Query 016495
Match_columns 388
No_of_seqs 152 out of 781
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-121 5E-126 945.2 24.2 368 16-388 45-414 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-117 4E-122 945.0 31.5 365 19-388 1-369 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 9.1E-75 2E-79 620.5 27.1 337 25-388 1-341 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 7.3E-69 1.6E-73 572.0 20.3 317 41-388 1-320 (624)
5 TIGR00733 putative oligopeptid 99.9 1.1E-21 2.3E-26 208.5 18.1 229 42-321 2-234 (591)
6 COG1297 Predicted membrane pro 99.5 1.3E-13 2.7E-18 143.8 13.3 234 38-319 11-248 (624)
7 PF03169 OPT: OPT oligopeptide 87.3 16 0.00034 39.8 14.9 171 42-229 354-548 (624)
8 PRK14749 hypothetical protein; 41.3 27 0.00058 23.2 2.2 18 46-63 5-22 (30)
9 TIGR02106 cyd_oper_ybgT cyd op 41.1 27 0.00058 23.3 2.2 18 46-63 5-22 (30)
10 PF08173 YbgT_YccB: Membrane b 41.0 27 0.00059 22.9 2.2 18 46-63 5-22 (28)
11 TIGR03141 cytochro_ccmD heme e 29.7 52 0.0011 23.5 2.4 25 363-387 6-31 (45)
12 TIGR02908 CoxD_Bacillus cytoch 28.4 2E+02 0.0044 24.8 6.2 50 39-89 20-69 (110)
13 PF04995 CcmD: Heme exporter p 28.2 62 0.0013 23.1 2.6 25 363-387 5-30 (46)
14 COG4890 Predicted outer membra 27.8 58 0.0013 22.4 2.2 18 46-63 5-22 (37)
15 PF01970 TctA: Tripartite tric 26.7 2.1E+02 0.0045 30.0 7.2 46 148-193 329-379 (419)
16 PF07203 DUF1412: Protein of u 24.4 33 0.00071 25.5 0.6 32 249-288 20-51 (53)
17 KOG0754 Mitochondrial oxodicar 23.2 44 0.00096 32.9 1.4 40 24-65 185-224 (294)
18 PF10176 DUF2370: Protein of u 20.4 67 0.0014 31.2 2.0 42 213-266 87-128 (233)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-121 Score=945.16 Aligned_cols=368 Identities=61% Similarity=1.145 Sum_probs=361.7
Q ss_pred CCCCCCCchhhHhhccCCCCCCCCCccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCC
Q 016495 16 DSTEERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPN 95 (388)
Q Consensus 16 ~~~~~~sPy~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~ 95 (388)
+++||||||||||++||++|||++|++|||+|++|++.|++++++||||++|+++++++.+++|+++||+||+|||+||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceee-cceeeeeCCCCCCCccchhhehhhcccccccCCchhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhh
Q 016495 96 KEFQV-LGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGM 174 (388)
Q Consensus 96 ~~~~~-~~~~f~lNPGPF~~KEh~li~ima~~a~~~~~~~~~a~~ii~~~~~fy~~~~~~g~~il~~lstqliG~g~AGl 174 (388)
|+++. ++|+|+|||||||+|||++|+|+||++ +|.+|++++|.+||+||+++++++++++++++||++|||+||+
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl 200 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGL 200 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhh
Confidence 99984 779999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCcCCchHHHHHHHHHhcccCCCCc-ccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccce
Q 016495 175 LRRYLVDPVEMWWPSNLAQVSLFRALHEKESKSK-GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITA 253 (388)
Q Consensus 175 lR~~lV~p~~mvwPs~L~t~~L~~sLH~~~~~~~-~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~ 253 (388)
+||++|+|++|+||++|++++|||+||+++++++ +++|+|||.++|++||+|||||+|+||.|+++||+||+.|+|+++
T Consensus 201 ~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~ 280 (761)
T KOG2262|consen 201 FRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITA 280 (761)
T ss_pred hHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHH
Confidence 9999999999999999999999999999988776 699999999999999999999999999999999999999999999
Q ss_pred eeecccccCcccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCcchhhhccCCc
Q 016495 254 QQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGH 333 (388)
Q Consensus 254 ~~lfGg~~GlGl~~~tfDW~~i~s~~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~n~w~~~~lP~~S~~lfd~~G~ 333 (388)
+||+||.+|||++|++|||++|++|.||||.+||++.+|+++|+++.++|+.|++|| +|.|++++|||+|+++||++|+
T Consensus 281 ~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~~a~~fPI~Ss~lf~~tG~ 359 (761)
T KOG2262|consen 281 NQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTYDAKYFPIFSSSLFDHTGN 359 (761)
T ss_pred HHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccceecceeceecCcceecCCc
Confidence 999999999999999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred eeecceecCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 016495 334 KYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGR 388 (388)
Q Consensus 334 ~Yn~s~il~~~~~ld~~~y~~y~p~~~s~~~~~~y~~~fa~~ta~i~h~~L~~~~ 388 (388)
+||++||+|+|++||.+|||+|||+|+|+.|+++||++||+++|+|+|++|||||
