCCCccCCcccccCCCCCeeE
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQIN-AQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~-~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.-|..+||.+++...-......++..+ .++|.+|+.|..+||.+++..
T Consensus 172 ~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~ 220 (255)
T TIGR02163 172 GWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLR 220 (255)
T ss_pred chhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCceee
Confidence 578999999987432211122356665 899999999999999987543
No 174
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=96.51 E-value=0.0015 Score=64.39 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=35.3
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecCC---------------CCceeEEEecCCC-----c-----cCCcccccCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPDE---------------KNQLKLQINAQNC-----L-----HCKACDIKDPK 369 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---------------~~~~~~~i~~~~C-----~-----~Cg~C~~~cp~ 369 (388)
+.|..| +.|++.||.+++..+.+. ++..+..++...| . .|+.|..+||+
T Consensus 205 ~fC~~C------~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf 278 (314)
T TIGR02486 205 KFCETC------GKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPF 278 (314)
T ss_pred ccCcch------hHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCC
Confidence 678876 789999999998865331 0111244555554 4 59999999998
Q ss_pred C
Q 016489 370 Q 370 (388)
Q Consensus 370 ~ 370 (388)
.
T Consensus 279 ~ 279 (314)
T TIGR02486 279 N 279 (314)
T ss_pred C
Confidence 7
No 175
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.49 E-value=0.0012 Score=67.73 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
.+.|.+| +.|+.+||.++ ...+ + ....|+.|+.|..+||.
T Consensus 230 ~~~Ci~C------~~Cv~vCP~gi-~~~~---~------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDC------NLCVQVCPTGI-DIRD---G------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCCh------hhhHHhCCCCC-EeCC---C------CchhChhhhHHHHhCCC
Confidence 4678876 68999999994 3322 2 23689999999999995
No 176
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.46 E-value=0.0014 Score=70.63 Aligned_cols=52 Identities=27% Similarity=0.255 Sum_probs=41.6
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC-------cccccCCCCCeeEECc
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK-------ACDIKDPKQNIKWTVP 377 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg-------~C~~~cp~~~I~w~~p 377 (388)
..|.+.|+.| +.|+.+||.+++++.++ ..++|..|+ .|..+||++||++...
T Consensus 81 ~~d~~~C~gC------~~C~~~CP~~ai~~~~~---------~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~ 139 (639)
T PRK12809 81 QLDEQKCIGC------KRCAIACPFGVVEMVDT---------IAQKCDLCNQRSSGTQACIEVCPTQALRLMDD 139 (639)
T ss_pred ecChhhCcch------hhHhhhcCCCCEEccCC---------CcccccCCcccCCCCChhhhhCccceEEEech
Confidence 4578899987 68999999999987543 235777776 6999999999998643
No 177
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.43 E-value=0.00072 Score=65.34 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=34.7
Q ss_pred CccccccCCceEEEecCCCCceeEE-EecCCCccCCcccccCCCCCee
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~-i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
..|...||.+++.-.-.+....++. +|.++|++|+.|..+||.+++.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 5799999999764221111223566 8899999999999999998753
No 178
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.42 E-value=0.002 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=15.7
Q ss_pred EEecCCCccCCcccccCCCCCeeEE
Q 016489 351 QINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 351 ~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+||.+.|+.||.|..+||.++|...
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i 26 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAI 26 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-E
T ss_pred EECcccccChhhHHhHcCccceeeE
Confidence 6899999999999999998776643
No 179
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.40 E-value=0.12 Score=53.10 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=40.2
Q ss_pred CCeeeee-eecCeEEEecEEEecccCCCccc-hhHHHhcCCCcccCCCCceEEEEEEEEEecCCC
Q 016489 6 DGSKKEN-FQRGVELRGRITLLAEGCRGSLS-EKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG 68 (388)
Q Consensus 6 dG~~~~~-~~~g~~i~Ak~vI~AdG~~s~la-r~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~ 68 (388)
|+....+ .++|.+|.+|+||+|-|..|.=. ..|.+|+|+. ..+..+.+||+ ++.|..
T Consensus 203 ~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~----~~~~p~dIGVR--vE~p~~ 261 (486)
T COG2509 203 DNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVK----MRAKPFDIGVR--VEHPQS 261 (486)
T ss_pred CCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcc----cccCCeeEEEE--EecchH
Confidence 3433444 67888999999999999987533 3467778886 34557899987 455543
No 180
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=96.37 E-value=0.0028 Score=67.92 Aligned_cols=61 Identities=7% Similarity=-0.108 Sum_probs=41.8
Q ss_pred CCCeEecCCCCCcccCCCCCCCccccccC----CceEEEecCCCCceeEEEec---CCCccCCcccccCCCCCee
Q 016489 306 PAHLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQINA---QNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 306 ~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~~---~~C~~Cg~C~~~cp~~~I~ 373 (388)
.......|.+.|+.| +.|+|+|= ..++.+... +.+..+.... -.|..||.|+.+||++||.
T Consensus 133 ~~p~i~~d~~rCI~C------~rCvr~c~e~~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~ 200 (603)
T TIGR01973 133 LGPLIKTEMTRCIHC------TRCVRFANEVAGVEDLGVIGR-GNNVEIGTYEGKTLESELSGNLIDICPVGALT 200 (603)
T ss_pred CCCCeEecCCcCccc------cHHHHHHHHhhCCceEEEecc-CCCCEEecCCCCCCCCcccCChHhhCCccccc
Confidence 344556799999997 79999994 345655442 1112332221 2588999999999999985
No 181
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.30 E-value=0.0014 Score=67.13 Aligned_cols=55 Identities=20% Similarity=0.446 Sum_probs=41.1
Q ss_pred CCCcccCCCCCCCccccccCCceEE-EecCCC------------CceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYE-YVPDEK------------NQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~-~~~~~~------------~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.|+.| +.|..+||..+-. ++.+-. -.....||..-|++|+.|..+||..+|+|+
T Consensus 224 d~CtgC------g~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~ 291 (622)
T COG1148 224 DKCTGC------GACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLN 291 (622)
T ss_pred cccccc------ccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccC
Confidence 899997 7999999996421 111100 012456889999999999999999999986
No 182
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.29 E-value=0.0011 Score=71.81 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=36.4
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEe-----cCCCCceeEEEecCCCccCCcccccCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~-----~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
+...|+.| +.|+.+||.+.+-.. ...+-.....++...|++||.|..+||.+
T Consensus 368 ~e~~CI~C------G~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRC------GACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCc------ccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 45778886 799999999987321 00001112245778899999999999976
No 183
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.25 E-value=0.002 Score=65.22 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=40.1
Q ss_pred CeEecCCCCCcccCCCCCCCccccccCC-----ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa-----~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.|-|...+.|.--.+ ..-|-+.||. -|+++..+ -.|..+-|+.||.|+.+||+.||.
T Consensus 7 riaiv~~d~ckpk~c---~~eck~~cpv~~~gk~ci~V~~~------~~ise~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 7 RIAIVSEDKCKPKKC---RQECKKSCPVVRTGKLCIEVTPT------AFISEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred eEEEeeccccCchHH---HHHHHhcCCcccccceEEEEcCc------chhhHhhhccccceeeccCcceEE
Confidence 344444455543211 2568999996 36665543 677889999999999999999986
No 184
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.21 E-value=0.0012 Score=35.23 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.3
Q ss_pred CccCCcccccCCCCC
Q 016489 357 CLHCKACDIKDPKQN 371 (388)
Q Consensus 357 C~~Cg~C~~~cp~~~ 371 (388)
|.+|+.|..+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 788999999999876
No 185
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.13 E-value=0.0021 Score=65.63 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=42.8
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKW 374 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg---------~C~~~cp~~~I~w 374 (388)
+++.|.+.|++| +.|+.+||.+++.++.+ .+ ..++|..|. .|+.+||++|+.+
T Consensus 208 iV~ID~dkCiGC------g~CV~ACPygAI~~n~~-~g------~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~f 269 (492)
T TIGR01660 208 IVLIDQDKCRGW------RMCISGCPYKKIYFNWK-TG------KSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 269 (492)
T ss_pred eEEEehhhccCh------HHHHHhCCCCCcEecCC-CC------ccccCCCChhHHhCCCCCcchhhcChhhhhh
Confidence 445688999997 68999999999988754 12 347999995 7999999998655
No 186
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=95.94 E-value=0.0051 Score=68.10 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=40.6
Q ss_pred CeEecCCCCCcccCCCCCCCccccccC----CceEEEecCCCCceeEEEe---cCCCccCCcccccCCCCCee
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN---AQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~---~~~C~~Cg~C~~~cp~~~I~ 373 (388)
+..+.|.+.|+.| +.|+|+|= .+++.+... +...++... .-+|..||.|+.+||++||.
T Consensus 143 ~~i~~d~~rCI~C------~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 143 TQVLLDRERCVLC------ARCTRFSDQIAGDPFIDLQER-GALQQVGIYEGEPFQSYFSGNTVQICPVGALT 208 (797)
T ss_pred cceeecccccccC------cHHHHHHHhhcCCcEEEeeec-CCCCEEecCCCCCcCccccCCchhhCCccccc
Confidence 3456799999997 78999994 345555432 111223322 24578899999999999986
No 187
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.87 E-value=0.0035 Score=64.65 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEe-----cCCCCceeEEEecCCCccCCcccccCCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~-----~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.+.|+.| +.|..+||.+.+... ...+-.....++...|++||.|..+||.+.
T Consensus 361 ~~~~Ci~C------g~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 361 PEKPCIRC------GKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred cCCcCcCc------cchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCCC
Confidence 45788886 799999998854210 000011123567789999999999999753
No 188
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=95.85 E-value=0.0063 Score=67.21 Aligned_cols=59 Identities=3% Similarity=-0.171 Sum_probs=39.6
Q ss_pred EecCCCCCcccCCCCCCCccccccC----CceEEEecCCCCceeEEEe---cCCCccCCcccccCCCCCeeEE
Q 016489 310 RLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN---AQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 310 ~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~---~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...|.+.|+.| +.|+|+|= .+++.+... +...++... .-.|.-||.|+.+||++||.-.
T Consensus 139 i~~d~~rCi~C------~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 139 ISTEMTRCIHC------TRCVRFGQEIAGVMELGMMGR-GEHSEITTYVGKTVDSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred eeecccccccC------cHHHHHHHHhcCCceeeeecc-CCCCEEcCCCCCCccCcccCCchhhCCccccccc
Confidence 34599999997 79999994 456665432 111122211 2347779999999999998633
No 189
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.64 E-value=0.0055 Score=54.66 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=40.7
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccC------CcccccCCCCCeeEEC
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC------KACDIKDPKQNIKWTV 376 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~C------g~C~~~cp~~~I~w~~ 376 (388)
+.|.+.|++| +.|+.+||.|+++++.. .. ...--+..|.-| ..|+.+||++|++..-
T Consensus 78 ~V~~ekCiGC------~~C~~aCPfGai~~~~~-~~--~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~ 140 (165)
T COG1142 78 QVDEEKCIGC------KLCVVACPFGAITMVSY-PV--AAKAVAVKCDLCAGREVGPACVEACPTEALELVD 140 (165)
T ss_pred EEchhhccCc------chhhhcCCcceEEEEee-cC--cchhhhhhcccccCccCCCceeeeCCHHHhhccc
Confidence 4588999997 79999999999998764 11 111123445444 4599999999987543
No 190
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=95.64 E-value=0.0093 Score=66.50 Aligned_cols=58 Identities=5% Similarity=-0.145 Sum_probs=40.3
Q ss_pred eEecCCCCCcccCCCCCCCccccccC----CceEEEecCCCCceeEEEe-----cCCCccCCcccccCCCCCeeEE
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN-----AQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~-----~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+...|.+.|+.| +.|+|+|- ..++.+... +. +..|. .-.|..||.|+.+||++||.=.
T Consensus 143 ~i~~d~~rCi~C------~rCVr~c~e~~g~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 143 FISHEMNRCIAC------YRCVRYYKDYAGGTDLGVYGA-HD--NVYFGRPEDGTLESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred ceEecCCcCccc------cHHHHHHHhhcCcceEEEeec-Cc--eeEecCCCCCcccChhhCChHhhCCchhcccc
Confidence 456799999997 79999995 344544321 11 33333 2357789999999999998633
No 191
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=95.47 E-value=0.0073 Score=49.63 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=25.8
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.+.|+.++|+.|+.|..+||+++|.+..
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhcccc
Confidence 7889999999999999999999998764
No 192
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.45 E-value=0.0074 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.8
Q ss_pred eEEEecCCCccCCcccccCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
++.||.++|+.||.|..+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 478999999999999999998
No 193
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=95.31 E-value=0.0087 Score=54.41 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=36.6
Q ss_pred CccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
|+-+.-.|..-++..++-.| ++.+|.++|+.||.|..+||++||.-.
T Consensus 12 g~~T~~yP~~~~~~p~~~rG--~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~ 58 (181)
T PRK08222 12 GTATVKYPFAPLEVSPGFRG--KPDLMPSQCIACGACTCACPANALTIQ 58 (181)
T ss_pred CCccccCCCcccCCCCCccC--ceEeChhhCcchhHHHHhCCccceEcc
Confidence 45556668877766544334 788999999999999999999998754
No 194
>PRK13984 putative oxidoreductase; Provisional
Probab=95.25 E-value=0.014 Score=62.47 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=20.5
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEec
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVP 342 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 342 (388)
+.|.+.|..| +.|+..||.+++++..
T Consensus 82 ~i~~~~c~~c------~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 82 VIDYGRCSFC------ALCVDICTTGSLKMTR 107 (604)
T ss_pred ccCcccCcCc------chHHhhCCcCcEEecc
Confidence 3477888776 6899999999987743
No 195
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.19 E-value=0.0033 Score=37.89 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.9
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVY 338 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y 338 (388)
..|++.|++| +.|+++||.+|+
T Consensus 3 ~id~~~C~~C------g~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIGC------GDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcCh------hHHHHhcchhcC
Confidence 3589999997 799999999874
No 196
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=95.11 E-value=0.0047 Score=67.07 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=35.3
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEec----CCCCc-eeEEEecCCCccCCcccccCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVP----DEKNQ-LKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~----~~~~~-~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
..+.|++| +.|..+||.+. ...+ ..++. ..+..+...|..||.|..+||.+
T Consensus 397 ~~~kCI~C------G~Cv~aCP~~l-~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 397 LANKCTQC------GNCVRTCPNSL-RVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred hcccCCCc------ccchhhCCCCc-chHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 35789886 78999999872 2110 00121 13455678999999999999986
No 197
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=95.03 E-value=0.017 Score=54.15 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=62.2
Q ss_pred ccchhhhcCCCCCCCCCCCCCCCCcccceEeecccccCCCCCCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCC
Q 016489 266 EATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK 345 (388)
Q Consensus 266 ~~~~~~~~~~~~~~~~~dg~ltfd~~~~v~~s~~~h~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~ 345 (388)
....|...+-+.||.-|-...+-|...++..+-.+.++.+ +.+...|..|.++.. =.+.|--. .+
T Consensus 118 ~~v~Pl~evI~VD~~IpGCPP~~e~I~~al~all~ge~p~-----l~~~~lc~~c~~~~~---~s~~~~~d-----~~-- 182 (247)
T COG1941 118 ESVVPLGEVIDVDYAIPGCPPSPEEIARALTALLEGEEPE-----LSGRPLCPECPLAKL---TSEKCRCD-----LD-- 182 (247)
T ss_pred cceEEchheeeeeeecCCCCcCHHHHHHHHHHHHcCCCcc-----cCCCccchhcccccc---cccccCCC-----cc--
Confidence 5578889999999999999988887776666555555433 445555555543220 01111000 01
Q ss_pred CceeEEEecC-CCccCCcccccCCCCCeeEECcCCC
Q 016489 346 NQLKLQINAQ-NCLHCKACDIKDPKQNIKWTVPEGG 380 (388)
Q Consensus 346 ~~~~~~i~~~-~C~~Cg~C~~~cp~~~I~w~~p~gg 380 (388)
...++.. -|+.|+||..+||+.||.-.-|+|-
T Consensus 183 ---~~ll~qg~~C~G~~TC~A~CP~~ai~c~Gc~g~ 215 (247)
T COG1941 183 ---CCLLEQGLPCMGCGTCAASCPSRAIPCRGCRGN 215 (247)
T ss_pred ---ceeecCCCcccCchhhhccCCccCCcccCCcCC
Confidence 3455555 7999999999999999876655553
No 198
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=95.01 E-value=0.0099 Score=47.35 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=25.1
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+.+|.++|++|+.|..+||.++|++.
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eEEECHhHCCCcchHHHHcChhhceee
Confidence 678999999999999999999999876
No 199
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=94.96 E-value=0.016 Score=63.04 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=38.2
Q ss_pred CeEecCCCCCcccCCCCCCCccccccC--Cce--EEEecCCCCceeEEEe---cCCCccCCcccccCCCCCee
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESRYCP--ARV--YEYVPDEKNQLKLQIN---AQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~~CP--a~~--y~~~~~~~~~~~~~i~---~~~C~~Cg~C~~~cp~~~I~ 373 (388)
-+...|.+.|+.| +.|+|+|= +++ +.+... +...++... .-.|.-||.|+.+||++||+
T Consensus 138 p~i~~~~~rCI~C------~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~ 203 (687)
T PRK09130 138 PLVKTVMTRCIHC------TRCVRFATEVAGVPELGAIGR-GEDMEITTYLEQALTSELSGNVIDLCPVGALT 203 (687)
T ss_pred CcEEEecccCCcc------cHHHHHHHhhcCCceEEeeec-CCCCEEccCCCCCccccccccHHhhCCCcccc
Confidence 3456689999997 79999994 444 333321 111122211 12377799999999999986
No 200
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.92 E-value=0.01 Score=47.41 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.5
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
...++.+.|+.||.|..+||++||..
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred eEEeCccccCCCCCchhhCCHHHhhc
Confidence 45788999999999999999999876
No 201
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=94.87 E-value=0.016 Score=59.75 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.7
Q ss_pred cCCCccCCcccccCCCCC
Q 016489 354 AQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~ 371 (388)
...|..||.|..+||.+.
T Consensus 342 ~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 342 PYLSSLCGACREVCPVKI 359 (432)
T ss_pred CccchhhhhhhccCCCCC
Confidence 368999999999999853
No 202
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=94.82 E-value=0.014 Score=45.20 Aligned_cols=27 Identities=26% Similarity=0.601 Sum_probs=25.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+..++.+.|++|+.|..+||.++|.|.
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEec
Confidence 578999999999999999999999885
No 203
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.80 E-value=0.0064 Score=59.30 Aligned_cols=28 Identities=25% Similarity=0.595 Sum_probs=26.0
Q ss_pred eeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 348 LKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+..+|.+.|..||.|..+||++||+|.
T Consensus 165 ~~P~~~~E~c~gc~~cv~~C~~gAI~~~ 192 (317)
T COG2221 165 WKPKVDEELCRGCGKCVKVCPTGAITWD 192 (317)
T ss_pred ecCccCHHHhchhHhHHHhCCCCceeec
Confidence 3578999999999999999999999996
No 204
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=94.69 E-value=0.015 Score=49.01 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=24.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+.++.++|++|+.|..+||.++|.+.
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred eEEECcccCcCcccHHHHCCccceEcc
Confidence 688999999999999999999998765
No 205
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.67 E-value=0.012 Score=63.66 Aligned_cols=38 Identities=21% Similarity=-0.039 Sum_probs=30.8
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
.-+|+..+||++..-+ =+..|+..|+.||..|.+.|.+
T Consensus 465 s~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 465 SVAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999985321 2578999999999999988865
No 206
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=94.66 E-value=0.039 Score=53.51 Aligned_cols=55 Identities=4% Similarity=-0.167 Sum_probs=36.0
Q ss_pred cCCCCCcccCCCCCCCccccccC----CceEEEecCCCCceeEEEecCC--Cc--cCCcccccCCCCCee
Q 016489 312 RDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQINAQN--CL--HCKACDIKDPKQNIK 373 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~~~~--C~--~Cg~C~~~cp~~~I~ 373 (388)
.|.+.|+.| +.|+++|- .+++.+... +...++...... |. .||.|+.+||++||.
T Consensus 209 ~D~nKCIlC------gRCVRaC~EVqg~~aL~~~~R-G~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~ 271 (297)
T PTZ00305 209 VVLNRCIHC------TRCVRFLNEHAQDFNLGMIGR-GGLSEISTFLDELEVKTDNNMPVSQLCPVGKLY 271 (297)
T ss_pred ecCCcCcCc------cHHHHHHHHhhCCcEEEEeec-CCCCEEeecCCCcccccCCCCceeeECCCcccc
Confidence 588999997 79999995 346666432 111233333322 43 356699999999984
No 207
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=94.64 E-value=0.03 Score=63.76 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=40.0
Q ss_pred CeEecCCCCCcccCCCCCCCcccc--ccCCceEEEecCCCCceeEEEecCCCccCCcccc-cCCCC
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPKQ 370 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~-~cp~~ 370 (388)
++.| |+++|.+| +-|.. -||+ ++..+++=| ++..||.+.|..|+.|.. .||.-
T Consensus 637 r~~I-n~~vCegC------gdC~~~s~C~a--i~p~~t~~g-rK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 637 RVFI-NEAVCEGC------GDCSVKSNCLS--VEPVETEFG-RKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred eEEE-cccccCCc------hhhhhccCCcc--eeeccccCC-ccEEECHhHCCCccccccCCCCCc
Confidence 4444 88999997 78865 7998 334443223 379999999999999999 99954
No 208
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=94.63 E-value=0.021 Score=51.96 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=22.9
Q ss_pred eEEEecCCCccCCcccccCCCCCee
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
++.++.++|++||.|..+||.++|.
