Query 016495
Match_columns 388
No_of_seqs 152 out of 781
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 19.9 1.2E+02 0.004 21.9 3.8 40 280-321 2-42 (54)
2 2knc_A Integrin alpha-IIB; tra 11.6 2.3E+02 0.008 20.3 3.6 38 284-323 9-47 (54)
3 2v2f_A Penicillin binding prot 10.7 61 0.0021 19.1 0.2 13 322-334 4-16 (26)
4 2jsh_A Appetite-regulating hor 7.2 65 0.0022 19.9 -0.7 13 346-358 10-22 (26)
5 2fnf_X Putative RAS effector N 7.1 1.3E+02 0.0044 22.4 0.7 18 25-42 2-19 (72)
6 2k1a_A Integrin alpha-IIB; sin 6.5 6.4E+02 0.022 17.0 4.5 31 284-316 7-38 (42)
7 3pm2_A Odorant binding protein 6.1 1E+02 0.0036 26.5 -0.3 23 334-357 60-82 (173)
8 3q8i_A Odorant binding protein 4.6 3E+02 0.01 21.5 1.6 18 338-355 55-72 (124)
9 1lgh_A LH II, B800/850, light 4.6 7.9E+02 0.027 17.6 3.6 22 363-384 16-37 (56)
10 2xpp_A IWS1, ECU08_0440; trans 4.3 4.1E+02 0.014 22.6 2.3 34 21-54 60-93 (145)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=19.89 E-value=1.2e+02 Score=21.91 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCcccccHHHHH-HHHHHHHHHHHHhhhhhhhccCCCCCCCCC
Q 016495 280 GSPLVTPWTSIL-NVGIGFVMFIYIIVPLCYWKFDTFDARKFP 321 (388)
Q Consensus 280 gspl~~P~~a~~-n~~~G~vl~~~il~p~lyy~~n~w~~~~lP 321 (388)
|.|--+|+|.++ +..+|.++ ..++.-++|. -|.+.-++-+
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK-~GFFKR~~~~ 42 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWK-IGFFKRPLKK 42 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHH-HHHTTSCCSC
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHH-cCcccCCCcc
Confidence 445567888755 55556555 4444446776 6766655533
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.62 E-value=2.3e+02 Score=20.26 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=23.1
Q ss_pred cccHHHHH-HHHHHHHHHHHHhhhhhhhccCCCCCCCCCCc
Q 016495 284 VTPWTSIL-NVGIGFVMFIYIIVPLCYWKFDTFDARKFPIF 323 (388)
Q Consensus 284 ~~P~~a~~-n~~~G~vl~~~il~p~lyy~~n~w~~~~lP~~ 323 (388)
-+|+|..+ +..+|.++ ..++.-++|. -|.+.-++-|..
T Consensus 9 ~vp~wiIi~svl~GLll-L~li~~~LwK-~GFFkR~~~~~~ 47 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL-LTILVLAMWK-VGFFKRNRPPLE 47 (54)
T ss_dssp TCCHHHHHHHHHHHHHH-HHHHHHHHHH-HHHTTTTCCSCC
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHH-cCcccCCCCCcc
Confidence 47888754 55566555 4444446776 677766665543
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=10.68 E-value=61 Score=19.14 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=9.3
Q ss_pred CcchhhhccCCce
Q 016495 322 IFSNQLFTSSGHK 334 (388)
Q Consensus 322 ~~S~~lfd~~G~~ 334 (388)
-.++.+||++|+.
T Consensus 4 ~~ss~IYD~~g~~ 16 (26)
T 2v2f_A 4 TTSSKIYDNKNQL 16 (26)
T ss_pred CCCCEEEeCCCCE
Confidence 3467788888864
No 4
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=7.23 E-value=65 Score=19.90 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.7
Q ss_pred ccCHHHHHhcCCC
Q 016495 346 DLNIPAYNSYGKL 358 (388)
Q Consensus 346 ~ld~~~y~~y~p~ 358 (388)
++-++-|++||+.