T Consensus 360 sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gk 414 (761)
T KOG2262|consen 360 SYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGK 414 (761)
T ss_pred EeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccH
Confidence 9999999999999999999999999999999999999999999999999999996
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2e-117 Score=945.03 Aligned_cols=365 Identities=38% Similarity=0.718 Sum_probs=356.3
Q ss_pred CCCCchhhHhhccCCCCCCCCCccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCCcce
Q 016495 19 EERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEF 98 (388)
Q Consensus 19 ~~~sPy~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~~~~ 98 (388)
||||||||||++||++|||++|++|||+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeeeCCCCCCCccchhhehhhcccccccCCchhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccce
Q 016495 99 QVLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRY 178 (388)
Q Consensus 99 ~~~~~~f~lNPGPF~~KEh~li~ima~~a~~~~~~~~~a~~ii~~~~~fy~~~~~~g~~il~~lstqliG~g~AGllR~~ 178 (388)
+++|++|+|||||||+|||++|||||+++ ++.+|+++++.+|++||+++++++++|++++++|++|||+||++||+
T Consensus 81 ~~~g~~~~lNPGPF~~KEh~liti~a~~~----~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~ 156 (681)
T TIGR00727 81 TIRGRKYNIIPGPFNVKEHMFITLMYAVS----FGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRF 156 (681)
T ss_pred ccccceeccCCCCCChhcceeeeeeeehh----ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 99999999999999999999999999998 68899999999999999999999999999999999999999999999
Q ss_pred eeccCCCcCCchHHHHHHHHHhcccCCCCc---ccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceee
Q 016495 179 LVDPVEMWWPSNLAQVSLFRALHEKESKSK---GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQ 255 (388)
Q Consensus 179 lV~p~~mvwPs~L~t~~L~~sLH~~~~~~~---~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~ 255 (388)
+|||++|+||++|++++|+|+||++++++. ++||+|+|+++|+++|+|+|+|+|+||+||+|||+|||+|||+++||
T Consensus 157 lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~ 236 (681)
T TIGR00727 157 VVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQ 236 (681)
T ss_pred EeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhh
Confidence 999999999999999999999998764432 47999999999999999999999999999999999999999999999
Q ss_pred ecccccCccccc-ccccccccccccCCcccccHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCcchhhhccCCce
Q 016495 256 IGSGYHGLGIGA-FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHK 334 (388)
Q Consensus 256 lfGg~~GlGl~~-~tfDW~~i~s~~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~n~w~~~~lP~~S~~lfd~~G~~ 334 (388)
+|||.+|||++| +|||||+|++++++||++|+|+++|+++|++++++++.|++|| +|.|+++||||+|+++|||+|++
T Consensus 237 i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~ 315 (681)
T TIGR00727 237 IFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHS 315 (681)
T ss_pred hhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccCCccchhhhcCCCc
Confidence 999999999999 8999999988889999999999999999999999999999999 89999999999999999999999
Q ss_pred eecceecCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 016495 335 YDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGR 388 (388)
Q Consensus 335 Yn~s~il~~~~~ld~~~y~~y~p~~~s~~~~~~y~~~fa~~ta~i~h~~L~~~~ 388 (388)
||+|||+|+|++||+||||||||||++++|+++||++||+++|+++|++|||||
T Consensus 316 Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~ 369 (681)
T TIGR00727 316 YNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGK 369 (681)
T ss_pred cccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999986
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=9.1e-75 Score=620.50 Aligned_cols=337 Identities=40% Similarity=0.684 Sum_probs=312.1
Q ss_pred hhHhhccCCCCCCCCCccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCCcceeeccee
Q 016495 25 EEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWR 104 (388)
Q Consensus 25 ~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~~~~~~~~~~ 104 (388)
||||+ ||++|||++|++|+|+|++|++++++++++||||++|+|+++.+++++|+++|++||+|+|++|+++ ++|
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~----~~~ 75 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE----GWK 75 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc----ccc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999987 688
Q ss_pred eeeCCCCCCCccchhhehhhcccccccCCchhHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--HHHHHhhhccceeecc
Q 016495 105 FSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQI--LGYGWAGMLRRYLVDP 182 (388)
