Query 016490
Match_columns 388
No_of_seqs 198 out of 417
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 8E-133 2E-137 990.3 33.7 340 46-388 50-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 3E-119 6E-124 887.9 23.3 330 54-386 1-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 3E-101 7E-106 752.2 29.4 297 56-363 1-297 (297)
4 cd00657 Ferritin_like Ferritin 98.8 5.4E-08 1.2E-12 77.9 11.9 104 151-261 26-129 (130)
5 PF11583 AurF: P-aminobenzoate 98.0 0.00024 5.2E-09 69.5 15.1 215 55-282 6-244 (304)
6 cd01049 RNRR2 Ribonucleotide R 97.5 0.0037 8E-08 60.6 15.3 186 80-282 20-225 (288)
7 cd01041 Rubrerythrin Rubreryth 97.2 0.0041 9E-08 54.0 11.2 99 151-264 32-132 (134)
8 cd01055 Nonheme_Ferritin nonhe 97.1 0.0089 1.9E-07 52.7 12.3 109 150-268 33-142 (156)
9 cd01045 Ferritin_like_AB Uncha 97.0 0.017 3.6E-07 48.3 11.8 122 128-261 12-138 (139)
10 PF00268 Ribonuc_red_sm: Ribon 96.9 0.033 7.3E-07 54.2 15.2 114 151-268 84-211 (281)
11 PF02915 Rubrerythrin: Rubrery 96.8 0.0011 2.4E-08 55.6 3.6 101 154-261 31-136 (137)
12 cd07908 Mn_catalase_like Manga 96.7 0.011 2.4E-07 52.4 9.5 104 151-261 46-153 (154)
13 cd01046 Rubrerythrin_like rubr 96.7 0.022 4.7E-07 49.3 10.6 92 151-266 32-123 (123)
14 cd00907 Bacterioferritin Bacte 96.6 0.092 2E-06 45.9 14.4 114 150-275 35-149 (153)
15 PF00210 Ferritin: Ferritin-li 96.6 0.056 1.2E-06 45.5 12.4 108 150-265 29-139 (142)
16 cd07911 RNRR2_Rv0233_like Ribo 96.5 0.083 1.8E-06 51.6 14.9 125 152-281 78-219 (280)
17 PRK08326 ribonucleotide-diphos 96.4 0.079 1.7E-06 52.9 14.0 166 80-271 36-229 (311)
18 PF02915 Rubrerythrin: Rubrery 96.2 0.016 3.5E-07 48.5 6.6 54 211-265 3-56 (137)
19 PRK09614 nrdF ribonucleotide-d 96.2 0.14 2.9E-06 51.2 14.2 121 151-272 87-219 (324)
20 PRK10635 bacterioferritin; Pro 96.0 0.14 3.1E-06 46.5 12.2 103 151-264 37-140 (158)
21 cd01051 Mn_catalase Manganese 95.8 0.17 3.6E-06 46.1 12.0 101 153-264 54-154 (156)
22 COG1633 Uncharacterized conser 95.7 0.27 5.8E-06 45.7 12.9 134 122-267 31-171 (176)
23 PRK07209 ribonucleotide-diphos 95.6 0.64 1.4E-05 47.6 16.6 168 80-271 68-268 (369)
24 PRK12759 bifunctional gluaredo 95.4 0.55 1.2E-05 48.7 15.3 115 151-271 175-302 (410)
25 cd01052 DPSL DPS-like protein, 95.1 0.47 1E-05 41.2 11.9 108 150-261 36-147 (148)
26 PTZ00211 ribonucleoside-diphos 95.0 0.69 1.5E-05 46.6 14.4 118 151-272 97-228 (330)
27 TIGR00754 bfr bacterioferritin 94.9 0.65 1.4E-05 41.4 12.6 105 151-266 37-142 (157)
28 COG0208 NrdF Ribonucleotide re 94.3 2.3 5.1E-05 43.6 16.4 124 151-279 102-249 (348)
29 cd01044 Ferritin_CCC1_N Ferrit 94.1 0.11 2.3E-06 44.8 5.5 46 217-265 9-54 (125)
30 PRK13967 nrdF1 ribonucleotide- 94.0 2.3 4.9E-05 42.9 15.5 112 151-266 87-210 (322)
31 cd01056 Euk_Ferritin eukaryoti 93.9 0.35 7.6E-06 43.4 8.7 110 151-269 36-147 (161)
32 PF13668 Ferritin_2: Ferritin- 93.9 0.62 1.3E-05 40.3 9.8 98 151-263 37-136 (137)
33 PLN02492 ribonucleoside-diphos 93.8 1.7 3.7E-05 43.6 14.2 116 151-270 86-215 (324)
34 PRK13965 ribonucleotide-diphos 93.6 4.7 0.0001 40.9 16.9 105 155-264 104-221 (335)
35 PF02332 Phenol_Hydrox: Methan 93.4 3.2 7E-05 39.8 14.7 145 116-271 75-233 (233)
36 cd01041 Rubrerythrin Rubreryth 92.8 0.56 1.2E-05 40.7 7.9 96 217-324 12-117 (134)
37 cd01046 Rubrerythrin_like rubr 92.8 0.85 1.8E-05 39.5 8.9 86 217-318 12-99 (123)
38 PRK09101 nrdB ribonucleotide-d 92.1 7.1 0.00015 40.2 16.1 35 237-271 225-261 (376)
39 PRK13966 nrdF2 ribonucleotide- 92.1 9.8 0.00021 38.4 16.8 169 80-271 33-217 (324)
40 PRK10304 ferritin; Provisional 92.0 4 8.6E-05 37.4 12.6 104 151-264 36-143 (165)
41 cd01045 Ferritin_like_AB Uncha 91.8 0.42 9.1E-06 39.8 5.7 48 216-266 8-55 (139)
42 cd00657 Ferritin_like Ferritin 91.0 0.83 1.8E-05 36.1 6.4 51 213-266 5-55 (130)
43 PF05138 PaaA_PaaC: Phenylacet 89.7 2.3 5E-05 41.8 9.5 157 159-334 53-225 (263)
44 PRK13456 DNA protection protei 89.1 16 0.00034 34.7 14.0 139 114-263 19-163 (186)
45 cd01043 DPS DPS protein, ferri 88.3 6.9 0.00015 33.8 10.5 113 147-260 25-137 (139)
46 cd07908 Mn_catalase_like Manga 88.1 1.1 2.4E-05 39.6 5.6 52 213-265 23-74 (154)
47 COG1592 Rubrerythrin [Energy p 86.9 3.7 7.9E-05 38.2 8.3 81 222-312 20-100 (166)
48 cd01057 AAMH_A Aromatic and Al 86.4 12 0.00026 40.0 12.9 136 124-271 87-235 (465)
49 TIGR02029 AcsF magnesium-proto 85.4 1.5 3.2E-05 44.6 5.3 42 222-264 89-130 (337)
50 cd07910 MiaE MiaE tRNA-modifyi 84.9 7.3 0.00016 36.7 9.3 110 151-267 47-160 (180)
51 cd01044 Ferritin_CCC1_N Ferrit 84.4 13 0.00028 31.9 10.1 99 151-263 26-124 (125)
52 PRK12775 putative trifunctiona 84.3 15 0.00034 42.5 13.5 152 104-270 849-1003(1006)
53 COG1633 Uncharacterized conser 84.2 3.2 7E-05 38.6 6.7 61 206-269 24-84 (176)
54 PF04305 DUF455: Protein of un 83.9 20 0.00044 35.3 12.4 49 234-282 177-225 (253)
55 cd00904 Ferritin Ferritin iron 83.8 7.8 0.00017 34.9 8.8 107 151-266 36-144 (160)
56 cd01047 ACSF Aerobic Cyclase S 82.5 2.3 5E-05 43.0 5.3 44 220-264 77-120 (323)
57 cd01048 Ferritin_like_AB2 Unch 82.4 6.6 0.00014 34.5 7.6 92 162-261 36-134 (135)
58 CHL00185 ycf59 magnesium-proto 82.4 2.4 5.3E-05 43.3 5.4 42 222-264 95-136 (351)
59 PRK13654 magnesium-protoporphy 81.8 2.5 5.4E-05 43.3 5.3 42 222-264 99-140 (355)
60 PLN02508 magnesium-protoporphy 81.0 2.3 4.9E-05 43.6 4.6 42 222-264 95-136 (357)
61 cd01058 AAMH_B Aromatic and Al 80.4 27 0.00059 35.0 12.1 117 151-271 128-260 (304)
62 TIGR02029 AcsF magnesium-proto 79.4 3.3 7.2E-05 42.1 5.2 35 151-189 184-218 (337)
63 cd01047 ACSF Aerobic Cyclase S 78.3 2.9 6.3E-05 42.3 4.4 54 132-189 155-208 (323)
64 PLN02508 magnesium-protoporphy 76.4 3.6 7.9E-05 42.1 4.5 35 151-189 190-224 (357)
65 COG4445 MiaE Hydroxylase for s 75.7 10 0.00022 35.7 6.9 127 156-288 62-191 (203)
66 CHL00185 ycf59 magnesium-proto 75.2 4.6 0.0001 41.3 4.9 34 152-189 191-224 (351)
67 PRK13654 magnesium-protoporphy 72.5 3.5 7.6E-05 42.3 3.3 34 151-188 194-227 (355)
68 PRK15022 ferritin-like protein 71.9 85 0.0018 29.1 12.0 104 151-264 36-140 (167)
69 PRK12775 putative trifunctiona 70.4 6.8 0.00015 45.3 5.5 50 212-264 866-915 (1006)
70 cd01048 Ferritin_like_AB2 Unch 64.8 8.8 0.00019 33.8 3.9 49 210-264 4-52 (135)
71 PF06175 MiaE: tRNA-(MS[2]IO[6 61.4 44 0.00096 32.9 8.3 126 119-268 85-212 (240)
72 TIGR02156 PA_CoA_Oxy1 phenylac 60.7 1.9E+02 0.0042 29.2 15.1 159 161-333 62-233 (289)
73 TIGR02158 PA_CoA_Oxy3 phenylac 60.3 1.8E+02 0.0038 28.6 14.2 117 161-282 31-153 (237)
74 PF05067 Mn_catalase: Manganes 60.0 83 0.0018 31.7 10.1 112 155-269 56-198 (283)
75 cd01055 Nonheme_Ferritin nonhe 58.6 29 0.00063 30.4 6.1 48 217-264 14-61 (156)
76 PF00268 Ribonuc_red_sm: Ribon 56.8 42 0.00091 32.7 7.4 90 159-272 29-118 (281)
77 PF13763 DUF4167: Domain of un 54.2 30 0.00065 28.7 5.0 35 225-266 42-76 (80)
78 cd00907 Bacterioferritin Bacte 53.7 34 0.00075 29.6 5.7 48 217-264 16-63 (153)
79 cd01050 Acyl_ACP_Desat Acyl AC 49.0 66 0.0014 32.5 7.5 80 208-289 61-144 (297)
80 PRK13778 paaA phenylacetate-Co 48.4 3.2E+02 0.007 28.0 15.4 159 161-333 80-251 (314)
81 TIGR03225 benzo_boxB benzoyl-C 48.0 95 0.0021 33.0 8.5 106 158-268 142-256 (471)
82 COG2186 FadR Transcriptional r 47.8 46 0.00099 32.0 6.0 61 219-282 149-225 (241)
83 COG1592 Rubrerythrin [Energy p 47.8 33 0.00072 31.9 4.8 41 227-267 91-131 (166)
84 COG1528 Ftn Ferritin-like prot 46.8 2.5E+02 0.0054 26.3 11.0 109 150-268 35-144 (167)
85 cd01052 DPSL DPS-like protein, 43.1 91 0.002 26.8 6.6 59 218-277 18-76 (148)
86 cd07911 RNRR2_Rv0233_like Ribo 43.0 79 0.0017 30.9 6.9 33 235-267 75-107 (280)
87 PRK08326 ribonucleotide-diphos 40.9 48 0.001 33.3 5.1 28 238-265 95-122 (311)
88 COG2833 Uncharacterized protei 40.4 3.1E+02 0.0067 27.4 10.2 80 229-324 181-264 (268)
89 cd01051 Mn_catalase Manganese 39.1 70 0.0015 29.1 5.5 56 210-267 27-82 (156)
90 cd01049 RNRR2 Ribonucleotide R 38.9 54 0.0012 31.8 5.0 33 235-267 74-106 (288)
91 cd01042 DMQH Demethoxyubiquino 37.3 80 0.0017 29.3 5.6 37 235-272 26-62 (165)
92 COG3396 Uncharacterized conser 36.0 37 0.00081 33.9 3.4 79 238-340 46-128 (265)
93 PF06667 PspB: Phage shock pro 35.0 64 0.0014 26.3 4.1 38 322-364 22-59 (75)
94 smart00337 BCL BCL (B-Cell lym 30.8 81 0.0017 26.3 4.2 32 251-283 9-40 (100)
95 PRK09458 pspB phage shock prot 29.9 67 0.0015 26.4 3.3 37 323-364 23-59 (75)
96 PF13668 Ferritin_2: Ferritin- 29.4 1.6E+02 0.0035 25.2 5.9 29 235-263 35-63 (137)
97 COG2193 Bfr Bacterioferritin ( 29.0 4E+02 0.0087 24.8 8.5 100 152-262 38-138 (157)
98 PF09968 DUF2202: Uncharacteri 27.0 3.9E+02 0.0084 24.9 8.2 91 163-264 36-140 (162)
99 TIGR00865 bcl-2 Apoptosis regu 26.8 1.3E+02 0.0028 29.0 5.3 34 251-285 79-112 (213)
100 PRK13456 DNA protection protei 26.1 5.8E+02 0.013 24.3 10.0 53 210-262 24-76 (186)
101 PF11583 AurF: P-aminobenzoate 25.5 1.2E+02 0.0026 29.7 5.0 30 237-266 111-140 (304)
102 PF04305 DUF455: Protein of un 25.2 55 0.0012 32.3 2.5 20 245-264 105-124 (253)
103 cd06102 citrate_synt_like_2 Ci 25.1 7E+02 0.015 25.0 12.4 23 155-178 85-107 (282)
104 PRK07209 ribonucleotide-diphos 24.2 1.6E+02 0.0035 30.3 5.8 38 234-272 124-161 (369)
105 PF12902 Ferritin-like: Ferrit 23.6 1.4E+02 0.0031 28.8 5.0 48 217-264 7-54 (227)
106 TIGR02976 phageshock_pspB phag 23.1 1.3E+02 0.0029 24.4 4.0 38 322-364 22-59 (75)
107 PRK10421 DNA-binding transcrip 22.3 3E+02 0.0065 26.1 6.9 60 220-282 141-218 (253)
108 PRK09614 nrdF ribonucleotide-d 21.9 2.4E+02 0.0052 28.2 6.4 32 234-265 84-115 (324)
109 PF00452 Bcl-2: Apoptosis regu 21.1 2E+02 0.0043 23.4 4.7 32 251-282 9-40 (101)
110 PF03232 COQ7: Ubiquinone bios 20.6 2.4E+02 0.0052 26.3 5.6 51 218-272 14-65 (172)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=8e-133 Score=990.25 Aligned_cols=340 Identities=75% Similarity=1.234 Sum_probs=332.8
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHHhHhhcccccCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHHHHHhh
Q 016490 46 KDVVTHSMAPEKVEIFKSLETWAEHNVLIHLKPVDKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVLVGEMI 125 (388)
Q Consensus 46 ~~~~~~~~~~~~~ev~~~Le~~~~~~~~~~l~~~~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~Lv~~~i 125 (388)
+.|++|||+|+|+|||++||+||++||++||||+|++||||||||| ++|+||+++|++||+++++|||++++|||||||
T Consensus 50 ~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~-~~~~~F~~~v~~lr~~~~~Lpd~~~v~Lvgdmi 128 (390)
T PLN00179 50 HVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPD-PASEGFYDQVKELRERAAELPDDYFVVLVGDMI 128 (390)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCC-CccCChHHHHhhhhHhhcCCChhhhhhhhhcch
Confidence 8899999999999999999999999999999999999999999999 699999999999999999999999999999999
Q ss_pred hccChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCC
Q 016490 126 TEEALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFEN 205 (388)
Q Consensus 126 TEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~ 205 (388)
|||||||||++||++||++|+||+++++|++|+++||||||||||+||+||||||+|||+++|+++|++|++||++++++
T Consensus 129 TEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~~~ 208 (390)
T PLN00179 129 TEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTEN 208 (390)
T ss_pred hhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc
Q 016490 206 NPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 285 (388)
Q Consensus 206 ~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i 285 (388)
+||++|||+||||+||+|||+|||++|+++|||+|++||++||+||+||+.||+++|+++||+|||+||.||++||++||
T Consensus 209 ~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~tm~Aiadmm~~ki 288 (390)
T PLN00179 209 NPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADMMRKKI 288 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCcCCCCCCcchhhhHHHHHHHhcCCChhhHHHHHHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHhhh
Q 016490 286 RMPGHLMYDGQDDKTFDHFSAVTQRLGVYTGQDYADILEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENKAL 365 (388)
Q Consensus 286 ~MP~~~m~dg~~~~lf~~~s~va~r~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~ 365 (388)
+||||+|+||+|++||+||++++||+||||++||.|||++||++|+|++++|||+||+|||||||+||+||+|++||++
T Consensus 289 ~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era~- 367 (390)
T PLN00179 289 TMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERAQ- 367 (390)
T ss_pred CCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCC-CccccceeCCcccC
Q 016490 366 VDMAEKAGS-AVPFSWVFGQEIRI 388 (388)
Q Consensus 366 ~~~~~~~~~-~~~f~wi~~~~~~~ 388 (388)
. |++|.++ .++|||||+|+|.|
T Consensus 368 ~-~~~~~~~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 368 D-RAKKAKPPSIPFSWIFDREVRL 390 (390)
T ss_pred h-HHhccCCCCCceeeecCCccCC
Confidence 4 8755444 79999999999975
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=2.8e-119 Score=887.90 Aligned_cols=330 Identities=54% Similarity=0.937 Sum_probs=290.9
Q ss_pred CchhHHHHHHhHHHHHHHhHhhcccccCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHHHHHhhhccChhhH
Q 016490 54 APEKVEIFKSLETWAEHNVLIHLKPVDKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVLVGEMITEEALPTY 133 (388)
Q Consensus 54 ~~~~~ev~~~Le~~~~~~~~~~l~~~~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~Lv~~~iTEd~LPtY 133 (388)
||+|+|||++|||||++||++||+|++++||||||||| ++|+||.+++++|||+|++|||++++||+||||||||||+|
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~-~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY 79 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPW-SEGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSY 79 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-G-CCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCC-CccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHH
Confidence 68999999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHH
Q 016490 134 QTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVY 213 (388)
Q Consensus 134 ~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y 213 (388)
|++|+++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|++++++++.||+++++++|+++|+|
T Consensus 80 ~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vY 159 (330)
T PF03405_consen 80 HRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVY 159 (330)
T ss_dssp HHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHH
T ss_pred HHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987789999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCC
Q 016490 214 ASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMY 293 (388)
Q Consensus 214 ~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~ 293 (388)
+||||+||++||+|||++|+.+|||||++||++||+||+||+.||+++|+++|++|||+||.||++||+++|+||||+|+
T Consensus 160 tsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~ 239 (330)
T PF03405_consen 160 TSFQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMP 239 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977999999999