T Consensus 10 ~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 10 KLSGAQYQQHGRA 22 (26)
T ss_dssp GGHHHHCSCSSSC
T ss_pred EecHHHHHHHhHH
Confidence 5778889999986
No 5
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=7.07 E-value=1.3e+02 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=4.0
Q ss_pred hhHhhccCCCCCCCCCcc
Q 016495 25 EEVALIVPETDDPTMPVM 42 (388)
Q Consensus 25 ~eVra~v~~~DDp~~p~~ 42 (388)
+|||.+....+||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 578998888888887643
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.51 E-value=6.4e+02 Score=16.96 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=17.9
Q ss_pred cccHHHHH-HHHHHHHHHHHHhhhhhhhccCCCC
Q 016495 284 VTPWTSIL-NVGIGFVMFIYIIVPLCYWKFDTFD 316 (388)
Q Consensus 284 ~~P~~a~~-n~~~G~vl~~~il~p~lyy~~n~w~ 316 (388)
-+|+|..+ +..+|.++ ..++.-++|. -+.+.
T Consensus 7 ~vp~wiIi~s~l~GLll-L~li~~~LwK-~GFFk 38 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLL-LTILVLAMWK-VGFFK 38 (42)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHHHHHHH-TTTTC
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHH-cCccc
Confidence 36877654 55566655 3444446665 66554
No 7
>3pm2_A Odorant binding protein (AGAP007287-PA); alpha helical protein, odorant MOLE antennae, transport protein; 1.80A {Anopheles gambiae}
Probab=6.11 E-value=1e+02 Score=26.55 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=18.0
Q ss_pred eeecceecCCCCccCHHHHHhcCC
Q 016495 334 KYDTTKILTPQYDLNIPAYNSYGK 357 (388)
Q Consensus 334 ~Yn~s~il~~~~~ld~~~y~~y~p 357 (388)
.|+-+.+++ ||+||.++.+++-.
T Consensus 60 i~~~~g~l~-~g~ld~~~~~~~l~ 82 (173)
T 3pm2_A 60 VMNSTSLYS-NGKIDREALTKLYL 82 (173)
T ss_dssp HHHHTTCEE-TTEECHHHHHHHHH
T ss_pred hHHHhCCcc-CCcccHHHHHHHHH
Confidence 567777888 78999999887543
No 8
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=4.63 E-value=3e+02 Score=21.52 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=15.1
Q ss_pred ceecCCCCccCHHHHHhc
Q 016495 338 TKILTPQYDLNIPAYNSY 355 (388)
Q Consensus 338 s~il~~~~~ld~~~y~~y 355 (388)
..++|+||.+|.+++.++
T Consensus 55 ~g~~d~~G~~~~d~~~~~ 72 (124)
T 3q8i_A 55 AGTMTKKGEISFSKTMAQ 72 (124)
T ss_dssp TTCBCTTSCBCHHHHHHH
T ss_pred cCccCcCCcCCHHHHHHH
Confidence 458889999999999884
No 9
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=4.62 E-value=7.9e+02 Score=17.63 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 016495 363 LFALSIGSGFARFTSTLTHVAL 384 (388)
Q Consensus 363 ~~~~~y~~~fa~~ta~i~h~~L 384 (388)
.-.+--...|.++.|.++|.+|
T Consensus 16 ~~~L~~l~~~v~vlAllIH~~l 37 (56)
T 1lgh_A 16 STWLPVIWIVATVVAIAVHAAV 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHH
Confidence 4455566778889999999886
No 10
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=4.33 E-value=4.1e+02 Score=22.58 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCchhhHhhccCCCCCCCCCccchhhhhHhHHHH
Q 016495 21 RCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSC 54 (388)
Q Consensus 21 ~sPy~eVra~v~~~DDp~~p~~TfRa~~lG~~l~ 54 (388)
+.-+..++.=+.+-.|.++|..++|.-++.++..
T Consensus 60 ~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~ 93 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKT 93 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHH
Confidence 4555677777888899999999999988877653
Done!