T Consensus 56 ~i~~~~~kCi~Cg~C~~aCP~~ai~ 80 (183)
T TIGR00403 56 RIHFEFDKCIACEVCVRVCPINLPV 80 (183)
T ss_pred eEEeCcccCcCcCChhhhCCCCccc
Confidence 6889999999999999999999864
No 209
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=94.60 E-value=0.0094 Score=57.94 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=34.6
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCce---eEEE------------ecCCCc-cCCcccccCCCCCee
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQL---KLQI------------NAQNCL-HCKACDIKDPKQNIK 373 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~---~~~i------------~~~~C~-~Cg~C~~~cp~~~I~ 373 (388)
.+.|..| +.|+..||++++.....-+..+ .+.+ +-.+|+ +|+.|..+||++...
T Consensus 158 ~~~C~~C------~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~~ 227 (282)
T TIGR00276 158 EEYCGRC------TKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKKG 227 (282)
T ss_pred CCCCccH------HHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCCC
Confidence 4678886 6899999999975211101000 1111 234686 799999999988743
No 210
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=94.57 E-value=0.014 Score=35.08 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.6
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYE 339 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~ 339 (388)
.|++.|..| +.|..+||.+|++
T Consensus 3 id~~~C~~C------g~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIGC------GRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-------THHHHHSTTSSEE
T ss_pred EchHHCCCc------chhhhhcccccCC
Confidence 478999997 7999999999975
No 211
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=94.55 E-value=0.025 Score=45.12 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=29.1
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEECcCCCCC-Cccc
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGG-PGYS 386 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~gg~G-~~y~ 386 (388)
+.++|++.|+.|+.|.+-||..+|.+.. .|..+ ++|.
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~-~~~~~~idYd 66 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEE-GGYKVRIDYD 66 (91)
T ss_pred eeEEcccccccCceeEEECCchheeecc-CCccceeEcc
Confidence 6889999999999999999999996642 22233 6664
No 212
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=94.53 E-value=0.0084 Score=60.25 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCCCcccCCCCCCCccccccCCc-eEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPAR-VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~-~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
-++|.+| ..|..+||.- .++..-+ -.+..+.--.+.|.+||.|..+||.
T Consensus 32 ~~iC~~C------r~C~~~CpvfP~l~~r~~-~~~~d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 32 MQICNAC------RYCEGFCAVFPAMTRRLE-FGKADIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred hHhCCCC------CCccccCCCchhhhhhhc-CChhhhHHHHHhCcCcccccccCcC
Confidence 5789997 5799999974 2211000 0101222234689999999999996
No 213
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.49 E-value=0.032 Score=63.61 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=39.5
Q ss_pred CeEecCCCCCcccCCCCCCCcccc--ccCCceEEEecCCCCceeEEEecCCCccCCcccc-cCCC
Q 016489 308 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPK 369 (388)
Q Consensus 308 Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~-~cp~ 369 (388)
++.| |+++|++| +.|.. -||+ ++..+++-+ ++..||.+.|..|+.|.. .||.
T Consensus 623 ~~~I-n~~vCegC------g~C~~~s~C~a--i~~~~t~~g-rK~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 623 RLFI-NEAVCEGC------GDCGVQSNCLS--VEPVETPFG-RKRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred eEEE-cccccCCc------hhhhhccCCcc--eeeccccCC-ccEEECHHHCCCccccccCCCCC
Confidence 4444 88999997 78865 7987 334343223 379999999999999999 9994
No 214
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=94.40 E-value=0.019 Score=62.02 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=42.9
Q ss_pred ccCCCCCCeEecCCCCCcccCCCCCCCccccccC--CceEEEecCCCC-ceeEEEecCCC---ccCCcccccCCCCCee
Q 016489 301 HEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCP--ARVYEYVPDEKN-QLKLQINAQNC---LHCKACDIKDPKQNIK 373 (388)
Q Consensus 301 h~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP--a~~y~~~~~~~~-~~~~~i~~~~C---~~Cg~C~~~cp~~~I~ 373 (388)
|++....++.+.|.+.|+.| ..|+|+|- +|..++.--+.| +..+.--.+.+ ..||.|+..||++|++
T Consensus 130 ~~~~~~gp~v~~dm~RCI~C------~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt 202 (693)
T COG1034 130 HRDKDLGPLVKYDMNRCILC------TRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALT 202 (693)
T ss_pred cccccccchhhcccccceec------hhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccc
Confidence 34445566666899999997 68999994 554443211111 12233222333 5799999999999985
No 215
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=94.26 E-value=0.0077 Score=65.51 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCCCCcccCCCCCCCccccccCCceE-----EEecCCCCc-eeEEEecCCCccCCcccccCCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVY-----EYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y-----~~~~~~~~~-~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.+.|+.| +.|+++||.+.. ....+ +. ..+..+...|+.||.|..+||++.
T Consensus 402 eadrCI~C------G~Cv~aCP~~l~i~~~I~~a~~--G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 402 LAKKCTEC------GWCVRVCPNELPIPEAMEAAAK--GDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhCcCC------CCccccCCCCcchhHHHHHHhc--CChhhhhhhhhhccchhHHhhhCCCCC
Confidence 46789886 789999998631 11111 21 123455689999999999999874
No 216
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=94.15 E-value=0.011 Score=42.09 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=16.5
Q ss_pred CCccCCcccccCCCCCeeEECcC
Q 016489 356 NCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 356 ~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
+|++||.|..+||.++|++....
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~ 23 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEE 23 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETT
T ss_pred CCCCcCchHHhcCccccCccccc
Confidence 69999999999999999987553
No 217
>PRK06273 ferredoxin; Provisional
Probab=94.10 E-value=0.016 Score=51.84 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=24.8
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...++.+.|++|+.|..+||.+||.+.
T Consensus 43 ~~~id~~~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 43 PKKVFEELCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred CCeECchhCcChhHHHHhcCccceeee
Confidence 567899999999999999999999876
No 218
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=94.06 E-value=0.023 Score=57.59 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=36.8
Q ss_pred CCCCCeEecCCC--------------CCcccCCCCCCCccccccCC------ceEEEe-cCCCCc-e--------eEEEe
Q 016489 304 DQPAHLRLRDPK--------------IPELVNLPEYAGPESRYCPA------RVYEYV-PDEKNQ-L--------KLQIN 353 (388)
Q Consensus 304 d~~~Hl~v~d~~--------------~c~~~~~~~~~~~c~~~CPa------~~y~~~-~~~~~~-~--------~~~i~ 353 (388)
.+.-|+++.|.. .|++| +.|..+||+ .+|... .+--|. . ...-.
T Consensus 283 p~efHlVlvDNGRs~~~~~~~~re~L~CIRC------GaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~ 356 (459)
T COG1139 283 PKEFHLVLVDNGRSEALADEEFREALRCIRC------GACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDL 356 (459)
T ss_pred CceEEEEEEeCCchhhccChHHHHHHHhhcc------hHhhhcChhhhhccCeecccccCCcccceecchhcchhhcccc
Confidence 455788887632 48886 899999996 122100 000010 0 11112
Q ss_pred cCCCccCCcccccCCCC
Q 016489 354 AQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~ 370 (388)
..-|.+||.|..+||..
T Consensus 357 ~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 357 PYACSLCGACTEVCPVK 373 (459)
T ss_pred chhhccccCCCCcCCCC
Confidence 36799999999999964
No 219
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=94.02 E-value=0.015 Score=57.71 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=35.5
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecCCCCce--eEEEecCCCc-------------cCCcccccCCCCCeeEECcC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQL--KLQINAQNCL-------------HCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~--~~~i~~~~C~-------------~Cg~C~~~cp~~~I~w~~p~ 378 (388)
+.|-+| ..|..+||++++.-....+... .+.-+.-.|. .|+.|..+||.. +|..++
T Consensus 185 ~~Cg~C------~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn--r~~~~~ 255 (337)
T COG1600 185 DHCGSC------TRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN--RFAQLT 255 (337)
T ss_pred ccChhh------HHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc--cccccc
Confidence 678887 5899999999986433211111 1111222333 799999999977 565554
No 220
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=94.02 E-value=0.01 Score=64.36 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.5
Q ss_pred CCCCCcccCCCCCCCccccccCCceEE---EecCCCCc-eeEEEecCCCccCCcccccCCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYE---YVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~---~~~~~~~~-~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
..+.|+.| +.|+++||.+.-. +....++. ..+......|..||.|..+||+++
T Consensus 363 ~~~kCI~C------G~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 363 LAAKCTDC------GWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred hhhcCCCC------CcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 46789887 7899999987321 00001121 123334689999999999999876
No 221
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.86 E-value=0.051 Score=61.92 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=38.5
Q ss_pred ecCCCCCcccCCCCCCCcccc--ccCCceEEEecCCCCceeEEEecCCCccCCcccc-cCCC
Q 016489 311 LRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPK 369 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~-~cp~ 369 (388)
++|+++|.+| +-|.. -||+ ++..+++-| ++..||.+.|..|+.|.. .||.
T Consensus 653 ~In~~vCeGC------gdC~~~snC~a--i~p~et~~g-rK~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 653 FINELVCEGC------GDCSVQSNCLA--VQPVETEFG-RKRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEcccccCCc------hhhhhccCCce--eeeccccCC-ccEEECHhHCCCccccccCCCCC
Confidence 3488999997 78865 7887 334443223 379999999999999999 9996
No 222
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=93.76 E-value=0.021 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
++.+|.++|++|+.|...||.++|..
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~ 78 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILS 78 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEe
Confidence 68899999999999999999999864
No 223
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.71 E-value=0.035 Score=39.77 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=18.0
Q ss_pred CCccCCcccccCCCCCeeEECcCCC
Q 016489 356 NCLHCKACDIKDPKQNIKWTVPEGG 380 (388)
Q Consensus 356 ~C~~Cg~C~~~cp~~~I~w~~p~gg 380 (388)
+|++||.|..+||.++|++..-.+.
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~ 25 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGK 25 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTC
T ss_pred CCCCcchHHHHCCccCeEccCcccc
Confidence 6999999999999999987654443
No 224
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.68 E-value=0.014 Score=60.39 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCcccCCCCCCCccccccCCceEEE-----ecCCCCceeEEEecCCCccCCcccccCCCC
Q 016489 316 IPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 316 ~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
.|.+| +.|+.+||.+..-. ...++-.+...-+...|+|||.|..+||..
T Consensus 366 sCi~C------~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 366 SCIRC------SLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred ccccH------HHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC
Confidence 68776 78999999876421 000001112334668999999999999954
No 225
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=93.67 E-value=0.018 Score=59.27 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=29.7
Q ss_pred CccccccCCceEE---EecCCCCceeEEEe---------------------cCCCccCCcccccCCCCCee
Q 016489 327 GPESRYCPARVYE---YVPDEKNQLKLQIN---------------------AQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 327 ~~c~~~CPa~~y~---~~~~~~~~~~~~i~---------------------~~~C~~Cg~C~~~cp~~~I~ 373 (388)
..|..+||-+++. .+.+ .. .+..| .++|++|+.|..+||++ |+
T Consensus 182 ~~C~~~CP~g~~qs~m~d~~-tl--~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~g-i~ 248 (434)
T TIGR02745 182 QFCIYMCPYARIQSVMFDKD-TL--IVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTG-ID 248 (434)
T ss_pred chhhhhCCHHHHHHHhccCC-cc--eEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCC-CE
Confidence 4799999998875 2211 11 22222 46899999999999988 54
No 226
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=93.64 E-value=0.03 Score=52.40 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCCCCcccCCCCCCCccccccCCceEE--------------EecC--CC-Ccee---E--EEecCCCccCCcccccCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYE--------------YVPD--EK-NQLK---L--QINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~--------------~~~~--~~-~~~~---~--~i~~~~C~~Cg~C~~~cp~~ 370 (388)
+...|+.| +.|..+||+.... +..+ +. ...+ . ..+..+|+.||.|..+||.+
T Consensus 136 ~~~~Ci~C------G~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 136 QLSGCILC------GCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred hhhhcccc------ccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCC
Confidence 45789997 7999999985211 1001 00 0001 1 23456899999999999975
Q ss_pred C
Q 016489 371 N 371 (388)
Q Consensus 371 ~ 371 (388)
.
T Consensus 210 I 210 (220)
T TIGR00384 210 V 210 (220)
T ss_pred C
Confidence 3
No 227
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=93.46 E-value=0.034 Score=53.15 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=34.3
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEE-----------EecC-CCC-----cee---EE-EecCCCccCCcccccCCCC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYE-----------YVPD-EKN-----QLK---LQ-INAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~-----------~~~~-~~~-----~~~---~~-i~~~~C~~Cg~C~~~cp~~ 370 (388)
.+...|+.| |.|+.+||..+.. +... ... ... +. ....+|++||.|..+||.+
T Consensus 154 ~~~~~CI~C------G~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 154 FDAAACIGC------GACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKG 227 (250)
T ss_pred hCccccCCC------cccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCC
Confidence 356789997 8999999996432 1110 000 000 11 2246799999999999975
Q ss_pred C
Q 016489 371 N 371 (388)
Q Consensus 371 ~ 371 (388)
.
T Consensus 228 I 228 (250)
T PRK07570 228 I 228 (250)
T ss_pred C
Confidence 4
No 228
>PLN00071 photosystem I subunit VII; Provisional
Probab=93.44 E-value=0.033 Score=43.44 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.3
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 016489 350 LQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+++.++|+.|+.|..+||+++|++.
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~ 29 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeee
Confidence 56788999999999999999999865
No 229
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=93.39 E-value=0.044 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=24.4
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.+.+|.+.|+.||.|..+||.++|.+
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~~ 67 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTARL 67 (295)
T ss_pred eEEEccccCCCCchhhhhCccccccc
Confidence 79999999999999999999999873
No 230
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=93.19 E-value=0.04 Score=42.94 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=24.6
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEEC
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.++++.++|+.|+.|..+||.++|.+..
T Consensus 2 ~~~~~~~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 2 HSVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cceecCCcCcCcchHHHHCCccceeeec
Confidence 4678889999999999999999988764
No 231
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=93.16 E-value=0.079 Score=52.14 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=29.7
Q ss_pred cCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 333 CPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 333 CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
+|...+.+....-...+..+|.++|++|+.|...||..+|.
T Consensus 225 ~~g~~~~~~~~~~~~~~p~id~~~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 225 FPGSSFPYLTGGWRIDKPVIDHSKCIMCRKCWLYCPDDAII 265 (312)
T ss_pred cCccceecccCCccccceEECcccCcCcccccccCChhhhh
Confidence 67666554332100126788999999999999999999985
No 232
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=93.14 E-value=0.045 Score=49.32 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=22.5
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...++.+.||.|+.|..+||.+||+..
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~ 75 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITME 75 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEE
Confidence 455566679999999999999999844
No 233
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=93.10 E-value=0.058 Score=53.69 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=46.4
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 379 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~g 379 (388)
+-+|..|- .-.|+..||.+++.-.++ +| -+.||..+|-.=-.|+..||+.-|.++.-.|
T Consensus 180 PRiCeHCL----NPsCvasCPsgaiYKReE-DG--IVLiDQd~CRGwR~CvsgCPYKKvYfNwksg 238 (513)
T COG1140 180 PRLCEHCL----NPSCVASCPSGAIYKREE-DG--IVLIDQDKCRGWRMCVSGCPYKKVYFNWKSG 238 (513)
T ss_pred HHHHhhcC----CcHHhhcCCccccccccc-Cc--eEEeecccccchhhhhcCCCcceeEeeccCC
Confidence 35677773 356999999998765543 46 7999999999999999999999987554433
No 234
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=93.05 E-value=0.022 Score=49.64 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCCcccCCCCCCCccccccCCceE---EEecC----CCC-ceeEE--EecCCCccCCcccccCCCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVY---EYVPD----EKN-QLKLQ--INAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y---~~~~~----~~~-~~~~~--i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.|..| +.|..+||.... ..... ..+ ...+. -....|..||.|..+||.+.
T Consensus 2 ~~Ci~C------G~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 2 KACYQC------GTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred ccccCC------CCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCC
Confidence 368876 799999997421 10000 001 00111 12247999999999999765
No 235
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=93.04 E-value=0.048 Score=45.03 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=25.3
Q ss_pred eeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 348 LKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
....++.++|+.|+.|...||.++|.+.
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheEec
Confidence 3688999999999999999999999875
No 236
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=92.96 E-value=0.061 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.1
Q ss_pred cCCCccCCcccccCCCCCeeEEC
Q 016489 354 AQNCLHCKACDIKDPKQNIKWTV 376 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~I~w~~ 376 (388)
.++|+.|+.|..+||.++|.+..
T Consensus 57 ~~~Ci~C~~C~~~CP~~ai~~~~ 79 (164)
T PRK05888 57 EERCIACKLCAAICPADAITIEA 79 (164)
T ss_pred CccCCcccChHHHcCcccccccc
Confidence 36999999999999999987654
No 237
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.91 E-value=0.045 Score=52.57 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=25.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEECcCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWTVPEGG 380 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~gg 380 (388)
...||.+.|..||.|..+|+++||.| .|.|.
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~-~~~~~ 93 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVV-LPGGK 93 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEE-cCCCc
Confidence 46678899999999999999999987 44443
No 238
>CHL00065 psaC photosystem I subunit VII
Probab=92.84 E-value=0.029 Score=43.83 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.6
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 016489 350 LQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..++.++|++|+.|..+||+++|++.
T Consensus 4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~ 29 (81)
T CHL00065 4 SVKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred ccCccccCCChhHHHHHCCccchhhe
Confidence 45577899999999999999998875
No 239
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=92.76 E-value=0.043 Score=55.65 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCCCcccCCCCCCCccccccCCceEE---Ee-cCC--CCc-------eeEEEecCCCccCCcccccCCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYE---YV-PDE--KNQ-------LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~---~~-~~~--~~~-------~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.+.|+.| +.|..+||.--.. .. +.. ++. ..+.-..+.|..|+.|..+||.+.
T Consensus 4 ~~~Ci~C------g~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 4 FESCIKC------TVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred hhhCCCC------CCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCC
Confidence 3679887 8999999973211 00 000 010 011123579999999999999864
No 240
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=92.55 E-value=0.024 Score=42.45 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.9
Q ss_pred CCccCCcccccCCCCCeeEE
Q 016489 356 NCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 356 ~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+|..||.|..+||++||+-.
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 59999999999999999744
No 241
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.41 E-value=0.038 Score=57.13 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=34.9
Q ss_pred CCCCcccCCCCCCCccccccCCceEEE-----ecCCCCceeEEEecCCCcc--CCcccccCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLH--CKACDIKDPKQ 370 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~C~~--Cg~C~~~cp~~ 370 (388)
...|+.| +.|+++||.+.+-. ....+-...-..+-..|++ ||.|.-+||..
T Consensus 373 ~~~CI~C------g~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk 430 (448)
T PRK05352 373 ERAMVPI------GNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred Ccceeec------CcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC
Confidence 4678887 79999999976521 0000011123467789999 99999999964
No 242
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=92.19 E-value=0.058 Score=54.60 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEe----cCC--CCc-------eeEEEecCCCccCCcccccCCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYV----PDE--KNQ-------LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~----~~~--~~~-------~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.+.|+.| +.|..+||.-...-. +.. .+. .......+.|+.|+.|...||.+.
T Consensus 5 ~~~~Ci~C------g~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 5 SFDSCIKC------TVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred chhhcCCC------CCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 35679987 899999998543210 000 010 012233479999999999999764
No 243
>COG1146 Ferredoxin [Energy production and conversion]
Probab=92.18 E-value=0.09 Score=39.67 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.5
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEECcC
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWTVPE 378 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~~p~ 378 (388)
...||+++|..|+.|...||.+.+.|..-+
T Consensus 2 ~~~Id~~~C~~c~~C~~~CP~~~~~~~~~~ 31 (68)
T COG1146 2 EIVIDYDKCIGCGICVEVCPAGVFDLGEDE 31 (68)
T ss_pred ceEECchhcCCCChheeccChhhEEecccc
Confidence 467999999999999999999999887654
No 244
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.09 E-value=0.085 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=19.6
Q ss_pred cCCCccCCcccccCCCCCeeEE
Q 016489 354 AQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.++|++|+.|..+||.++|...