Q ss_pred CCCCcchhhhHHHHHHHhcCCChhhHHHHHHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhcC
Q 016490 294 DGQDDKTFDHFSAVTQRLGVYTGQDYADILEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENKALVDMAEKAG 373 (388)
Q Consensus 294 dg~~~~lf~~~s~va~r~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~~~ 373 (388)
||+++++|++|++++|++||||+++|.+||++||++|+|++++|||++|++||||||+||.|++||+||++ . ++++++
T Consensus 240 dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~-~-~~~~~~ 317 (330)
T PF03405_consen 240 DGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERAD-R-RAARMA 317 (330)
T ss_dssp -SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTS-T-TTSSS-
T ss_pred cCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHH-H-HHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 4 764555
Q ss_pred CCccccceeCCcc
Q 016490 374 SAVPFSWVFGQEI 386 (388)
Q Consensus 374 ~~~~f~wi~~~~~ 386 (388)
..++|||||||+|
T Consensus 318 ~~~~fswif~r~v 330 (330)
T PF03405_consen 318 KPVPFSWIFNREV 330 (330)
T ss_dssp -EEE-GGGTT-EE
T ss_pred CCCceeeecCCCC
Confidence 6899999999987
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=3.3e-101 Score=752.20 Aligned_cols=297 Identities=61% Similarity=1.013 Sum_probs=287.3
Q ss_pred hhHHHHHHhHHHHHHHhHhhcccccCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHHHHHhhhccChhhHHH
Q 016490 56 EKVEIFKSLETWAEHNVLIHLKPVDKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVLVGEMITEEALPTYQT 135 (388)
Q Consensus 56 ~~~ev~~~Le~~~~~~~~~~l~~~~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~Lv~~~iTEd~LPtY~~ 135 (388)
.|+|||++|||||++|++++|+|++++||||||||| ++|+||..++++|+++|++||++++++|+++||||||||+||+
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~-~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~ 79 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPD-SASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHS 79 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCC-CCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHH
Confidence 378999999999999998999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHH
Q 016490 136 MLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYAS 215 (388)
Q Consensus 136 ~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~s 215 (388)
+||++||++++ ++++|++|+++||+||||||++|++||++||+|||+++|++++++++.||+++++++|+.+|+|+|
T Consensus 80 ~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~ 156 (297)
T cd01050 80 MLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTS 156 (297)
T ss_pred HHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Confidence 99999998765 679999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCCCC
Q 016490 216 FQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMYDG 295 (388)
Q Consensus 216 fQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~dg 295 (388)
|||+||++||+||+++++ +|||||++||++||+||+||++||+++|+++|++||+++|.||++||+ +|+|||+.|.
T Consensus 157 fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~-~~~MP~~~~~-- 232 (297)
T cd01050 157 FQELATRISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMR-KIVMPGHLMY-- 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH-hCCCChhhhh--
Confidence 999999999999999987 899999999999999999999999999999999999999999999998 5999999995
Q ss_pred CCcchhhhHHHHHHHhcCCChhhHHHHHHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHh
Q 016490 296 QDDKTFDHFSAVTQRLGVYTGQDYADILEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENK 363 (388)
Q Consensus 296 ~~~~lf~~~s~va~r~GvYt~~dy~dIl~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~ 363 (388)
.+|++|++++|++||||+.+|++||++++++|+|++++|||+||+|||||||+||+|++|++||.
T Consensus 233 ---~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 ---PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred ---hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 23889999999999999999999999999999999999999999999999999999999999874
No 4
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.85 E-value=5.4e-08 Score=77.94 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=81.3
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTAR 230 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntar 230 (388)
++.+..+...|..||.+|.+.|.+++.--|...+..... ....+.......++...+.+....|..+...|.++.+
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~ 101 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH----LLAAYALPKTSDDPAEALRAALEVEARAIAAYRELIE 101 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHhcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999997544333323222 1122222233357889999999999999999999777
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 231 LVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 231 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
. ..||.+++++..|+.||.+|..+++++
T Consensus 102 ~---~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 102 Q---ADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred h---cCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 459999999999999999999999875
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.96 E-value=0.00024 Score=69.55 Aligned_cols=215 Identities=18% Similarity=0.180 Sum_probs=124.8
Q ss_pred chhHHHH-HHhHHHHHHHh---Hhhcc-----------cccCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHH
Q 016490 55 PEKVEIF-KSLETWAEHNV---LIHLK-----------PVDKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVV 119 (388)
Q Consensus 55 ~~~~ev~-~~Le~~~~~~~---~~~l~-----------~~~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~ 119 (388)
++..+++ +-++.|+.+.. ++.+. +..+.|.|.+++|-- .-+-|.....+-+.+-.. -.+.-.
T Consensus 6 ~~~~~~~~rL~~~~~~r~~v~~dp~~didWd~~~~~~~~~~~~~~p~~~~pl~-gtp~~~~l~~~~r~~l~~--~~~~~~ 82 (304)
T PF11583_consen 6 PDREETLQRLLESWARRSYVRSDPETDIDWDAPDDEDFDPDRPWLPPELLPLY-GTPLWERLSEEQRIELLR--HEWANY 82 (304)
T ss_dssp ----HHHHHHHHHHHHH-HHHHSTTGG------GGTT--TTS-SS-GGGSTTT-T-HHHHTS-HHHHHHHHH--HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccCCchhhhhhhhhhcccCCCcccCCCcccCccC-CCHHHHhCCHHHHHHHHH--HHHHHH
Confidence 3444555 44567888887 65521 345667777777762 323333111111111111 233344
Q ss_pred HHHHhhhccChh--hHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcC-------CChHHhHHH
Q 016490 120 LVGEMITEEALP--TYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGR-------VDMKQIERS 190 (388)
Q Consensus 120 Lv~~~iTEd~LP--tY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgr-------vDp~~lE~~ 190 (388)
+...+..|..+- .....+...++. ..+.+...+.-+...||++|...-.+|+-.+|+ ..+....+.
T Consensus 83 ~~~~i~~E~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (304)
T PF11583_consen 83 LSQGIWFEQGLVNPAFRMLARDRFPS-----DPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRL 157 (304)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTT-STT-----TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHH
Confidence 445566676654 334444455543 124456777889999999999999999987771 112222222
Q ss_pred HHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016490 191 IQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 270 (388)
Q Consensus 191 ~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dp 270 (388)
. ..+.....+. ..+...|+..++-|.....+.+.+.+ +..-.|.++++++....||+||..|+..+++.....-+
T Consensus 158 ~-~~l~~~~~~~--~~~~~~~~~~lv~Ee~i~~~~~~~~~--D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~ 232 (304)
T PF11583_consen 158 L-RRLARLLPPW--ERGLLFFAFALVAEEIIDAYQREIAR--DETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLS 232 (304)
T ss_dssp H-HHHHTS-SHH--HHHHHHHHHHHHHHHSBHHHHHHHHT---SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred H-HHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 2223323221 12466888889999888777765444 12237999999999999999999999999999999998
Q ss_pred chHHHHHHHHHh
Q 016490 271 DDTILALAGMMK 282 (388)
Q Consensus 271 d~t~~Aia~vm~ 282 (388)
......++..+.
T Consensus 233 ~~~r~~~~~~l~ 244 (304)
T PF11583_consen 233 PAERRALAELLP 244 (304)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777666664
No 6
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=97.50 E-value=0.0037 Score=60.61 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=108.9
Q ss_pred cCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHHHHHhhhccChhhHHHHhhhhcCCcccCCCCchhHHHHHh
Q 016490 80 DKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVLVGEMITEEALPTYQTMLNSLDGVRDETGASLTSWATWIR 159 (388)
Q Consensus 80 ~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~Lv~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~ 159 (388)
..-|.|.+ +|.+.+-.+|.....+ .+..+.-.+.....++.++-+++...-... . ..++...+..
T Consensus 20 ~~~W~p~e-i~~~~D~~~~~~l~~~---er~~~~~~la~~~~~d~~v~~~~~~~~~~~---~--------~~~e~~~~~~ 84 (288)
T cd01049 20 ANFWTPEE-IDLSKDLKDWEKLTEA---ERHFIKRVLAFLAALDSIVGENLVELFSRH---V--------QIPEARAFYG 84 (288)
T ss_pred HcCCChhh-cchhhhHHHHhHCCHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---c--------ChHHHHHHHH
Confidence 35899999 7774222334311100 111122222233344555555554433221 1 2567788899
Q ss_pred hhhhhhhhhhHHHHhHHhHhcCCCh--HH----------hHHHHHHHHhcCCCCC---CCCCchhhHHHHHhhhhhhH-H
Q 016490 160 AWTAEENRHGDLLNKYLYLSGRVDM--KQ----------IERSIQYLIRSGMDHK---FENNPYNGFVYASFQERATF-I 223 (388)
Q Consensus 160 ~WtAEEnRHG~aLr~YL~vsgrvDp--~~----------lE~~~~~li~~G~~~~---~~~~p~~~l~y~sfQE~AT~-i 223 (388)
.+.++|+.|+.+-..++-.-+. |+ .. +.+.. ..+...|+.. +..+.+..++.-.+.|..-+ .
T Consensus 85 ~q~~~E~iH~e~Ys~il~~l~~-~~e~~~~~~~~~~~~~l~~k~-~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s 162 (288)
T cd01049 85 FQAFMENIHSESYSYILDTLGK-DEERDELFEAIETDPALKKKA-DWILRWYDNLDDNTKESFAERLVAFAILEGIFFYS 162 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHhcCHHHHHHH-HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874332 21 11 11111 2222223221 11244556655478887766 4
Q ss_pred HHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc----hHHHHHHHHHh
Q 016490 224 SHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD----DTILALAGMMK 282 (388)
Q Consensus 224 ~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd----~t~~Aia~vm~ 282 (388)
++..+-.+++..-=|-++++...|++||.+|..|...+++.++...|+ ....-+.++++
T Consensus 163 ~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~ 225 (288)
T cd01049 163 GFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIK 225 (288)
T ss_pred HHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Confidence 455555554433358899999999999999999999999999998875 33444444444
No 7
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.25 E-value=0.0041 Score=54.05 Aligned_cols=99 Identities=23% Similarity=0.139 Sum_probs=79.6
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhh-hHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERA-TFISHGNT 228 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~A-T~i~y~nt 228 (388)
....+.|...=..||..|+..+.+|+. +.|.++ .. +...++....|-..--.|.. +...|.++
T Consensus 32 ~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~------------~~---~~~~~~~~~~l~~~~~~E~~e~~~~y~~~ 96 (134)
T cd01041 32 YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT------------GP---PIGIGDTLENLKAAIAGETYEYTEMYPEF 96 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------CC---CCCcchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567889999889999999999999997 444444 11 11112556677777778885 66789999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.++|...||...+.+...|+.||..|...|.+.+..
T Consensus 97 ~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 97 AEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988765
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.13 E-value=0.0089 Score=52.72 Aligned_cols=109 Identities=23% Similarity=0.209 Sum_probs=87.8
Q ss_pred CchhHHHHHhhhhhhhhhhhHHHHhHHhH-hcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHH
Q 016490 150 SLTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNT 228 (388)
Q Consensus 150 ~~~~w~~W~~~WtAEEnRHG~aLr~YL~v-sgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nt 228 (388)
+.+.++.|.+....||-.|+..+-+|+.. -|.++...+... .. ...++...|-...=.|+.....|.++
T Consensus 33 ~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~---------~~-~~~~~~~~l~~al~~E~~~~~~~~~l 102 (156)
T cd01055 33 GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAP---------PS-EFESLLEVFEAALEHEQKVTESINNL 102 (156)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC---------Cc-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999974 345554333321 00 11356677777777888888899999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 268 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 268 (388)
.+.|...||++...++..|..||..|...+.+++..+-..
T Consensus 103 ~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~~ 142 (156)
T cd01055 103 VDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLA 142 (156)
T ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999989999999999999999999999999999876555
No 9
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.96 E-value=0.017 Score=48.26 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=80.3
Q ss_pred cChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhc-CCChHH-hHHHHHHHHhcCC---CCC
Q 016490 128 EALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQ-IERSIQYLIRSGM---DHK 202 (388)
Q Consensus 128 d~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsg-rvDp~~-lE~~~~~li~~G~---~~~ 202 (388)
.+.-.|........ +..-..++..=..||.+|.+.|...+.--+ .-.|.. ............+ ...
T Consensus 12 ~~~~~Y~~~a~~~~---------~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (139)
T cd01045 12 EAAEFYLELAEKAK---------DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALE 82 (139)
T ss_pred HHHHHHHHHHhHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHH
Confidence 44455665554433 446677888889999999999999987433 112222 1111111111100 011
Q ss_pred CCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 203 FENNPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 203 ~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
...+....+-...--|.....+|.++++ ..+||..+.++.+|+.||.+|...+.++
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1135566777777788888899998555 5789999999999999999999988764
No 10
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=96.92 E-value=0.033 Score=54.19 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=76.3
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHH-------------hHHHHHHHHhcCCCCCCCCCchhhHHHHHhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ-------------IERSIQYLIRSGMDHKFENNPYNGFVYASFQ 217 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~-------------lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQ 217 (388)
.++...++..+.++|+.|..+-..++-.-+ -|+.. +.+.. ..+..-++.. .+....+++-.+.
