BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016501
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/385 (49%), Positives = 244/385 (63%), Gaps = 3/385 (0%)
Query: 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLD 60
MGIPVGKLALYTA GG+ P CLP+ +DVGT NE+LLKD YIGLRQRR G EY + LD
Sbjct: 178 MGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLD 237
Query: 61 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXX 120
EFM AV YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 238 EFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALR 297
Query: 121 XXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180
L++ LF GAGEA GIA LI + + K+ P E+ KKI LVDSKGLIV R
Sbjct: 298 ITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEG-LPKEKAIKKIWLVDSKGLIVKGRA 356
Query: 181 DSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240
SL K+ +AHEHE + NL V+ IKPT LIG + +G F++++++ MA+FNE+P+I
Sbjct: 357 -SLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIF 415
Query: 241 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLG 299
ALSNPTS++EC+AE+ Y +KGRAIFASGSPFDP NG+ PGQ NN+Y+FPG LG
Sbjct: 416 ALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALG 475
Query: 300 LVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYEL 359
+V G ++ D++ L +E +A+QV++++ E+G +YPP + IR Y+
Sbjct: 476 VVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQE 535
Query: 360 GVATRLPRPQNLVKCAESCMYTPVY 384
AT P PQN S MY+ Y
Sbjct: 536 KTATVYPEPQNKEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 183/387 (47%), Positives = 240/387 (62%), Gaps = 3/387 (0%)
Query: 2 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 61
GIPVGKLALYTA GG++P CLP+ +DVGT+NE LLKD YIGLR +R GQ Y +LLDE
Sbjct: 156 GIPVGKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDE 215
Query: 62 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXX 121
F AV YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 216 FXEAVTSRYGXNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRI 275
Query: 122 XXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 181
L++H LF GAGEA GIA LI K+ + EE K+I VDSKGLIV R
Sbjct: 276 TKNRLSDHTVLFQGAGEAALGIANLIVXAXQKEGVSK-EEAIKRIWXVDSKGLIVKGRA- 333
Query: 182 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
SL K+ +AHEH NL D VK IKPT+LIG + +G FT+++++ A+FN++P+I A
Sbjct: 334 SLTPEKEHFAHEHCEXKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFA 393
Query: 242 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGL 300
LSNPTS++ECTAE+ Y +++GR IFASGSPFDP +G+ PGQ NN+Y+FPG LG+
Sbjct: 394 LSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGV 453
Query: 301 VISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELG 360
+ G + DD+ L +E +A++V+EEN ++G +YPP I+ Y
Sbjct: 454 ISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNN 513
Query: 361 VATRLPRPQNLVKCAESCMYTPVYRNY 387
A+ P+P++L S +Y+ Y +
Sbjct: 514 TASTYPQPEDLEAFIRSQVYSTDYNCF 540
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 350 bits (899), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 175/377 (46%), Positives = 234/377 (62%), Gaps = 6/377 (1%)
Query: 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLD 60
MGIPVGKL LYTA GIRP CLP+ +DVGT+N LLKD FY+GL Q+R Q+Y +L+D
Sbjct: 158 MGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 217
Query: 61 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXX 120
EFM A+ YG LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 218 EFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQK 277
Query: 121 XXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180
++EH+ LFLGAGEA GIA LI + + + + +E +KKI + D GL+V RK
Sbjct: 278 VISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSE-QEAQKKIWMFDKYGLLVKGRK 336
Query: 181 DSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 237
+ +++P+ H E P + DAV ++KP+ +IG +G GR FT +VI AMAS NE+P
Sbjct: 337 AKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERP 395
Query: 238 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGF 296
+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG
Sbjct: 396 VIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGV 455
Query: 297 GLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXX 356
L +++ + D + L A++AL Q+T+E +G +YPP +NI+
Sbjct: 456 ALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYL 515