Q Consensus 105 f~lNPGPF~~KEh~li~ima~~a~~~~~~~~~a~~ii~~~~~fy~~~~~~g~~il~~lstql--iG~g~AGllR~~lV~p 182 (388)
|+|||||||+|||+++|+||+++ ++.+++.+++.+|++||+++.++++++++++++|+ +|+++||++||++|+|
T Consensus 76 ~~lnpgpft~kE~~~iq~~asa~----~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~ 151 (654)
T TIGR00728 76 FSLNPGPFNVKENNLIQTAASAC----GGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVP 151 (654)
T ss_pred eecCCCCCChhhheeEEeeeecc----ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCc
Confidence 99999999999999999999999 67888999999999999999999999999999999 9999999999999999
Q ss_pred CCCcCCchHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceeeecccccC
Q 016495 183 VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHG 262 (388)
Q Consensus 183 ~~mvwPs~L~t~~L~~sLH~~~~~~~~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~lfGg~~G 262 (388)
++|+||+++++++|+|+||++.+..++.++-| +...+ |.++|+.+..++|+||+.|+++.++ +|| |
T Consensus 152 ~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r-~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 152 AKLPWPSGLATAELFKALHGKFHTANGDTIAK-NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccccCCcccHHHHHHHHhhhccCccCCCccch-hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 99999999999999999976543333222233 22111 7788888999999999999988885 454 8
Q ss_pred cccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCcchhhhccCCceeec-ceec
Q 016495 263 LGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDT-TKIL 341 (388)
Q Consensus 263 lGl~~~tfDW~~i~s~~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~n~w~~~~lP~~S~~lfd~~G~~Yn~-s~il 341 (388)
+|+++++|||+++.+++|+|+++|+++++|+++|.+++|++++|++|| +|+|+++++|++|++.||++|.+||. ++|+
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il 296 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPADADPIDSSSTIDSTGVRYNSVGLIV 296 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccCCCcchhhhcCCCceeeeeeEEE
Confidence 999999999999977889999999999999999999999999999999 79999999999999999999999999 9999
Q ss_pred CCC-CccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 016495 342 TPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGR 388 (388)
Q Consensus 342 ~~~-~~ld~~~y~~y~p~~~s~~~~~~y~~~fa~~ta~i~h~~L~~~~ 388 (388)
+++ .++|++||++|||+|++++| |+++||+++++++|++++|+|
T Consensus 297 ~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~ 341 (654)
T TIGR00728 297 VDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGR 341 (654)
T ss_pred eCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhH
Confidence 987 79999999999999999999 999999999999999999975
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=7.3e-69 Score=572.01 Aligned_cols=317 Identities=40% Similarity=0.713 Sum_probs=301.5
Q ss_pred ccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCCcceeecceeeeeCCCCCCCccchhh
Q 016495 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (388)
Q Consensus 41 ~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~~~~~~~~~~f~lNPGPF~~KEh~li 120 (388)
|+|+|++++|++++++++++||+|.+|++.+..+++++||++|++||+|+|. ++++.+||||||+|||+++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~---------~~~~~ln~gp~~~kE~~~v 71 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI---------GWRFSLNPGPFTIKENNLV 71 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh---------ccccccCCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 3456799999999999999
Q ss_pred ehhhcccccccCCchhHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccceeeccCCCcCCchHHHHHHHH
Q 016495 121 TIFANCGVSFGGGDAYSIGAITV--MKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLFR 198 (388)
Q Consensus 121 ~ima~~a~~~~~~~~~a~~ii~~--~~~fy~~~~~~g~~il~~lstqliG~g~AGllR~~lV~p~~mvwPs~L~t~~L~~ 198 (388)
|+||+++ ++.+++.+++++ ++.||++++++++++++++++|++|+++||++||++|+|++|+||++++++++++
T Consensus 72 q~~asa~----~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~ 147 (624)
T PF03169_consen 72 QTMASAA----GGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELIN 147 (624)
T ss_pred HHHHHHh----hhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHH
Confidence 9999998 678899999999 6679999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCcccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceeeecccccCcccccccccccccccc
Q 016495 199 ALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAY 278 (388)
Q Consensus 199 sLH~~~~~~~~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~lfGg~~GlGl~~~tfDW~~i~s~ 278 (388)
+||++++.+++++|+|+|.++|.++|+|+|+|+|+||+|+.++|+||++|+|+++++++|+.. ++||||++.