T Consensus 84 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~~~~~~~~~~~~~~l~~k~-~~i~~~~~~~--~~~~~~lv~~~~l 159 (281)
T PF00268_consen 84 SPEIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKERDEIFDWVEEDPELQKKL-DWIEKWYEDN--DSLAEKLVASVIL 159 (281)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHSHHHHHHH-HHHHHHHCSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhhhHHhhHH-HHHHhhchhh--hhHHHHHHHHHHH
Confidence 567888999999999999999988887544 34432 22212 2334444432 1223455677777
Q ss_pred hhhhHHH-HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016490 218 ERATFIS-HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 268 (388)
Q Consensus 218 E~AT~i~-y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 268 (388)
|.--+.+ +.-+.-+++.-.=|-+.++...|.+||.+|..|...+++.+.+-
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE 211 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8753322 22233343323368899999999999999999999999998864
No 11
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.82 E-value=0.0011 Score=55.55 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=65.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHhHHhH-hcCCChHHhHHHHHHHHhcCCCCCCCCC---chhhHHHHHhh-hhhhHHHHHHH
Q 016490 154 WATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIERSIQYLIRSGMDHKFENN---PYNGFVYASFQ-ERATFISHGNT 228 (388)
Q Consensus 154 w~~W~~~WtAEEnRHG~aLr~YL~v-sgrvDp~~lE~~~~~li~~G~~~~~~~~---p~~~l~y~sfQ-E~AT~i~y~nt 228 (388)
-..-...=..+|.+|...|.+.+.- .+..+|...... +..-+.+..... .+...+..+.+ |.-+..+|..+
T Consensus 31 ~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~ 106 (137)
T PF02915_consen 31 LKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEK----VEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAEL 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCC----CCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhh----hhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677899999999988852 233333311111 111111111111 13444555555 77788889885
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
++ ..+||..++++..|+.||.+|...|.++
T Consensus 107 a~---~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 107 AR---KAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HH---HTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 6889999999999999999999999876
No 12
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.75 E-value=0.011 Score=52.37 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=69.5
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCC---CCCCCchhhHHHHHhhhhhhHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDH---KFENNPYNGFVYASFQERATFISHG 226 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~---~~~~~p~~~l~y~sfQE~AT~i~y~ 226 (388)
+..-..-+..=..||-+|...|.+.+. +.| +|....... ....-|.+ ....++...+-...-.|..+..+|.
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg--~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~ 121 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGG--DPRYRSSSS--DKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYK 121 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcchhhcc--ccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777899999999999875 433 232211110 00000111 1112444455556667999999999
Q ss_pred HHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 227 NTARLVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 227 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
++++ ..+||.++.++..|+.||..|...+.++
T Consensus 122 ~~~~---~~~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 122 RQAE---TIKDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8666 5689999999999999999999988765
No 13
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.68 E-value=0.022 Score=49.33 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=75.8
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTAR 230 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntar 230 (388)
.+..+.|.+.=..||..|+..+.+++ +.+. .+....|-...-.|..-...|.++.+
T Consensus 32 ~~~~A~~f~~~a~eE~~HA~~~~~~l---~~i~---------------------~~~~~~le~a~~~E~~~~~~~~~~~~ 87 (123)
T cd01046 32 YPEVAEELKRIAMEEAEHAARFAELL---GKVS---------------------EDTKENLEMMLEGEAGANEGKKDAAT 87 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCc---------------------ccHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 56788899988999999999999976 2221 25556666666677766666889999
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 231 LVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 231 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
.|..-||...+..+..|+.+|..|...|.+.+++++
T Consensus 88 ~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~~ 123 (123)
T cd01046 88 EAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERYF 123 (123)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998763
No 14
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.62 E-value=0.092 Score=45.85 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=83.6
Q ss_pred CchhHHHHHhhhhhhhhhhhHHHHhHHhHhc-CCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHH
Q 016490 150 SLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNT 228 (388)
Q Consensus 150 ~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsg-rvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nt 228 (388)
+......|...=..||.+|.+.+.+|+.--| ......+. .+....+....+-...=.|..+...|+.+
T Consensus 35 ~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~-----------~~~~~~~~~~~l~~~l~~E~~~~~~y~~~ 103 (153)
T cd00907 35 GLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLG-----------KLRIGEDVPEMLENDLALEYEAIAALNEA 103 (153)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCC-----------CCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888999999999999998433 32221110 11111244455666666788888899999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHH
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTIL 275 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~ 275 (388)
.++|...+|+....++..|.+||..|..+|.+.++. ++..++++-+
T Consensus 104 ~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~-~~~~g~~~~~ 149 (153)
T cd00907 104 IALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL-IDKMGLQNYL 149 (153)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCHHHHH
Confidence 998888899999999999999999999999999876 4444444443
No 15
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.59 E-value=0.056 Score=45.47 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=85.8
Q ss_pred CchhHHHHHhhhhhhhhhhhHHHHhHHhHhcC-C--ChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHH
Q 016490 150 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGR-V--DMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHG 226 (388)
Q Consensus 150 ~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgr-v--Dp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ 226 (388)
...+.+.+......||..|++.+.+|+.-=|. . ++..+.+ +. .|....++...|...---|......|.
T Consensus 29 ~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~-----~~---~~~~~~~~~~~l~~~l~~e~~~~~~~~ 100 (142)
T PF00210_consen 29 NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE-----IP---KPPEWTDPREALEAALEDEKEIIEEYR 100 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH-----HH---SSSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh-----hh---ccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999984333 2 2332332 11 111123777788888888899999999
Q ss_pred HHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 227 NTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 227 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
.+.+.|...+||.+..++..+-.+|..|..+...++..+
T Consensus 101 ~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 101 ELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888999999999999999999999999988764
No 16
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.54 E-value=0.083 Score=51.62 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=73.9
Q ss_pred hhHHHHHhhhhhhhhhhhHHHHhHHhHhcCC-ChHHh----HHHH--H---HHHhcCCCCCCCCCchh-hHHHHHhhhhh
Q 016490 152 TSWATWIRAWTAEENRHGDLLNKYLYLSGRV-DMKQI----ERSI--Q---YLIRSGMDHKFENNPYN-GFVYASFQERA 220 (388)
Q Consensus 152 ~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrv-Dp~~l----E~~~--~---~li~~G~~~~~~~~p~~-~l~y~sfQE~A 220 (388)
.+...+...=..+|++|+.+-..++..=+.- |.... +... + ..+..-++.....+-+. .++|..+.|--
T Consensus 78 ~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGi 157 (280)
T cd07911 78 LEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGV 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999998732221 11111 1111 1 11221112111001112 34566678874
Q ss_pred hHHH-----HHHHHHHHhhhC-CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 016490 221 TFIS-----HGNTARLVKEHG-DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMM 281 (388)
Q Consensus 221 T~i~-----y~ntarla~~~g-dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm 281 (388)
-+-+ +..+++ .| -|-+.++...|.+||.+|-.|...+++.+...+|. ....+.+.+
T Consensus 158 lf~sgF~~~~~~l~~----~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~-~~~~~~e~~ 219 (280)
T cd07911 158 LAETGYYAWRTICEK----RGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDA-NWDVFEERM 219 (280)
T ss_pred HHHHHHHHHHHHHhh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChh-HHHHHHHHH
Confidence 4322 222322 23 78999999999999999999999999999988873 333344444
No 17
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=96.40 E-value=0.079 Score=52.93 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=93.9
Q ss_pred cCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHH--------HHHhhhccChhhHHHHhhhhcCCcccCCCCc
Q 016490 80 DKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVL--------VGEMITEEALPTYQTMLNSLDGVRDETGASL 151 (388)
Q Consensus 80 ~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~L--------v~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~ 151 (388)
...|.|.+ ||++ + .+++|+ +|+++-.-.+ .++.++-.|++.+.. .+.. +..
T Consensus 36 ~~fW~peE-idls-~------D~~dw~----~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~~i~----~~~~-----~~~ 94 (311)
T PRK08326 36 AKFWNPAD-IDFS-R------DAEDWE----KLSDEERDYATRLCAQFIAGEEAVTLDIQPLIS----AMAA-----EGR 94 (311)
T ss_pred HcCCCHHh-cCcc-c------hHHHHH----hCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hccc-----cCC
Confidence 46799998 8884 2 234553 3555433222 244444455532221 1110 001
Q ss_pred hhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHH------HHHHH-----hcCCCCCCCCC---chhhHH-HHHh
Q 016490 152 TSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERS------IQYLI-----RSGMDHKFENN---PYNGFV-YASF 216 (388)
Q Consensus 152 ~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~------~~~li-----~~G~~~~~~~~---p~~~l~-y~sf 216 (388)
++-..++..=..+|++|..+-..|+..-+.-+. +... .+..+ ....+.....+ .+..++ |..+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~ 172 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED--LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHV 172 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 344566778889999999999999874343321 1111 11110 00011111112 233333 6667
Q ss_pred hhhhhHHH-----HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016490 217 QERATFIS-----HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 271 (388)
Q Consensus 217 QE~AT~i~-----y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd 271 (388)
.|---+.+ ..++++ .---|-++++...|.+||.+|-.|...+++.+...+|.
T Consensus 173 iEGi~f~sgF~~~~~~l~~---~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~ 229 (311)
T PRK08326 173 VEGVLAETGYYAWRKICVT---RGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDS 229 (311)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 88743221 123333 22378899999999999999999999999999988885
No 18
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.16 E-value=0.016 Score=48.51 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=47.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 211 FVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 211 l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
|-..+-.|.....+|..+++.++.-| |.++.++..||.||.+|..++.++...+
T Consensus 3 L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 3 LEMAIKMELEAAKFYRELAEKAKDEG-PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556689999999999999876555 9999999999999999999999999875
No 19
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=96.16 E-value=0.14 Score=51.18 Aligned_cols=121 Identities=15% Similarity=-0.024 Sum_probs=73.6
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHH--hHH-------H--HHHHHhcCCCCCCCCCchhhHHHHHhhhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ--IER-------S--IQYLIRSGMDHKFENNPYNGFVYASFQER 219 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~--lE~-------~--~~~li~~G~~~~~~~~p~~~l~y~sfQE~ 219 (388)
.++...+...+.++|+.|+.+-...+-.-+ .+.+. +.. . +...+..-|+......-...+++-.+.|.
T Consensus 87 ~~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEg 165 (324)
T PRK09614 87 TPEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEG 165 (324)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 567788999999999999998777776322 12222 111 0 11122222332111123445566666675
Q ss_pred hhHHH-HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 220 ATFIS-HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 220 AT~i~-y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
--+-+ ..-+--+++.--=|-++++...|++||.+|-.|...+++.++...|..
T Consensus 166 i~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~ 219 (324)
T PRK09614 166 FLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPEL 219 (324)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHh
Confidence 43322 111112322222477899999999999999999999999999887763
No 20
>PRK10635 bacterioferritin; Provisional
Probab=95.95 E-value=0.14 Score=46.52 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=82.9
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
...++.|...=..||-+|++.|-+++. +-|..+...+.. ..++ .++...|-..--.|+-+.-.|+...
T Consensus 37 ~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~---------~~~g--~~v~eml~~dl~~E~~ai~~y~e~i 105 (158)
T PRK10635 37 LMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGK---------LNIG--EDVEEMLRSDLRLELEGAKDLREAI 105 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC---------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776558999999999999998 544445544421 2222 3777788888888999999999999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 230 RLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
++|...+|++-++++..|-.||..|...+.+.++.
T Consensus 106 ~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 106 AYADSVHDYVSRDMMIEILADEEGHIDWLETELDL 140 (158)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988899999999999999999999999888765
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=95.82 E-value=0.17 Score=46.08 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=64.6
Q ss_pred hHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHH
Q 016490 153 SWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLV 232 (388)
Q Consensus 153 ~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla 232 (388)
....-+..=..||-.|-..|..=+..=|. |+.-.. - +++|-... .++..-+.+.--=|.....-|.++.+
T Consensus 54 ~~~d~l~~ia~eEm~H~e~la~~I~~Lg~-~~~g~p-----w-~~~yv~~~-~d~~~~L~~ni~aE~~Ai~~Y~~l~~-- 123 (156)
T cd01051 54 KYRDLLLDIGTEELSHLEMVATLIAMLLK-DSQGVP-----W-TAAYIQSS-GNLVADLRSNIAAESRARLTYERLYE-- 123 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCc-----C-CCcccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444455777776666655441111 111000 0 12231121 25566677777778888888998666
Q ss_pred hhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 233 KEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 233 ~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+.||.+..++.+|..||..|..-|.+.++.
T Consensus 124 -~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 124 -MTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred -HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999998875
No 22
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.27 Score=45.69 Aligned_cols=134 Identities=19% Similarity=0.112 Sum_probs=91.7
Q ss_pred HHhhhc-cChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChH-HhHHHHHH-HHhc
Q 016490 122 GEMITE-EALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMK-QIERSIQY-LIRS 197 (388)
Q Consensus 122 ~~~iTE-d~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~-~lE~~~~~-li~~ 197 (388)
.+.-.| ++.=-|. .++.+.. +..-..-+..=..||-+|-+.+.+.++ +++.--+. ..+.+... .+..
T Consensus 31 ~Ai~~E~eA~~fY~-~lae~~~--------~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (176)
T COG1633 31 IAIRGELEAIKFYE-ELAERIE--------DEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEY 101 (176)
T ss_pred HHHHHHHHHHHHHH-HHHHhcC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccc
Confidence 333445 4444454 4444442 446677777888999999999999987 44333111 11222222 2223
Q ss_pred CCC---CCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 198 GMD---HKFENNPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 198 G~~---~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
+.. .....+....+-+...+|+.|-.+|.-+.. ...++..+.+...|+.||..|+..+....+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~---~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 102 LQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLD---ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred cCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 222346778899999999999999997444 5789999999999999999999999999887654
No 23
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=95.59 E-value=0.64 Score=47.62 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=94.4
Q ss_pred cCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHH--------HHHhhhccChhhHHHHhhhhcCCcccCCCCc
Q 016490 80 DKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVL--------VGEMITEEALPTYQTMLNSLDGVRDETGASL 151 (388)
Q Consensus 80 ~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~L--------v~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~ 151 (388)
...|.|.+ ||-+ ..+.+|+ ...+|+++-.-++ .++.++-+|+.. .+..++ ..