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~ 63 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVV 63 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeee
Confidence 3999999999999999988755
No 245
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=92.00 E-value=0.036 Score=40.74 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCc----cCCcccccCCCCCeeE
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCL----HCKACDIKDPKQNIKW 374 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~----~Cg~C~~~cp~~~I~w 374 (388)
|.+.|+.| +.|...||. +|+++++ ++ +.+.++...-- .+..-...||++||+|
T Consensus 2 D~~~Ci~C------g~C~~~aP~-vF~~~d~-~~-~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 2 DRDKCIGC------GLCVEIAPD-VFDYDDD-GG-KAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp -TTT--S-------SHHHHH-TT-TEEEETT-ST-EEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred ChhhCcCC------ChHHHhCcH-heeEcCC-CC-eEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 67889997 789999997 8888765 22 22333322221 2556678899999986
No 246
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=91.99 E-value=0.091 Score=39.97 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=34.8
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeE----EEecCCCcc----CCcccccCCCCCeeEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKL----QINAQNCLH----CKACDIKDPKQNIKWT 375 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~----~i~~~~C~~----Cg~C~~~cp~~~I~w~ 375 (388)
+.|.+.|+.| +.|+.+||- +|++.++ |...+ ....+..-+ ..-=...||++||+|.
T Consensus 4 ~vDrd~Cigc------g~C~~~aPd-vF~~~d~--G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 4 IVDRDTCIGC------GACLAVAPD-VFDYDDE--GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred Eechhhcccc------chhhhcCCc-ceeeCCC--cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 4588999997 799999996 6776554 42211 111122211 1123468999999985
No 247
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=91.68 E-value=0.048 Score=52.98 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=34.4
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEE----------------EecCCCC-ceeE---EEecCCCccCCcccccCCCC
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYE----------------YVPDEKN-QLKL---QINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~----------------~~~~~~~-~~~~---~i~~~~C~~Cg~C~~~cp~~ 370 (388)
+.+.+.|+.| +.|..+||...+. ++..+.+ ..++ ..+...|..||.|..+||.+
T Consensus 148 ~~~~~~CI~C------G~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 148 LWKFAQCIWC------GLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRD 221 (279)
T ss_pred hhcchhCccc------CcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCC
Confidence 3456789997 7999999985431 0100000 0011 12336899999999999965
Q ss_pred C
Q 016489 371 N 371 (388)
Q Consensus 371 ~ 371 (388)
.
T Consensus 222 I 222 (279)
T PRK12576 222 I 222 (279)
T ss_pred C
Confidence 4
No 248
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=91.56 E-value=0.0057 Score=44.98 Aligned_cols=42 Identities=26% Similarity=0.541 Sum_probs=22.3
Q ss_pred CccccccCCceEEEecCCC---------C---ceeEEEecCCCccCCcccccCCCC
Q 016489 327 GPESRYCPARVYEYVPDEK---------N---QLKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~---------~---~~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
+.|..+||.+... ..+. + ...-......|++||.|..+||.+
T Consensus 6 g~C~~~CP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 6 GYCVPACPSYIAT--PDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp STTGGGSHHHHHC--TTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CcCcccCCCcccc--CccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 7899999987641 1100 0 000114568999999999999975
No 249
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.54 E-value=0.13 Score=51.20 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.2
Q ss_pred EEecCCCccCCcccccCCCC
Q 016489 351 QINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 351 ~i~~~~C~~Cg~C~~~cp~~ 370 (388)
++....|++||.|+.+||.+
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEY 316 (334)
T ss_pred ccCccccCCcCchhhhCCCC
Confidence 45668899999999999965
No 250
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=91.43 E-value=0.08 Score=43.77 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...+|.++|++|+.|..+||.++|...
T Consensus 45 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 45 MPEFNRDKCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred EEEEChhHCcChhhHHhhCCHhhEEec
Confidence 457899999999999999999998764
No 251
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=91.24 E-value=0.13 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=22.2
Q ss_pred eEEEecCCCccCCcccccCCCCCee
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.+.++.++|++||.|..+||.+++.
T Consensus 53 ~i~~~~~~Ci~Cg~C~~aCP~~~~~ 77 (167)
T CHL00014 53 RIHFEFDKCIACEVCVRVCPIDLPV 77 (167)
T ss_pred eEEeccccCCCcCcHHHhCCCCCcc
Confidence 5778889999999999999998764
No 252
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=91.11 E-value=7.8 Score=39.00 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred CeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 7 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 7 G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
+.+..+.+++.+++|+.||.|.|..+ +.+.+.+|+.
T Consensus 232 ~~~~~v~t~~~~~~a~~VV~a~G~~~---~~l~~~~g~~ 267 (416)
T PRK00711 232 GRITGVQTGGGVITADAYVVALGSYS---TALLKPLGVD 267 (416)
T ss_pred CEEEEEEeCCcEEeCCEEEECCCcch---HHHHHHhCCC
Confidence 34444556667899999999999976 3444445654
No 253
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=91.07 E-value=0.0016 Score=47.17 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCcccCCCCCCCccccccCCceEEEec--CCCCc--eeEEEecCCCccCCcccccCCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVP--DEKNQ--LKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~--~~~~~--~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
+.|++| +.|..+||+....-.. ...+. ..+.-....|+.||.|..+||.+
T Consensus 3 ~~Ci~C------g~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 3 SKCIRC------GACTSVCPVYRNTGRFSHPPRDRRSAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HC--S-------SHHHHCSHHHHHHHHHHTSTTS--HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHccCc------cChHHHChhhhcccccccCcchhHHHhhcccccCCcCcCCccCcCccc
Confidence 457776 8999999964322111 10110 00111127999999999999975
No 254
>PRK02651 photosystem I subunit VII; Provisional
Probab=91.05 E-value=0.093 Score=40.80 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.7
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 016489 350 LQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.....++|++|+.|..+||.++|...
T Consensus 4 ~~~~~~~Ci~C~~C~~~CP~~~i~~~ 29 (81)
T PRK02651 4 AVKIYDTCIGCTQCVRACPLDVLEMV 29 (81)
T ss_pred cccccccCCCcchHHHHCCccceecc
Confidence 34457999999999999999998754
No 255
>PRK06991 ferredoxin; Provisional
Probab=90.71 E-value=0.1 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.3
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.+.|+.+.|+.|+.|..+||+++|..
T Consensus 79 ~~~id~~~CigCg~Cv~aCP~~AI~~ 104 (270)
T PRK06991 79 VAVIDEQLCIGCTLCMQACPVDAIVG 104 (270)
T ss_pred eeEEccccCCCCcHHHHhCCHhheec
Confidence 56789999999999999999999854
No 256
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=90.67 E-value=0.14 Score=45.76 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.3
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...+|.++|++|+.|..+||+++|...
T Consensus 107 ~~~id~~~Ci~Cg~C~~aCp~~ai~~~ 133 (165)
T TIGR01944 107 VALIDEDNCIGCTKCIQACPVDAIVGA 133 (165)
T ss_pred eEEEECCcCCChhHHHHhCCccceEec
Confidence 578899999999999999999998754
No 257
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=90.62 E-value=4.1 Score=39.43 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=76.1
Q ss_pred CeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEEEecCCCCCCCCcEE-EEcCCCCCC
Q 016489 7 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEIL-HTLGWPLDQ 85 (388)
Q Consensus 7 G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~~~~~~~~~~~g~v~-~~~G~p~~~ 85 (388)
|.+..+.+++.+++|+.||.|.|+.+.- |.. ..++ .. ..+.+-+ +.+... ..+... ...
T Consensus 168 ~~~~~v~~~~g~~~a~~vV~a~G~~~~~---l~~-~~~~----~~-~g~~~~~----~~~~~~-~~~~~~~~~~------ 227 (337)
T TIGR02352 168 EKVTAIVTPSGDVQADQVVLAAGAWAGE---LLP-LPLR----PV-RGQPLRL----EAPAVP-LLNRPLRAVV------ 227 (337)
T ss_pred CEEEEEEcCCCEEECCEEEEcCChhhhh---ccc-CCcc----cc-CceEEEe----eccccc-cCCcccceEE------
Confidence 4455566666689999999999987642 311 1222 11 1222212 111111 111111 111
Q ss_pred CCcceeEEEEcCCCEEEEEEEEecCCCCCCCCh---HHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCCcccc
Q 016489 86 KTYGGSFLYHMNDRQIALGLVVALNYHNPFLNP---YEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 161 (388)
Q Consensus 86 ~~~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~---~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p~~~~ 161 (388)
.....++.|..++++-+|-....+..+...++ .++.+.+. ..|.+ .+.+... .|..+-....
T Consensus 228 -~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l----~~~~~~~---------~~~g~r~~t~ 293 (337)
T TIGR02352 228 -YGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPAL----KEARLLE---------TWAGLRPGTP 293 (337)
T ss_pred -EcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCc----ccCcHHH---------heecCCCCCC
Confidence 01124677877888888854332211211222 12222222 22422 2222211 1222213345
Q ss_pred CCEEEEccCc---cc--cCCCCccchHHHHHHHHHHHHHHH
Q 016489 162 PGGAIIGCAA---GF--LNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 162 ~g~lLvGDAA---G~--vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
|+..++|... ++ +..+.+.|+-.|...|++.|+.|.
T Consensus 294 D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 294 DNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred CCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 7777777433 33 234678899999999999998875
No 258
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=90.54 E-value=0.074 Score=50.64 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.5
Q ss_pred CCCccCCcccccCCCC
Q 016489 355 QNCLHCKACDIKDPKQ 370 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~ 370 (388)
.+|.+||.|..+||.+
T Consensus 203 ~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 203 WSCTFVGYCSEVCPKH 218 (244)
T ss_pred hhCcCcccccccCCCC
Confidence 4999999999999974
No 259
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=90.47 E-value=0.19 Score=50.16 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=14.8
Q ss_pred cCCCccCCcccccCCCC
Q 016489 354 AQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~ 370 (388)
...|+.||.|..+||.+
T Consensus 306 ~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 306 YHMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhhCcCcCccccccCCC
Confidence 35799999999999964
No 260
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=90.28 E-value=0.054 Score=54.34 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCCcccCCCCCCCccccccCCc-eEEEecCCCCceeEEEecCCCccCCcccccCCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPAR-VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~-~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
-++|.+| +.|..+||.- .+..... -.++.+.--...|-+||.|..+||..+
T Consensus 13 l~iC~~C------~~C~~~CpvfPa~~~~~~-~~~~d~~~la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 13 LNLCNSC------GYCTGLCAVFPAAQGRPD-LTRGDLRHLAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred hHhCcCc------CCccccCCCccccccccc-cCHHHHHHHHHHCcCcccccccCcCCC
Confidence 4789987 6899999975 1110000 000011112478999999999999865
No 261
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.16 E-value=0.075 Score=54.94 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=34.6
Q ss_pred CCCCcccCCCCCCCccccccCCceEEE-----ecCCCCceeEEEecCCCcc--CCcccccCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLH--CKACDIKDPKQ 370 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~C~~--Cg~C~~~cp~~ 370 (388)
...|+.| +.|+++||.+.+-. ...++-+..-..+--.|++ ||.|.-+||..
T Consensus 372 ~~aCI~C------G~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 372 ERAMIPI------GIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred ccceeEC------ChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC
Confidence 4668886 89999999987521 0010111133456678999 99999999964
No 262
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=90.12 E-value=0.1 Score=38.99 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=32.9
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEe--------cCCCcc-CCcccccCCCCCeeE
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQIN--------AQNCLH-CKACDIKDPKQNIKW 374 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~--------~~~C~~-Cg~C~~~cp~~~I~w 374 (388)
.|.+.|.+| +.|+..||. +|+++++ |...+... .+.-.+ -..=...||.+||+|
T Consensus 3 vD~~~C~gc------g~C~~~aP~-vF~~d~~--g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 3 VDRDRCIGC------GLCVELAPE-VFELDDD--GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred EecccCcCc------cHHHhhCCc-cEEECCC--CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 478999997 789999996 7887765 43233332 111111 011246789999886
No 263
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=89.88 E-value=0.15 Score=51.96 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=30.9
Q ss_pred CCCcccCCCCCCCccccccCCceEEEecCC----CC-----------c---eeEEEecCCCccCCcccccCCCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYEYVPDE----KN-----------Q---LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~-----------~---~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.|.+| +.|..+||+- ....++ .+ . ....-.-..|+.|+.|...||.+.
T Consensus 23 ~~C~~C------g~C~~~CP~~--~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 23 RKCVHC------GFCTATCPTY--QLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HhCccC------CCccccCCcc--cccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCCC
Confidence 579887 7999999963 221111 00 0 011112358999999999999753
No 264
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=89.62 E-value=0.17 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
...+|.++|+.|+.|..+||+++|..
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~~ai~~ 133 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPVDAIVG 133 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCHhhhec
Confidence 57789999999999999999999864
No 265
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=89.45 E-value=0.089 Score=46.60 Aligned_cols=26 Identities=27% Similarity=0.578 Sum_probs=21.5
Q ss_pred ecCCCccCCcccccCCCCCee--EECcC
Q 016489 353 NAQNCLHCKACDIKDPKQNIK--WTVPE 378 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~I~--w~~p~ 378 (388)
-.++|+.|+.|..+||-++|. |+...
T Consensus 109 geerCIACklCeavCPaqaitieae~r~ 136 (212)
T KOG3256|consen 109 GEERCIACKLCEAVCPAQAITIEAEERT 136 (212)
T ss_pred cchhhhhHHHHHHhCCcccceeeceecC
Confidence 458999999999999999975 66433
No 266
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=89.27 E-value=0.14 Score=30.16 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=16.6
Q ss_pred ecCCCCCcccCCCCCCCccccccCC
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPA 335 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa 335 (388)
++|.+.|++| +.|+.+||+
T Consensus 4 ~iD~~rCiGC------~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGC------GACEVACPV 22 (22)
T ss_pred EEccccccCc------hhHHHhhCc
Confidence 4699999998 689999995
No 267
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=89.08 E-value=0.17 Score=47.87 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=24.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.+.+|.+.|++|+.|...||.++|...
T Consensus 142 p~~id~~~C~~C~~C~~~CP~~ai~~~ 168 (234)
T TIGR02700 142 PYMIDRKRCKGCGICVDACPRSAIDMV 168 (234)
T ss_pred ceEEChhHCcCcchHHHhCCcccEEec
Confidence 467899999999999999999998754
No 268
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=88.90 E-value=0.25 Score=50.26 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=30.9
Q ss_pred CccccccCCce---EEEecCCCCceeEEEe-cCCCccCCcccccCCCCCeeEECcCC
Q 016489 327 GPESRYCPARV---YEYVPDEKNQLKLQIN-AQNCLHCKACDIKDPKQNIKWTVPEG 379 (388)
Q Consensus 327 ~~c~~~CPa~~---y~~~~~~~~~~~~~i~-~~~C~~Cg~C~~~cp~~~I~w~~p~g 379 (388)
..|.+.||..- ..+.+. ...++ .+.|+.|+.|+.+|+........|.+
T Consensus 218 ~~c~k~cp~~~~~~v~v~p~-----~~~~~~~~~CI~C~~CidaCd~~~~~~~~~~~ 269 (386)
T COG0348 218 KRCKKVCPEPIPLWVQVCPA-----GIDIRDGLECIGCGRCIDACDDDMLKFNLPFG 269 (386)
T ss_pred ccccccCCccccceeEeccc-----ccccccccccccHhhHhhhCCHHhheeccccc
Confidence 57888998543 223322 12212 12599999999999988877666543
No 269
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=88.87 E-value=0.15 Score=47.98 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=24.3
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
...||.++|++|+.|..+||.++|++.
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~ 194 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEME 194 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEe
Confidence 467889999999999999999999875
No 270
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=88.81 E-value=0.079 Score=55.43 Aligned_cols=48 Identities=29% Similarity=0.541 Sum_probs=32.6
Q ss_pred CCCcccCCCCCCCccccccCCce-----EEEecCCCCc-eeEEEecCCCccCCcccccCCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARV-----YEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~-----y~~~~~~~~~-~~~~i~~~~C~~Cg~C~~~cp~~ 370 (388)
..|..| |.|+++||... ++.-. +|. .++.--++.|+.|+.|...||.+
T Consensus 400 ~kc~~c------G~C~~~CP~~l~i~eam~~A~--~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYC------GNCMRACPNELDIPEAMEYAA--KGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred Hhcccc------cchhccCCcccchHHHHHHhh--cCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 567665 89999999642 11111 122 24444579999999999999954
No 271
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=88.80 E-value=0.071 Score=53.02 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=15.2
Q ss_pred CCCccCCcccccCCCCC
Q 016489 355 QNCLHCKACDIKDPKQN 371 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~~ 371 (388)
-+|.+|+.|..+||.+.
T Consensus 209 w~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 209 WGCTRCYYCNSVCPMEV 225 (329)
T ss_pred ccCcChhhhhhhCCCCC
Confidence 57999999999999764
No 272
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=87.32 E-value=0.26 Score=37.48 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=19.3
Q ss_pred eEEEecCCCccCCcccccCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
++.++.+.|+.||.|...||.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EEEechhhccccchhhhcCCc
Confidence 688999999999999999994
No 273
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=87.29 E-value=0.3 Score=46.73 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.7
Q ss_pred cCCCccCCcccccCCCC
Q 016489 354 AQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~ 370 (388)
-.+|.+|+.|..+||.+
T Consensus 199 l~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 199 LGYCNITKCCTEVCPEH 215 (251)
T ss_pred cccCcCCCCcCCcCCCC
Confidence 35699999999999964
No 274
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=87.16 E-value=0.068 Score=48.75 Aligned_cols=51 Identities=20% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCcccCCCCCCCccccccCCceEE-EecCC------CCceeEEEec---CCCccCCcccccCCCCC
Q 016489 315 KIPELVNLPEYAGPESRYCPARVYE-YVPDE------KNQLKLQINA---QNCLHCKACDIKDPKQN 371 (388)
Q Consensus 315 ~~c~~~~~~~~~~~c~~~CPa~~y~-~~~~~------~~~~~~~i~~---~~C~~Cg~C~~~cp~~~ 371 (388)
+-|.+| |.|+..||++=|+ +...+ .|.+...+.. =.|+-|.+|...||.++
T Consensus 39 ~~C~QC------G~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v 99 (195)
T COG1150 39 EGCYQC------GTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGV 99 (195)
T ss_pred hHhhcc------CcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCC
Confidence 348876 8999999998773 11100 0111112222 36999999999999876
No 275
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=86.90 E-value=0.14 Score=48.94 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCccCCcccccCCCCC
Q 016489 355 QNCLHCKACDIKDPKQN 371 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~~ 371 (388)
-+|.+||.|..+||.+.
T Consensus 209 ~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 209 ADCGNAQNCVRVCPKGI 225 (249)
T ss_pred eCCcCcCcccccCCCCC
Confidence 68999999999999643
No 276
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=86.70 E-value=0.24 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.8
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
...++.++|++||.|..+||+++|+-
T Consensus 677 ~p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 677 VPVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred cceeccccCCCccchHHhcChhhccc
Confidence 57789999999999999999999974
No 277
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=86.20 E-value=0.32 Score=37.03 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.7
Q ss_pred EecCCCccCCcccccCCCCC
Q 016489 352 INAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.....|+.||.|+.+||++-
T Consensus 47 ~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred cCCccCCCcChHhhhcCCCC
Confidence 35578999999999999764
No 278
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=86.17 E-value=15 Score=36.28 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=79.4
Q ss_pred eeeeeeecCeEEEecEEEecccCCCccchhHHHhcC-CCcccCCCCc-eEEEEEEEEEecCCCCCCCCcE-EEEcCCCCC
Q 016489 8 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK-LREKSHAQHQ-TYALGIKEVWEIDEGKHNPGEI-LHTLGWPLD 84 (388)
Q Consensus 8 ~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~g-l~~~~~~~~~-~~~lgvke~~~~~~~~~~~g~v-~~~~G~p~~ 84 (388)
+...+.+++.+++|+.||.|.|..+.. +...++ +.. ...|. .+.+-+ +.++........ ....
T Consensus 188 ~~~~v~t~~g~i~a~~vv~a~G~~~~~---l~~~~~~~~~--~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~----- 253 (387)
T COG0665 188 RVVGVETDGGTIEADKVVLAAGAWAGE---LAATLGELPL--PLRPVRGQALTT----EPPEGLLADGLAPVVLV----- 253 (387)
T ss_pred cEEEEEeCCccEEeCEEEEcCchHHHH---HHHhcCCCcC--ccccccceEEEe----cCCCccccccccceEEE-----
Confidence 455667777779999999999988543 222345 221 11111 112111 111111111100 1111
Q ss_pred CCCcceeEEEEcCCCEEEEEEEEecCC-CCCC---CC--hHHHHHHHH-cCCCcccccCCCeeeeecceeeccCCCcCCC
Q 016489 85 QKTYGGSFLYHMNDRQIALGLVVALNY-HNPF---LN--PYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIP 157 (388)
Q Consensus 85 ~~~~Gggwiy~~~~~~vsVGlv~~l~~-~~~~---~~--~~~~~~~~k-~~P~i~~~l~~~~~~~yga~~ip~gg~~~~p 157 (388)
....++|+.+..++++.+|-...... .... .+ ..++++... ..|.+....... .| +...+.
T Consensus 254 -~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~---~w-~g~~~~------- 321 (387)
T COG0665 254 -VDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEA---AW-AGLRPP------- 321 (387)
T ss_pred -ecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCccccccccce---ee-eccccC-------
Confidence 12345788888788899998766541 1211 11 123444443 335443322111 11 111111
Q ss_pred ccccCCEEEEccCcc---c--cCCCCccchHHHHHHHHHHHHHHHH
Q 016489 158 YPVFPGGAIIGCAAG---F--LNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG---~--vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
...|+.=+||-+.. + ..-+.+.|+.+|-.+|+++|+.|..