Query: 357 YELGVATRLPRPQNLVK 373
Y +A P P++ K
Sbjct: 516 YANKMAFVYPEPEDKAK 532
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 340 bits (873), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 227/376 (60%), Gaps = 6/376 (1%)
Query: 2 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 61
GIPVGKL LYTA GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DE
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
Query: 62 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXX 121
F A+ YG LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 238 FXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKV 297
Query: 122 XXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 181
++EH+ LFLGAGEA GIA LI + + +E +KKI D GL+V RK
Sbjct: 298 ISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKA 356
Query: 182 SLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 238
+ +++P+ H E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+
Sbjct: 357 KIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPV 415
Query: 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFG 297
I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG
Sbjct: 416 IFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVA 475
Query: 298 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXY 357
L +++ + D + L A++AL Q+T+E +G +YPP +NI+ Y
Sbjct: 476 LAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLY 535
Query: 358 ELGVATRLPRPQNLVK 373
A R P P++ K
Sbjct: 536 ANKXAFRYPEPEDKAK 551
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 227/376 (60%), Gaps = 6/376 (1%)
Query: 2 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 61
GIPVGKL LYTA GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DE
Sbjct: 158 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 217
Query: 62 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXX 121
F A+ YG LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 218 FXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKV 277
Query: 122 XXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 181
++EH+ LFLGAGEA GIA LI + + +E +KKI D GL+V RK
Sbjct: 278 ISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKA 336
Query: 182 SLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 238
+ +++P+ H E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+
Sbjct: 337 KIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPV 395
Query: 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFG 297
I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG
Sbjct: 396 IFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVA 455
Query: 298 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXY 357
L +++ + D + L A++AL Q+T+E +G +YPP +NI+ Y
Sbjct: 456 LAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLY 515
Query: 358 ELGVATRLPRPQNLVK 373
A R P P++ K
Sbjct: 516 ANKXAFRYPEPEDKAK 531
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 227/376 (60%), Gaps = 6/376 (1%)
Query: 2 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 61
GIPVGKL LYTA GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DE
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
Query: 62 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXX 121
F A+ YG LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 238 FXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKV 297
Query: 122 XXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 181
++EH+ LFLGAGEA GIA LI + + +E +KKI D GL+V RK
Sbjct: 298 ISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKA 356
Query: 182 SLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 238
+ +++P+ H E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+
Sbjct: 357 KIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPV 415
Query: 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFG 297
I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG
Sbjct: 416 IFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVA 475
Query: 298 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXY 357
L +++ + D + L A++AL Q+T+E +G +YPP +NI+ Y
Sbjct: 476 LAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLY 535
Query: 358 ELGVATRLPRPQNLVK 373
A R P P++ K
Sbjct: 536 ANKXAFRYPEPEDKAK 551
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 227/376 (60%), Gaps = 6/376 (1%)