T Consensus 148 alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~-- 219 (624)
T PF03169_consen 148 ALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL-- 219 (624)
T ss_pred HhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--
Confidence 999987323257999999999999999999999999999999999999999999999998765 999999975
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHhhhhhhhcc-CCCCCCCCCCcchhhhccCCceeecceecCCCCccCHHHHHhcCC
Q 016495 279 HGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKF-DTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGK 357 (388)
Q Consensus 279 ~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~-n~w~~~~lP~~S~~lfd~~G~~Yn~s~il~~~~~ld~~~y~~y~p 357 (388)
+|+|+++|+++++|+++|.+++|+++.|++|| + |.|+++++|++|+++||++|+ +|+++|+++|++||+
T Consensus 220 ~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~-~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~ 289 (624)
T PF03169_consen 220 IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYY-SGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGP 289 (624)
T ss_pred cCCCeeccHHHHHHHHHHHHHHHHhcCCeeee-eccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHH
Confidence 79999999999999999999999999999999 6 999999999999999999997 889999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 016495 358 LYLSPLFALSIGSGFARFTSTLTHVALFHGR 388 (388)
Q Consensus 358 ~~~s~~~~~~y~~~fa~~ta~i~h~~L~~~~ 388 (388)
++.++.+.++|+..|+.++++++|.+++|+|
T Consensus 290 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 320 (624)
T PF03169_consen 290 MYGSGLFALSYGWSFAALTASIVHAILWHWK 320 (624)
T ss_pred HHHhHHHHHhhcccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=99.88 E-value=1.1e-21 Score=208.52 Aligned_cols=229 Identities=15% Similarity=0.104 Sum_probs=183.5
Q ss_pred cchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCCcceeecceeeeeCCCCCCCccchhhe
Q 016495 42 MTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVIIT 121 (388)
Q Consensus 42 ~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~~~~~~~~~~f~lNPGPF~~KEh~li~ 121 (388)
+|+|++++|++++++.++.|.|+++|.+...-.++.+.++++.+.|.+. ++|++||+++|
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~--------------------~~t~~EnnivQ 61 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR--------------------DRSILENNMVQ 61 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc--------------------cCChhHHHHHH
Confidence 7999999999999999999999999999999999999999999999663 26999999999
Q ss_pred hhhcccccccCCchhHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHHHhhhccceeeccCCCcCCchHHHHHHH
Q 016495 122 IFANCGVSFGGGDAYSIGAITVMKAYYK----QSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLF 197 (388)
Q Consensus 122 ima~~a~~~~~~~~~a~~ii~~~~~fy~----~~~~~g~~il~~lstqliG~g~AGllR~~lV~p~~mvwPs~L~t~~L~ 197 (388)
++|+++ ++ .+ .++...+.++- ++++++..++++++..++|..++.+|||.+|.++++.||++.+++.++
T Consensus 62 T~asA~----~~--~a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l 134 (591)
T TIGR00733 62 TAASAA----GT--LS-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVL 134 (591)
T ss_pred HHHHHH----HH--HH-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 999988 33 33 36667776443 467899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCcccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceeeecccccCccccccccccccccc
Q 016495 198 RALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISA 277 (388)
Q Consensus 198 ~sLH~~~~~~~~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~lfGg~~GlGl~~~tfDW~~i~s 277 (388)
++-.+. + +.+|.|.....+..+++|.++++ +.... ...-.|.. .|.+..-+++|||. +
T Consensus 135 ~~g~~g--~--~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~-------------~g~~~~~~~~~~Sp--a 192 (591)
T TIGR00733 135 KAGDKA--R--NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL-------------VGRRALYFGSDLSL--A 192 (591)