T Consensus 322 -t~pd~~P~iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 322 -TTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLADLILG 366 (387)
T ss_pred -CCCCCCceeCCCCCCCCEEEEecCCCcChhhccHHHHHHHHHHcC
Confidence 11444445553111 1 1124567999999999999998865
No 279
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=85.65 E-value=0.28 Score=40.08 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=21.9
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 016489 350 LQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
..+..+.|++|+.|..+||.++|...
T Consensus 29 ~~~~~~~C~~C~~C~~~CP~~~i~~~ 54 (101)
T TIGR00402 29 ESLFSAVCTRCGECASACENNILQLG 54 (101)
T ss_pred cccCcCcCcChhHHHHHcCcccceec
Confidence 44566899999999999999998764
No 280
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=85.59 E-value=0.24 Score=46.73 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCCccCCcccccCCCCC
Q 016489 355 QNCLHCKACDIKDPKQN 371 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~~ 371 (388)
.+|.+||.|..+||.+.
T Consensus 198 ~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 198 FRCHTIMNCVEVCPKGL 214 (232)
T ss_pred ccCcCcCCcCccccCCC
Confidence 58999999999999753
No 281
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=85.47 E-value=0.39 Score=46.15 Aligned_cols=44 Identities=14% Similarity=0.434 Sum_probs=32.4
Q ss_pred CccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
.--...+|+.+-.+... +.+.+ .+.|.+|+.|...||.++|.+.
T Consensus 146 ~~HAKw~p~~~~~yr~~----p~I~i-~~~C~~C~~C~~~CP~~vi~~~ 189 (263)
T PRK00783 146 KEHAKWQPGSACGYKYY----PRIEV-SEDCDECEKCVEACPRGVLELK 189 (263)
T ss_pred cccCccCcceEeeeccc----ccccc-cccCCchHHHHHhCCccccEec
Confidence 34556778765443322 25777 7999999999999999999875
No 282
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=85.07 E-value=0.35 Score=36.10 Aligned_cols=19 Identities=21% Similarity=0.670 Sum_probs=17.7
Q ss_pred EEEecCCCccCCcccccCC
Q 016489 350 LQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp 368 (388)
++||.++|+.||.|...||
T Consensus 1 V~vD~~~C~gcg~C~~~aP 19 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAP 19 (65)
T ss_pred CEEecccCcCccHHHhhCC
Confidence 4789999999999999999
No 283
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=84.75 E-value=0.59 Score=44.70 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=26.9
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
.+++|++||+|+|..|.+++.+.+++++.
T Consensus 155 ~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 155 LTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred EEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 58999999999999999999999988876
No 284
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=84.63 E-value=0.36 Score=50.43 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCCCCcccCCCCCCCccccccCCceEE-------------E--ecCCCCc---eeEEEecCCCccCCcccccCCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYE-------------Y--VPDEKNQ---LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~-------------~--~~~~~~~---~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.+.|+.| |.|..+||.-... . ...+... ..+.-...+|+.||.|..+||.+.
T Consensus 131 ~~~~Ci~C------G~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 131 KLRGCIEC------LSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred CchhcccC------ccccccCCCCccccCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCCC
Confidence 34689987 8999999975321 0 0000000 011223468999999999999754
No 285
>PLN03000 amine oxidase
Probab=84.44 E-value=7.6 Score=43.60 Aligned_cols=38 Identities=16% Similarity=-0.032 Sum_probs=32.0
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
+++.++|++.....|- -||-|+.||..||+.|.+.++.
T Consensus 588 GRIfFAGEaTs~~~~G---TVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 588 GRLFFAGEATTRRYPA---TMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CcEEEeehHHhCCCCe---eHHHHHHHHHHHHHHHHHHhhh
Confidence 4899999998876664 5667999999999999988864
No 286
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=84.29 E-value=0.41 Score=47.56 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=35.9
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
.|...|..| +.|...||. .|.+.++ . -..+...-|..|++|..+||.
T Consensus 2 ~~~~~c~~C------g~C~a~cp~-~i~~~~~--~--~~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGC------GTCAAVCPY-AITERDE--A--PLLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccc------hhhHhhCCc-eEEEecc--c--chhhhhhhcccchHHhhhCcc
Confidence 467889887 899999999 6665543 1 236667777778899999993
No 287
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=83.95 E-value=0.38 Score=43.48 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=23.5
Q ss_pred eeEEEecCCCccCCcccccCCCCCee
Q 016489 348 LKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
....|+.++|+.|..|+.+||.+||.
T Consensus 108 ~va~i~e~~ciGCtkCiqaCpvdAiv 133 (198)
T COG2878 108 MVALIDEANCIGCTKCIQACPVDAIV 133 (198)
T ss_pred eeeEecchhccccHHHHHhCChhhhh
Confidence 36789999999999999999999984
No 288
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=83.80 E-value=7.5 Score=38.85 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=16.9
Q ss_pred CCccchHHHHHHHHHHHHHHH
Q 016489 177 PKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 177 ~~~~Gi~~Am~SG~lAAeai~ 197 (388)
+.+.|+..|-.+|++.|+.|.
T Consensus 340 ~~g~G~~~ap~~g~~la~~i~ 360 (381)
T TIGR03197 340 LGSRGLTSAPLAAEILAAQIC 360 (381)
T ss_pred ccchHHHHHHHHHHHHHHHHh
Confidence 457888899998888888774
No 289
>PRK13795 hypothetical protein; Provisional
Probab=83.60 E-value=0.53 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.7
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
++.++.+.|++|+.|...||+++|...
T Consensus 575 ~~v~~~~~C~~Cg~C~~~CP~~ai~~~ 601 (636)
T PRK13795 575 RLLRRAAECVGCGVCVGACPTGAIRIE 601 (636)
T ss_pred eEEEccccCCCHhHHHHhCCcccEEee
Confidence 678899999999999999999998765
No 290
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=83.50 E-value=0.61 Score=47.28 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.6
Q ss_pred eEEEecCCCccCCccc--ccCCCCCee
Q 016489 349 KLQINAQNCLHCKACD--IKDPKQNIK 373 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~--~~cp~~~I~ 373 (388)
++.++.++|++|+.|. .+||+++|+
T Consensus 296 ~p~id~dkCi~Cg~C~~~~aCPt~AI~ 322 (391)
T TIGR03287 296 RPKYNPERCENCDPCLVEEACPVPAIK 322 (391)
T ss_pred eEEEchhhCcCCCCCcCCcCCCHhhEe
Confidence 6788999999999995 899999986
No 291
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=83.45 E-value=0.31 Score=46.18 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=15.0
Q ss_pred CCCccCCcccccCCCCC
Q 016489 355 QNCLHCKACDIKDPKQN 371 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~~ 371 (388)
..|..|+.|..+||.+-
T Consensus 201 ~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 201 FRCRTIMNCVDVCPKGL 217 (235)
T ss_pred ccccCcchhccccCCCC
Confidence 58999999999999753
No 292
>PRK08764 ferredoxin; Provisional
Probab=83.38 E-value=0.45 Score=41.07 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred EecCCCccCCcccccCCCCCeeE
Q 016489 352 INAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
++.++|++|+.|..+||.++|..
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred ECcccCcCcchHHHhCChhhcCc
Confidence 45689999999999999999865
No 293
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.47 E-value=0.72 Score=47.28 Aligned_cols=28 Identities=29% Similarity=0.730 Sum_probs=23.5
Q ss_pred eeEEEecCCCccCCcccccCCC---CCeeEE
Q 016489 348 LKLQINAQNCLHCKACDIKDPK---QNIKWT 375 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp~---~~I~w~ 375 (388)
....+|.++|++|+.|...||. ++|.+.
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~ 365 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWD 365 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeec
Confidence 3678899999999999999997 477653
No 294
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=80.94 E-value=0.5 Score=34.57 Aligned_cols=18 Identities=22% Similarity=0.743 Sum_probs=11.6
Q ss_pred EecCCCccCCcccccCCC
Q 016489 352 INAQNCLHCKACDIKDPK 369 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~ 369 (388)
||.+.|+.||.|...+|.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp E-TTT--S-SHHHHH-TT
T ss_pred CChhhCcCCChHHHhCcH
Confidence 578999999999999994
No 295
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=80.91 E-value=0.52 Score=44.37 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=37.0
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
--.|.+| +.|...||+.+++.. + -..+..+|+.||+|-+.||...
T Consensus 189 g~~C~G~------~TC~A~CP~~ai~c~-G------c~g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 189 GLPCMGC------GTCAASCPSRAIPCR-G------CRGNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred CCcccCc------hhhhccCCccCCccc-C------CcCCcccchhhhHHHHHHhHHh
Confidence 3489997 569999999999876 2 4457899999999999998654
No 296
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=80.88 E-value=0.59 Score=46.04 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.6
Q ss_pred eEEEecCCCccCCcccccCCC---CCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPK---QNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~---~~I~w~ 375 (388)
...++.++|++||.|..+||. ++|.|.
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~ 192 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKAVGALSFE 192 (314)
T ss_pred CCceeCccCCcchHHHHhcChhhcCceecc
Confidence 467899999999999999996 566663
No 297
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=80.81 E-value=0.24 Score=35.49 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=11.4
Q ss_pred cCCCccCCcccccCCC
Q 016489 354 AQNCLHCKACDIKDPK 369 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~ 369 (388)
.+.|+.||.|..+||.
T Consensus 2 ~~~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPV 17 (57)
T ss_dssp HHC--S-SHHHHCSHH
T ss_pred HHHccCccChHHHChh
Confidence 4789999999999994
No 298
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=80.77 E-value=0.95 Score=44.22 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=34.0
Q ss_pred CccccccCCceEEEecCCCCceeEEEecCCCccCCcccccC-CCCCee
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKD-PKQNIK 373 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~c-p~~~I~ 373 (388)
..|+..||.+|+++++.+++.+..+.|..+|.-|..|...| -.+.|+
T Consensus 203 ~~~~~~cP~~Vf~i~~~~~~~~~~V~~~~~ct~crec~~~~~~~~~V~ 250 (291)
T cd07032 203 EKLQKCFPPGVIDIEEVKGKKKAVVANPRKDTLSREVLRHEEFKDKVE 250 (291)
T ss_pred HHHHhhCCCccEEecccCCCceEEEcccccCcccHhHhhhhccCCcee
Confidence 46899999999999653222345677889999999997665 234454
No 299
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=80.48 E-value=0.91 Score=42.81 Aligned_cols=28 Identities=21% Similarity=0.578 Sum_probs=23.2
Q ss_pred eEEEecCCCccCCcccccCCC--CCeeEEC
Q 016489 349 KLQINAQNCLHCKACDIKDPK--QNIKWTV 376 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~--~~I~w~~ 376 (388)
.+.+|.++|+.|+.|..+||. +++.+..
T Consensus 140 ~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~ 169 (234)
T PRK07569 140 RFGIDHNRCVLCTRCVRVCDEIEGAHTWDV 169 (234)
T ss_pred cEEeehhhCcCccHHHHHHHHhcCCceeee
Confidence 688999999999999999993 5555553
No 300
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=80.40 E-value=0.38 Score=46.62 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.7
Q ss_pred cCCCccCCcccccCCCCC
Q 016489 354 AQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~ 371 (388)
-.+|..|+.|..+||.+-
T Consensus 243 l~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 243 LYRCHTIRNCSNACPKGL 260 (276)
T ss_pred CCcCcChhhccccCCCCC
Confidence 378999999999999754
No 301
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=79.76 E-value=0.53 Score=45.85 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=18.5
Q ss_pred cCCCccCCcccccCCCCCee
Q 016489 354 AQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.+.|.+|+.|..+||++||.
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCccHHHHHHhcCccccc
Confidence 57899999999999999985
No 302
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=79.48 E-value=51 Score=31.60 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 6 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 6 dG~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
++++.++.+.+.+++|+.||.|.|..+ .+|.+.+++.
T Consensus 177 ~~~v~gv~~~~g~i~ad~vV~a~G~~s---~~l~~~~~~~ 213 (358)
T PF01266_consen 177 GGRVTGVRTSDGEIRADRVVLAAGAWS---PQLLPLLGLD 213 (358)
T ss_dssp TTEEEEEEETTEEEEECEEEE--GGGH---HHHHHTTTTS
T ss_pred ccccccccccccccccceeEecccccc---eeeeeccccc
Confidence 355555666666799999999999864 4455556654
No 303
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=78.92 E-value=0.88 Score=44.42 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=24.7
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 016489 349 KLQINAQNCLHCKACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~I~w~ 375 (388)
+.++..+.|..||.|...||.+||+-.
T Consensus 187 ~p~v~e~kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 187 KPVVVEEKCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred CceeeeecccccchhhhhCCCcceecc
Confidence 688999999999999999999999754
No 304
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=78.62 E-value=0.52 Score=44.73 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCCccCCcccccCCCCC
Q 016489 354 AQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~ 371 (388)
--+|..|+.|..+||.+-
T Consensus 205 i~~C~~C~~C~~vCPk~I 222 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKDL 222 (239)
T ss_pred cCCCcCcCccchhCCCCC
Confidence 358999999999999643
No 305
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=78.09 E-value=53 Score=32.92 Aligned_cols=22 Identities=18% Similarity=-0.013 Sum_probs=18.4
Q ss_pred CCccchHHHHHHHHHHHHHHHH
Q 016489 177 PKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 177 ~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
+.+.|+-.|-.+|++.|+.|..
T Consensus 363 ~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 363 WGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred cCCcchhhchHHHHHHHHHHhC
Confidence 4678999999999999988753
No 306
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=77.56 E-value=1.1 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=18.7
Q ss_pred EEecCCCccCCcccccCCCCCe
Q 016489 351 QINAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 351 ~i~~~~C~~Cg~C~~~cp~~~I 372 (388)
..+.+.||.||.|..+||...+
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~~ 174 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGSA 174 (250)
T ss_pred hhCccccCCCcccccccCCccc
Confidence 4567999999999999998753
No 307
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=76.97 E-value=0.52 Score=47.25 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCC-CCc---------------eeEEEecCCCccCCcccccCCCCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQ---------------LKLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-~~~---------------~~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.+.|..| +.|..+||+-... .... .+. ..+.-....|+.|+.|...||.+.
T Consensus 8 ~~~Cv~C------g~C~~~CP~~~~~-~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 8 LDKCVHC------GFCTNVCPSYRAT-EALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHhcCCC------CcccCcCCCcccc-CCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCC
Confidence 3578886 8999999997654 1111 110 011112278999999999999765
No 308
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=76.22 E-value=1.3 Score=44.35 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=8.6
Q ss_pred CCCCcccCCCCCCCccccccCC
Q 016489 314 PKIPELVNLPEYAGPESRYCPA 335 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa 335 (388)
.+.|++| +.|..+||+
T Consensus 225 ~~rCi~C------g~C~~~CPt 240 (344)
T PRK15055 225 DSRCIAC------GRCNFVCPT 240 (344)
T ss_pred HhhCccC------ccccccCCc
Confidence 3455554 455555555
No 309
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=75.95 E-value=3.6 Score=39.35 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.5
Q ss_pred eEEEecEEEecccCCCccchhHHHhc
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNF 42 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~ 42 (388)
.+|+||+||+|+|.+|.+++++.++.
T Consensus 158 ~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 158 LTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred EEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 57999999999999999999875543
No 310
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=75.46 E-value=1.6 Score=48.60 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=26.2
Q ss_pred CCccccccCCceEEEecC--CCCceeEEEecCCCccCCcc
Q 016489 326 AGPESRYCPARVYEYVPD--EKNQLKLQINAQNCLHCKAC 363 (388)
Q Consensus 326 ~~~c~~~CPa~~y~~~~~--~~~~~~~~i~~~~C~~Cg~C 363 (388)
||.|+.+||+||+...+. ....+.+..-..-|.+|+++
T Consensus 209 CG~Cv~VCPvGAL~~k~~~~~~~~wel~~v~TvCp~CsvG 248 (819)
T PRK08493 209 CGECIAVCPVGALSSSDFQYTSNAWELKKIPATCPHCSDC 248 (819)
T ss_pred cCcHHHhCCCCccccCccccccCccccccccCcCCCCccC
Confidence 489999999999876432 11223444455779998875
No 311
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=75.15 E-value=1 Score=44.59 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.4
Q ss_pred cCCCccCCcccccCCCCCee
Q 016489 354 AQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~I~ 373 (388)
.+.|..|+.|..+||++||.
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~ 223 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAIS 223 (314)
T ss_pred cccCcchhHHHhhCCccccC
Confidence 37899999999999999986
No 312
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=74.82 E-value=1.2 Score=40.78 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=16.7
Q ss_pred cCCCccCCcccccCCCCCe
Q 016489 354 AQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~I 372 (388)
-++|++||+|-..||.+..
T Consensus 38 l~~C~QCG~CT~sCPs~r~ 56 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRF 56 (195)
T ss_pred HhHhhccCcccCCCCCccc
Confidence 5779999999999998764
No 313
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=74.69 E-value=1.9 Score=41.32 Aligned_cols=40 Identities=23% Similarity=0.668 Sum_probs=28.5
Q ss_pred ccccccCCce--EEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 016489 328 PESRYCPARV--YEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 374 (388)
Q Consensus 328 ~c~~~CPa~~--y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~w 374 (388)
.-..+.|+.+ |.+.. .+.++ ++|.+|+.|...||.++|..
T Consensus 147 ~hakw~p~~~~~yr~~P------~i~i~-~~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 147 EHAKWQPTTACGYKYYP------VIEID-EDCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred CCCCCCCccEEEEEeec------ceech-hhCCChHHHHHhCCccceEc
Confidence 3445556543 44332 46666 89999999999999999865
No 314
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=74.68 E-value=99 Score=32.41 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=19.8
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
.+|+|++||.|.|+.+ .++.+.+|+.
T Consensus 175 ~~i~a~~VVnAaG~wa---~~l~~~~g~~ 200 (516)
T TIGR03377 175 ERIEAQVVINAAGIWA---GRIAEYAGLD 200 (516)
T ss_pred EEEEcCEEEECCCcch---HHHHHhcCCC
Confidence 4799999999999885 4555556654
No 315
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=72.56 E-value=1.4 Score=44.17 Aligned_cols=18 Identities=33% Similarity=0.844 Sum_probs=15.8
Q ss_pred ecCCCccCCcccccCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~ 370 (388)
++.+|++||.|..+||..
T Consensus 349 ~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 349 KASDCIECGQCLEKCPQH 366 (391)
T ss_pred cccccchhhhhhhcCCCc
Confidence 478999999999999953
No 316
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=72.38 E-value=4.1 Score=38.64 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=29.7
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHh
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
...+++..+||+++. ...-+..|+..|+.||..|.+.
T Consensus 263 t~~~~vya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 263 TSVPGVFAAGDVRDK----GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred cCCCCEEEeecccCc----chhhhhhhhhhHHHHHHHHHhh
Confidence 357899999999985 1234779999999999988754
No 317
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=71.90 E-value=1.4 Score=41.65 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCCCCcccCCCCCCCccccccCCc--------------eEEEecCC--CC--ce--eEEEe--cCCCccCCcccccCCCC
Q 016489 313 DPKIPELVNLPEYAGPESRYCPAR--------------VYEYVPDE--KN--QL--KLQIN--AQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~--------------~y~~~~~~--~~--~~--~~~i~--~~~C~~Cg~C~~~cp~~ 370 (388)
.-..|+.| +.|+.+||+- +|.+..+. .+ .+ .+.-. -.+|..|+.|..+||.+
T Consensus 140 ~~~~CI~C------g~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 140 ELSECILC------GCCTAACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred hhhhcccc------chhhhhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCC
Confidence 34679887 8999999962 33332221 11 01 11112 26799999999999975
No 318
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=71.87 E-value=35 Score=33.59 Aligned_cols=38 Identities=18% Similarity=-0.016 Sum_probs=24.6
Q ss_pred cCCEEEEccCc---cccC--CCCccchHHHHHHHHHHHHHHHH
Q 016489 161 FPGGAIIGCAA---GFLN--VPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 161 ~~g~lLvGDAA---G~vd--p~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
.|+.-+||-.. |++- -+.+.|+-.|-..|++.|+.|..
T Consensus 317 ~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~ 359 (376)
T PRK11259 317 PDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLAQD 359 (376)
T ss_pred CCCCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHHhc
Confidence 34555565432 3322 24567899999999999988754
No 319
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=71.44 E-value=1.5 Score=45.21 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=16.6
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
+..+|+.||.|...||.-.
