BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016495
         (388 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DA2|A Chain A, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
           With Inhibitor
 pdb|3DA2|B Chain B, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
           With Inhibitor
          Length = 262

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 206 KSKG-LTRMQFF--LIVLAASFAYYSLPGYLF--PILTFFSWVCWAWPHSITAQQIG 257
           K KG  TR   F  L +L  S+ Y++ PG L   P+L   +W+    P +I++QQ+ 
Sbjct: 170 KEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLA 226


>pdb|3CZV|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
           Complex With Acetazolamide
 pdb|3CZV|B Chain B, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
           Complex With Acetazolamide
 pdb|3D0N|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Xiii
 pdb|3D0N|B Chain B, Crystal Structure Of Human Carbonic Anhydrase Xiii
          Length = 264

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 206 KSKG-LTRMQFF--LIVLAASFAYYSLPGYLF--PILTFFSWVCWAWPHSITAQQIG 257
           K KG  TR   F  L +L  S+ Y++ PG L   P+L   +W+    P +I++QQ+ 
Sbjct: 171 KEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLA 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,373,904
Number of Sequences: 62578
Number of extensions: 461330
Number of successful extensions: 968
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 3
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)