T ss_pred Hccccc--c--chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh-------------cCCcceEEEecccH--H
Confidence 974221 1 23678889999999999998843 11111 11111111 11122235689998 6
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCC
Q 016495 278 YHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFP 321 (388)
Q Consensus 278 ~~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~n~w~~~~lP 321 (388)
++|.++++++.+.+++++|.+++|+++.|.+.. +.|.....|
T Consensus 193 lvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~ 234 (591)
T TIGR00733 193 LIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTA--KMGSPGDLS 234 (591)
T ss_pred HHcCceeeChHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCcc
Confidence 899999999999999999999999999998876 345544433
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.51 E-value=1.3e-13 Score=143.80 Aligned_cols=234 Identities=20% Similarity=0.212 Sum_probs=177.0
Q ss_pred CCCccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHHHhhcCCcceeecceeeeeCCCCCCCccc
Q 016495 38 TMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEH 117 (388)
Q Consensus 38 ~~p~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~a~~lP~~~~~~~~~~f~lNPGPF~~KEh 117 (388)
.+|.+|+|++++|++++++....|.|+++|.+....+++-+.+++..+-|++. ++|+.||
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~--------------------~~silEN 70 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK--------------------GSSILEN 70 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC--------------------ccchhhh
Confidence 58999999999999999999999999999999999999999998876666442 5799999
Q ss_pred hhhehhhcccccccCCchhHHHHHHHHH----HHhcCCccHHHHHHHHHHHHHHHHHHhhhccceeeccCCCcCCchHHH
Q 016495 118 VIITIFANCGVSFGGGDAYSIGAITVMK----AYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQ 193 (388)
Q Consensus 118 ~li~ima~~a~~~~~~~~~a~~ii~~~~----~fy~~~~~~g~~il~~lstqliG~g~AGllR~~lV~p~~mvwPs~L~t 193 (388)
+++|++|+++ ++ .++.+|.+.+ .-|-++.+++.....+..-.++|..+.-+|||.+|.++++.||.+.++
T Consensus 71 NmVQT~ASAa----gt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAa 144 (624)
T COG1297 71 NMVQTQASAA----GT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAA 144 (624)
T ss_pred HHHHHHHhhh----cc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhH
Confidence 9999999988 33 3333443332 345588999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceeeecccccCccccccccccc
Q 016495 194 VSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWA 273 (388)
Q Consensus 194 ~~L~~sLH~~~~~~~~~sr~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~lfGg~~GlGl~~~tfDW~ 273 (388)
+.++++...+++.. +..|-..+......+|.++-+=+-=+-++.+ +|.. . |=+..-+..|.+
T Consensus 145 AEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~--~~~~----------~---~~~~~~lg~~~S 206 (624)
T COG1297 145 AEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLS--AAFS----------V---GRAAFALGLGLS 206 (624)
T ss_pred HHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHH--HHHH----------h---cchhhhhccccc
Confidence 99999997443321 4556666677777777777651100001111 1111 1 111222334445
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 016495 274 GISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARK 319 (388)
Q Consensus 274 ~i~s~~gspl~~P~~a~~n~~~G~vl~~~il~p~lyy~~n~w~~~~ 319 (388)
. +++|.+-++..-+.+-+++|.+++|.+..|++-+ +.|...+
T Consensus 207 ~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~ 248 (624)
T COG1297 207 L--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSD 248 (624)
T ss_pred H--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCc
Confidence 5 4678899999999999999999999999997765 5555443
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=87.25 E-value=16 Score=39.83 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=81.0
Q ss_pred cchhhhhHhHHHHHHHHHhhhhccc---cccc--chhhHHHHHHHHHhHHHHHHhhc--CCccee-----ecceeeeeCC
Q 016495 42 MTFRAWFLGLTSCTLLIFLNTFFTF---RTQP--LTISAILMQIAVLPIGKFMARIL--PNKEFQ-----VLGWRFSLNP 109 (388)