T Consensus 291 e~~~CIrCG~C~~~CPvy~ 309 (432)
T TIGR00273 291 EVLACIRCGACQNECPVYR 309 (432)
T ss_pred hHhhCCCCCCccccCcchh
Confidence 5789999999999999644
No 320
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=70.95 E-value=1.7 Score=43.30 Aligned_cols=16 Identities=25% Similarity=0.820 Sum_probs=14.8
Q ss_pred cCCCccCCcccccCCC
Q 016489 354 AQNCLHCKACDIKDPK 369 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~ 369 (388)
.++|+.||+|..+||+
T Consensus 219 ~~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 219 DSRCIACGRCNTVCPT 234 (334)
T ss_pred HhhCCcCccccccCCc
Confidence 4799999999999996
No 321
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=70.54 E-value=1.5 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.0
Q ss_pred ecCCCccCCcccccCCCCCe
Q 016489 353 NAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~I 372 (388)
....|++||.|..+||.+.+
T Consensus 368 ~e~~CI~CG~Cv~aCP~~ll 387 (695)
T PRK05035 368 PEQPCIRCGACADACPASLL 387 (695)
T ss_pred chhhcCCcccHHHHCCccch
Confidence 45889999999999999886
No 322
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=69.54 E-value=2.2 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.8
Q ss_pred EecCCCccCCcccccCCCCCe
Q 016489 352 INAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~I 372 (388)
.+.+.|+.||.|...||...+
T Consensus 149 ~~~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 149 WKFAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred hcchhCcccCcccccCCCccc
Confidence 356899999999999997654
No 323
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=69.45 E-value=2 Score=41.15 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=16.5
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
....|+.||.|..+||.-.
T Consensus 140 ~~~~CI~CG~C~s~CPv~~ 158 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVR 158 (251)
T ss_pred chhhcccCCcccCcCCccc
Confidence 5588999999999999665
No 324
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=69.40 E-value=2 Score=41.06 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.5
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
+..+|+.||.|..+||...
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 5689999999999999665
No 325
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=69.31 E-value=6.3 Score=38.69 Aligned_cols=33 Identities=30% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
+|+.++||...-..+ .||.-|+.||+.||+.|+
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHhC
Confidence 799999997654333 699999999999999874
No 326
>PRK07233 hypothetical protein; Provisional
Probab=69.12 E-value=6.4 Score=39.59 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=29.4
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.+|+.++||. . ...-+.||.-|+.||+.||+.+.+.++
T Consensus 395 ~~~l~~aG~~--~-~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 395 IEGLYLAGMS--Q-IYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cCCEEEeCCc--c-cCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 4899999992 2 222345899999999999999987654
No 327
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=67.81 E-value=2.1 Score=39.86 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=16.7
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
...+|+.||.|..+||...
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~ 154 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFW 154 (220)
T ss_pred hhhhccccccccccCCCCc
Confidence 4689999999999999764
No 328
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=67.14 E-value=24 Score=38.34 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=16.6
Q ss_pred CCccchHHHHHHHHHHHHHHH
Q 016489 177 PKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 177 ~~~~Gi~~Am~SG~lAAeai~ 197 (388)
+.+.|+..|..+|++.|+.|.
T Consensus 611 ~gs~Gl~~ap~~a~~lA~li~ 631 (662)
T PRK01747 611 LGSRGLCSAPLGAELLASQIE 631 (662)
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 567888888888888888774
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=65.73 E-value=8.8 Score=38.00 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=34.4
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..|++..+||++.+-+..+.+=...|+..|..||+.|.+.+++
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 5699999999999865444443467999999999999888765
No 330
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=64.44 E-value=2.4 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=10.2
Q ss_pred CCccCCcccccCCCCC
Q 016489 356 NCLHCKACDIKDPKQN 371 (388)
Q Consensus 356 ~C~~Cg~C~~~cp~~~ 371 (388)
+|++||.|...||...
T Consensus 1 ~C~~Cg~C~~~CP~~~ 16 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYI 16 (61)
T ss_dssp T----STTGGGSHHHH
T ss_pred CCCCCCcCcccCCCcc
Confidence 5999999999999654
No 331
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=63.91 E-value=3.4 Score=47.04 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=21.6
Q ss_pred EecCCCccC----CcccccCCCCC-eeEECcC
Q 016489 352 INAQNCLHC----KACDIKDPKQN-IKWTVPE 378 (388)
Q Consensus 352 i~~~~C~~C----g~C~~~cp~~~-I~w~~p~ 378 (388)
-+.++|+.| |.|..+||.+| ++-.+|.
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g 914 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPG 914 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCC
Confidence 467899999 99999999999 4455543
No 332
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=62.88 E-value=3 Score=43.10 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=17.3
Q ss_pred EecCCCccCCcccccCCCCC
Q 016489 352 INAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.+...|++||.|..+||...
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l 379 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNL 379 (435)
T ss_pred ccCCcCcCccchhhhCccch
Confidence 45689999999999999864
No 333
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=62.75 E-value=2.8 Score=39.66 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=17.0
Q ss_pred ecCCCccCCcccccCCCCCe
Q 016489 353 NAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~I 372 (388)
....|+.||.|..+||.-..
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 142 GLYECILCACCSTACPSYWW 161 (235)
T ss_pred hhhhCcccccccccccCccc
Confidence 55789999999999997653
No 334
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=62.53 E-value=2.1e+02 Score=30.09 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=14.2
Q ss_pred eEEEecEEEecccCCC
Q 016489 17 VELRGRITLLAEGCRG 32 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s 32 (388)
.+|+|++||.|+|+.+
T Consensus 201 ~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 201 YTVRARALVNAAGPWV 216 (508)
T ss_pred EEEEcCEEEECCCccH
Confidence 4799999999999875
No 335
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.51 E-value=2e+02 Score=30.00 Aligned_cols=107 Identities=17% Similarity=0.030 Sum_probs=50.2
Q ss_pred eEEEEcCCCEEEEEEEEecCCC----CCCCCh---HHHHHHHHcCCCcccccCCCeeee--ecceeeccCCCcCCCcccc
Q 016489 91 SFLYHMNDRQIALGLVVALNYH----NPFLNP---YEEFQKFKHHPAIKPLLEGGTVVQ--YGARTLNEGGLQSIPYPVF 161 (388)
Q Consensus 91 gwiy~~~~~~vsVGlv~~l~~~----~~~~~~---~~~~~~~k~~P~i~~~l~~~~~~~--yga~~ip~gg~~~~p~~~~ 161 (388)
.|+.|..++.+-||.. +.++. ++..+. ..+++..... +.+-|....+++ .|.|.++..+...-.+...
T Consensus 261 ~~i~P~~~~~~liGtT-d~~~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR 337 (502)
T PRK13369 261 IFANPYEGDFTLIGTT-DIAYEGDPEDVAADEEEIDYLLDAANRY--FKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTR 337 (502)
T ss_pred EEEEEecCCEEEEEec-CccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCCHhHEEEEeeceEEcCCCCCCCcccCCc
Confidence 4778876666667753 22221 222332 2223333322 111234444443 3455544322111112333
Q ss_pred CCEEEEcc---CccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 162 PGGAIIGC---AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 162 ~g~lLvGD---AAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
+-.+..-. ..|+|+.. |.++...-.-|..+++.+.+.+.
T Consensus 338 ~~~i~~~~~~g~~gli~i~-Ggk~Tt~r~~Ae~v~d~~~~~l~ 379 (502)
T PRK13369 338 DYVFDLDAETGGAPLLSVF-GGKITTFRKLAEHALERLKPFFP 379 (502)
T ss_pred ceEEeeccccCCCCeEEEe-CChHhhHHHHHHHHHHHHHHhcC
Confidence 33443321 25676665 45677777777777777766653
No 336
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=62.51 E-value=2.7 Score=39.97 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=16.2
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
+.+.|+.||.|...||.-.
T Consensus 145 ~~~~CI~Cg~C~saCP~~~ 163 (244)
T PRK12385 145 QFSGCINCGLCYAACPQFG 163 (244)
T ss_pred HHHhcCcCccccCcCcCcc
Confidence 4579999999999999754
No 337
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=61.29 E-value=2.6 Score=42.05 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=17.9
Q ss_pred CCCccCCcccccCCCCCee
Q 016489 355 QNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~~I~ 373 (388)
+.|-.|..|..+||++||.
T Consensus 185 ~~Cg~C~~CldaCPt~Al~ 203 (337)
T COG1600 185 DHCGSCTRCLDACPTGALV 203 (337)
T ss_pred ccChhhHHHHhhCCccccc
Confidence 8899999999999999985
No 338
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=61.21 E-value=3.4 Score=40.09 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=15.8
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
....|+.||.|..+||.-.
T Consensus 185 ~~~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 185 GMYECILCACCSTSCPSYW 203 (276)
T ss_pred hhhhCccccccccccCCCc
Confidence 4578999999999999654
No 339
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=60.02 E-value=2.8 Score=40.86 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=18.6
Q ss_pred eEEEecCCCccCCcccccCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPK 369 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~ 369 (388)
.+.+|.++||.|+.|+.+|-.
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNE 226 (297)
T ss_pred ceeecCCcCcCccHHHHHHHH
Confidence 577889999999999999963
No 340
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=59.98 E-value=8.1 Score=39.00 Aligned_cols=38 Identities=18% Similarity=-0.165 Sum_probs=31.1
Q ss_pred cccCCEEEEccCccccCCCCccc-----hHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKG-----THTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 197 (388)
...+++..+||+|.+-+| +++- .++|+..|++||+.+.
T Consensus 265 ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 265 TCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred cCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 357999999999988887 5432 3789999999999875
No 341
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=58.64 E-value=4.1 Score=40.48 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.9
Q ss_pred cCCCccCCcccccCCCCC
Q 016489 354 AQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 354 ~~~C~~Cg~C~~~cp~~~ 371 (388)
..+|+.||.|..+||.-.
T Consensus 151 ~~~Ci~CG~C~s~CP~~~ 168 (329)
T PRK12577 151 TGNCILCGACYSECNARE 168 (329)
T ss_pred hhhCcccCcccccCCCCC
Confidence 578999999999999765
No 342
>PLN02976 amine oxidase
Probab=58.33 E-value=15 Score=43.54 Aligned_cols=54 Identities=20% Similarity=0.046 Sum_probs=38.8
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc-------CchHHHHHHHHH
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-------DSNMEIYWDTLQ 214 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~-------~~~l~~Y~~~~~ 214 (388)
+..+++++++|++...-.|-| ||-|+.||..||+.|+..+.. .++|+.+++..+
T Consensus 1147 ePVggRLFFAGEATS~~~pGT---VHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~ 1207 (1713)
T PLN02976 1147 RPVENCLFFAGEATCKEHPDT---VGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSE 1207 (1713)
T ss_pred CCCCCcEEEEehhhhCCCcch---HHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhh
Confidence 345567999999987655544 556999999999999998864 134555554443
No 343
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=58.28 E-value=5.7 Score=44.56 Aligned_cols=38 Identities=21% Similarity=0.584 Sum_probs=26.2
Q ss_pred CCCccccccCCceEEEecCC-C--CceeEEEecCCCccCCc
Q 016489 325 YAGPESRYCPARVYEYVPDE-K--NQLKLQINAQNCLHCKA 362 (388)
Q Consensus 325 ~~~~c~~~CPa~~y~~~~~~-~--~~~~~~i~~~~C~~Cg~ 362 (388)
|||.|+.+||+||+.-.... . ..+.+..-..-|.+|+.
T Consensus 193 ~~G~cv~vCP~GAl~~k~~~~~~~r~w~l~~~~s~C~~C~~ 233 (847)
T PRK08166 193 FSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCSV 233 (847)
T ss_pred hhCChHhhCCchhccccccccccCCCceeeEEEeeCCCCcC
Confidence 68999999999998754321 1 12455566677888765
No 344
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=57.73 E-value=3.5 Score=43.87 Aligned_cols=38 Identities=24% Similarity=-0.006 Sum_probs=29.8
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..+|+..+||++.- ..-+..|+..|+.||+.|.+.|.+
T Consensus 408 s~~~Vfa~GD~~~g-----~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 408 GRPGVFAGGDMVPG-----PRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCCEEeccCcCCC-----chHHHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999752 134678999999999999887754
No 345
>PLN02612 phytoene desaturase
Probab=57.25 E-value=12 Score=39.87 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=30.8
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.+|+.++||....-- ..+++-|+.||+.||+.|.+.+.
T Consensus 512 i~~l~lAGd~t~~~~---~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 512 IEGFYLAGDYTKQKY---LASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred cCCEEEeecceeCCc---hhhHHHHHHHHHHHHHHHHHHhc
Confidence 478999999975432 34899999999999999987663
No 346
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=57.13 E-value=3.8 Score=38.91 Aligned_cols=19 Identities=16% Similarity=0.551 Sum_probs=16.2
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
....|+.||.|..+||.-+
T Consensus 147 ~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred chhhccccchhHhhCCCCc
Confidence 5679999999999999544
No 347
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=56.64 E-value=17 Score=37.04 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=33.3
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..|++..+||++.+-++....=...|+..|..||+.|...+.+
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999755322223467999999999999888754
No 348
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=55.99 E-value=4.3 Score=38.22 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=16.4
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
+...|+.||.|...||.-.
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 139 GLYECILCACCSTSCPSFW 157 (232)
T ss_pred hHHhccccccccccCCccc
Confidence 5579999999999999654
No 349
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=55.73 E-value=16 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.5
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
+++.++|+. +.+.||.-|+.||+.||+.|++.++
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHHHhh
Confidence 799999999 3466899999999999999987663
No 350
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=55.05 E-value=3.6 Score=42.09 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=13.1
Q ss_pred CCccCCcccccCCC
Q 016489 356 NCLHCKACDIKDPK 369 (388)
Q Consensus 356 ~C~~Cg~C~~~cp~ 369 (388)
+||.||+|...||.
T Consensus 309 ~CIRCGaC~n~CPv 322 (459)
T COG1139 309 RCIRCGACLNHCPV 322 (459)
T ss_pred HhhcchHhhhcChh
Confidence 79999999999994
No 351
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=53.65 E-value=4.4 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=18.9
Q ss_pred eeEEEecCCCccCCcccccCC
Q 016489 348 LKLQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp 368 (388)
..+..|.++||+||.|+..|-
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred cceeecccccccCcHHHHHHH
Confidence 368889999999999999995
No 352
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=53.36 E-value=5.1 Score=45.75 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.6
Q ss_pred ecCCCcc----CCcccccCCCCCe
Q 016489 353 NAQNCLH----CKACDIKDPKQNI 372 (388)
Q Consensus 353 ~~~~C~~----Cg~C~~~cp~~~I 372 (388)
+.++|+. ||.|..+||.+||
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Ai 902 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRAN 902 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhh
Confidence 4489996 9999999999985
No 353
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=53.33 E-value=5.9 Score=43.71 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.1
Q ss_pred EEEecCCCccCCcccccCCCCC
Q 016489 350 LQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 350 ~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+....++|++|+.|..+||.+.
T Consensus 399 l~~eadrCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 399 LKELAKKCTECGWCVRVCPNEL 420 (781)
T ss_pred HHHhhhhCcCCCCccccCCCCc
Confidence 3345689999999999999864
No 354
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=53.14 E-value=2.8 Score=42.99 Aligned_cols=41 Identities=27% Similarity=0.101 Sum_probs=33.8
Q ss_pred ccCCEEEEccCccccCCCCc----cchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFLNVPKI----KGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~----~Gi~~Am~SG~lAAeai~~al 200 (388)
++.|+-++||||+|.|+.-| +--.+|..||+||+|-...|-
T Consensus 476 ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 476 ARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred cccceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence 57889999999999999644 455789999999999776544
No 355
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=53.13 E-value=4.9 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.1
Q ss_pred EecCCCccCCcccccCCCCC
Q 016489 352 INAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~ 371 (388)
...++|++||.|...||...
T Consensus 396 ~~~~kCI~CG~Cv~aCP~~l 415 (784)
T TIGR00314 396 ELANKCTQCGNCVRTCPNSL 415 (784)
T ss_pred hhcccCCCcccchhhCCCCc
Confidence 34589999999999999873
No 356
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=52.87 E-value=2.5e+02 Score=28.06 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=17.0
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 016489 178 KIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 178 ~~~Gi~~Am~SG~lAAeai~~ 198 (388)
.+.|+..|...|++.|+.|..
T Consensus 385 ~~~G~~~ap~~g~~lA~~i~~ 405 (410)
T PRK12409 385 GHLGWTLSAATADLVAQVVAQ 405 (410)
T ss_pred cccchhhcccHHHHHHHHHcC
Confidence 456999999999999987753
No 357
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=52.35 E-value=5.1 Score=37.93 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=16.2
Q ss_pred ecCCCccCCcccccCCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~ 371 (388)
....||.||.|..+||.-.
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~ 158 (234)
T COG0479 140 ELSECILCGCCTAACPSIW 158 (234)
T ss_pred hhhhccccchhhhhCCccc
Confidence 5689999999999999543
No 358
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=52.32 E-value=5.7 Score=30.10 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCCCCcccCCCCCCCccccccCCce
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARV 337 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~ 337 (388)
....|++| |.|+++||++.
T Consensus 48 ~~~~CVgC------grCv~~CP~~I 66 (69)
T PF13746_consen 48 GEGDCVGC------GRCVRVCPAGI 66 (69)
T ss_pred CCccCCCc------ChHhhhcCCCC
Confidence 45679997 79999999975
No 359
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=51.93 E-value=6.6 Score=33.82 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.4
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEec
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVP 342 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 342 (388)
.|++.|..| +.|+.+||.+++++..
T Consensus 42 id~~~C~~C------g~Cv~~CP~~AI~~~~ 66 (132)
T TIGR02060 42 IEPDMCWEC------YSCVKACPQGAIDVRG 66 (132)
T ss_pred cCchhCccH------HHHHHhCCcCceEEEC
Confidence 477899887 6899999999999864
No 360
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=51.79 E-value=8.6 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=19.7
Q ss_pred eEEEecCCCccCCcccc--cCCC
Q 016489 349 KLQINAQNCLHCKACDI--KDPK 369 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~--~cp~ 369 (388)
++.+|.+.|+.|+.|.. .||.
T Consensus 544 ~~~id~~~C~~C~~C~~~~~CP~ 566 (595)
T TIGR03336 544 PYKVDQDKCIGCKKCIKELGCPA 566 (595)
T ss_pred eEEEcCCcCCCccccccccCCCC
Confidence 78999999999999999 9994
No 361
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=51.62 E-value=6.9 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEEecCCCccCCcccccCCCCC
Q 016489 349 KLQINAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 349 ~~~i~~~~C~~Cg~C~~~cp~~~ 371 (388)
.+.....+|++||.|...||.+.
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNSL 381 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCCC
Confidence 34556689999999999999874
No 362
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=51.23 E-value=6.5 Score=41.06 Aligned_cols=20 Identities=20% Similarity=0.717 Sum_probs=17.2
Q ss_pred ecCCCccCCcccccCCCCCe
Q 016489 353 NAQNCLHCKACDIKDPKQNI 372 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~~I 372 (388)
....|++||.|...||.-..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~ 150 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKV 150 (486)
T ss_pred CchhcccCccccccCCCCcc
Confidence 45899999999999997763
No 363
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=51.12 E-value=6.1 Score=41.02 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=15.3
Q ss_pred ecCCCccCCcccccCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~ 370 (388)
....|+.||.|..+||.+
T Consensus 371 ~~~aCI~CG~C~~vCPm~ 388 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLD 388 (447)
T ss_pred CccceeECChHhhcCCCC
Confidence 346699999999999965
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.97 E-value=21 Score=36.98 Aligned_cols=39 Identities=21% Similarity=-0.101 Sum_probs=31.3
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
...+|+..+||+++- | .-+..|+..|+.||..|.+.|.+
T Consensus 428 Ts~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 428 TSNPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999971 1 23678999999999999888754
No 365
>PLN02268 probable polyamine oxidase
Probab=50.74 E-value=16 Score=37.05 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=29.2
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
+++.++|++.....+ .=|+-|+.||+.||+.|.++|
T Consensus 399 ~~l~FAGe~ts~~~~---g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 399 DNLFFAGEATSSDFP---GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCeEEeeccCCCccc---ccHHHHHHHHHHHHHHHHHhh
Confidence 479999999876544 346679999999999998765
No 366
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=50.60 E-value=20 Score=36.23 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHH
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
.+++.++||.- .+-||.-||.||+.||+.|.+
T Consensus 419 ~~~l~~aG~~~------~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 419 YPGLYVAGASF------EGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCEEEECccc------CCccHHHHHHHHHHHHHHHHh
Confidence 35999999973 356899999999999998864
No 367
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=49.85 E-value=25 Score=36.10 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=35.5
Q ss_pred cccCCEEEEccCccccC----CCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLN----VPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vd----p~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
...++++.+||.|.+.+ |.+.+ .|+..|..+|+.|.+.+++
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ---~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQ---AAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhH---HHHHHHHHHHHHHHHHhcC
Confidence 45788999999999998 57777 6999999999999988875
No 368
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=49.66 E-value=21 Score=37.11 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=29.5
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
--+|+.|+|+++ .| |.|+..+|.||+.||+.|...