T Consensus 68 ~nfW~peE-I~ls-------~Di~dw~-~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~---~l~~~i--------~~ 127 (369)
T PRK07209 68 ANHWMPQE-VNMS-------RDIALWK-SPNGLTEDERRIVKRNLGFFSTADSLVANNIVL---AIYRHI--------TN 127 (369)
T ss_pred hCCCCchh-cCcc-------ccHHHHc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHc--------CH
Confidence 45799988 5552 2344552 1124665543332 334444445421 122223 25
Q ss_pred hhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHH----------HHHHHH---hc----CCCCCCC---CCchhhH
Q 016490 152 TSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIER----------SIQYLI---RS----GMDHKFE---NNPYNGF 211 (388)
Q Consensus 152 ~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~----------~~~~li---~~----G~~~~~~---~~p~~~l 211 (388)
++...++..+.++|+.|+.+-...+-.-+ .|+..+.. ....+. .. +++..+. .+.+..+
T Consensus 128 pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (369)
T PRK07209 128 PECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNL 206 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 67778999999999999998765554222 34433111 111111 11 1211111 1234555
Q ss_pred H-HHHhhhhhhH----HHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016490 212 V-YASFQERATF----ISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 271 (388)
Q Consensus 212 ~-y~sfQE~AT~----i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd 271 (388)
| |.+|.|-.-+ .+--++++ .--=|-++++...|++||.+|-.|+..+++.+....|+
T Consensus 207 va~~~ilEGi~FysgFa~~~~l~r---~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~ 268 (369)
T PRK07209 207 IAFYCIMEGIFFYVGFTQILSLGR---QNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPH 268 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5 4566675432 22223333 22246789999999999999999999999999887774
No 24
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.37 E-value=0.55 Score=48.74 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=70.9
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHH---------HHHHHhcCCCCCCCCCchhhHHHHHhhhhhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERS---------IQYLIRSGMDHKFENNPYNGFVYASFQERAT 221 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~---------~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT 221 (388)
.++-..+...|+++|+.|+.+-...+-.=+. |.+..... .+... . ..+.....-+..++...|.|-.-
T Consensus 175 ~pE~~~~~~~q~~~E~iHsesYs~il~tl~~-~~~~~~~~~~~~~~~~k~~~~~-~-~~~~~~~~~~~~lv~~~~lEgi~ 251 (410)
T PRK12759 175 NNEIRNMLGSFAAREGIHQRAYALLNDTLGL-PDSEYHAFLEYKAMTDKIDFMM-D-ADPTTRRGLGLCLAKTVFNEGVA 251 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhHHHHHHHHHHH-h-cCcchHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999986655442111 22222211 11111 1 22221112234566666777632
Q ss_pred H----HHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016490 222 F----ISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 271 (388)
Q Consensus 222 ~----i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd 271 (388)
+ .+--++++ .--=|-++++...|++||..|-.|...+++.+++..|+
T Consensus 252 Fys~Fa~~~~l~~---~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 302 (410)
T PRK12759 252 LFASFAMLLNFQR---FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY 302 (410)
T ss_pred HHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 2 22223333 11247789999999999999999999999999988875
No 25
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.09 E-value=0.47 Score=41.18 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=74.1
Q ss_pred CchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCC----CCCCCchhhHHHHHhhhhhhHHHH
Q 016490 150 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDH----KFENNPYNGFVYASFQERATFISH 225 (388)
Q Consensus 150 ~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~----~~~~~p~~~l~y~sfQE~AT~i~y 225 (388)
.+.....|+..=..||..|.+.+..++..-|..-...... +...+|+.+ ....+....+-..--.|..+...|
T Consensus 36 ~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~ 112 (148)
T cd01052 36 EGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKD---WYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVY 112 (148)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHH---HHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4667888998889999999999999999534332211211 122222111 111233334444444677777778
Q ss_pred HHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 226 GNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 226 ~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
+++.++|.. +|++...++..|-+||..|...|..+
T Consensus 113 ~~~~~~a~~-~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 113 KELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888887765 89999999999999999999998875
No 26
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=94.99 E-value=0.69 Score=46.56 Aligned_cols=118 Identities=15% Similarity=0.035 Sum_probs=69.9
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHh-------------HHHHHHHHhcCCCCCCCCCchhhHHHHHhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQI-------------ERSIQYLIRSGMDHKFENNPYNGFVYASFQ 217 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~l-------------E~~~~~li~~G~~~~~~~~p~~~l~y~sfQ 217 (388)
.++...+...|.+.|+.|+.+-.-.+-.-+ -|+... .+..+. +..-++- ..+++..++.-++.
T Consensus 97 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~-~~~~~~~~~f~~~~~~p~i~~K~~~-~~~~~~~--~~~~~~~lv~~~~l 172 (330)
T PTZ00211 97 VPEARCFYGFQIAMENIHSETYSLLIDTYI-TDEEEKDRLFHAIETIPAIKKKAEW-AAKWINS--SNSFAERLVAFAAV 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCHHHHHHHHH-HHHHHhc--chHHHHHHHHHHHh
Confidence 456778999999999999987654433211 133321 111111 1111221 12556666655566
Q ss_pred hhhhHHH-HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 218 ERATFIS-HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 218 E~AT~i~-y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
|.--+.+ +..+--+++.--=|-++++...|++||.+|-.|...++..+++..|.+
T Consensus 173 Egi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~ 228 (330)
T PTZ00211 173 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRE 228 (330)
T ss_pred hhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 6543221 122222322222467899999999999999999999999998665543
No 27
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.91 E-value=0.65 Score=41.37 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=78.8
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcC-CChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgr-vDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
-.+.+.|...=..||..|++-|..|+.--|. .+...+ . .+....+....|-..-=.|......|+.+.
T Consensus 37 ~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i--------~---~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i 105 (157)
T TIGR00754 37 LKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDL--------G---KLRIGETVREMLEADLALELDVLNRLKEAI 105 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcC--------C---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788877778999999999999985343 231111 1 111123555556666667888888888888
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 230 RLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
++|...+|+....++..|.+||..|..++...++.+-
T Consensus 106 ~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~~ 142 (157)
T TIGR00754 106 AYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELID 142 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999887643
No 28
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=94.32 E-value=2.3 Score=43.62 Aligned_cols=124 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHH-----------hHHHHHHHHhcCCCCCCCCCc--------hhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQ-----------IERSIQYLIRSGMDHKFENNP--------YNG 210 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~-----------lE~~~~~li~~G~~~~~~~~p--------~~~ 210 (388)
.+.-..|+..|..+|+-|+..=.--+- +..--+... +.+. ..-|..-|+- ...+| +..
T Consensus 102 ~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k-~~~i~~~y~~-~~~~~~~~~~~~~~~~ 179 (348)
T COG0208 102 TPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEK-AEIILRYYDD-LGDDPDDPLEEFLLKL 179 (348)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHHH-HHHHHHHHHh-ccCCcccchHHHHHHH
Confidence 566688999999999999976432222 111011111 1111 1222332332 22244 778
Q ss_pred HHHHHhhhhh----hHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 016490 211 FVYASFQERA----TFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAG 279 (388)
Q Consensus 211 l~y~sfQE~A----T~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~ 279 (388)
++|.++-|-- -+.+.-++++.. -=|-.++|.+.|.+||.+|-.++..++.+++...|+.--..+.+
T Consensus 180 ~v~~~~lEgi~FYsGFa~~~~l~~r~---kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~ 249 (348)
T COG0208 180 VVASVILEGILFYSGFAYPLYLARRG---KMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKD 249 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHH
Confidence 8888888853 245556666643 25678999999999999999999999999999999853333333
No 29
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=94.12 E-value=0.11 Score=44.83 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
-|.-...+|+++++. ..+|.+++++..||.+|.+|+.+|.++....
T Consensus 9 ~E~~~~~~Y~~la~~---~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 9 DEITEAAIYRKLAKR---EKDPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778899996664 5699999999999999999999999988764
No 30
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=94.03 E-value=2.3 Score=42.89 Aligned_cols=112 Identities=10% Similarity=-0.055 Sum_probs=65.8
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHH--hHHH------HH---HHHhcCCCCCCCCCchhhHHHHHhhhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ--IERS------IQ---YLIRSGMDHKFENNPYNGFVYASFQER 219 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~--lE~~------~~---~li~~G~~~~~~~~p~~~l~y~sfQE~ 219 (388)
.++-..++..|..+|+.|+.+-..-+-.=+. +.+. +... ++ ..+..-|+. .+.+..++...+.|-
T Consensus 87 ~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~---~~~~~~~v~~~~lEg 162 (322)
T PRK13967 87 TPHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRG---DDALKRKASSVMLES 162 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHH
Confidence 4566789999999999999986655541111 1111 1111 11 223333442 255666677777776
Q ss_pred hhH-HHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 220 ATF-ISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 220 AT~-i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
.-+ +.....--+++.--=|-++++...|++||..|-.+....+.+.+
T Consensus 163 i~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 163 FLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 331 11111112222222477999999999999999999998664444
No 31
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=93.94 E-value=0.35 Score=43.41 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=87.6
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
.++++.|.+.=..||..|++.|-+|+. .-|.++...++... .....++...|-..-=.|.--...+..+.
T Consensus 36 l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~---------~~~~~~~~e~l~~al~~E~~vt~~~~~l~ 106 (161)
T cd01056 36 LPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE---------KDEWGSGLEALELALDLEKLVNQSLLDLH 106 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998 44455655544321 01224667777777778887778888899
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHHhhC
Q 016490 230 RLVKEHGDMKLAQICGT-IASDEKRHETAYTKIVEKLFEID 269 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~le~d 269 (388)
++|...+|++....+.. +=.++..|.+.+.++++.+-.+.
T Consensus 107 ~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~ 147 (161)
T cd01056 107 KLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVG 147 (161)
T ss_pred HHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99988899999999997 99999999999999998865443
No 32
>PF13668 Ferritin_2: Ferritin-like domain
Probab=93.86 E-value=0.62 Score=40.27 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=66.4
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCC--hHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVD--MKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNT 228 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvD--p~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nt 228 (388)
++.....+..=...|..|-..|++-+. |.-. +..+.- .+++.. ++...+.....-|..-...|...
T Consensus 37 ~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~--------~~~~~~--~~~~~L~~A~~~E~~~~~~Y~g~ 104 (137)
T PF13668_consen 37 DPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDF--------PFDPFT--DDASFLRLAYTLEDVGVSAYKGA 104 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCcccc--------ccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555567778889999999999996 2221 111110 334432 44444444445566666667764
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVE 263 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 263 (388)
+. ...+|.+++++..|++.|.+|...++.++.
T Consensus 105 ~~---~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 105 AP---QIEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 467999999999999999999999998764
No 33
>PLN02492 ribonucleoside-diphosphate reductase
Probab=93.83 E-value=1.7 Score=43.62 Aligned_cols=116 Identities=16% Similarity=-0.014 Sum_probs=67.5
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhH-------------HHHHHHHhcCCCCCCCCCchhhHHHHHhh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE-------------RSIQYLIRSGMDHKFENNPYNGFVYASFQ 217 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE-------------~~~~~li~~G~~~~~~~~p~~~l~y~sfQ 217 (388)
.++...+...+.+.|+-|+.+-...+..-+ -|+...+ +....+. ++.. ...+.+..++.-.+.
T Consensus 86 ~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~-~d~~~~~~~f~~~~~~p~l~~K~~~~~--~~~~-~~~~~~~~lva~~~l 161 (324)
T PLN02492 86 VPEARAFYGFQIAIENIHSEMYSLLLDTYI-KDPKEKDRLFNAIETIPCVAKKADWAL--RWID-SSASFAERLVAFACV 161 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCHHHHHHHHHHH--HHHh-hhHHHHHHHHHHHhh
Confidence 567778999999999999987654443211 1443311 1111111 1111 112445555544456
Q ss_pred hhhhHHH-HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016490 218 ERATFIS-HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 270 (388)
Q Consensus 218 E~AT~i~-y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dp 270 (388)
|---+.+ +..+--+++.--=|-++++...|++||.+|-.|...++..+.+.-+
T Consensus 162 Egi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~ 215 (324)
T PLN02492 162 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS 215 (324)
T ss_pred hHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 6532211 1112223222224778999999999999999999999999886544
No 34
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.56 E-value=4.7 Score=40.89 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=58.5
Q ss_pred HHHHhhhhhhhhhhhHH----HHhHH--------hHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhH
Q 016490 155 ATWIRAWTAEENRHGDL----LNKYL--------YLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATF 222 (388)
Q Consensus 155 ~~W~~~WtAEEnRHG~a----Lr~YL--------~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~ 222 (388)
..+...+.++|+-|+.+ +..++ +-+-.-+ ..+.+..+ .+..-++. .+++..+++.++.|-.-+
T Consensus 104 ~~~l~~q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~~~-p~l~~K~~-~i~~~~~~---~~~~~~~va~~~lEGi~F 178 (335)
T PRK13965 104 QVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVST-ESLQRRAR-VLIPYYTG---DDPLKSKVAAAMMPGFLL 178 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcC-HHHHHHHH-HHHHHHhc---CcHHHHHHHHHHHHHHHH
Confidence 56779999999999994 44442 1000011 11222222 22222332 256777777777775433
Q ss_pred HH-HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 223 IS-HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 223 i~-y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
-+ ...+--+++.--=|-++++...|.+||..|-.|..-++..
T Consensus 179 ysgFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~ 221 (335)
T PRK13965 179 YGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQ 221 (335)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 21 1111123322234778999999999999999864444444
No 35
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=93.36 E-value=3.2 Score=39.81 Aligned_cols=145 Identities=18% Similarity=0.122 Sum_probs=100.2
Q ss_pred HHHHHHHHhhhccChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHh-Hh---cCCC---hHHhH
Q 016490 116 YFVVLVGEMITEEALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLY-LS---GRVD---MKQIE 188 (388)
Q Consensus 116 ~~v~Lv~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~-vs---grvD---p~~lE 188 (388)
+...+..-...|-++-....+++..-. .+.|..-.---+..|.||...+.-++. ++ ...+ -...+
T Consensus 75 l~~~~~~~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~ 146 (233)
T PF02332_consen 75 LKRHLGPLRHAEYGAQMASAYIARFAP--------GTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWL 146 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHH
T ss_pred HHHHcCCcchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHh
Confidence 344555566677777777777655443 567777777788899999998886665 32 2223 11111
Q ss_pred -----HHHHHHHhcCCCCCCCCCchhhHHHHHhh-hh-hhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 189 -----RSIQYLIRSGMDHKFENNPYNGFVYASFQ-ER-ATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 189 -----~~~~~li~~G~~~~~~~~p~~~l~y~sfQ-E~-AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
.-...++..-+-. .++...++...|+ |. -|...+..+.+.|...||..+..|+..|-.||.||..-=..+
T Consensus 147 ~~p~wq~~R~~vE~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~al 223 (233)
T PF02332_consen 147 NDPAWQPLRRLVEDLLVT---YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDAL 223 (233)
T ss_dssp HSHHHHHHHHHHHHHTTS---SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333332332 2677777777666 43 477888888889999999999999999999999999999999
Q ss_pred HHHHHhhCCc
Q 016490 262 VEKLFEIDPD 271 (388)
Q Consensus 262 v~~~le~dpd 271 (388)
|+-+++-+|+
T Consensus 224 ~~~~~~~~~~ 233 (233)
T PF02332_consen 224 FKMALEDDPN 233 (233)
T ss_dssp HHHHHCTTTH
T ss_pred HHHHHhCCCC
Confidence 9888887764
No 36
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=92.78 E-value=0.56 Score=40.68 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=67.6
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH------hhCCchHHHHHHHHHhhccCCCCC
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF------EIDPDDTILALAGMMKKRFRMPGH 290 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l------e~dpd~t~~Aia~vm~~~i~MP~~ 290 (388)
-|......|...++.|+.-|-+.++..+..+|.+|..|..-|.+.+..+- ..+...+...|...+.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~-------- 83 (134)
T cd01041 12 GESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIA-------- 83 (134)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHH--------
Confidence 46666677888899998899999999999999999999999988876631 1122333344444333
Q ss_pred cCCCCCC---cchhhhHHHHHHHhcCCChhh-HHHHHH
Q 016490 291 LMYDGQD---DKTFDHFSAVTQRLGVYTGQD-YADILE 324 (388)
Q Consensus 291 ~m~dg~~---~~lf~~~s~va~r~GvYt~~d-y~dIl~ 324 (388)
+.. ...|..+..+|.+.|-++..+ ...|++
T Consensus 84 ----~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~ 117 (134)
T cd01041 84 ----GETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAE 117 (134)
T ss_pred ----hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 146778888888888887777 333543
No 37
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=92.77 E-value=0.85 Score=39.46 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=66.8
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCCCCC
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMYDGQ 296 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~dg~ 296 (388)
-|......|...++.|+..|.|-++.....+|..|..|...|.+++.. -|..+...|...+. +.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~~~~~~~le~a~~------------~E 75 (123)
T cd01046 12 GETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VSEDTKENLEMMLE------------GE 75 (123)
T ss_pred hHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHH------------hH
Confidence 466667778888999999999999999999999999999999997643 23566666666664 32
Q ss_pred C--cchhhhHHHHHHHhcCCChhh
Q 016490 297 D--DKTFDHFSAVTQRLGVYTGQD 318 (388)
Q Consensus 297 ~--~~lf~~~s~va~r~GvYt~~d 318 (388)
. ...|..+..++.+-|-|+..+
T Consensus 76 ~~~~~~~~~~~~~A~~egd~~~~~ 99 (123)
T cd01046 76 AGANEGKKDAATEAKAEGLDEAHD 99 (123)
T ss_pred HHHHHhHHHHHHHHHHcCCHHHHH
Confidence 2 133777889999999887776
No 38
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=92.13 E-value=7.1 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=30.7
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh--hCCc
Q 016490 237 DMKLAQICGTIASDEKRHETAYTKIVEKLFE--IDPD 271 (388)
Q Consensus 237 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le--~dpd 271 (388)
=|-++++...|++||..|-.|...+++.+.. .+|+
T Consensus 225 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~~~e~p~ 261 (376)
T PRK09101 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPE 261 (376)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChh
Confidence 4668999999999999999999999999885 6665
No 39
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=92.13 E-value=9.8 Score=38.43 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=93.7
Q ss_pred cCCCCCCCCCCCCccccChHHHHHHHHHhhcCCCHHHHHHHHHHhhhccChhhHHHH-hh-hhcCCcccCCCCchhHHHH
Q 016490 80 DKSWQPTDFLPESEASEGFFEQVKELRERCKQLPAEYFVVLVGEMITEEALPTYQTM-LN-SLDGVRDETGASLTSWATW 157 (388)
Q Consensus 80 ~~~WqP~D~lPw~~~~~~F~~~~~~~r~~~~~Lpdd~~v~Lv~~~iTEd~LPtY~~~-L~-~~~gvr~~~g~~~~~w~~W 157 (388)
..-|-|.+ ||-+ ..+++|+ +||++-.-++.-.+--=-.+.+-+.. +. .+... ...++-..+
T Consensus 33 ~nfW~peE-i~l~-------~D~~dw~----~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~-----~~~pe~~~~ 95 (324)
T PRK13966 33 GNFWLPEK-VPVS-------NDIPSWG----TLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPD-----ALTPHEEAV 95 (324)
T ss_pred hCCCCccc-cCcc-------chHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh-----cCCHHHHHH
Confidence 44788888 6552 2345563 47776555444222211133333331 11 11110 124556788
Q ss_pred HhhhhhhhhhhhHHHHhHHhHhcCCChH-------------HhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHH
Q 016490 158 IRAWTAEENRHGDLLNKYLYLSGRVDMK-------------QIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFIS 224 (388)
Q Consensus 158 ~~~WtAEEnRHG~aLr~YL~vsgrvDp~-------------~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~ 224 (388)
...|.++|+-|+.+-..-+-.= +++. .+.+.. ..+..-|+. .+++..+++-++.|..-+-+
T Consensus 96 ~~~q~~~E~IHsesYs~il~tl--~~~~~~~~~f~~~~~~~~l~~K~-~~i~~~~~~---~~~~~~~va~~~lEgi~Fys 169 (324)
T PRK13966 96 LTNIAFMESVHAKSYSQIFSTL--CSTAEIDDAFRWSEENRNLQRKA-EIVLQYYRG---DEPLKRKVASTLLESFLFYS 169 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHhcCHHHHHHH-HHHHHHhcC---ChHHHHHHHHHHHhHHHHHH
Confidence 9999999999998754333311 1111 122222 222333443 24577778888888762221
Q ss_pred -HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016490 225 -HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 271 (388)
Q Consensus 225 -y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd 271 (388)
....--+++.-.=|-++++...|.+||..|-.|...++...+...|+
T Consensus 170 gF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~ 217 (324)
T PRK13966 170 GFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDD 217 (324)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCh
Confidence 11111122223356799999999999999999999999877665555
No 40
>PRK10304 ferritin; Provisional
Probab=91.95 E-value=4 Score=37.39 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=78.5
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhH-hcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~v-sgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
.+.++.|.+.=..||-.|+..|-+|+.. -|++....+..- +....++...|-..-=+|..-..++.++.