Q Consensus 42 ~TfRa~~lG~~l~~~~a~~n~~f~~---r~~~--i~i~~~~~qll~yplG~~~a~~l--P~~~~~-----~~~~~f~lNP 109 (388)
..-+.++.+++++.+.+.+-....+ +.|. ..+.-++.-+++.+.++..+..= |..... +.|. +-|
T Consensus 354 vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~---~~p 430 (624)
T PF03169_consen 354 VPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGL---LLP 430 (624)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHH---HHh
Confidence 5556777777777776666655555 3333 44555555566666666555430 111100 0111 223
Q ss_pred CCCCCccchhhehhhcc-cccccCCchhHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHHHHHhhhccceeecc-----
Q 016495 110 GPFNIKEHVIITIFANC-GVSFGGGDAYSIGAITVMKA-YYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDP----- 182 (388)
Q Consensus 110 GPF~~KEh~li~ima~~-a~~~~~~~~~a~~ii~~~~~-fy~~~~~~g~~il~~lstqliG~g~AGllR~~lV~p----- 182 (388)
|+ .+..+++.. + . ...+-+.+...-+|. +| .+.++-.+...-+...++|...+...-+.+-.+
T Consensus 431 g~------~~a~l~~~~~~--~-~~~~qa~~~~~DlK~G~~-l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~ 500 (624)
T PF03169_consen 431 GN------PIANLLFGGYG--Y-AAASQAGDLMQDLKTGHY-LGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGP 500 (624)
T ss_pred cc------HHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33 111111111 1 0 112334445444454 33 234444444433444444444444333333222
Q ss_pred -----CCCcCCchHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHhh
Q 016495 183 -----VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSL 229 (388)
Q Consensus 183 -----~~mvwPs~L~t~~L~~sLH~~~~~~~~~sr~rfF~~~f~~~f~~~~~ 229 (388)
..+.=|+.....++.+.+-.+.+ ..+++.+.++++..++-..+
T Consensus 501 ~~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~ 548 (624)
T PF03169_consen 501 DQGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPIL 548 (624)
T ss_pred cccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHH
Confidence 33344566777777777766533 26777777777666654443
No 8
>PRK14749 hypothetical protein; Provisional
Probab=41.26 E-value=27 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.9
Q ss_pred hhhHhHHHHHHHHHhhhh
Q 016495 46 AWFLGLTSCTLLIFLNTF 63 (388)
Q Consensus 46 a~~lG~~l~~~~a~~n~~ 63 (388)
+|++|+.+++..+.+|-.
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998854
No 9
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=41.11 E-value=27 Score=23.27 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.8
Q ss_pred hhhHhHHHHHHHHHhhhh
Q 016495 46 AWFLGLTSCTLLIFLNTF 63 (388)
Q Consensus 46 a~~lG~~l~~~~a~~n~~ 63 (388)
+|++|+.+.+..+++|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 10
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=41.03 E-value=27 Score=22.87 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.7
Q ss_pred hhhHhHHHHHHHHHhhhh
Q 016495 46 AWFLGLTSCTLLIFLNTF 63 (388)
Q Consensus 46 a~~lG~~l~~~~a~~n~~ 63 (388)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 11
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=29.65 E-value=52 Score=23.48 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=20.7
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhhcC
Q 016495 363 LFAL-SIGSGFARFTSTLTHVALFHG 387 (388)
Q Consensus 363 ~~~~-~y~~~fa~~ta~i~h~~L~~~ 387 (388)
.|++ +|++++.++...+.+...-++
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~~~r 31 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLLDRR 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 899999999999999887654
No 12
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=28.36 E-value=2e+02 Score=24.76 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCccchhhhhHhHHHHHHHHHhhhhcccccccchhhHHHHHHHHHhHHHHH
Q 016495 39 MPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFM 89 (388)
Q Consensus 39 ~p~~TfRa~~lG~~l~~~~a~~n~~f~~r~~~i~i~~~~~qll~yplG~~~ 89 (388)
....+.|+.++|.+++++.+++.=...+. +..+-......++...+-+..