T Consensus 457 ~i~gLyl~G~~~---~p--G~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 457 AIPGLYCVGDSC---FP--GQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCeEEecCcC---CC--CCCHHHHHHHHHHHHHHHHhh
Confidence 357999999886 23 789999999999999998753
No 369
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=49.40 E-value=19 Score=27.00 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=5.8
Q ss_pred cCCCCCeeE
Q 016489 366 KDPKQNIKW 374 (388)
Q Consensus 366 ~cp~~~I~w 374 (388)
.||.+||++
T Consensus 53 ~CPSGAL~~ 61 (64)
T PF06902_consen 53 RCPSGALSY 61 (64)
T ss_pred cCCccCcEE
Confidence 567777663
No 370
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=49.31 E-value=5.7 Score=42.72 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=19.0
Q ss_pred eeEEEecCCCccCCcccccCC
Q 016489 348 LKLQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 348 ~~~~i~~~~C~~Cg~C~~~cp 368 (388)
+.+..|.++||.|+.|+..|-
T Consensus 135 p~i~~d~~rCI~C~rCvr~c~ 155 (603)
T TIGR01973 135 PLIKTEMTRCIHCTRCVRFAN 155 (603)
T ss_pred CCeEecCCcCccccHHHHHHH
Confidence 368899999999999999995
No 371
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=49.27 E-value=23 Score=36.22 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.+|+.++||.- .+-||.-||.||+.||+.+.+++
T Consensus 427 ~~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 427 YPGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CCCEEEecccc------CCCcHHHHHHHHHHHHHHHHHhh
Confidence 46999999883 35699999999999999998765
No 372
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.78 E-value=26 Score=34.71 Aligned_cols=36 Identities=25% Similarity=0.083 Sum_probs=29.3
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..+++.++||+++- |. =+..|+..|..||..|.+.|
T Consensus 314 ~~~~vyaiGD~~~~--~~---~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 314 SREGVFAAGDVVTG--PS---KIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCCEEEEcccccC--cc---hHHHHHHHHHHHHHHHHHHH
Confidence 46899999999863 21 37899999999999998766
No 373
>PRK12831 putative oxidoreductase; Provisional
Probab=48.02 E-value=26 Score=36.41 Aligned_cols=38 Identities=26% Similarity=-0.025 Sum_probs=30.7
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
...+|+..+||+++- | .-+..|+..|+.||.+|.+.|.
T Consensus 424 Ts~pgVfAaGD~~~g--~---~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTG--A---ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCC--c---hHHHHHHHHHHHHHHHHHHHhc
Confidence 346999999999752 1 2478999999999999988774
No 374
>PRK06175 L-aspartate oxidase; Provisional
Probab=47.99 E-value=48 Score=34.03 Aligned_cols=42 Identities=10% Similarity=-0.111 Sum_probs=33.3
Q ss_pred cccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
-.-||+..+|.+++ +- |-+.+.++..++..|++||+.|...+
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999974 32 34567778999999999999987655
No 375
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=47.65 E-value=15 Score=37.42 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=30.7
Q ss_pred cccCCEEEEccCccccCCCCccc-----hHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKG-----THTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 197 (388)
...+++..+||++++.++.+++- -+.|+..|+.||+.+.
T Consensus 272 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 272 TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 35799999999999877665432 3679999999998775
No 376
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=47.54 E-value=25 Score=36.26 Aligned_cols=38 Identities=26% Similarity=0.066 Sum_probs=30.5
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..+++..+||+++ + ..-+..|+..|+.||+.|.+.|.+
T Consensus 416 s~~~VfA~GD~~~---~--~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 416 SLPGVFAGGDIVT---G--AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCCEEEeCCcCC---C--chHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999983 1 135678999999999999887754
No 377
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=46.84 E-value=22 Score=40.58 Aligned_cols=57 Identities=21% Similarity=0.038 Sum_probs=41.2
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQ 223 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~s~~~~el~ 223 (388)
.-+|+..+||++.- ..=+..|+..|+.||++|.+.|.-. ...|...++..|-+.|+.
T Consensus 591 s~pgVFAaGD~~~G-----~~~vv~Ai~eGr~AA~~I~~~L~~~--~~~~~~~~~~~~~yt~~~ 647 (944)
T PRK12779 591 SIKGVYSGGDAARG-----GSTAIRAAGDGQAAAKEIVGEIPFT--PAEIKDRVERAARYTELG 647 (944)
T ss_pred CCCCEEEEEcCCCC-----hHHHHHHHHHHHHHHHHHHHHhccc--ccchhhhcchHhhhhhcc
Confidence 56899999999852 1136789999999999999888642 334555566666666553
No 378
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=46.70 E-value=11 Score=41.98 Aligned_cols=42 Identities=19% Similarity=0.489 Sum_probs=26.5
Q ss_pred CCCCccccccCCceEEEecCC-CC-ceeEEEecCCCccCCc-ccc
Q 016489 324 EYAGPESRYCPARVYEYVPDE-KN-QLKLQINAQNCLHCKA-CDI 365 (388)
Q Consensus 324 ~~~~~c~~~CPa~~y~~~~~~-~~-~~~~~i~~~~C~~Cg~-C~~ 365 (388)
++||.|+.+||.|++...+-. .. .+.+..-..-|.+|+. |-+
T Consensus 193 ~~cG~cv~vCP~GAl~~k~~~~~~r~w~l~~~~SvC~~C~~GC~l 237 (797)
T PRK07860 193 YFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASGCAQ 237 (797)
T ss_pred cccCCchhhCCcccccccccccccCcccceecceeCCCCCCCCCe
Confidence 358999999999998643210 11 1234445577888884 543
No 379
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=46.57 E-value=13 Score=40.79 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCCccccccCCceEEEecCC-CC-ceeEEEecCCCccCCcc
Q 016489 324 EYAGPESRYCPARVYEYVPDE-KN-QLKLQINAQNCLHCKAC 363 (388)
Q Consensus 324 ~~~~~c~~~CPa~~y~~~~~~-~~-~~~~~i~~~~C~~Cg~C 363 (388)
++||.|+.+||+|++...+-. .. .+.+.--..-|.+|+..
T Consensus 188 ~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vG 229 (687)
T PRK09130 188 ELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVG 229 (687)
T ss_pred cccccHHhhCCCccccccccccccCcceeeeccccCCCCCCC
Confidence 357999999999998743310 11 13455556789999875
No 380
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=46.00 E-value=8.3 Score=40.06 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=15.7
Q ss_pred ecCCCccCCcccccCCCC
Q 016489 353 NAQNCLHCKACDIKDPKQ 370 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~cp~~ 370 (388)
..+.|+.||.|..+||.+
T Consensus 372 ~~~~CI~Cg~C~~vCP~~ 389 (448)
T PRK05352 372 SERAMVPIGNYERVMPLD 389 (448)
T ss_pred CCcceeecCcHhhcCCCC
Confidence 457899999999999973
No 381
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=45.93 E-value=12 Score=37.41 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=20.4
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEE
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEY 340 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~ 340 (388)
..|++.|+.| +.|..+||+++++.
T Consensus 210 ~id~~~Ci~C------g~Ci~~CP~~a~~~ 233 (341)
T TIGR02066 210 EVDVEKCIYC------GNCYTMCPAMPIFD 233 (341)
T ss_pred eeccccCCcC------CchHHhCchhhccC
Confidence 4488999997 89999999999763
No 382
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=45.72 E-value=19 Score=33.91 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
..|+||+||+|+|-.+.+.+.+.+|..+.
T Consensus 150 l~i~ak~ViDaTGHda~v~~~~~kk~~~~ 178 (230)
T PF01946_consen 150 LTIRAKVVIDATGHDAEVVRVLAKKLKLL 178 (230)
T ss_dssp EEEEESEEEE---SSSSSTSHHHHHHHHT
T ss_pred ceEEEeEEEeCCCCchHHHHHHHHHhhhc
Confidence 48999999999999999999888776443
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=45.50 E-value=13 Score=40.12 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.4
Q ss_pred eEecCCCCCcccCCCCCCCccccccCCceEEEec
Q 016489 309 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVP 342 (388)
Q Consensus 309 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 342 (388)
.-++..+.|++| |.|+.-||-+|+++..
T Consensus 43 ~~~~~e~~c~~c------~~c~~~cp~~a~~i~~ 70 (590)
T PRK13409 43 KPVISEELCIGC------GICVKKCPFDAISIVN 70 (590)
T ss_pred CceeeHhhcccc------ccccccCCcceEEEee
Confidence 334577999997 8999999999999864
No 384
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.29 E-value=28 Score=36.33 Aligned_cols=40 Identities=23% Similarity=-0.015 Sum_probs=31.8
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
+..-+|+..+||+++- ..-+..|+..|+.||..|.+.|.+
T Consensus 441 ~Ts~~gVfAaGD~~~g-----~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 441 STSIPGVFAAGDCRRG-----QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred eECCCCEEEeeccCCC-----cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999752 124677999999999999988854
No 385
>PLN02487 zeta-carotene desaturase
Probab=44.80 E-value=1e+02 Score=33.11 Aligned_cols=39 Identities=15% Similarity=-0.087 Sum_probs=31.4
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
...+|+.|+||=--.--|- .|..|+.||..||+.|.++.
T Consensus 515 T~~~nl~LAGD~t~~~yPa---t~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 515 TPISNFFLAGSYTKQDYID---SMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCCCEEEeCcccccCCcc---hHHHHHHHHHHHHHHHHHHh
Confidence 3348999999977776664 67779999999999887654
No 386
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=42.94 E-value=30 Score=35.85 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.7
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
--+|+.|+|+++ .| |.|+..++.||+.||+.|.+
T Consensus 457 ~i~gLyl~G~~~---~p--G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 457 PVKGLWLCGDSI---HP--GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCeEEecCcc---CC--CCcHHHHHHHHHHHHHHHhh
Confidence 347999999987 33 78999999999999999864
No 387
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.18 E-value=33 Score=35.41 Aligned_cols=36 Identities=25% Similarity=0.022 Sum_probs=28.4
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..+|+..+||+++- | .=+..||..|+.||+.|.+.|
T Consensus 414 s~~~VfA~GD~~~g--~---~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 414 SIPGVFAGGDIILG--A---ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCCEEEecCCCCC--c---HHHHHHHHHHHHHHHHHHhhC
Confidence 46899999999851 1 246789999999999987653
No 388
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=41.42 E-value=36 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=30.1
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
-+|+.|+|++. . -|.|+..|+.||+.||+.|.+-+.
T Consensus 458 i~gLyl~G~~~---~--pG~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 458 IDNLYLVGAGT---H--PGAGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCCEEEeCCCC---C--CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 57999999885 2 378999999999999999976543
No 389
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=40.92 E-value=4.7e+02 Score=27.74 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=19.1
Q ss_pred eEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 17 VELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 17 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
.+|+|++||.|.|+.+ .+|.+.+++.
T Consensus 196 ~~i~A~~VVnAaG~wa---~~l~~~~g~~ 221 (546)
T PRK11101 196 QEIHAPVVVNAAGIWG---QHIAEYADLR 221 (546)
T ss_pred EEEECCEEEECCChhH---HHHHHhcCCC
Confidence 5799999999999875 4444445544
No 390
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.61 E-value=36 Score=38.96 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.0
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..+|+.++||++|. .++..|+.+|.+||.+|...+..
T Consensus 437 ~v~gVyaaGD~~g~------~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 437 AVQGCILAGAANGL------FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCeEEeeccCCc------cCHHHHHHHHHHHHHHHHHHcCC
Confidence 36899999999985 48999999999999999887753
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=39.81 E-value=14 Score=38.57 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.1
Q ss_pred ecCCCCCcccCCCCCCCccccccCCceEEEec
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARVYEYVP 342 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 342 (388)
++..+.|++| |.|++-||-+||++..
T Consensus 46 vIsE~lCiGC------GICvkkCPF~AI~Ivn 71 (591)
T COG1245 46 VISEELCIGC------GICVKKCPFDAISIVN 71 (591)
T ss_pred eeEhhhhccc------hhhhccCCcceEEEec
Confidence 3456899997 8999999999999864
No 392
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=39.80 E-value=30 Score=37.04 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=31.4
Q ss_pred ccCCEEEEc-cCccccC---CCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIG-CAAGFLN---VPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvG-DAAG~vd---p~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+| +++|+.. |..|-.+..||.+|++||+.+.+.+.
T Consensus 527 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 527 PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 358899999 5666653 34455688899999999999976553
No 393
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=39.60 E-value=99 Score=29.22 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=44.0
Q ss_pred cceeEEEEcCCCEEEEEEEEecCCCCCCCChHHHHHHHHcCCCcccccC-CCeeeeecceeeccCCCcCCCccccCCEEE
Q 016489 88 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLE-GGTVVQYGARTLNEGGLQSIPYPVFPGGAI 166 (388)
Q Consensus 88 ~Gggwiy~~~~~~vsVGlv~~l~~~~~~~~~~~~~~~~k~~P~i~~~l~-~~~~~~yga~~ip~gg~~~~p~~~~~g~lL 166 (388)
+|-..||+++. ..+|=.+.-...--..+..++.+.++.|-.+-+--+ +|-++..++-++-.|.. .-.++..|
T Consensus 115 ~g~~~IyTLGG--y~vGkl~eep~VlGA~ts~eLi~~lke~gV~fr~~epgGgIVGasGLllg~g~l-----~gm~gaCL 187 (258)
T COG2047 115 FGARMIYTLGG--YGVGKLVEEPRVLGAVTSKELIEELKEHGVEFRSGEPGGGIVGASGLLLGFGEL-----RGMDGACL 187 (258)
T ss_pred cCCcEEEEecC--cccCcccCCceeEEecCCHHHHHHHHHcCeEeccCCCCCceechhhhhhhhhhh-----cCCCceee
Confidence 45568888753 444433321110011345677888887743322222 23444433333333322 23689999
Q ss_pred EccCccc-cCC
Q 016489 167 IGCAAGF-LNV 176 (388)
Q Consensus 167 vGDAAG~-vdp 176 (388)
.|..-|. +||
T Consensus 188 MGeT~GY~vDp 198 (258)
T COG2047 188 MGETPGYLVDP 198 (258)
T ss_pred ccCCCccccCh
Confidence 9999997 588
No 394
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.59 E-value=35 Score=36.16 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=34.2
Q ss_pred cccCCEEEEccCcccc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 159 PVFPGGAIIGCAAGFL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
-.=||+..+|+++|-+ |-+.+..+..|+.+|++||+.+.+.+.
T Consensus 359 t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 359 TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 3579999999987654 345677888999999999999976553
No 395
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=39.23 E-value=16 Score=32.38 Aligned_cols=14 Identities=43% Similarity=1.044 Sum_probs=11.6
Q ss_pred ecCCCccCCccccc
Q 016489 353 NAQNCLHCKACDIK 366 (388)
Q Consensus 353 ~~~~C~~Cg~C~~~ 366 (388)
+-.+|.+||.|.+.
T Consensus 63 ~g~~C~~Cg~C~Ig 76 (158)
T PF01976_consen 63 DGYNCKRCGKCDIG 76 (158)
T ss_pred CCCcCCCCCCCchh
Confidence 45899999999875
No 396
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=38.64 E-value=39 Score=37.38 Aligned_cols=38 Identities=26% Similarity=-0.008 Sum_probs=30.9
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
...+|+..+||++.- ..-+..|+..|+.||..|.+.|.
T Consensus 713 Ts~~gVfA~GD~~~g-----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRG-----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCC-----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999852 12478999999999999988774
No 397
>PRK10262 thioredoxin reductase; Provisional
Probab=38.42 E-value=20 Score=34.80 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=30.6
Q ss_pred ccccCCEEEEccCccc-cCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 158 YPVFPGGAIIGCAAGF-LNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~-vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
+...||+..+||+++. .+..+ .|+-.|..||.+|.+.|+.
T Consensus 276 ~t~~~~VyA~GD~~~~~~~~~~-----~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 276 QTSIPGVFAAGDVMDHIYRQAI-----TSAGTGCMAALDAERYLDG 316 (321)
T ss_pred ccCCCCEEECeeccCCCcceEE-----EEehhHHHHHHHHHHHHHh
Confidence 4467999999999964 33332 2899999999999887754
No 398
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=38.37 E-value=5.5e+02 Score=27.84 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=14.2
Q ss_pred EEEecEEEecccCCCc
Q 016489 18 ELRGRITLLAEGCRGS 33 (388)
Q Consensus 18 ~i~Ak~vI~AdG~~s~ 33 (388)
+++|+.||.|.|+.+.
T Consensus 282 ~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 282 DVYAKVVVNAAGPFCD 297 (627)
T ss_pred EEEeCEEEECCCHhHH
Confidence 6899999999999863
No 399
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=38.29 E-value=31 Score=35.00 Aligned_cols=38 Identities=26% Similarity=0.098 Sum_probs=29.8
Q ss_pred ccCCEEEEccCccccCCCCccc-----hHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKG-----THTAMKSGMLAAEAGF 197 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~G-----i~~Am~SG~lAAeai~ 197 (388)
..+++..+||+++.-++.+++. .+.|+..|+.||+.+.
T Consensus 260 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 260 SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 4689999999999877765542 3678888888888774
No 400
>PLN02676 polyamine oxidase
Probab=37.32 E-value=36 Score=35.62 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=31.0
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
+++.++|++.....+-+ |+-|+.||+.||+.|.+.+..
T Consensus 438 gri~FAGe~ts~~~~g~---~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 438 GRVYFTGEHTSEKYNGY---VHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CceEEeccccccccccc---hHHHHHHHHHHHHHHHHHhcc
Confidence 58999999987655544 556999999999999988864
No 401
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=36.24 E-value=10 Score=42.07 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEec
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYVP 342 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 342 (388)
.|+..|..|.---++|.|+..||++-|-+..
T Consensus 247 ~dptaC~aCr~~y~~G~CV~~Cp~~~Y~~e~ 277 (1025)
T KOG4258|consen 247 NDPTACVACRGLYDDGVCVEACPPDYYLFEN 277 (1025)
T ss_pred CChhHhHHhhccccCCceeccCCcchhhhcc
Confidence 3567777775545679999999999886643
No 402
>PLN02661 Putative thiazole synthesis
Probab=35.94 E-value=43 Score=33.79 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=28.9
Q ss_pred cccCCEEEEccCccccC------CCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLN------VPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vd------p~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
-+.||+++.|=|+.-++ |++| | =+.||+.|||.|.+.|+.
T Consensus 284 ev~pgl~~~gm~~~~~~g~~rmgp~fg-~---m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 284 EVVPGMIVTGMEVAEIDGSPRMGPTFG-A---MMISGQKAAHLALKALGL 329 (357)
T ss_pred cccCCEEEeccchhhhcCCCccCchhH-h---HHhhhHHHHHHHHHHHcc
Confidence 35777777777777765 3332 3 367999999999998864
No 403
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=35.89 E-value=15 Score=37.98 Aligned_cols=51 Identities=6% Similarity=-0.117 Sum_probs=39.0
Q ss_pred CCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 016489 313 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 373 (388)
Q Consensus 313 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg~C~~~cp~~~I~ 373 (388)
-...|++| ++|++-||-.++.+..- +.-.+..-.|..|+.|...|+..+.+
T Consensus 48 se~lCigc------gicvkkcpf~ai~iinl----p~nl~~etthry~~n~fKlhrlp~pr 98 (592)
T KOG0063|consen 48 SEELCIGC------GICVKKCPFEAIQIINL----PTNLEKETTHRYSANSFKLHRLPIPR 98 (592)
T ss_pred hHhhhccc------cceeeccCcceEEecCC----chhHhhhhhhhhcccceeeccCCCCC
Confidence 45788887 79999999999987643 12344556799999999999876644
No 404
>PLN02576 protoporphyrinogen oxidase
Probab=35.86 E-value=50 Score=34.19 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
+|+.++||.-. +-||.-||.||+.||+.|.+.+.
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHHh
Confidence 79999999886 45999999999999999987654
No 405
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.48 E-value=32 Score=32.70 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCCCeeeeeeecCeEEEecEEEecccCCC
Q 016489 3 IAKDGSKKENFQRGVELRGRITLLAEGCRG 32 (388)
Q Consensus 3 ~~~dG~~~~~~~~g~~i~Ak~vI~AdG~~s 32 (388)
++..++|..++++..+++|+.||.|+|+.+
T Consensus 95 v~~sskpF~l~td~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 95 VDLSSKPFKLWTDARPVTADAVILATGASA 124 (322)
T ss_pred ccccCCCeEEEecCCceeeeeEEEecccce
Confidence 567789999999999999999999999863
No 406
>PLN02529 lysine-specific histone demethylase 1
Probab=35.18 E-value=29 Score=38.45 Aligned_cols=39 Identities=23% Similarity=0.079 Sum_probs=31.7
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
..+++.++||+.....|-+. +-|+.||+.||+.|.+++.
T Consensus 561 v~grL~FAGEaTs~~~pgtV---eGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 561 VSGRLFFAGEATTRQYPATM---HGAFLSGLREASRILHVAR 599 (738)
T ss_pred CCCCEEEEEHHHhCCCCeEe---HHHHHHHHHHHHHHHHHHh
Confidence 34689999999877666554 5599999999999988764
No 407
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=33.90 E-value=13 Score=37.99 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=19.9
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEe
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYV 341 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~ 341 (388)
.|.+.|..| +.|+.+||.++++..
T Consensus 36 i~~~~C~~C------~~C~~~CP~~AI~~~ 59 (411)
T TIGR03224 36 VKADVCNGC------MACVSPCPTGAIDNW 59 (411)
T ss_pred eCcccCcCH------HHHHhhcCcccceec
Confidence 467889876 689999999999854
No 408
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=33.76 E-value=40 Score=35.05 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=28.4
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAG 196 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 196 (388)
...+|+.|+||--..-=| ..|..|+.||..||++|
T Consensus 439 t~~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 439 TPISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 345899999997766555 47778999999999976
No 409
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=33.69 E-value=15 Score=40.26 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=27.7
Q ss_pred CCCCccccccCCceEEEecCC--CCceeEEEecCCCccCCccc
Q 016489 324 EYAGPESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKACD 364 (388)
Q Consensus 324 ~~~~~c~~~CPa~~y~~~~~~--~~~~~~~i~~~~C~~Cg~C~ 364 (388)
++||.|+.+||+||+....-+ .-.+.+.--..-|.||-.+.