Query: 2 GIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDE 61
GIPVGKL LYTA GIRP CLP+ +DVGT+N LLKD FY GL Q+R Q+Y +L+DE
Sbjct: 156 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 215
Query: 62 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXX 121
F A+ YG LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 216 FXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKV 275
Query: 122 XXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 181
++EH+ LFLGAGEA GIA LI + + +E +KKI D GL+V RK
Sbjct: 276 ISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKA 334
Query: 182 SLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 238
+ +++P+ H E P + DAV ++KP+ +IG +G GR FT +VI A AS NE+P+
Sbjct: 335 KIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPV 393
Query: 239 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFG 297
I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+VF PGQ NN YIFPG
Sbjct: 394 IFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVA 453
Query: 298 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXY 357
L +++ + D + L A++AL Q+T+E +G +YPP +NI+ Y
Sbjct: 454 LAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLY 513
Query: 358 ELGVATRLPRPQNLVK 373
A R P P++ K
Sbjct: 514 ANKXAFRYPEPEDKAK 529
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/385 (44%), Positives = 237/385 (61%), Gaps = 4/385 (1%)
Query: 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLD 60
+GIPVGKLALY ALGG++P CLP+ +DVGTNN LL D FYIGLR +R G++Y LLD
Sbjct: 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLD 252
Query: 61 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXX 120
FM A + YG+K LIQFEDFAN NAF LL KY + +FNDDIQ
Sbjct: 253 NFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTR 312
Query: 121 XXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 180
+++ ++LF GAG A TGIAE+I ++ + + EE +I L+D GL+ +RK
Sbjct: 313 VTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISK-EEACNRIYLMDIDGLVTKNRK 371
Query: 181 D-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 239
+ + +H + +A + ++L+ ++ +P LIG+S V F +EVI AMA NE+P+I
Sbjct: 372 EMNPRHVQ--FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPII 429
Query: 240 LALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLG 299
ALSNPTS++ECTAEEAYT++ G A++ASGSPF FE NG + PGQ NNAYIFPG LG
Sbjct: 430 FALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALG 489
Query: 300 LVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYEL 359
++ V +D+ L A++ +A VTE++ + G +YP IR Y+
Sbjct: 490 TILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKN 549
Query: 360 GVATRLPRPQNLVKCAESCMYTPVY 384
G A P+P++L K + +Y Y
Sbjct: 550 GTANLYPQPEDLEKYVRAQVYNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 127/331 (38%), Gaps = 61/331 (18%)
Query: 1 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLD 60
+G+ GK L LGGI +PI +D + G+ + +
Sbjct: 114 LGVMEGKALLMKYLGGID---AVPICID------------------SKNKEGKNDPDAVI 152
Query: 61 EFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTHLVFNDDIQXXXXXXXXXXXXX 118
EF+ ++ +G I ED + N +++L + V++DD Q
Sbjct: 153 EFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNA 209
Query: 119 XXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 178
+ E R +F+GAG + T LI + KKI + DSKG + +
Sbjct: 210 LKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP---------KKIVMFDSKGSLHNG 260
Query: 179 RKDSLQ--HFKKPW--AHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 234
R+D + F + W P A + +LI S G K E + S
Sbjct: 261 REDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKA--EWIKSMG 318
Query: 235 EKPLILALSNPTSQ---SECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAY 291
EKP++ +NP + E AY + GR F P Q NN+
Sbjct: 319 EKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF-----------------PNQVNNSV 361
Query: 292 IFPGFGLGLVISGAIRVHDDMLLAASEALAK 322
FPG G +I A ++ D+M +AAS ALA+
Sbjct: 362 GFPGILKGALIVRARKITDNMAIAASRALAE 392
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 116/339 (34%), Gaps = 72/339 (21%)
Query: 6 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSA 65
GK AL+ A G+ +PI +D E + + A
Sbjct: 94 GKAALFKAFAGVD---AIPIVLDTKDTEEII------------------------SIVKA 126
Query: 66 VKQNYGEKVLIQFEDFANHNAFELLAKY-GTTHL-VFNDDIQXXXXXXXXXXXXXXXXXX 123
+ +G I ED + FE+ + H+ VF+DD