T Consensus 36 l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p----------~~~~~s~~e~~~~~l~~E~~vt~~i~~l~ 105 (165)
T PRK10304 36 FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESP----------FAEYSSLDELFQETYKHEQLITQKINELA 105 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999985 444443332211 11123666666666668888888899999
Q ss_pred HHHhhhCCHHHHHHHhHhhhh---hhHHHHHHHHHHHH
Q 016490 230 RLVKEHGDMKLAQICGTIASD---EKRHETAYTKIVEK 264 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~IAaD---E~RH~~~Y~~iv~~ 264 (388)
++|...+|++....+..+-.+ |..|....-.-++.
T Consensus 106 ~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~ 143 (165)
T PRK10304 106 HAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSL 143 (165)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 77777665555543
No 41
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.82 E-value=0.42 Score=39.76 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=42.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 216 FQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 216 fQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
-.|..+..+|...++ ..++|.++.++..||.||.+|...+..++..+-
T Consensus 8 ~~E~~~~~~Y~~~a~---~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 8 KMEEEAAEFYLELAE---KAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHh---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368888999998655 578999999999999999999999999998864
No 42
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=90.97 E-value=0.83 Score=36.09 Aligned_cols=51 Identities=29% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 213 YASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 213 y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
....-|......|...+.. ..+|.+++++..++.||.+|...+.+++..+-
T Consensus 5 ~~~~~E~~a~~~y~~~~~~---~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g 55 (130)
T cd00657 5 DALAGEYAAIIAYGQLAAR---APDPDLKDELLEIADEERRHADALAERLRELG 55 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344677778888876664 45999999999999999999999999987753
No 43
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=89.75 E-value=2.3 Score=41.85 Aligned_cols=157 Identities=16% Similarity=0.122 Sum_probs=98.1
Q ss_pred hhhhhhhhhhhHHHHhHHh-Hhc-CCChHHhHHHHHHHHhcCC------CCCCCCCchhhHHHHHhhhhhhHHHHHHHHH
Q 016490 159 RAWTAEENRHGDLLNKYLY-LSG-RVDMKQIERSIQYLIRSGM------DHKFENNPYNGFVYASFQERATFISHGNTAR 230 (388)
Q Consensus 159 ~~WtAEEnRHG~aLr~YL~-vsg-rvDp~~lE~~~~~li~~G~------~~~~~~~p~~~l~y~sfQE~AT~i~y~ntar 230 (388)
.+=..+|..|+..|-.|+- +-| ..|++.+.-.+. ...| +.+. .+=...++...|.+++-.+.+..+..
T Consensus 53 ~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~---~~~~rn~~l~e~p~-~dwa~~v~r~~l~d~~~~~~l~~l~~ 128 (263)
T PF05138_consen 53 ANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRD---AREFRNLLLFEQPN-GDWADTVARQFLFDRAGKVLLEALAD 128 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHH---TTCS-SSGGGGS----SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcc---cchhhhhhhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556789999999999986 323 235655544322 1222 2221 14456888888999998888887543
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh---hCCchHHHHHHHHHhhccCCCCCcCCCCCCcchhhhHHHH
Q 016490 231 LVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE---IDPDDTILALAGMMKKRFRMPGHLMYDGQDDKTFDHFSAV 307 (388)
Q Consensus 231 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le---~dpd~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf~~~s~v 307 (388)
+.++.|+.++.+|-++|.-|..+-.+.|.++-. .....+..||..+..-...|=| -.+. ...
T Consensus 129 ----ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~gt~es~~r~q~Al~~~wp~~~elF~-----~~~~------~~~ 193 (263)
T PF05138_consen 129 ----SSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGDGTEESRERMQAALDRLWPYTLELFG-----PDDS------EEA 193 (263)
T ss_dssp -----SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHCC------S-HC------HHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC-----CCch------HHH
Confidence 679999999999999999999999999999883 3344566677777652222211 1111 123
Q ss_pred HHHhcCCChhh-----HHHHHHHHHhhccccc
Q 016490 308 TQRLGVYTGQD-----YADILEFLIKRWGVEK 334 (388)
Q Consensus 308 a~r~GvYt~~d-----y~dIl~~ll~~W~v~~ 334 (388)
+...|+-...+ +.+.+.+++...++.-
T Consensus 194 l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 194 LAWGGRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp HHCTTSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33344332222 6667888888887654
No 44
>PRK13456 DNA protection protein DPS; Provisional
Probab=89.07 E-value=16 Score=34.73 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhc-cChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHh-H--hcCCChHHhHH
Q 016490 114 AEYFVVLVGEMITE-EALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLY-L--SGRVDMKQIER 189 (388)
Q Consensus 114 dd~~v~Lv~~~iTE-d~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~-v--sgrvDp~~lE~ 189 (388)
+.++-.|.-++-+| .+.=-|...-..+.|+ ...+.+.++..=..||.+|++.|..=++ | +.-.||..+..
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ 92 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGL------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHD 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhh
Confidence 56666677666666 2333333333345554 4556778888888899999999987665 3 33446765443
Q ss_pred HHHHHHhcCC-CCCCCCCchhhHHHHHh-hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016490 190 SIQYLIRSGM-DHKFENNPYNGFVYASF-QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVE 263 (388)
Q Consensus 190 ~~~~li~~G~-~~~~~~~p~~~l~y~sf-QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 263 (388)
+..++| +++.+.+-+..++=..+ =|+..=..|+.+-+.+. -.||+=..|.-.|=+||..|+.-|.++++
T Consensus 93 ----ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 93 ----ISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALAILQEEIEHEAWFSELLG 163 (186)
T ss_pred ----hhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667 33321112455554444 47777778998888776 34999999999999999999999888764
No 45
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=88.26 E-value=6.9 Score=33.84 Aligned_cols=113 Identities=9% Similarity=-0.014 Sum_probs=82.2
Q ss_pred CCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHH
Q 016490 147 TGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHG 226 (388)
Q Consensus 147 ~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ 226 (388)
.|.+...+...+.....||..|.+.|..-+..-|..-....+....+........ ...+.-..+-...--|..+...|+
T Consensus 25 ~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 103 (139)
T cd01043 25 KGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA-GVLSAKEMVAELLEDYETLIEELR 103 (139)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999999998656654444444433322221111 112445566666677888888899
Q ss_pred HHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHH
Q 016490 227 NTARLVKEHGDMKLAQICGTIASDEKRHETAYTK 260 (388)
Q Consensus 227 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~ 260 (388)
...+.|...+|++.+.++..|-+++..|--++..
T Consensus 104 ~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 104 EAIELADEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887789999999999999999988776654
No 46
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=88.14 E-value=1.1 Score=39.60 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=39.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 213 YASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 213 y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
-.+.-|.++...|-.-+...+ .++|.+++++..||.||.+|+..+.+++..+
T Consensus 23 ~g~~~E~~ai~~Y~y~~~~~~-~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~l 74 (154)
T cd07908 23 AGTNSELTAISQYIYQHLISE-EKYPEIAETFLGIAIVEMHHLEILGQLIVLL 74 (154)
T ss_pred CCcchHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334457777666665444433 4789999999999999999999999998773
No 47
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=86.87 E-value=3.7 Score=38.19 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCCCCCCcchh
Q 016490 222 FISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMYDGQDDKTF 301 (388)
Q Consensus 222 ~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf 301 (388)
..-|...|+.|+.-|.|.++.+...||-+|..|..-+.+++.++. .-...+..-+..++. .=. +.....|
T Consensus 20 ~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-~~~~~~~eNl~~aie-GE~--------~e~~emy 89 (166)
T COG1592 20 VMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-LVLGDTRENLEEAIE-GET--------YEITEMY 89 (166)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHc-cch--------HHHHHhC
Confidence 445777777888899999999999999999999999999999877 222333444444443 000 1223455
Q ss_pred hhHHHHHHHhc
Q 016490 302 DHFSAVTQRLG 312 (388)
Q Consensus 302 ~~~s~va~r~G 312 (388)
..|+.+++.-|
T Consensus 90 p~~ae~A~~~g 100 (166)
T COG1592 90 PVFAEVAEEEG 100 (166)
T ss_pred hHHHHHHHHcC
Confidence 56677777766
No 48
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=86.36 E-value=12 Score=39.98 Aligned_cols=136 Identities=20% Similarity=0.126 Sum_probs=83.1
Q ss_pred hhhccChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHh-Hh---cCCChHH--h-H----HHHH
Q 016490 124 MITEEALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLY-LS---GRVDMKQ--I-E----RSIQ 192 (388)
Q Consensus 124 ~iTEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~-vs---grvDp~~--l-E----~~~~ 192 (388)
...|-+|=.-+.++.+... ...+....---+.-|.||+...--|.. +. ..+|... . + ....
T Consensus 87 ~~~Ey~a~~~~a~~~R~a~--------s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~~R 158 (465)
T cd01057 87 TPGEYAAVRGMAMLGRFAP--------AAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGAAK 158 (465)
T ss_pred cHHHHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHHHH
Confidence 3445555555544433332 344666666777888888876554443 22 2233221 0 0 0011
Q ss_pred HHHhcCCCCCCCCCchhhHHHHHh-hhh-hhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016490 193 YLIRSGMDHKFENNPYNGFVYASF-QER-ATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 270 (388)
Q Consensus 193 ~li~~G~~~~~~~~p~~~l~y~sf-QE~-AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dp 270 (388)
..+...+-. .++...+++..| .|. -|...-..+++.|...||.++..|..-|-+||.||..-=...| .++..||
T Consensus 159 ~~~ed~~~t---~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll-~~l~~Dp 234 (465)
T cd01057 159 RFFFDGFIT---GDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGYPTL-VLLENDP 234 (465)
T ss_pred HHHHHHHhc---CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHH-HHHHcCc
Confidence 222222221 255655555444 344 4666666677788889999999999999999999999999999 8888898
Q ss_pred c
Q 016490 271 D 271 (388)
Q Consensus 271 d 271 (388)
+
T Consensus 235 ~ 235 (465)
T cd01057 235 D 235 (465)
T ss_pred c
Confidence 6
No 49
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=85.45 E-value=1.5 Score=44.64 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 222 FISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 222 ~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+-|.-++|..+ ..+|+|+++.+..|+||+||..|--+.++.
T Consensus 89 flLYKEl~rrlk-~~~P~lae~F~~MaRDEARHAGFlNkam~d 130 (337)
T TIGR02029 89 FLLYKELSRRLK-NRDPVVAELFQLMARDEARHAGFLNKALGD 130 (337)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 455777777654 369999999999999999999998877766
No 50
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=84.91 E-value=7.3 Score=36.73 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=76.9
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcC----CChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR----VDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHG 226 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgr----vDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ 226 (388)
.+++..=+..=.-||.+|=.-..+-+.--|. ..+...-.....+++.| +| .--+..|+..++.|. =||-
T Consensus 47 ~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~-~p---~~llD~Llv~alIEA---RScE 119 (180)
T cd07910 47 KPELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKG-EP---ERLLDRLLVAALIEA---RSCE 119 (180)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccC-Ch---HHHHHHHHHHHHHHH---HhHH
Confidence 4555555666778999997777666654332 12222222223333332 22 244678999999984 4677
Q ss_pred HHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 227 NTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 227 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
..+.+|....|+.|++....+..-|+|||.-|.++-..+++
T Consensus 120 RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 120 RFALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 77888876689999999999999999999999999999886
No 51
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=84.38 E-value=13 Score=31.88 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=58.4
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTAR 230 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntar 230 (388)
++.-..-...=..+|-+|...+++++---|..-+..-.+...+.+-..+. ++...+-..--.|..+-.+|..++.
T Consensus 26 ~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~l~~~~~~E~~ai~~Y~~~~~ 100 (125)
T cd01044 26 DPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARIF-----GPTFVLKLLERGEERAIEKYDRLLE 100 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHH-----hHHHHHHHHHHhHHhhHhhHHhhhh
Confidence 34455556667788999999999998643332211111111111111110 1111222222368889999998655
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016490 231 LVKEHGDMKLAQICGTIASDEKRHETAYTKIVE 263 (388)
Q Consensus 231 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 263 (388)
. ..++.+|..||..|+.-+.++.+
T Consensus 101 ~---------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 101 E---------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred h---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 55778899999999998887754
No 52
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=84.32 E-value=15 Score=42.52 Aligned_cols=152 Identities=17% Similarity=0.097 Sum_probs=101.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhhccChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCC
Q 016490 104 ELRERCKQLPAEYFVVLVGEMITEEALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVD 183 (388)
Q Consensus 104 ~~r~~~~~Lpdd~~v~Lv~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvD 183 (388)
+|-.+.+-=.+-..-+|..++-.|...=.|-+.++.--. +..-......=..||.+|-+.|.+.+-- ..