T Consensus 187 e~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~ 229 (693)
T COG1034 187 ELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGC 229 (693)
T ss_pred ccccceeeeccccccccChHHhhhccchhccCceeeccCcccc
Confidence 457999999999998754321 11234555567788887764
No 410
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.69 E-value=52 Score=35.62 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=34.9
Q ss_pred cccCCEEEEccCcccc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 159 PVFPGGAIIGCAAGFL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
..-||+..+|++||-+ |-+-+..+..|+..|++||+.+.+.++
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 3579999999987655 456778899999999999999876553
No 411
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=33.44 E-value=13 Score=40.83 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.5
Q ss_pred ceeEEEecCCCccCCcccccCC
Q 016489 347 QLKLQINAQNCLHCKACDIKDP 368 (388)
Q Consensus 347 ~~~~~i~~~~C~~Cg~C~~~cp 368 (388)
++-+..|...||-||.|+.+|-
T Consensus 141 ~Pfy~ydp~qCIlCgRCVeaCq 162 (978)
T COG3383 141 NPFYIYDPNQCILCGRCVEACQ 162 (978)
T ss_pred CCeEEecchheeehhHHHHHHH
Confidence 3478889999999999999996
No 412
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=33.04 E-value=52 Score=34.55 Aligned_cols=41 Identities=17% Similarity=0.005 Sum_probs=32.2
Q ss_pred ccCCEEEEccCcccc---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFL---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.=||+..+|.++|-+ +.+.+-.+..||.+|++|++.+.+..
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 468899999976654 34567778899999999999987644
No 413
>PRK08401 L-aspartate oxidase; Provisional
Probab=32.88 E-value=47 Score=34.43 Aligned_cols=41 Identities=24% Similarity=0.107 Sum_probs=32.5
Q ss_pred cccCCEEEEccCc--ccc--CCCCccchHHHHHHHHHHHHHHHHh
Q 016489 159 PVFPGGAIIGCAA--GFL--NVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 159 ~~~~g~lLvGDAA--G~v--dp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
..-||+..+|++| |+- |-+.+.++..++..|++||+++.+.
T Consensus 321 t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 321 TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 4579999999987 432 3466778888999999999998664
No 414
>PLN02568 polyamine oxidase
Probab=32.84 E-value=47 Score=35.36 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=28.8
Q ss_pred CEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 163 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 163 g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
+++.+|.|...-.+-| ||-|+.||+.||+.|++..
T Consensus 501 ~l~FAGEat~~~~~~T---v~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 501 QLLFAGEATHRTHYST---THGAYFSGLREANRLLQHY 535 (539)
T ss_pred cEEEeecccCCCccch---HHHHHHHHHHHHHHHHHHh
Confidence 6999999987765543 6679999999999998764
No 415
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=32.69 E-value=6.4e+02 Score=26.95 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=74.8
Q ss_pred CCCCeeeeeeec----C--eEEEecEEEecccCCCccchhHHHhcCCCcccCCCCceEEEEEEEE-EecCCCCCCCCcEE
Q 016489 4 AKDGSKKENFQR----G--VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEV-WEIDEGKHNPGEIL 76 (388)
Q Consensus 4 ~~dG~~~~~~~~----g--~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~lgvke~-~~~~~~~~~~g~v~ 76 (388)
.++|.+.++... | .+|+|+.||-|.|+.+ .++++..++.. ...+ . ....|-+ +-++. .+.....+
T Consensus 191 ~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~---d~i~~~~~~~~--~~~~-~-vr~skGsHlVv~~-~~~~~~a~ 262 (532)
T COG0578 191 RREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV---DEILEMAGLEQ--SPHI-G-VRPSKGSHLVVDK-KFPINQAV 262 (532)
T ss_pred eecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH---HHHHHhhcccC--CCCc-c-ceeccceEEEecc-cCCCCceE
Confidence 344445555422 2 3699999999999875 55544455541 1110 1 1111211 12233 22211112
Q ss_pred EEcCCCCCCCCcceeEEEEcCCCEEEEEEEEecCCC----CCCCChHH---HHHHHHcCCCcccccCCCeeee--eccee
Q 016489 77 HTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH----NPFLNPYE---EFQKFKHHPAIKPLLEGGTVVQ--YGART 147 (388)
Q Consensus 77 ~~~G~p~~~~~~Gggwiy~~~~~~vsVGlv~~l~~~----~~~~~~~~---~~~~~k~~P~i~~~l~~~~~~~--yga~~ 147 (388)
.+. .+.+... -|+.|..+ .+-||. ++.+|. ++..+..+ +++... -++.+.+....++. +|.|.
T Consensus 263 ~~~-~~~d~r~---~f~iP~~~-~~liGT-TD~~~~~~~~~~~~~~eEidyll~~~~--~~~~~~l~~~dI~~syaGVRP 334 (532)
T COG0578 263 INR-CRKDGRI---VFAIPYEG-KTLIGT-TDTDYDGDPEDPRITEEEIDYLLDAVN--RYLAPPLTREDILSTYAGVRP 334 (532)
T ss_pred Eee-cCCCCce---EEEecCCC-CEEeec-cccccCCCcccCCCCHHHHHHHHHHHH--hhhhccCChhheeeeeeeeee
Confidence 111 1111111 26667654 446666 344443 33344322 223222 12334444444443 45665
Q ss_pred eccCCCcCCCccccCCEEEEccC--ccccCCCCccchHH
Q 016489 148 LNEGGLQSIPYPVFPGGAIIGCA--AGFLNVPKIKGTHT 184 (388)
Q Consensus 148 ip~gg~~~~p~~~~~g~lLvGDA--AG~vdp~~~~Gi~~ 184 (388)
+...+-. -++-..-+..|.-++ +|++..+-|+=+.+
T Consensus 335 L~~~~~~-~~~~isR~~~l~~~~~~~glltv~GGKlTTy 372 (532)
T COG0578 335 LVDDGDD-DTSAISRDHVLFDHAELAGLLTVAGGKLTTY 372 (532)
T ss_pred ccCCCCC-chhhccCceEEEecCCCCCeEEEecchhHHh
Confidence 5553332 234445556666666 88888876663333
No 416
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=32.47 E-value=59 Score=33.78 Aligned_cols=36 Identities=25% Similarity=-0.002 Sum_probs=28.8
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..+++..+||+++-- .=+..|+..|+.||..|.+.|
T Consensus 430 ~~~gVfa~GD~~~~~-----~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 430 TNPKIFAGGDAVRGA-----DLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCCEEEECCcCCCc-----cHHHHHHHHHHHHHHHHHHHh
Confidence 468999999997631 125689999999999998766
No 417
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=32.47 E-value=48 Score=33.88 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=29.3
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
.-+|++++|+=.|. +|.--|+.+|.+||--+...+++
T Consensus 354 ~~~~lf~AGqi~G~------~Gy~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 354 KIPGLFFAGQINGT------EGYEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp SSBTEEE-GGGGTB-------SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceECCCCcch------hHHHHHHHHHHHHHHHHHHHHcC
Confidence 47899999998884 79999999999999887765543
No 418
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=32.31 E-value=15 Score=37.66 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCCC-Ceeeeeeec----CeEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 3 IAKD-GSKKENFQR----GVELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 3 ~~~d-G~~~~~~~~----g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
+.+| |+++++... ..+|+||++|||+| .+.|+.. .|.+
T Consensus 116 v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG-~g~l~~~----aG~~ 158 (428)
T PF12831_consen 116 VIRDGGRITGVIVETKSGRKEIRAKVFIDATG-DGDLAAL----AGAP 158 (428)
T ss_dssp ------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-ccccccc----cccc
Confidence 4444 466666432 57899999999999 5777763 4665
No 419
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=31.64 E-value=1.7e+02 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=21.5
Q ss_pred eeecCeEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 12 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 12 ~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
+.+.+.+++|+.||.|+|..+. .+.+.+|+.
T Consensus 184 V~~~~g~i~ad~vV~A~G~~s~---~l~~~~g~~ 214 (393)
T PRK11728 184 VRTTQGEYEARTLINCAGLMSD---RLAKMAGLE 214 (393)
T ss_pred EEECCCEEEeCEEEECCCcchH---HHHHHhCCC
Confidence 4444458999999999999873 233345764
No 420
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.64 E-value=61 Score=34.69 Aligned_cols=42 Identities=19% Similarity=0.027 Sum_probs=33.5
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|++|+ -+ |-+.+..+..|+.+|++||+.+.+.+.
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999875 23 346678889999999999999876543
No 421
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=31.58 E-value=52 Score=33.81 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=32.0
Q ss_pred ccCCEEEEccCccc-c---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGF-L---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.=||+..+|.++|- + +-+.+.++..||.+|++||+.+.+..
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 35899999988653 3 23457889999999999999987654
No 422
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=31.43 E-value=54 Score=34.82 Aligned_cols=42 Identities=19% Similarity=0.027 Sum_probs=33.3
Q ss_pred cccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
-.-||+..+|++|| +- |-+.+.++..|+.+|++||+.+.+.+
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34699999999975 32 34567889999999999999987654
No 423
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=31.26 E-value=41 Score=33.46 Aligned_cols=34 Identities=26% Similarity=0.154 Sum_probs=26.7
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
.+++.++||....- ...-|+-|+.||..||+.|.
T Consensus 385 ~~~l~~aGd~~~~~---~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 385 WPNLFLAGDWTATG---WPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCEEEecccccCC---CcchHHHHHHHHHHHHHHHh
Confidence 47899999986542 22467889999999999875
No 424
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=30.95 E-value=56 Score=33.51 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=27.6
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
...|++..+||+++.. .-.+.|+..|+.||+.|.
T Consensus 300 t~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 300 TAVPHIYAVGDVIGFP-----SLASASMDQGRIAAQHAV 333 (461)
T ss_pred cCCCCEEEeeecCCCc-----ccHhHHHHHHHHHHHHHc
Confidence 3469999999999742 246889999999999885
No 425
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=30.94 E-value=58 Score=34.95 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=34.3
Q ss_pred ccccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 158 YPVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
+-.-||+..+||+++ +- |-+-+.++..|+.+|++||+.+.+.++
T Consensus 368 ~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 368 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 345799999999875 32 345577889999999999999877553
No 426
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=30.93 E-value=17 Score=37.05 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=27.9
Q ss_pred CccccccCCceEE-EecCCCCceeEEEecCCC-ccCCcccccCCCCCe
Q 016489 327 GPESRYCPARVYE-YVPDEKNQLKLQINAQNC-LHCKACDIKDPKQNI 372 (388)
Q Consensus 327 ~~c~~~CPa~~y~-~~~~~~~~~~~~i~~~~C-~~Cg~C~~~cp~~~I 372 (388)
.-|...||.+++- +--++ .-.++..|.++| ..|..|...||....
T Consensus 183 ~~C~ylCP~g~~~~v~~~~-~~~~v~~~~~~~~~r~~~c~k~cp~~~~ 229 (386)
T COG0348 183 FWCRYLCPYGAFQGVLFDK-SLLKVNYDDKRGCPRCKRCKKVCPEPIP 229 (386)
T ss_pred ceeEEeCCHHHHHHHHccc-ceEEEecccccCCcccccccccCCcccc
Confidence 4689999998653 21121 112344444344 479999999997763
No 427
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=30.86 E-value=29 Score=30.48 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCc-------------cCCcccccCCCCCee
Q 016489 314 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCL-------------HCKACDIKDPKQNIK 373 (388)
Q Consensus 314 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~-------------~Cg~C~~~cp~~~I~ 373 (388)
+..|..|.--.+.+.|+..||.+-|++ . ..=|..+.|. +=+.|+..||.+-..
T Consensus 64 ~~~C~aCr~~~~~g~Cv~~CP~~~Y~~-~------~rCVt~~~C~~~~~~~~~~~~~~~~~~Cv~~CP~gy~~ 129 (149)
T PF00757_consen 64 PSDCYACRHFSYNGTCVEQCPPGKYEF-G------RRCVTKEECPSMCESSKEYPFLIFNGSCVRECPSGYME 129 (149)
T ss_dssp TTSESCESSEEETTEEESS-STT-EEE-T------TEEE-HSSHHCCTTTTSTTSEEEETTEEESS-TTTEEE
T ss_pred CCcCHHHhCcCcCCeecccCChhhccc-c------cEeeccccCCchhhcccccceeeeCCcccccCCCCCEE
Confidence 445555544456799999999999988 2 2334444454 336788999987644
No 428
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.63 E-value=66 Score=34.37 Aligned_cols=42 Identities=14% Similarity=-0.030 Sum_probs=33.4
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|+++| -+ |-+-+..+..|+.+|++||+.+.+.++
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 3699999999985 23 446677889999999999999876543
No 429
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=30.63 E-value=62 Score=34.54 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=30.4
Q ss_pred ccCCEEEEcc-CccccC---CCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGC-AAGFLN---VPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGD-AAG~vd---p~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
.-||+..+|. ++|+.. |..|-.+..||.+|++||+.+.+...+
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 3588999995 455542 222444888899999999999776543
No 430
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=30.11 E-value=61 Score=34.67 Aligned_cols=42 Identities=17% Similarity=-0.044 Sum_probs=29.7
Q ss_pred ccCCEEEEc-cCccccC---CCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIG-CAAGFLN---VPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvG-DAAG~vd---p~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+| +++|+.- |..+-.+..|+.+|++||+.+.+.+.
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 458999999 5555542 22233477899999999999876553
No 431
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=30.05 E-value=57 Score=34.60 Aligned_cols=39 Identities=28% Similarity=0.186 Sum_probs=29.6
Q ss_pred cCCEEEEccCccc-----cCC--CCccchHHHHHHHHHHHHHHHHh
Q 016489 161 FPGGAIIGCAAGF-----LNV--PKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 161 ~~g~lLvGDAAG~-----vdp--~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
-||+..+|..+|+ ... +.+-.+..||.+|++|++.+.++
T Consensus 504 IpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~~ 549 (549)
T PRK12834 504 LPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAARA 549 (549)
T ss_pred eCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhhC
Confidence 4899999999862 222 33556888999999999988653
No 432
>PRK06116 glutathione reductase; Validated
Probab=29.92 E-value=69 Score=32.81 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=27.3
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
..-|++..+||+++... =.+.|+..|+.||+.+.
T Consensus 293 Ts~~~IyA~GD~~~~~~-----~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 293 TNVPGIYAVGDVTGRVE-----LTPVAIAAGRRLSERLF 326 (450)
T ss_pred cCCCCEEEEeecCCCcC-----cHHHHHHHHHHHHHHHh
Confidence 35699999999997532 35799999999999875
No 433
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.57 E-value=72 Score=36.70 Aligned_cols=39 Identities=23% Similarity=-0.009 Sum_probs=31.8
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
...+|+..+||++.- ..-+..||..|+.||++|.+.|..
T Consensus 718 Ts~pgVFAaGDv~~G-----~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 718 TNLPGVFAGGDIVTG-----GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCCCEEEecCcCCC-----ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999742 235779999999999999988765
No 434
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=28.80 E-value=27 Score=39.14 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=21.3
Q ss_pred CccccccCCceEEEecCCCCceeEEEecCCCccC-CcccccCC
Q 016489 327 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC-KACDIKDP 368 (388)
Q Consensus 327 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~C-g~C~~~cp 368 (388)
+.|+|+||.+-+++.++ | -+.|.-| |-|..+|+
T Consensus 295 ~sCVRaCp~~~~e~~~~--g-------~~~Ce~C~~~CpK~C~ 328 (1177)
T KOG1025|consen 295 GSCVRACPDDKMEVEEN--G-------VRMCEKCRGPCPKACT 328 (1177)
T ss_pred CceeeecCCcccchhcc--C-------ceeeeecCCCCccccc
Confidence 67899999998877554 2 2345555 24555555
No 435
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=28.70 E-value=17 Score=38.18 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=16.4
Q ss_pred EecCCCccCCcccccCCCCC
Q 016489 352 INAQNCLHCKACDIKDPKQN 371 (388)
Q Consensus 352 i~~~~C~~Cg~C~~~cp~~~ 371 (388)
+..+-|++|+.|..+||.+-
T Consensus 362 ~~~~sCi~C~~C~d~CP~~L 381 (529)
T COG4656 362 IKEQSCIRCSLCADACPVNL 381 (529)
T ss_pred hhhhccccHHHHHHhCcccc
Confidence 34458999999999999653
No 436
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.40 E-value=66 Score=34.56 Aligned_cols=42 Identities=21% Similarity=0.008 Sum_probs=33.4
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|++|| -+ |-+.|.++..|+..|++||+.+.+.+.
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 424 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999875 22 446677889999999999999876553
No 437
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=28.38 E-value=72 Score=30.36 Aligned_cols=44 Identities=27% Similarity=0.211 Sum_probs=33.0
Q ss_pred ccccCCEEEEccCccccCCCCccchHH--HHHHHHHHHHHHHHhhc
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHT--AMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~--Am~SG~lAAeai~~al~ 201 (388)
+-+.||+++.|=|+.-++...-=|=-. =+.||+.|||.|.+.|+
T Consensus 210 ~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 210 GEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 567999999999999988533222111 25799999999988774
No 438
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=28.31 E-value=70 Score=34.90 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=33.0
Q ss_pred cCCEEEEccCccc-c---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 161 FPGGAIIGCAAGF-L---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 161 ~~g~lLvGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
-||+..+|++||. + |-+-+..+..|+..|++||+.+.+.+.
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999862 2 446677788999999999998876553
No 439
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.09 E-value=55 Score=34.81 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=30.1
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
..+++..+||+++- ..+.+..|+..|..||..|.+.|.
T Consensus 272 s~p~IyAaGDv~~~----~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 272 NVPGVYAAGDLRPK----ELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred CCCCEEEceeccCC----CcchheeHHhhHHHHHHHHHHHHH
Confidence 56899999998741 124567899999999999987774
No 440
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.00 E-value=56 Score=32.14 Aligned_cols=39 Identities=26% Similarity=0.104 Sum_probs=28.3
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
+..-||+..+||.+.-..- =+-.|.-.|-+||..+.+.+
T Consensus 262 ~TsvpGifAaGDv~~~~~r----qi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 262 ETSVPGIFAAGDVADKNGR----QIATAAGDGAIAALSAERYL 300 (305)
T ss_pred ccCCCCEEEeEeeccCccc----EEeehhhhHHHHHHHHHHHh
Confidence 5567999999999886422 25567778888888776655
No 441
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.74 E-value=74 Score=34.24 Aligned_cols=42 Identities=26% Similarity=0.159 Sum_probs=33.4
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|+++| -+ |-+.+..+..|+..|++||+.+.+.+.
T Consensus 384 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 384 VVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred ccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999985 22 446677888999999999999876553
No 442
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=27.71 E-value=65 Score=32.91 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.9
Q ss_pred cCCEEEEccCccccCCCCccchHHHHHHHHHHHHHH
Q 016489 161 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAG 196 (388)
Q Consensus 161 ~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai 196 (388)
.+|+.++||...+.-| ..|.-||.||+.||+.|
T Consensus 420 ~~~l~~AG~~~a~~~~---g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 420 IPNFFLAGDYTKQKYL---ASMEGAVLSGKLCAQAI 452 (453)
T ss_pred cCCEEEeehhccCccc---ccHHHHHHHHHHHHHHh
Confidence 4789999998765433 38888999999999976
No 443
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.53 E-value=68 Score=34.25 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=31.9
Q ss_pred cCCEEEEccCccc-c---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 161 FPGGAIIGCAAGF-L---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 161 ~~g~lLvGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
-+|+..+|++||. + |-+-+..+..|+.+|++||+.+.+.+
T Consensus 371 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 371 VRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred eCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999862 2 33456678889999999999987655
No 444
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=26.42 E-value=72 Score=31.77 Aligned_cols=37 Identities=16% Similarity=-0.051 Sum_probs=26.4
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
..|++..+||+|.+-+... .-+..|+.+|+.||..+.
T Consensus 264 s~~~VyA~GD~a~~~~~~~-~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 264 SAPDIYALGDCAEINGQVL-PFLQPIQLSAMALAKNLL 300 (377)
T ss_pred CCCCEEEeeecEeECCcee-ehHHHHHHHHHHHHHHhc
Confidence 4699999999997643221 125668888888887764
No 445
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=26.06 E-value=85 Score=33.70 Aligned_cols=42 Identities=19% Similarity=0.042 Sum_probs=33.4
Q ss_pred cccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..-||+..+|++|+ +- |-+.+..+..|+..|++||+.+.+..
T Consensus 368 t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 368 TRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred cccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 45799999999874 33 44667788999999999999987654
No 446
>PRK14694 putative mercuric reductase; Provisional
Probab=25.90 E-value=84 Score=32.44 Aligned_cols=34 Identities=18% Similarity=-0.069 Sum_probs=27.2
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
...+++..+||+++... =++.|+..|++||..+.