Sbjct: 127 LAPTFGG---INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLK 183
Query: 124 XTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 183
+L E + G G AG I T+ + K+ +VD G+I L
Sbjct: 184 KSLDEVSIVVNGGGSAGLSI-----------TRKLLAAGATKVTVVDKFGIINEQEAAQL 232
Query: 184 --QHFKKPWAHEHE-PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 240
H E L DA++ I IG S G E I MA+ +P+I
Sbjct: 233 APHHLDIAKVTNREFKSGTLEDALE--GADIFIGVSAPG-VLKAEWISKMAA---RPVIF 286
Query: 241 ALSNPTSQ---SECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 297
A++NP + E AY GR+ F P Q NN FPG
Sbjct: 287 AMANPIPEIYPDEALEAGAYIVGTGRSDF-----------------PNQINNVLAFPGIF 329
Query: 298 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYP 336
G + + A + +M +AA++ +A V ++ I P
Sbjct: 330 RGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIP 368
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 93/256 (36%), Gaps = 34/256 (13%)
Query: 76 IQFEDFANHNAFELLAKYGTTH--LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLF 133
I ED F +L + VF+DD Q + E + +
Sbjct: 128 INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVV 187
Query: 134 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAH 192
G G AG I + + ++ K + VD KG++ + ++ L + A
Sbjct: 188 NGIGAAGYNIVKFL-----------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR 236
Query: 193 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT 252
P D ++ G E I+ M+ KP+I AL+NP + +
Sbjct: 237 ITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMS---RKPVIFALANPVPEIDPE 293
Query: 253 -AEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDD 311
A EA G I A+G P Q NN FPG G V + ++ +
Sbjct: 294 LAREA-----GAFIVATGRSDHP----------NQVNNLLAFPGIMKGAVEKRS-KITKN 337
Query: 312 MLLAASEALAKQVTEE 327
MLL+A EA+A+ E
Sbjct: 338 MLLSAVEAIARSCEPE 353
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 136/342 (39%), Gaps = 52/342 (15%)
Query: 13 ALGGIRPSACLPITVDVGTNNEQLLK-----DEFYIGLRQRRATGQEYAELLDEFMSAVK 67
LG I P A LP+ L K D F I +++ QE + +D + A+
Sbjct: 77 GLGNIGPLAGLPVM----EGKALLFKRFGGVDAFPIMIKE-----QEPNKFID-IVKAIA 126
Query: 68 QNYGEKVLIQFEDFANHNAFELLAKYGTTH--LVFNDDIQXXXXXXXXXXXXXXXXXXXT 125
+G I ED A+ F +L + VF+DD Q
Sbjct: 127 PTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKK 183
Query: 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE-ETRKKICLVDSKGLIVSSRKDSLQ 184
++E GAG AG ++ T+A V+ E + + LV+ K I++S D +
Sbjct: 184 ISEITLALFGAGAAGFATLRIL-------TEAGVKPENVRVVELVNGKPRILTSDLDLEK 236
Query: 185 HFK-KPWAHEHEPVNNL----LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 239
F + W + N+ +A+K I G G + IE M NE ++
Sbjct: 237 LFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPG-VIKPQWIEKM---NEDAIV 292
Query: 240 LALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLG 299
L+NP E EEA G I A+G + P Q NN FPG G
Sbjct: 293 FPLANPVP--EILPEEAK--KAGARIVATG----------RSDYPNQINNLLGFPGIFRG 338
Query: 300 LVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 341
+ A + D M++AA++A+A V EE E+ +I P + I
Sbjct: 339 ALDVRARTITDSMIIAAAKAIASIV-EEPSEENIIPSPLNPI 379
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 128/346 (36%), Gaps = 60/346 (17%)
Query: 13 ALGGIRPSACLPITVDVGTNNEQLLK-----DEFYIGLRQRRATGQEYAELLDEFMSAVK 67
LG I P A LP V L K D F I +++ QE + +D + A+
Sbjct: 77 GLGNIGPLAGLP----VXEGKALLFKRFGGVDAFPIXIKE-----QEPNKFID-IVKAIA 126
Query: 68 QNYGEKVLIQFEDFANHNAFELLAKYGTTH--LVFNDDIQXXXXXXXXXXXXXXXXXXXT 125
+G I ED A+ F +L + VF+DD Q
Sbjct: 127 PTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKK 183
Query: 126 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE-ETRKKICLVDSKGLIVSSRKDSLQ 184
++E GAG AG ++ T+A V+ E + + LV+ K I++S D +
Sbjct: 184 ISEITLALFGAGAAGFATLRIL-------TEAGVKPENVRVVELVNGKPRILTSDLDLEK 236
Query: 185 HFK-KPWAH--------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 235
F + W E P L DA +LI + G K + + NE
Sbjct: 237 LFPYRGWLLKKTNGENIEGGPQEALKDA------DVLISFTRPGPGVIKP--QWIEKXNE 288
Query: 236 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPG 295
++ L+NP E EEA G I A+G + P Q NN FPG
Sbjct: 289 DAIVFPLANPVP--EILPEEAK--KAGARIVATG----------RSDYPNQINNLLGFPG 334
Query: 296 FGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 341
G + A R D + A+ + EE E+ +I P + I
Sbjct: 335 IFRGALDVRA-RTITDSXIIAAAKAIASIVEEPSEENIIPSPLNPI 379