T Consensus 849 ~~~~~~~~~~~~~~eil~~Ai~mE~~g~~FY~~~A~~a~--------~~~~K~lF~~LA~eE~~H~~~l~~~~~~---~~ 917 (1006)
T PRK12775 849 QALDRRKVEDAAALEAIRTAFEIELGGMAFYARAAKETS--------DPVLKELFLKFAGMEQEHMATLARRYHA---AA 917 (1006)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc
Confidence 333333333355666788888889887777777765543 6677778888889999999998777631 11
Q ss_pred hHHhHHH-HH-HHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCH-HHHHHHhHhhhhhhHHHHHHHH
Q 016490 184 MKQIERS-IQ-YLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHGDM-KLAQICGTIASDEKRHETAYTK 260 (388)
Q Consensus 184 p~~lE~~-~~-~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdP-vLa~I~~~IAaDE~RH~~~Y~~ 260 (388)
|..-+.+ .. ...-.++... ..++...+-+..-.|..+-.+|..+++ .+.|+ ..++|+..||.-|..|.....+
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~lAm~~Ekdai~fY~~la~---~~~d~e~~k~l~~~LA~EEk~Hl~~L~~ 993 (1006)
T PRK12775 918 PSPTEGFKIERAAIMAGVKGR-PDDPGNLFRIAIEFERRAVKFFKERVA---ETPDGSVERQLYKELAAEEREHVALLTT 993 (1006)
T ss_pred CCcccccccchhhhhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHh---hCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 00 0111112111 235667777778899999999998665 56787 5899999999999999999999
Q ss_pred HHHHHHhhCC
Q 016490 261 IVEKLFEIDP 270 (388)
Q Consensus 261 iv~~~le~dp 270 (388)
.++++-+-.|
T Consensus 994 ~~d~~~~~~~ 1003 (1006)
T PRK12775 994 EFERWKQGKP 1003 (1006)
T ss_pred HHHHHhccCC
Confidence 9988765443
No 53
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=3.2 Score=38.55 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=50.3
Q ss_pred CchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016490 206 NPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 269 (388)
Q Consensus 206 ~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 269 (388)
+....+.+.--.|..---+|..+++. ..|+.++++...||.||.+|..-|.+++.+....+
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~---~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER---IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44566777777888888899986664 67999999999999999999999999988754433
No 54
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=83.91 E-value=20 Score=35.28 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=43.9
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHh
Q 016490 234 EHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMK 282 (388)
Q Consensus 234 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~ 282 (388)
..||...+.|+..|-.||..|-++=.+-++.+-+..+.+....+...+.
T Consensus 177 ~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv~ 225 (253)
T PF04305_consen 177 SAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELVR 225 (253)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 4799999999999999999999998888888888888777888988886
No 55
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=83.78 E-value=7.8 Score=34.85 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=79.4
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
-+.++.|.+.=..||-.|+..|-+|+. .-|++....+.... ...| .++...|-..-=.|..-...+.++.
T Consensus 36 l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~----~~~~-----~~~~e~~e~al~~Ek~v~~~i~~l~ 106 (160)
T cd00904 36 LKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP----SDEW-----GGTLDAMEAALKLEKFVNQALLDLH 106 (160)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc----cccc-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998 44455544444321 0011 3566667666678888888888899
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHH
Q 016490 230 RLVKEHGDMKLAQICGT-IASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~l 266 (388)
++|...+|++....+.. .=.+-..-.+-+.+++..+-
T Consensus 107 ~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~ 144 (160)
T cd00904 107 ELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLE 144 (160)
T ss_pred HHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Confidence 99988899999998887 76676777777777776543
No 56
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=82.53 E-value=2.3 Score=43.04 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 220 ATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 220 AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.-.+-|.-++|..+.. +|+|+++.+..|+||+||..|--+.++.
T Consensus 77 SGflLYKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkam~d 120 (323)
T cd01047 77 SGFLLYKELGRRLKNT-NPVVAELFRLMARDEARHAGFLNKALSD 120 (323)
T ss_pred hhHHHHHHHHHHcccC-CcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 3355677777765433 7999999999999999999998877765
No 57
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=82.40 E-value=6.6 Score=34.55 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=62.7
Q ss_pred hhhhhhhhHHHHhHHhHhcCCChHHhH---H---H-HHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhh
Q 016490 162 TAEENRHGDLLNKYLYLSGRVDMKQIE---R---S-IQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKE 234 (388)
Q Consensus 162 tAEEnRHG~aLr~YL~vsgrvDp~~lE---~---~-~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~ 234 (388)
..+|.+|-+.|..-+---+--+|..-. . . ...++..|. .+....+-..+-.|...--+|..+++ .
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~-----~s~~~al~~g~~~E~~~i~~ye~~~~---~ 107 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGP-----KSLQDALEVGVLIEELDIADYDRLLE---R 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 478999999998887632222222110 0 0 001111211 24566777778889999999998544 6
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016490 235 HGDMKLAQICGTIASDEKRHETAYTKI 261 (388)
Q Consensus 235 ~gdPvLa~I~~~IAaDE~RH~~~Y~~i 261 (388)
+.||.+++++.+++.-|..|+..|.+-
T Consensus 108 ~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 108 TQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999988763
No 58
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=82.37 E-value=2.4 Score=43.30 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 222 FISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 222 ~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+-|.-++|..+ ..+|+|+++.+..|+||+||..|--+.++.
T Consensus 95 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~d 136 (351)
T CHL00185 95 FLLYKELSRKLK-DKNPLLAEGFLLMSRDEARHAGFLNKAMSD 136 (351)
T ss_pred hHHHHHHHHHhc-cCCcHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 455777777654 247999999999999999999998887776
No 59
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.82 E-value=2.5 Score=43.32 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 222 FISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 222 ~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+-|.-++|..+. .+|.|+++.+..|+||+||..|--+.++.
T Consensus 99 flLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~d 140 (355)
T PRK13654 99 FLLYKELSRRLKD-RNPLLAELFQLMARDEARHAGFLNKAMKD 140 (355)
T ss_pred HHHHHHHHHhccc-cCcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 4457777776543 38999999999999999999998887766
No 60
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=81.01 E-value=2.3 Score=43.57 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 222 FISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 222 ~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+-|..++|..+. .+|+|+++.+..|+||+||..|--+.++.
T Consensus 95 flLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 95 FLLYKELGRRLKK-TNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred chHHHHHHHhccc-CChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 4557777775542 47999999999999999999998888776
No 61
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=80.44 E-value=27 Score=35.02 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=75.9
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCC-ChHHhHHH------------HHHHHhcCCCCCCCCCchhhHHHHHh
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLY-LSGRV-DMKQIERS------------IQYLIRSGMDHKFENNPYNGFVYASF 216 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrv-Dp~~lE~~------------~~~li~~G~~~~~~~~p~~~l~y~sf 216 (388)
.+.+....---+.-|.||+.-+-.|.. +++.. ++. .... ...++...+-. .++...++...|
T Consensus 128 ~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~~~k~~W~~dp~Wq~~R~~~E~~~~~---~Dw~E~~va~nl 203 (304)
T cd01058 128 STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GDAAKEAWEEDPAWQGLRELVEKLLVT---YDWGEAFVAQNL 203 (304)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-chHHHHHHhcCchhHHHHHHHHHHHhh---ccHHHHHHHHHH
Confidence 345666666677888888888776653 44432 220 1111 11122221111 145555555444
Q ss_pred h-h-hhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc
Q 016490 217 Q-E-RATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 271 (388)
Q Consensus 217 Q-E-~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd 271 (388)
+ | .-|...+..+.+.|...||..+..|..-+-.||.||..-=..+|+-+++-+|+
T Consensus 204 v~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~alvk~l~~~~~~ 260 (304)
T cd01058 204 VFDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH 260 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccChh
Confidence 2 3 34667777788888889999999999999999999999999999977776565
No 62
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=79.38 E-value=3.3 Score=42.13 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=27.5
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIER 189 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~ 189 (388)
.-|...|...|--.|||||+....-+ +.+|..+..
T Consensus 184 ~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~g 218 (337)
T TIGR02029 184 FYPIFKYFESWCQDENRHGDAFAALM----RSQPQLLNN 218 (337)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----hcChhhhhh
Confidence 35788999999999999999988766 345655543
No 63
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=78.33 E-value=2.9 Score=42.34 Aligned_cols=54 Identities=19% Similarity=0.417 Sum_probs=34.5
Q ss_pred hHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHH
Q 016490 132 TYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIER 189 (388)
Q Consensus 132 tY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~ 189 (388)
+|-++|.-+-......-...-|...|...|--.|||||+....-+ +.+|..+..
T Consensus 155 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~~ 208 (323)
T cd01047 155 GYWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALL----RAQPHLLND 208 (323)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHH----hcChhhhhh
Confidence 345555433332222212235788999999999999999988766 346665544
No 64
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=76.43 E-value=3.6 Score=42.12 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=27.3
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIER 189 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~ 189 (388)
.-|...|...|--.|||||+....-+ +.+|..+..
T Consensus 190 ~~PIFk~Fe~WCqDEnRHGd~Fa~lm----raqP~ll~g 224 (357)
T PLN02508 190 LYPIFKYFENWCQDENRHGDFFSALL----KAQPQFLND 224 (357)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----HcChhhhhh
Confidence 35788999999999999999988766 345555443
No 65
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=75.70 E-value=10 Score=35.68 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=84.7
Q ss_pred HHHhhhhhhhhhhhHHHHhHHhHhcCCChHHh--HHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHh
Q 016490 156 TWIRAWTAEENRHGDLLNKYLYLSGRVDMKQI--ERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVK 233 (388)
Q Consensus 156 ~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~l--E~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~ 233 (388)
.=+..-.-||.+|=...+..|.- |.+--+-+ .++..-+... ....++..-...++-+++.|. -||...|.+|-
T Consensus 62 ~km~~larEEL~HFeqV~eilq~-RnI~~~~i~asrYa~~l~~~-~rt~EPqrliD~Livga~IEA---RScERfa~Lap 136 (203)
T COG4445 62 DKMVLLAREELHHFEQVLEILQA-RNIPYVPIPASRYAKGLLAA-VRTHEPQRLIDKLIVGAYIEA---RSCERFAALAP 136 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCccHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhh---hhHHHHHhhcc
Confidence 33445667999998888887754 33322221 1111111111 111111244678888888884 46788888886
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh-CCchHHHHHHHHHhhccCCC
Q 016490 234 EHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI-DPDDTILALAGMMKKRFRMP 288 (388)
Q Consensus 234 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~-dpd~t~~Aia~vm~~~i~MP 288 (388)
.+ |..|++...-+-+-|+|||.-|..+-..+++. |=.+.+.-|+.+=..-|.-|
T Consensus 137 hl-deelakFY~gLl~SEaRHfqdYl~LA~qy~d~~dvs~rv~~~~~vEaeLi~sp 191 (203)
T COG4445 137 HL-DEELAKFYKGLLRSEARHFQDYLVLADQYFDEEDVSQRVDYFGIVEAELISSP 191 (203)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 55 55999999999999999999999999999988 77788877777655445444
No 66
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=75.20 E-value=4.6 Score=41.34 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=27.0
Q ss_pred hhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhHH
Q 016490 152 TSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIER 189 (388)
Q Consensus 152 ~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~ 189 (388)
-|..+|...|--.|||||+....-+ +.+|..+..
T Consensus 191 ~PIF~~FE~WCqDEnRHGdfF~alm----raqP~ll~g 224 (351)
T CHL00185 191 YPIFKFFESWCQDENRHGDFFAALL----KSQPHLLNG 224 (351)
T ss_pred chHHHHHHHHhcccchhHHHHHHHH----hcChhhhhh
Confidence 5788999999999999999988766 345655544
No 67
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=72.46 E-value=3.5 Score=42.31 Aligned_cols=34 Identities=26% Similarity=0.605 Sum_probs=26.6
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHhH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE 188 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE 188 (388)
.-|...|...|--.|||||+....-+ +.+|..+.
T Consensus 194 ~~PIF~~Fe~WCqDEnRHGd~F~~lm----raqP~ll~ 227 (355)
T PRK13654 194 FHPIFKFFENWCQDENRHGDFFALLM----RAQPKLLK 227 (355)
T ss_pred cCchHHHHHHHhcccchhHHHHHHHH----hcCchhhc
Confidence 35788999999999999999988766 34555543
No 68
>PRK15022 ferritin-like protein; Provisional
Probab=71.88 E-value=85 Score=29.11 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=72.8
Q ss_pred chhHHHHHhhhhhhhhhhhHHHHhHHhH-hcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH
Q 016490 151 LTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA 229 (388)
Q Consensus 151 ~~~w~~W~~~WtAEEnRHG~aLr~YL~v-sgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta 229 (388)
-++++.|...=..||--|+.-|-+|+.- .|++--..+..- +...+++...|-.+-=+|+.-..+..++.
T Consensus 36 L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P----------~~~~~s~~e~fe~al~hEk~vt~~I~~L~ 105 (167)
T PRK15022 36 LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVP----------GEKLNSLEELFQKTLEEYEQRSSTLAQLA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999973 334333333321 11123777888888889999999999999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 230 RLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 230 rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
++|...+|+.....+.--=....-=++-+.+++++
T Consensus 106 ~~A~~~~D~~t~~FL~wfv~EQ~eEe~~~~~ild~ 140 (167)
T PRK15022 106 DEAKALNDDSTLNFLRDLEKEQQHDGLLLQTILDE 140 (167)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998777664333222222344444444
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=70.45 E-value=6.8 Score=45.34 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=42.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 212 VYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 212 ~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
-+.-=-|.....||..+++ ..++|.+++|...+|..|..|+..|.++++.
T Consensus 866 ~~Ai~mE~~g~~FY~~~A~---~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 866 RTAFEIELGGMAFYARAAK---ETSDPVLKELFLKFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334469999999998555 6789999999999999999999999888764
No 70
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=64.76 E-value=8.8 Score=33.76 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=38.1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 210 GFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 210 ~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.+.|.-=-|.-...+|..+++ .+| +.++...||..|.+|+.+..+++++
T Consensus 4 ~L~~Ale~Ek~a~~~Y~~~~~---k~~---~~~~F~~la~~E~~H~~~l~~L~~~ 52 (135)
T cd01048 4 ALLYALEEEKLARDVYLALYE---KFG---GLRPFSNIAESEQRHMDALKTLLER 52 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhc---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567888899998665 354 7899999999999999987777665
No 71
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=61.37 E-value=44 Score=32.93 Aligned_cols=126 Identities=16% Similarity=0.205 Sum_probs=67.2
Q ss_pred HHHHHhhhccChhhHHHHhhhhcCCcccCCCCchhHHHHHhhhhhhhhhhhHHHHhHHhHhcCCChHHh--HHHHHHHHh
Q 016490 119 VLVGEMITEEALPTYQTMLNSLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQI--ERSIQYLIR 196 (388)
Q Consensus 119 ~Lv~~~iTEd~LPtY~~~L~~~~gvr~~~g~~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsgrvDp~~l--E~~~~~li~ 196 (388)
-+...++...+.|.+...+...- .=.-||..|=.-.-+-+.- |.+.-..+ ..+...+++
T Consensus 85 ~~~~~~~~~~~~P~~~eLv~~Ms------------------~LarEEL~HFeqVl~im~~-RGi~l~~~~~d~Ya~~L~k 145 (240)
T PF06175_consen 85 QLSKSLQPKSHYPEKEELVDKMS------------------RLAREELHHFEQVLEIMKK-RGIPLGPDRKDRYAKGLRK 145 (240)
T ss_dssp ---------------HHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-TT---------SHHHHHHT
T ss_pred cccccccccccccccHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHH
Confidence 34455556677777776554332 3345777776555554432 22222221 122333333
Q ss_pred cCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016490 197 SGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 268 (388)
Q Consensus 197 ~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 268 (388)
. .....+.--+..|+..++.|. =|+-..+.+|... |+-|++....+..=|+|||.-|.++-..++..