T Consensus 300 Ts~~~IyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 300 TTVSGIYAAGDCTDQPQ-----FVYVAAAGGSRAAINMT 333 (468)
T ss_pred cCCCCEEEEeecCCCcc-----cHHHHHHHHHHHHHHhc
Confidence 35699999999998532 25789999999998874
No 447
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=25.75 E-value=73 Score=34.01 Aligned_cols=42 Identities=19% Similarity=0.057 Sum_probs=32.1
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|++|| -+ |-+.+..+..|+.+|++||+.+.+..+
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999974 22 335556788899999999999876543
No 448
>PRK14727 putative mercuric reductase; Provisional
Probab=25.00 E-value=80 Score=32.79 Aligned_cols=34 Identities=15% Similarity=-0.057 Sum_probs=27.1
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
..-|++..+||+++... =++.|+..|++||+.+.
T Consensus 311 Ts~~~IyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 311 TSAPDIYAAGDCSDLPQ-----FVYVAAAAGSRAGINMT 344 (479)
T ss_pred cCCCCEEEeeecCCcch-----hhhHHHHHHHHHHHHHc
Confidence 34589999999998532 25789999999999875
No 449
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.96 E-value=91 Score=33.45 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=30.1
Q ss_pred ccCCEEEEccCcccc-CC-CCccc--hHHHHHHHHHHHHHHHHhhcc
Q 016489 160 VFPGGAIIGCAAGFL-NV-PKIKG--THTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 160 ~~~g~lLvGDAAG~v-dp-~~~~G--i~~Am~SG~lAAeai~~al~~ 202 (388)
.=+|+..+|..+|-+ .. -.+.| +..||.+|++||+.+.+.+..
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 348899999776543 22 11234 788899999999998776543
No 450
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=24.94 E-value=61 Score=36.37 Aligned_cols=38 Identities=24% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 162 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 162 ~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
+++.++|++.....| .-||-|+.||+.||+.|.++++.
T Consensus 644 GRL~FAGEaTs~~~~---GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 644 GRVFFAGEATNKQYP---ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCEEEEEhhHhCCCC---eEhHHHHHHHHHHHHHHHHHHhh
Confidence 489999999776444 45777999999999999988765
No 451
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=24.48 E-value=39 Score=27.46 Aligned_cols=25 Identities=8% Similarity=-0.250 Sum_probs=20.3
Q ss_pred ecCCCCCcccCCCCCCCccccccCCce-EEEe
Q 016489 311 LRDPKIPELVNLPEYAGPESRYCPARV-YEYV 341 (388)
Q Consensus 311 v~d~~~c~~~~~~~~~~~c~~~CPa~~-y~~~ 341 (388)
+.|.+.|++| +.|..+||.+. .+|.
T Consensus 57 ~vd~e~CigC------g~C~~~C~~~~~~~W~ 82 (95)
T PRK15449 57 RFDYAGCLEC------GTCRILGLGSALEQWE 82 (95)
T ss_pred EEcCCCCCcc------hhhhhhcCCCCccCcc
Confidence 4488999997 89999999886 3664
No 452
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=24.41 E-value=32 Score=36.82 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=14.5
Q ss_pred CCCccCCcccccCCCC
Q 016489 355 QNCLHCKACDIKDPKQ 370 (388)
Q Consensus 355 ~~C~~Cg~C~~~cp~~ 370 (388)
.+|..||.|.++||.+
T Consensus 400 ~kc~~cG~C~~~CP~~ 415 (772)
T COG1152 400 RKCTYCGNCMRACPNE 415 (772)
T ss_pred HhcccccchhccCCcc
Confidence 7899999999999954
No 453
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.34 E-value=81 Score=33.89 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=32.8
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.-||+..+|+++| -+ |-+.+..+..|+..|++||+.+.+..
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3699999999975 23 45667789999999999999987643
No 454
>PLN02507 glutathione reductase
Probab=24.32 E-value=89 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=28.2
Q ss_pred ccccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
+...|++..+||+++... -.+.|+..|++||+.+.
T Consensus 327 ~Ts~p~IyAiGDv~~~~~-----l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 327 RTNIPSIWAIGDVTNRIN-----LTPVALMEGTCFAKTVF 361 (499)
T ss_pred cCCCCCEEEeeEcCCCCc-----cHHHHHHHHHHHHHHHc
Confidence 346789999999998532 45899999999998774
No 455
>PRK07121 hypothetical protein; Validated
Probab=24.31 E-value=82 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=29.3
Q ss_pred cCCEEEEccCcc-ccC--CCCccchHHHHHHHHHHHHHHHH
Q 016489 161 FPGGAIIGCAAG-FLN--VPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 161 ~~g~lLvGDAAG-~vd--p~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
=+|+..+|..+| +.- -+.+-.+..||.+|++||+.+.+
T Consensus 449 I~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 449 IPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred cCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 478999996654 432 24577789999999999998854
No 456
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=24.29 E-value=44 Score=35.09 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=32.0
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhhcc
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 202 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al~~ 202 (388)
..-||+..+||+++.- .+-+..|+..|..||.+|.+.|..
T Consensus 474 Ts~p~IyAaGDv~~~~----~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 474 TSVPGVFAAGDCTTVP----YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CCCCCEEECccccCCC----CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 3569999999998752 244888999999999999887653
No 457
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=24.23 E-value=27 Score=35.26 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=20.0
Q ss_pred cCCCCCcccCCCCCCCccccccCCceEEEe
Q 016489 312 RDPKIPELVNLPEYAGPESRYCPARVYEYV 341 (388)
Q Consensus 312 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~ 341 (388)
.|.+.|..| +.|+.+||.+++...
T Consensus 47 id~~~C~~C------g~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 47 LDESNCIGC------GQCSLVCPVGAITEK 70 (374)
T ss_pred cCcccCcCc------cCHHHhCCCChhhhh
Confidence 367889886 789999999998764
No 458
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=24.09 E-value=94 Score=31.80 Aligned_cols=34 Identities=35% Similarity=0.313 Sum_probs=27.5
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
..+++..+||+++.. .-.+.|+..|+.||+.+..
T Consensus 298 ~~~~IyaiGD~~~~~-----~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 298 NVPGIYAIGDVIGGP-----MLAHVASHEGIVAAENIAG 331 (461)
T ss_pred CCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHcC
Confidence 468999999999731 3478999999999998853
No 459
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=24.08 E-value=1.1e+02 Score=29.10 Aligned_cols=43 Identities=23% Similarity=0.134 Sum_probs=32.3
Q ss_pred ccccCCEEEEccCccccCCCCccchHH--HHHHHHHHHHHHHHhh
Q 016489 158 YPVFPGGAIIGCAAGFLNVPKIKGTHT--AMKSGMLAAEAGFGVL 200 (388)
Q Consensus 158 ~~~~~g~lLvGDAAG~vdp~~~~Gi~~--Am~SG~lAAeai~~al 200 (388)
+-..||+++.|=|+.-++...-=|=-. =+.||+.|||.|.+.|
T Consensus 209 ~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 209 REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 567999999999999887533323222 2569999999998866
No 460
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=24.04 E-value=92 Score=31.54 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=19.5
Q ss_pred CCeeeeeeecCeEEEecEEEecccCCC
Q 016489 6 DGSKKENFQRGVELRGRITLLAEGCRG 32 (388)
Q Consensus 6 dG~~~~~~~~g~~i~Ak~vI~AdG~~s 32 (388)
++....+..++.+++|+.||.|+|..|
T Consensus 134 ~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 134 DDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred cCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 333333444667899999999999876
No 461
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=23.98 E-value=35 Score=36.79 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=22.3
Q ss_pred ecEEEecccCCCccchhHHHhcCCC
Q 016489 21 GRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 21 Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
+++-|.+.|..-.-.++.++.+|+.
T Consensus 248 ~~lGII~~G~ay~yVkeAl~~lgl~ 272 (640)
T COG4231 248 AKLGIIASGIAYNYVKEALEDLGLD 272 (640)
T ss_pred CceEEEecCccHHHHHHHHHHcCCC
Confidence 8898999999988889988988887
No 462
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.95 E-value=95 Score=33.15 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=33.1
Q ss_pred cCCEEEEccCccc-c---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 161 FPGGAIIGCAAGF-L---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 161 ~~g~lLvGDAAG~-v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
-||+..+|++||. + |-+-+..+..|+..|++|++++.+.++
T Consensus 360 IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 360 IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999752 3 446667788999999999999877654
No 463
>PRK12839 hypothetical protein; Provisional
Probab=23.82 E-value=87 Score=33.55 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=29.7
Q ss_pred ccCCEEEEccCc-ccc---CCCCccchHHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAA-GFL---NVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 160 ~~~g~lLvGDAA-G~v---dp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
.-+|+..+|.++ |+. .|..|-.+..||.+|++||+.|.+
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 457899999654 443 345567789999999999998864
No 464
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.75 E-value=92 Score=32.11 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=27.6
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
...|++..+||+++. ..=.+.|+..|+.||+.|.
T Consensus 301 Ts~p~IyAiGD~~~~-----~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 301 TNVPHIYAIGDVTAK-----LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred cCCCCEEEEeecCCC-----cccHhHHHHHHHHHHHHHc
Confidence 456899999999974 2347789999999999875
No 465
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=23.73 E-value=79 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=13.0
Q ss_pred eecCeEEEecEEEecccCCCc
Q 016489 13 FQRGVELRGRITLLAEGCRGS 33 (388)
Q Consensus 13 ~~~g~~i~Ak~vI~AdG~~s~ 33 (388)
++++.+++|+.||+|+|..+.
T Consensus 119 ~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 119 TRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp ETTS-EEEEEEEEE---SSCS
T ss_pred EEecceeeeeeEEEeeeccCC
Confidence 455569999999999997543
No 466
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.71 E-value=95 Score=33.24 Aligned_cols=42 Identities=21% Similarity=0.021 Sum_probs=32.5
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-||+..+|+++| -+ |-+-+..+..|+..|++|++.+.+.++
T Consensus 374 ~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 374 VVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 4699999999875 23 335566788899999999999876543
No 467
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=23.50 E-value=69 Score=33.74 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=24.5
Q ss_pred CeeeeeeecCeEEEecEEEecccCCCccchhHHHhcCCC
Q 016489 7 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 7 G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
|....+.++..+|+|++||.|.|..|. .|.+++|+.
T Consensus 248 ~~~~~V~T~~G~i~A~~VVvaAG~~S~---~La~~~Gi~ 283 (497)
T PTZ00383 248 DSLYKIHTNRGEIRARFVVVSACGYSL---LFAQKMGYG 283 (497)
T ss_pred CCeEEEEECCCEEEeCEEEECcChhHH---HHHHHhCCC
Confidence 444445555568999999999998863 333355664
No 468
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.19 E-value=1e+02 Score=31.74 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=26.5
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
.-|++..+||+++.. .=.+.|+..|+.||+.+.
T Consensus 294 ~~p~IyAiGD~~~~~-----~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 294 NVPGIYALGDVVGKV-----ELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CCCCEEEEEecCCCc-----ccHHHHHHHHHHHHHHHh
Confidence 468999999998743 236789999999998875
No 469
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=22.93 E-value=95 Score=32.36 Aligned_cols=43 Identities=26% Similarity=0.118 Sum_probs=33.6
Q ss_pred ccccCCEEEEccCc--ccc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 158 YPVFPGGAIIGCAA--GFL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 158 ~~~~~g~lLvGDAA--G~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
+..-||+..+|++| |+- |-+.+..+..|+.+|++||+.+.+..
T Consensus 343 ~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 343 RTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred cccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 34579999999987 332 34667888999999999999987543
No 470
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=22.85 E-value=58 Score=33.07 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCeEecCCCCCcccCCCCCCCccccccCCceEEEecCCCCceeEEEecCCCccCC
Q 016489 307 AHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK 361 (388)
Q Consensus 307 ~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C~~Cg 361 (388)
.-|++.|.+.|.+- ..|+.-||-.-+.++-. .| ..|.|+-|=
T Consensus 206 DGIVLiDQd~CRGw------R~CvsgCPYKKvYfNwk-sg------KsEKCifCy 247 (513)
T COG1140 206 DGIVLIDQDKCRGW------RMCVSGCPYKKVYFNWK-SG------KSEKCIFCY 247 (513)
T ss_pred CceEEeecccccch------hhhhcCCCcceeEeecc-CC------CcceeEEec
Confidence 35778899999884 68999999763333321 13 357888884
No 471
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.51 E-value=1e+02 Score=32.76 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=31.0
Q ss_pred ccCCEEEEccCcc-ccCC--C-CccchHHHHHHHHHHHHHHHHhhc
Q 016489 160 VFPGGAIIGCAAG-FLNV--P-KIKGTHTAMKSGMLAAEAGFGVLH 201 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~vdp--~-~~~Gi~~Am~SG~lAAeai~~al~ 201 (388)
.-+|+..+|..+| +... + .+-++..||.+|++||+.+.+.+.
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 3588999996655 4322 2 256799999999999999877653
No 472
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=22.28 E-value=1.1e+02 Score=31.08 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCEEEEccCc-c-cc--CCCCccchHHHHHHHHHHHHHHHHh
Q 016489 162 PGGAIIGCAA-G-FL--NVPKIKGTHTAMKSGMLAAEAGFGV 199 (388)
Q Consensus 162 ~g~lLvGDAA-G-~v--dp~~~~Gi~~Am~SG~lAAeai~~a 199 (388)
||+..+|.++ | +. +-+.+-++..||.+|++||+.+.+.
T Consensus 388 ~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 388 DNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 7999999864 4 43 2345778999999999999998654
No 473
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.23 E-value=36 Score=35.76 Aligned_cols=37 Identities=30% Similarity=0.239 Sum_probs=29.2
Q ss_pred ccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.-|++..+||+++.-+ +-+..||..|..||.+|.+.+
T Consensus 476 s~p~IyAaGDv~~~~~----~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPY----KQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCEEEcccccCCcc----ceEEEEEccHHHHHHHHHHHH
Confidence 5689999999997532 234579999999999988765
No 474
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=21.99 E-value=25 Score=36.10 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEecCCC---c-cCC------cccccCCCCCeeEE
Q 016489 349 KLQINAQNC---L-HCK------ACDIKDPKQNIKWT 375 (388)
Q Consensus 349 ~~~i~~~~C---~-~Cg------~C~~~cp~~~I~w~ 375 (388)
.+.+|.+.| + .|| .|+..||++||+|.
T Consensus 226 ~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~ 262 (402)
T TIGR02064 226 DIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWD 262 (402)
T ss_pred CccccHHHHHHHHhhccccccchhHhhcCCccccccC
Confidence 367777775 3 344 48999999999996
No 475
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.90 E-value=1e+02 Score=31.61 Aligned_cols=35 Identities=34% Similarity=0.270 Sum_probs=27.7
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
...|++..+||+++. ..-.+.|+..|+.||+.+..
T Consensus 299 t~~~~VyAiGD~~~~-----~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 299 TNVPNIYAIGDIVGG-----PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred cCCCCEEEeeecCCC-----cchHHHHHHHHHHHHHHHcC
Confidence 346899999999973 23478899999999998853
No 476
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=21.75 E-value=92 Score=32.44 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=22.3
Q ss_pred CCCeeeeeeec--C--eEEEecEEEecccCCCcc
Q 016489 5 KDGSKKENFQR--G--VELRGRITLLAEGCRGSL 34 (388)
Q Consensus 5 ~dG~~~~~~~~--g--~~i~Ak~vI~AdG~~s~l 34 (388)
++|+++++... + ..++|+.||+|+|..+.+
T Consensus 158 ~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 158 ETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred cCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 35677665432 2 478999999999999875
No 477
>PRK08401 L-aspartate oxidase; Provisional
Probab=21.74 E-value=97 Score=32.10 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCCeeeeeeecCeEEEecEEEecccCCCccc
Q 016489 5 KDGSKKENFQRGVELRGRITLLAEGCRGSLS 35 (388)
Q Consensus 5 ~dG~~~~~~~~g~~i~Ak~vI~AdG~~s~la 35 (388)
++|+++++...+..++|+.||+|+|..+.+-
T Consensus 148 ~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 148 KNGKAYGVFLDGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred eCCEEEEEEECCEEEEeCeEEECCCcCcCCC
Confidence 4677777777788899999999999988764
No 478
>PRK13748 putative mercuric reductase; Provisional
Probab=21.65 E-value=98 Score=32.67 Aligned_cols=34 Identities=18% Similarity=-0.064 Sum_probs=27.6
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 197 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~ 197 (388)
..-+++..+||+++.. .=++.|+..|++||+.+.
T Consensus 393 Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 393 TSVPHIYAAGDCTDQP-----QFVYVAAAAGTRAAINMT 426 (561)
T ss_pred cCCCCEEEeeecCCCc-----cchhHHHHHHHHHHHHHc
Confidence 3568999999999853 346789999999999875
No 479
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=21.63 E-value=38 Score=35.12 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=13.0
Q ss_pred ecCCCccCCc--ccccCCCCC
Q 016489 353 NAQNCLHCKA--CDIKDPKQN 371 (388)
Q Consensus 353 ~~~~C~~Cg~--C~~~cp~~~ 371 (388)
.+++|++|+. |...||.++
T Consensus 42 ~a~rc~~c~~~~C~~~CP~~~ 62 (471)
T PRK12810 42 QAARCMDCGIPFCHWGCPVHN 62 (471)
T ss_pred HHHhccCCCCCcccccCCCCC
Confidence 4567777766 777777665
No 480
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.62 E-value=1.2e+02 Score=32.69 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=32.8
Q ss_pred cccCCEEEEccCcccc---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAGFL---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
-.-||+..+|++++-+ |=+-+..+..|+..|++||+.+.+.+
T Consensus 366 t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 366 TNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred eECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998544 33456778899999999999887654
No 481
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=21.55 E-value=53 Score=38.28 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.0
Q ss_pred ecEEEecccCCCccchhHHHhcCCC
Q 016489 21 GRITLLAEGCRGSLSEKLIKNFKLR 45 (388)
Q Consensus 21 Ak~vI~AdG~~s~lar~l~~~~gl~ 45 (388)
+++-|++.|..-.-.++.++.+|+.
T Consensus 275 ~~iGIItsG~ay~~v~EAL~~Lgl~ 299 (1159)
T PRK13030 275 ARVGIVTCGKAHLDLMEALRRLGLD 299 (1159)
T ss_pred CCEEEEEeCccHHHHHHHHHHcCCC
Confidence 7788999999888888888888875
No 482
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=21.20 E-value=1.1e+02 Score=33.24 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=32.6
Q ss_pred ccCCEEEEccCcc-cc---CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 160 VFPGGAIIGCAAG-FL---NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 160 ~~~g~lLvGDAAG-~v---dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
.-+|+..+|++|| -+ |-+-+.++..|+..|++||+.+.+..
T Consensus 401 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 401 IVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred ccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999974 22 34566789999999999999987654
No 483
>PRK09077 L-aspartate oxidase; Provisional
Probab=20.98 E-value=1.1e+02 Score=32.41 Aligned_cols=42 Identities=21% Similarity=0.067 Sum_probs=32.8
Q ss_pred cccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..-||+..+|++|+ +- |=+.+..+..|+..|++||+.+.+..
T Consensus 364 t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 364 TDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 35699999999973 32 33567788899999999999987653
No 484
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.62 E-value=52 Score=35.82 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=8.9
Q ss_pred EecEEEecccCCC
Q 016489 20 RGRITLLAEGCRG 32 (388)
Q Consensus 20 ~Ak~vI~AdG~~s 32 (388)
.++.||+|.|++.
T Consensus 278 ~~DaVilAtGa~~ 290 (652)
T PRK12814 278 EFDAVLLAVGAQK 290 (652)
T ss_pred hcCEEEEEcCCCC
Confidence 4677777777653
No 485
>PRK07512 L-aspartate oxidase; Provisional
Probab=20.44 E-value=1.1e+02 Score=32.35 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=32.7
Q ss_pred cccCCEEEEccCc--ccc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAA--GFL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAA--G~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..-+|+..+|++| |+- |-+.+..+..|+..|++||+.+.+..
T Consensus 352 t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 352 SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999997 442 44556778889999999999987654
No 486
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=20.38 E-value=1.1e+02 Score=31.22 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=27.9
Q ss_pred cccCCEEEEccCccccCCCCccchHHHHHHHHHHHHHHHH
Q 016489 159 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 198 (388)
Q Consensus 159 ~~~~g~lLvGDAAG~vdp~~~~Gi~~Am~SG~lAAeai~~ 198 (388)
...+++..+||+++.. .-.+.|+..|+.||+.+..
T Consensus 296 ts~~~IyA~GD~~~~~-----~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 296 TSVPGIYAAGDVNGKP-----PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cCCCCEEEEEecCCCc-----cchhHHHHHHHHHHHHhcC
Confidence 3568999999999853 2357899999999998853
No 487
>PRK08071 L-aspartate oxidase; Provisional
Probab=20.35 E-value=1.1e+02 Score=32.17 Aligned_cols=42 Identities=24% Similarity=0.092 Sum_probs=32.9
Q ss_pred cccCCEEEEccCcc--cc--CCCCccchHHHHHHHHHHHHHHHHhh
Q 016489 159 PVFPGGAIIGCAAG--FL--NVPKIKGTHTAMKSGMLAAEAGFGVL 200 (388)
Q Consensus 159 ~~~~g~lLvGDAAG--~v--dp~~~~Gi~~Am~SG~lAAeai~~al 200 (388)
..-||+..+|++++ +- |-+.+..+..|+..|++||+.+....
T Consensus 343 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 343 TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 35799999999974 32 45667778899999999999986543
Done!