T Consensus 20 ~~~~~~k~yviGFiLSiiLT~I~F~~V~~-~~l~~~~~~~~I~~lAvvQi~ 69 (110)
T TIGR02908 20 KNAEEMKKQIVTFALMIFLTLIAFFAVML-DEIDKWFVIPFILLLAAVQVA 69 (110)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHh-ccCChhHHHHHHHHHHHHHHH
Confidence 44578999999999999998887655543 233333444444444444433
No 13
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.21 E-value=62 Score=23.14 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhhcC
Q 016495 363 LFAL-SIGSGFARFTSTLTHVALFHG 387 (388)
Q Consensus 363 ~~~~-~y~~~fa~~ta~i~h~~L~~~ 387 (388)
.|++ +|++++.++...+++...-++
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~~~r 30 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLRRRR 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 899999999999999876543
No 14
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=27.77 E-value=58 Score=22.39 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.4
Q ss_pred hhhHhHHHHHHHHHhhhh
Q 016495 46 AWFLGLTSCTLLIFLNTF 63 (388)
Q Consensus 46 a~~lG~~l~~~~a~~n~~ 63 (388)
+|++|+.++|-.+.+|-.
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999988888754
No 15
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=26.74 E-value=2.1e+02 Score=30.03 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=25.8
Q ss_pred hcCCccHHHHHHHHHHH-----HHHHHHHhhhccceeeccCCCcCCchHHH
Q 016495 148 YKQSLNFLCGLLIVLTT-----QILGYGWAGMLRRYLVDPVEMWWPSNLAQ 193 (388)
Q Consensus 148 y~~~~~~g~~il~~lst-----qliG~g~AGllR~~lV~p~~mvwPs~L~t 193 (388)
+.++.+..+.+...+.. -++|+..+-.+.|+.=.|.+.+.|..+..
T Consensus 329 f~~~~~~~~~~~~~~~ia~i~~~~i~~~~~~~~~~i~~ip~~~L~~~il~~ 379 (419)
T PF01970_consen 329 FTDNPDIVYTLFASMLIANILMLLIGLFLARYFAKILKIPYRILSPIILVL 379 (419)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344455555554322 24566666666666666777777765553
No 16
>PF07203 DUF1412: Protein of unknown function (DUF1412); InterPro: IPR009853 This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.
Probab=24.43 E-value=33 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=22.1
Q ss_pred CccceeeecccccCcccccccccccccccccCCcccccHH
Q 016495 249 HSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWT 288 (388)
Q Consensus 249 ~n~~~~~lfGg~~GlGl~~~tfDW~~i~s~~gspl~~P~~ 288 (388)
+|.+-..+.|| |-++.|.|+-- +-|||+.|.+
T Consensus 20 nn~VsD~~~Gg-------ptslGWaQVph-~~SPmfsPVf 51 (53)
T PF07203_consen 20 NNMVSDNLWGG-------PTSLGWAQVPH-VYSPMFSPVF 51 (53)
T ss_pred ecccccccccC-------ccccchhhCcc-ccCccccccc
Confidence 34455556666 56777999963 5799999853
No 17
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion]
Probab=23.25 E-value=44 Score=32.91 Aligned_cols=40 Identities=33% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhhHhhccCCCCCCCCCccchhhhhHhHHHHHHHHHhhhhcc
Q 016495 24 IEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFT 65 (388)
Q Consensus 24 y~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~a~~n~~f~ 65 (388)
|-.||.++|...|++. ++.|-+.+|.+-+.+++++|.=|.
T Consensus 185 y~~vrn~vP~~k~~~~--~~~~~~i~g~l~gtla~~ln~pfD 224 (294)
T KOG0754|consen 185 YYQVRNSVPSAKDKTL--EIRRKLIIGALAGTLACVLNTPFD 224 (294)
T ss_pred HHHHHhhCCCccCcHH--HHHHHHHHHHhhhhhhhhccChhH
Confidence 4568999999888875 899999999999999988887654
No 18
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=20.37 E-value=67 Score=31.18 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhchhhhhhccCCccceeeecccccCcccc
Q 016495 213 MQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIG 266 (388)
Q Consensus 213 ~rfF~~~f~~~f~~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~lfGg~~GlGl~ 266 (388)
.--|++.|+.+|+++|+ +++... +..++..- =.|...||||.
T Consensus 87 ~~~F~~n~~vs~~Fq~i-GFllty---------~l~tthAa--r~Gs~aGlGlt 128 (233)
T PF10176_consen 87 DFSFVWNFLVSFSFQWI-GFLLTY---------CLHTTHAA--RYGSRAGLGLT 128 (233)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH---------HHhcchHh--hccchhhchHH
Confidence 34577888888888887 666433 22222222 26778888875
Done!