T Consensus 146 ~-vR~~ep~~lvDrLLv~AlIEA---RSCERF~lLa~~l-D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~~~ 212 (240)
T PF06175_consen 146 H-VRKGEPERLVDRLLVGALIEA---RSCERFALLAEHL-DEELAKFYRSLLRSEARHYQDYLKLARQYFDE 212 (240)
T ss_dssp T-S-SSTTHHHHHHHHHHHHHHH---HHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHHHHHHHCCCS-H
T ss_pred h-ccCCchHhHHHHHHHHHhHhh---hhHHHHHHHHHhh-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCc
Confidence 2 222222234678999999995 4677777788767 99999999999999999999999888777654
No 72
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=60.67 E-value=1.9e+02 Score=29.17 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred hhhhhhhhhHHHHhHHhHhcCCChHHhHHH----HHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhC
Q 016490 161 WTAEENRHGDLLNKYLYLSGRVDMKQIERS----IQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHG 236 (388)
Q Consensus 161 WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~----~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~g 236 (388)
=..+|.-||..|-.|+--=|.-+.+.+... ..+. +=|+.+.. +-....+-..|...+-.+.+.. +.+ +.
T Consensus 62 iaqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~~f~--nl~e~P~~-dwA~tivr~~l~D~~~~~~~~~---L~~-SS 134 (289)
T TIGR02156 62 KVQDEAGHGLYLYAAAETLGVSREELLDALLTGKAKYS--SIFNYPTL-TWADIGVIGWLVDGAAIMNQTP---LCR-CS 134 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChHhhc--cchhCCCC-CHHHHHHHHHHHHHHHHHHHHH---Hhc-CC
Confidence 345678899999888872244333322211 1111 11333322 3233444444555444444443 432 67
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC---chHHHHHHHHHhhccCCCCCcCCCCCCcchhhhHHHHHHHhcC
Q 016490 237 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DDTILALAGMMKKRFRMPGHLMYDGQDDKTFDHFSAVTQRLGV 313 (388)
Q Consensus 237 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dp---d~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf~~~s~va~r~Gv 313 (388)
++.|+.|+.+|-+.|.-|..+=.+.|.++-+-.+ ..+-.||..+..-...|=| .+|... ..++.+.+.||
T Consensus 135 y~plA~ia~Ki~KEe~yH~rh~~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~~emFg--~~d~e~-----~~~~~~~~~Gi 207 (289)
T TIGR02156 135 YGPYSRAMVRICKEESFHQRQGYEIMLTLARGTQEQRQMAQDALNRWWWPSLMMFG--PHDADS-----PNSGQSTKWKI 207 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC--CCchhh-----hhHHHHHhCCC
Confidence 9999999999999999999999999999865322 2344577666652222211 111111 13455566677
Q ss_pred C--Chhh----HHHHHHHHHhhcccc
Q 016490 314 Y--TGQD----YADILEFLIKRWGVE 333 (388)
Q Consensus 314 Y--t~~d----y~dIl~~ll~~W~v~ 333 (388)
- ++.+ +.+.+.+++..-++.
T Consensus 208 ~~~~n~eLR~~w~~~v~~~l~~agL~ 233 (289)
T TIGR02156 208 KRNSNDELRQKFIDATVPQLESLGLT 233 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6 4433 666777777766544
No 73
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=60.30 E-value=1.8e+02 Score=28.56 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=76.2
Q ss_pred hhhhhhhhhHHHHhHHhHhcCCChHHhHHHHH---HHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCC
Q 016490 161 WTAEENRHGDLLNKYLYLSGRVDMKQIERSIQ---YLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHGD 237 (388)
Q Consensus 161 WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~---~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gd 237 (388)
=.-+|.-|+..|-.|+---+..|.+.+.-.+. +.-..=++.+. .+-...++-..|...+..+.+..+.. +.+
T Consensus 31 ialD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~-gdwa~tv~r~~l~d~~~~~~l~~L~~----ss~ 105 (237)
T TIGR02158 31 IALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPN-GDFALTIARQFLYDAYKVLLLEALTQ----SRD 105 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh----CCc
Confidence 34577889999999987323347666542211 11111112221 14445666666777777776665333 679
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC---chHHHHHHHHHh
Q 016490 238 MKLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DDTILALAGMMK 282 (388)
Q Consensus 238 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dp---d~t~~Aia~vm~ 282 (388)
+.|+.|+.+|-+.|..|..+=.+.|.++-+-.. ..+-.|+..+..
T Consensus 106 ~pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt~es~~r~Q~Ald~~wp 153 (237)
T TIGR02158 106 VPLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWP 153 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875433 345557777665
No 74
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=60.01 E-value=83 Score=31.71 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHH---------------HHHHhcCCCCCCCC-------------
Q 016490 155 ATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSI---------------QYLIRSGMDHKFEN------------- 205 (388)
Q Consensus 155 ~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~---------------~~li~~G~~~~~~~------------- 205 (388)
..-+..=+.||--|=..|..=+. +.+.......+... ++.+..|.-+..-+
T Consensus 56 kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~ 135 (283)
T PF05067_consen 56 KDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQA 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhh
Confidence 45566677899999988888777 66666555555442 34555555443211
Q ss_pred --CchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016490 206 --NPYNGFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 269 (388)
Q Consensus 206 --~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 269 (388)
+++.-|-.-..-|..-++-|.++-+ -++||..+++|+-+-+=|.-|...|.+.++.+=+..
T Consensus 136 sGdl~aDL~~NiaAE~~AR~~yerL~~---mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 136 SGDLIADLRSNIAAEQRARLQYERLYE---MTDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHT---T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555666666777777888887555 488999999999999999999999999998876666
No 75
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=58.55 E-value=29 Score=30.40 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.|......|...+..++..|-|.++..+..+|.+|..|...+.+++..
T Consensus 14 ~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~ 61 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLND 61 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888899999999999999999999988887754
No 76
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=56.79 E-value=42 Score=32.68 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=52.9
Q ss_pred hhhhhhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhCCH
Q 016490 159 RAWTAEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHGDM 238 (388)
Q Consensus 159 ~~WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~gdP 238 (388)
..|++||.-=+.=+.+|-.+ ++. |+. .+. ..+.+-++-|..-.... +..+......|
T Consensus 29 ~fW~peEi~~~~D~~~~~~L----s~~--e~~---~~~------------~~l~~~~~~D~~v~~~l--~~~i~~~~~~~ 85 (281)
T PF00268_consen 29 NFWTPEEIDMSKDIKDWKKL----SEE--ERE---AYK------------RILAFFAQLDSLVSENL--LPNIMPEITSP 85 (281)
T ss_dssp T---GGGS-GGGHHHHHHHS-----HH--HHH---HHH------------HHHHHHHHHHHHHHHHH--HHHHHHHCSSH
T ss_pred CCCCchhcChhhhHHHHHhC----CHH--HHH---HHH------------HHHHHHHHHHhHHHhhH--HHHHHHHcCHH
Confidence 48999998777666666643 111 111 111 13333333333222222 02344456799
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 239 KLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 239 vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
-++.+++..+..|+.|..+|..+++.+. .++..
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~ 118 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKE 118 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 9999999999999999999999999987 44443
No 77
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=54.21 E-value=30 Score=28.69 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 225 HGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 225 y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
|.++|+=|...||+||++=|- -|..+|.+|+...-
T Consensus 42 Y~~LArDA~ssGDrV~aEny~-------QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 42 YNQLARDAQSSGDRVLAENYL-------QHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 899999888899999998886 79999999997653
No 78
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=53.66 E-value=34 Score=29.62 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
-|......|.+.+..++..+-|.++..+..+|.||..|..-+.+.+..
T Consensus 16 ~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 16 GELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556668877777777788999999999999999999888777754
No 79
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=48.96 E-value=66 Score=32.53 Aligned_cols=80 Identities=19% Similarity=0.098 Sum_probs=66.8
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHHhhhCC----HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhh
Q 016490 208 YNGFVYASFQERATFISHGNTARLVKEHGD----MKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKK 283 (388)
Q Consensus 208 ~~~l~y~sfQE~AT~i~y~ntarla~~~gd----PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~ 283 (388)
...++..++.|-+.-.||++++++- ..| +...+-.++=.+.|+||-.+-.+++-..=.+||...-......+++
T Consensus 61 ~~~l~~~~itEd~LP~Y~~~L~~~f--~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~ 138 (297)
T cd01050 61 RVALVGNLLTEEALPTYHSMLNRLF--GLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGS 138 (297)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHc--CcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Confidence 4588889999999999999988862 134 8899999999999999999988888777778998877777787877
Q ss_pred ccCCCC
Q 016490 284 RFRMPG 289 (388)
Q Consensus 284 ~i~MP~ 289 (388)
+|.+|.
T Consensus 139 G~~~~~ 144 (297)
T cd01050 139 GFDPGT 144 (297)
T ss_pred CCCCCC
Confidence 887653
No 80
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=48.36 E-value=3.2e+02 Score=28.00 Aligned_cols=159 Identities=16% Similarity=0.041 Sum_probs=91.0
Q ss_pred hhhhhhhhhHHHHhHHhHhcCCChHHhHHH----HHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHHHHhhhC
Q 016490 161 WTAEENRHGDLLNKYLYLSGRVDMKQIERS----IQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTARLVKEHG 236 (388)
Q Consensus 161 WtAEEnRHG~aLr~YL~vsgrvDp~~lE~~----~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntarla~~~g 236 (388)
=..+|.-||..|-.|+--=|.-+.+.+... ..++ +-|+.+.. +-....+-..|...+-.+.+.. +.+ +.
T Consensus 80 iaqDelGHa~~ly~~aeeLG~~r~e~~~a~~r~~~~f~--n~fe~P~~-dwAdtvvr~~L~D~a~~~~~~~---L~~-sS 152 (314)
T PRK13778 80 KVQDEAGHGLYLYSAAETLGVSREELIDDLLSGKAKYS--SIFNYPTL-TWADVGVIGWLVDGAAIMNQVP---LCR-CS 152 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcchHHhc--ccccCCCC-CHHHHHHHHHHHHHHHHHHHHH---Hhc-CC
Confidence 345678899999999872244344433322 2221 22554432 3334445555555555444444 442 67
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCc---hHHHHHHHHHhhccCCCCCcCCCCCCcchhhhHHHHHHHhcC
Q 016490 237 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMKKRFRMPGHLMYDGQDDKTFDHFSAVTQRLGV 313 (388)
Q Consensus 237 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd---~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf~~~s~va~r~Gv 313 (388)
++.|+.|+.+|-+.|.-|..+=...|.++-+-.+. .+-.||..+..-...|= ..+|... ..++..-+-||
T Consensus 153 y~plA~~a~Ki~KEe~yH~rhg~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~~emF--g~~d~~s-----~~~~~~~~~Gi 225 (314)
T PRK13778 153 YGPYARAMVRICKEESFHQRQGEEILLALARGTPAQKQMAQDALNRWWWPALMMF--GPPDDDS-----PHSAQSMAWKI 225 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhc--CCCcchh-----hhHHHHHHhCC
Confidence 99999999999999999999999999998764332 23446666554212221 1112111 12444445555
Q ss_pred C--Ch---hh-HHHHHHHHHhhcccc
Q 016490 314 Y--TG---QD-YADILEFLIKRWGVE 333 (388)
Q Consensus 314 Y--t~---~d-y~dIl~~ll~~W~v~ 333 (388)
- ++ ++ +.+.+.+++..-++.
T Consensus 226 k~~~n~eLR~~w~~~v~~~l~~~gL~ 251 (314)
T PRK13778 226 KRFSNDELRQKFVDATVPQAEVLGLT 251 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 5 22 23 666777777766544
No 81
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=48.02 E-value=95 Score=32.97 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=69.5
Q ss_pred HhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhc--------CCCCCCCCCchhhHHHHHhhhhhhHHHHHHH
Q 016490 158 IRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRS--------GMDHKFENNPYNGFVYASFQERATFISHGNT 228 (388)
Q Consensus 158 ~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~--------G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nt 228 (388)
+-+=-.||.||+=++-.-|. --|+-.-+..|+......++ .|...++ +=+..|++|+|.-+.-..--..
T Consensus 142 lfqvnvEEgRHlWaMvyLL~k~FG~dGreeAe~LL~rrsGd~d~PRiL~AFN~~t~-dWlsffmFT~ftDRdGk~QL~a- 219 (471)
T TIGR03225 142 LFQVNVEEGRHLWAMVYLLHKYFGRDGREEAEALLRRRSGDADNPRILGAFNEKTP-DWLSFFMFTYFTDRDGKMQLAA- 219 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHhhcCCCCCcchhhhccCCCc-cHHHHhHhheeecccchhhHHH-
Confidence 34567899999977654441 23555555555543333333 2433332 4477999999999877654443
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 268 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 268 (388)
++. ++=--|+++|.-.-..|+-|+.+=..-|+++++.
T Consensus 220 --lae-S~FdPLaRt~rfMltEEahHmfvGetGv~rviqr 256 (471)
T TIGR03225 220 --LAE-SGFDPLSRTCRFMLTEEAHHMFVGESGVGRVIER 256 (471)
T ss_pred --HHh-cCCchHhhhhHHHhhhhHhHhhhhhHHHHHHHHH
Confidence 442 4433488999999999999999888777776654
No 82
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=47.76 E-value=46 Score=31.98 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHhhhCCHHHHHHHhHhhh--------------hhhHH--HHHHHHHHHHHHhhCCchHHHHHHHHHh
Q 016490 219 RATFISHGNTARLVKEHGDMKLAQICGTIAS--------------DEKRH--ETAYTKIVEKLFEIDPDDTILALAGMMK 282 (388)
Q Consensus 219 ~AT~i~y~ntarla~~~gdPvLa~I~~~IAa--------------DE~RH--~~~Y~~iv~~~le~dpd~t~~Aia~vm~ 282 (388)
.+-.-||..+++ .+++|+|..+++.|.. ..... ...+.+|++++...||+.+-.|+...+.
T Consensus 149 ~aD~~FH~aIa~---as~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~am~~hl~ 225 (241)
T COG2186 149 EADLAFHLAIAE---ASGNPVLLLLLEALWDLLRRSVRASTLAALARDETVVLEEHRAIVDAIAAGDPDAAREAMRAHLE 225 (241)
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHhhchhhcccccchhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445778998666 5889999999886550 11122 5778889999999999999888887775
No 83
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=47.76 E-value=33 Score=31.93 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=34.4
Q ss_pred HHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 227 NTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 227 ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
..+..|+..|+.-.+.-...++.||++|...|+..++.+.+
T Consensus 91 ~~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 91 VFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34456667888899999999999999999999999988754
No 84
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=46.80 E-value=2.5e+02 Score=26.33 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=71.3
Q ss_pred CchhHHHHHhhhhhhhhhhhHHHHhHHhHhc-CCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHH
Q 016490 150 SLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNT 228 (388)
Q Consensus 150 ~~~~w~~W~~~WtAEEnRHG~aLr~YL~vsg-rvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nt 228 (388)
+-++.+.|++.=+.||..|+.-|=+|+.-+| ++--..++ ..+.+ .++|...|--+-=+|.--...-.++
T Consensus 35 ~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~-------~P~~~---~~s~~e~f~~tlehEq~vt~~I~~L 104 (167)
T COG1528 35 SLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIE-------APPNK---FSSLKELFEKTLEHEQKVTSSINEL 104 (167)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcC-------CCccc---cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999996422 11212222 11222 2367777777777888777778888
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 268 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 268 (388)
+..|...+|-.--.-+.--=++=..-+.-|..|++++--+
T Consensus 105 ~~~a~~~kD~~T~nFLqWfv~EQ~eEe~l~~~I~d~~~~a 144 (167)
T COG1528 105 AEVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKLELA 144 (167)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8887766665555555544444445555666666654333
No 85
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=43.07 E-value=91 Score=26.79 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHH
Q 016490 218 ERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILAL 277 (388)
Q Consensus 218 E~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Ai 277 (388)
|......|.+....++..+.+.++..+..++.+|..|...+.+.+.. +.-.|...+..+
T Consensus 18 e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~-lGg~p~~~~~~~ 76 (148)
T cd01052 18 EWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYE-LGGTPPRDPKDW 76 (148)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHH
Confidence 44555667777777766778899999999999999999999888876 777787765443
No 86
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=42.98 E-value=79 Score=30.89 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.0
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 235 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 235 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
.+.|-.+..++..+.+|++|..+|..+++.+..