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 34/256 (13%)
Query: 76 IQFEDFANHNAFELLAKYGTTH--LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLF 133
I ED F +L + VF+DD Q + E + +
Sbjct: 138 INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVV 197
Query: 134 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAH 192
G G AG I + + ++ K + VD KG++ + ++ L + A
Sbjct: 198 NGIGAAGYNIVKFL-----------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR 246
Query: 193 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT 252
P D ++ G E I+ + KP+I AL+NP + +
Sbjct: 247 ITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKXS---RKPVIFALANPVPEIDPE 303
Query: 253 -AEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDD 311
A EA G I A+G + P Q NN FPG G V + ++ +
Sbjct: 304 LAREA-----GAFIVATG----------RSDHPNQVNNLLAFPGIXKGAVEKRS-KITKN 347
Query: 312 MLLAASEALAKQVTEE 327
LL+A EA+A+ E
Sbjct: 348 XLLSAVEAIARSCEPE 363
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 255 EAYTWSKGRAIFASGSPFDPFEYNGKV-FVPGQANNAYIFPGFGLGLVISGAIRVHDDML 313
+A W G + ++ F P EYNGKV +PG A+ P G G+ G +V +
Sbjct: 494 DARAWCLGGCLESAPGCFLPLEYNGKVTMIPGGAS-----PTCGTGVHFIGMPKV---LE 545
Query: 314 LAASEALAKQVTEENFEKGLIYPP 337
L + L K+ ++ +YPP
Sbjct: 546 LVLTNGLDKRTGKQ------VYPP 563
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 188 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
+P + + + L+D +++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 89
>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
Length = 345
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 205
A ++++Q K PV+ ++ D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 206 VIKPTILIGSS 216
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 188 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 188 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 188 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 188 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 241
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|3HQ6|A Chain A, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
pdb|3HQ6|B Chain B, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
Length = 345
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 205
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 206 VIKPTILIGSS 216
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 60 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 93
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 60 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 93
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HQ7|A Chain A, Ccpa From G. Sulfurreducens, G94kK97QR100I VARIANT
Length = 345
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 148 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 205
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 206 VIKPTILIGSS 216
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|1V9C|A Chain A, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
pdb|1V9C|B Chain B, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
Length = 218
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 220 RTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG 262
R F EV+E +A P ++A + T + A AY W KG
Sbjct: 86 RLFGNEVVELLA----HPEVVARAKATGGTRAEAAVAYAWEKG 124
>pdb|3RU6|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
Length = 303
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 194 HEPVNNLLDAVKVIKP----TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 249
H+ N + DA + + I I +S G+ +EV+ ++ F+++PL+LA+S TS
Sbjct: 86 HDIPNTMADACEEVSKLGVDMINIHASA-GKIAIQEVMTRLSKFSKRPLVLAVSALTSFD 144
Query: 250 E 250
E
Sbjct: 145 E 145
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 197 VNNLLDAVKVIKP---TILI-GSSGVGRTFTKEVIEAMASFNEKPLIL----ALSNPTSQ 248
+ +LL+ + ++ P T+LI G SG G+ + A ++ +++PL+ AL+ +
Sbjct: 11 MQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70
Query: 249 SECTAEE--AYTWS----KGRAIFASG 269
SE E A+T + +GR + A G
Sbjct: 71 SELFGHEKGAFTGADKRREGRFVEADG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,587,339
Number of Sequences: 62578
Number of extensions: 413020
Number of successful extensions: 1127
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 29
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)