T Consensus 75 ~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~ 107 (280)
T cd07911 75 EGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGV 107 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357888999999999999999999999988743
No 87
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=40.85 E-value=48 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 238 MKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 238 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
|-.+..+...+.+|++|..+|..+++.+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l 122 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAV 122 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999764
No 88
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.36 E-value=3.1e+02 Score=27.42 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=50.0
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCCCCCCcchhhhHH
Q 016490 229 ARLVKEHGDMKLAQICGTIASDEKRHET---AYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMYDGQDDKTFDHFS 305 (388)
Q Consensus 229 arla~~~gdPvLa~I~~~IAaDE~RH~~---~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf~~~s 305 (388)
+|++ ++||-.-+.|+..|=.||.-|-+ -+++++-+=-..|| +.-|...+++.+.-|-.. + |.
T Consensus 181 aK~~-~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp---~~~FreL~r~y~~~~lkg------~-----~N 245 (268)
T COG2833 181 AKLA-ETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDP---AATFRELVRAYFRFILKG------P-----FN 245 (268)
T ss_pred HHHH-HcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCCh---HHHHHHHHHHhCCcccCC------c-----cc
Confidence 4555 47888889999999999999964 34444444444555 666777776444433111 1 22
Q ss_pred HHH-HHhcCCChhhHHHHHH
Q 016490 306 AVT-QRLGVYTGQDYADILE 324 (388)
Q Consensus 306 ~va-~r~GvYt~~dy~dIl~ 324 (388)
..| .++| +|+..|+.|-+
T Consensus 246 ~~AR~~AG-fT~~e~d~i~~ 264 (268)
T COG2833 246 IDARAKAG-FTQSEYDSIEA 264 (268)
T ss_pred HHHHHHcC-CCHHHHHHHHH
Confidence 223 3477 89888876643
No 89
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=39.13 E-value=70 Score=29.08 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=44.3
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 210 GFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 210 ~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
.-.-.++-|..+.+-|-.-+-..+ .+|.++.++..||.+|..|...+...+..+.+
T Consensus 27 ~~~gG~~gEl~ai~qYl~q~~~~~--~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 27 EQLGGAFGELSAAMQYLFQSFNFR--EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred HHhCCccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455678888887776444431 68999999999999999999999999988776
No 90
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=38.93 E-value=54 Score=31.78 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=29.6
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016490 235 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 267 (388)
Q Consensus 235 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 267 (388)
.+.|-.+..++..+.+|+.|-.+|..+++.+..
T Consensus 74 ~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 74 VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 358999999999999999999999999988753
No 91
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=37.28 E-value=80 Score=29.29 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=30.9
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 235 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 235 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
.++|.++..+..++..|.+|...|.+.+.+ +..-|.-
T Consensus 26 ~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~-~~~rps~ 62 (165)
T cd01042 26 ARDPAVRPLIKEMLDEEKDHLAWFEELLPE-LGVRPSL 62 (165)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCch
Confidence 578999999999999999999999999966 3444543
No 92
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=37 Score=33.90 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHH--HHHHhHhhhhhhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhccCCCCCcCCCCCCcchhhhHHHHHHHhcCCC
Q 016490 238 MKL--AQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHLMYDGQDDKTFDHFSAVTQRLGVYT 315 (388)
Q Consensus 238 PvL--a~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i~MP~~~m~dg~~~~lf~~~s~va~r~GvYt 315 (388)
|.| +-++.+|..||..|-..|+.+.+.+.-..+.+.+....+--. +..- -.-+|.|
T Consensus 46 P~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~-k~n~-~~n~P~~-------------------- 103 (265)
T COG3396 46 PTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRH-KRNS-LFNLPTG-------------------- 103 (265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHH-HHHH-HHcCCCc--------------------
Q ss_pred hhhHHH--HHHHHHhhcccccccCCCH
Q 016490 316 GQDYAD--ILEFLIKRWGVEKLVGLTS 340 (388)
Q Consensus 316 ~~dy~d--Il~~ll~~W~v~~~~gL~~ 340 (388)
+|+| |.-+|++.|++..++.|.+
T Consensus 104 --~Wadt~~~~fLvD~~~~~~l~~l~~ 128 (265)
T COG3396 104 --DWADTIVRGFLVDGAAIYQLEALAD 128 (265)
T ss_pred --cHHHHHHHHHHHhHHHHHHHHHHHh
No 93
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=35.05 E-value=64 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHhh
Q 016490 322 ILEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENKA 364 (388)
Q Consensus 322 Il~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~ 364 (388)
++.|-..+|+... |||++- ++-|..|-.+++|++||.+
T Consensus 22 L~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~ 59 (75)
T PF06667_consen 22 LILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIE 59 (75)
T ss_pred HHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566678888654 898653 5678888999999999987
No 94
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=30.77 E-value=81 Score=26.34 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhh
Q 016490 251 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKK 283 (388)
Q Consensus 251 E~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~ 283 (388)
|.+|..+|.++... +.+.|+.+...|..|+++
T Consensus 9 e~~~~~~f~~~~~~-l~~~~~~~~~~f~~Va~~ 40 (100)
T smart00337 9 NKRYERAFSSFSAQ-LHVTPGTAIELFGEVATE 40 (100)
T ss_pred HHHHHHHHHHHHHH-hCCCcccHHHHHHHHHHH
Confidence 67899999998888 777888888888888874
No 95
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.87 E-value=67 Score=26.38 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.0
Q ss_pred HHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHhh
Q 016490 323 LEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENKA 364 (388)
Q Consensus 323 l~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~ 364 (388)
+-|-..+|+... |||++ -+..|..|-.+++|++||.+
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~ 59 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQ 59 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344456787775 89866 44578888999999999987
No 96
>PF13668 Ferritin_2: Ferritin-like domain
Probab=29.41 E-value=1.6e+02 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=26.7
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016490 235 HGDMKLAQICGTIASDEKRHETAYTKIVE 263 (388)
Q Consensus 235 ~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~ 263 (388)
..++...+++..|+.+|..|..++++.++
T Consensus 35 ~~~~~~~~~~~~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 35 ALDPEVRDLFQEIADQEQGHVDFLQAALE 63 (137)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999886
No 97
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=28.98 E-value=4e+02 Score=24.82 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=69.3
Q ss_pred hhHHHHHhhhhhhhhhhhHHHHhHHh-HhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHHH
Q 016490 152 TSWATWIRAWTAEENRHGDLLNKYLY-LSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTAR 230 (388)
Q Consensus 152 ~~w~~W~~~WtAEEnRHG~aLr~YL~-vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~ntar 230 (388)
...+.....=.-||-+|++-|-.=+. +-|--|...+.. ..++ .+.-..+-.---.|+.-.-.|++.-.
T Consensus 38 ~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~---------l~iG--~tv~E~L~~DL~~E~~a~~~lk~~i~ 106 (157)
T COG2193 38 TKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK---------LRIG--ETVKEMLEADLALEYEARDALKEAIA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc---------cccC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666789999997765544 666656655543 2222 13334555555678888888888777
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHH
Q 016490 231 LVKEHGDMKLAQICGTIASDEKRHETAYTKIV 262 (388)
Q Consensus 231 la~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv 262 (388)
.+...+|.|-+.++..|-+||.-|--+--..+
T Consensus 107 ~~e~~~Dyvsrdl~~~iL~deEEHid~LetqL 138 (157)
T COG2193 107 YCEEVQDYVSRDLLEEILADEEEHIDWLETQL 138 (157)
T ss_pred HHHhcccchHHHHHHHHHcchHHHHHHHHHHH
Confidence 77778899999999999999999877655544
No 98
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=27.02 E-value=3.9e+02 Score=24.92 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred hhhhhhhHHHHhHHhHhcCCChHHhHHHHHHHHhcCCCCCCCCCchhhHHHHHhhhhhhHHHHHHHH-------------
Q 016490 163 AEENRHGDLLNKYLYLSGRVDMKQIERSIQYLIRSGMDHKFENNPYNGFVYASFQERATFISHGNTA------------- 229 (388)
Q Consensus 163 AEEnRHG~aLr~YL~vsgrvDp~~lE~~~~~li~~G~~~~~~~~p~~~l~y~sfQE~AT~i~y~nta------------- 229 (388)
.-|.+|=+++..-+---|-.||.. +...+...+|-..=.|..+.+.|..+--.++.
T Consensus 36 ~SEq~Hmdav~~Ll~kY~l~dP~~-----------~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL 104 (162)
T PF09968_consen 36 RSEQRHMDAVKALLEKYGLEDPVE-----------GDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADL 104 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-S-----------S-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----------cCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHH
Confidence 368899888766554434445543 22333334555555566666655554222221
Q ss_pred -HHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 230 -RLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 230 -rla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
+....++++-+..+..++-.==..|..+|.+.++.
T Consensus 105 ~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~ 140 (162)
T PF09968_consen 105 EEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLER 140 (162)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344677888888877766556788888777654
No 99
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=26.76 E-value=1.3e+02 Score=29.04 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcc
Q 016490 251 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 285 (388)
Q Consensus 251 E~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~~~i 285 (388)
|.+|..+|.++.+. |.+.|+.+-..|..|+++-|
T Consensus 79 e~~~~~~f~~m~~q-L~it~~~a~~~F~~Va~elF 112 (213)
T TIGR00865 79 ERRYRRAFSDMTSQ-LHITPFTARQSFFQVAAELF 112 (213)
T ss_pred HHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHHHh
Confidence 78999999999998 88889999999999997533
No 100
>PRK13456 DNA protection protein DPS; Provisional
Probab=26.12 E-value=5.8e+02 Score=24.33 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=39.5
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHH
Q 016490 210 GFVYASFQERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIV 262 (388)
Q Consensus 210 ~l~y~sfQE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv 262 (388)
.|.-..--|..|..+|...+..++...-+.++..+..-+.||-.|+....+=+
T Consensus 24 lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI 76 (186)
T PRK13456 24 LLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRI 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446899999999988887644456667999999999999998776433
No 101
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=25.53 E-value=1.2e+02 Score=29.72 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.1
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016490 237 DMKLAQICGTIASDEKRHETAYTKIVEKLF 266 (388)
Q Consensus 237 dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 266 (388)
+....+-+.+...||.||..+|.++++++-
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667788899999999999999877
No 102
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=25.20 E-value=55 Score=32.31 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.8
Q ss_pred hHhhhhhhHHHHHHHHHHHH
Q 016490 245 GTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 245 ~~IAaDE~RH~~~Y~~iv~~ 264 (388)
-++|.||.||+..+.+-+++
T Consensus 105 ~~va~dEarHf~ll~~rL~~ 124 (253)
T PF04305_consen 105 LRVADDEARHFRLLRERLEE 124 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999877
No 103
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=25.14 E-value=7e+02 Score=24.97 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=17.1
Q ss_pred HHHHhhhhhhhhhhhHHHHhHHhH
Q 016490 155 ATWIRAWTAEENRHGDLLNKYLYL 178 (388)
Q Consensus 155 ~~W~~~WtAEEnRHG~aLr~YL~v 178 (388)
..+...|+..+ .+.++|+.+|++
T Consensus 85 ~~~~~~~~~~~-~~~~~l~~~LVL 107 (282)
T cd06102 85 RRLARAWGLDP-AAADLLRRALVL 107 (282)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHH
Confidence 34556777766 678999999976
No 104
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=24.23 E-value=1.6e+02 Score=30.30 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=32.9
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 234 EHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 234 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
....|-++..++..+..|+.|-.+|..+++.+. .+++.
T Consensus 124 ~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e 161 (369)
T PRK07209 124 HITNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGE 161 (369)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Confidence 456899999999999999999999999999983 45555
No 105
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=23.60 E-value=1.4e+02 Score=28.81 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHHhhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016490 217 QERATFISHGNTARLVKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 264 (388)
Q Consensus 217 QE~AT~i~y~ntarla~~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 264 (388)
.|.+|--.|-...=-.+.........++..|+.+|.+|+..-.|++.+
T Consensus 7 lE~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~a 54 (227)
T PF12902_consen 7 LELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNA 54 (227)
T ss_dssp HHHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766632221222224448899999999999999999999988
No 106
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.06 E-value=1.3e+02 Score=24.45 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHhcchHHHHHHHHHhh
Q 016490 322 ILEFLIKRWGVEKLVGLTSEGRKAQDFVCGLPSRIRRILENKA 364 (388)
Q Consensus 322 Il~~ll~~W~v~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~ 364 (388)
++-|-..+|+... |||++ -++.|..|..+++|++||.+
T Consensus 22 l~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~ 59 (75)
T TIGR02976 22 LILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERID 59 (75)
T ss_pred HHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566677888874 77776 34456778888999988886
No 107
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=22.28 E-value=3e+02 Score=26.07 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhhCCHHHHHHHhHhhhh----------------hh--HHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 016490 220 ATFISHGNTARLVKEHGDMKLAQICGTIASD----------------EK--RHETAYTKIVEKLFEIDPDDTILALAGMM 281 (388)
Q Consensus 220 AT~i~y~ntarla~~~gdPvLa~I~~~IAaD----------------E~--RH~~~Y~~iv~~~le~dpd~t~~Aia~vm 281 (388)
+-.-||..+.+ .+|+|+|..++..+..- +. .-.....+|++++-..|++.+..++...+
T Consensus 141 ~d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~~~~~H~ 217 (253)
T PRK10421 141 ADVRFHLAIAE---ASHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSQLTEQHQAVMDAILAGDAEGARKAMMAHL 217 (253)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678988555 57899998887765321 11 11345677788888888888777766665
Q ss_pred h
Q 016490 282 K 282 (388)
Q Consensus 282 ~ 282 (388)
.
T Consensus 218 ~ 218 (253)
T PRK10421 218 S 218 (253)
T ss_pred H
Confidence 4
No 108
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=21.86 E-value=2.4e+02 Score=28.18 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.8
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016490 234 EHGDMKLAQICGTIASDEKRHETAYTKIVEKL 265 (388)
Q Consensus 234 ~~gdPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 265 (388)
...+|-.+..++.++..|+.|...|..+++.+
T Consensus 84 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 84 DITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999975
No 109
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=21.06 E-value=2e+02 Score=23.36 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCchHHHHHHHHHh
Q 016490 251 EKRHETAYTKIVEKLFEIDPDDTILALAGMMK 282 (388)
Q Consensus 251 E~RH~~~Y~~iv~~~le~dpd~t~~Aia~vm~ 282 (388)
|.+|..+|.++++.+.-..|+.+...|..++.
T Consensus 9 e~~~~~~f~~~~~~l~~~~~~~~~~~f~~v~~ 40 (101)
T PF00452_consen 9 ERKYEDFFENMLNQLNINTPDNAYETFNEVAE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHCSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 56777777777777665566666777777776
No 110
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=20.55 E-value=2.4e+02 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHHhhhC-CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCch
Q 016490 218 ERATFISHGNTARLVKEHG-DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 272 (388)
Q Consensus 218 E~AT~i~y~ntarla~~~g-dPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dpd~ 272 (388)
|.+..-.|+.-.. ..+ +|.++..+...+..|..|...|.+.+.+. ..-|.-
T Consensus 14 E~~A~~iY~gQ~~---~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~-~~RpS~ 65 (172)
T PF03232_consen 14 EVGAVRIYRGQLA---VARRDPELRPFLKEMAEEEKDHLAWFEQLLPEL-RVRPSL 65 (172)
T ss_pred HHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHc-CCCCcH
Confidence 4444455665333 346 99999999999999999999999999875 333543
Done!